Query psy6196
Match_columns 146
No_of_seqs 129 out of 461
Neff 6.1
Searched_HMMs 29240
Date Fri Aug 16 20:09:31 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6196.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6196hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mca_B Protein DOM34, elongati 100.0 1.5E-30 5.2E-35 221.9 5.8 109 27-135 62-173 (390)
2 3j15_A Protein pelota; ribosom 100.0 2.4E-29 8.1E-34 212.2 7.1 108 27-134 60-171 (357)
3 3oby_A Protein pelota homolog; 99.9 1.9E-27 6.4E-32 200.6 11.5 97 33-133 69-165 (352)
4 2vgn_A DOM34; translation term 99.9 2.4E-27 8.4E-32 201.7 11.8 103 33-135 71-178 (386)
5 3obw_A Protein pelota homolog; 99.9 2.3E-27 7.9E-32 200.8 8.9 100 33-134 83-183 (364)
6 3agj_B Protein pelota homolog; 99.9 8.4E-25 2.9E-29 184.3 12.6 98 33-133 66-165 (358)
7 2qi2_A Pelota, cell division p 99.9 4.9E-25 1.7E-29 185.4 8.5 100 33-134 69-168 (347)
8 3e20_C Eukaryotic peptide chai 99.5 7.4E-16 2.5E-20 133.1 -1.8 93 38-135 94-187 (441)
9 1dt9_A ERF1, protein (eukaryot 99.4 1.1E-13 3.7E-18 118.9 5.8 97 37-139 88-186 (437)
10 3agk_A Peptide chain release f 99.3 3.1E-12 1.1E-16 107.6 5.3 81 57-139 102-183 (373)
11 3mca_B Protein DOM34, elongati 98.2 4.1E-07 1.4E-11 77.3 1.5 36 1-36 96-131 (390)
12 3obw_A Protein pelota homolog; 98.0 6.2E-06 2.1E-10 69.5 4.9 35 1-35 109-143 (364)
13 3j15_A Protein pelota; ribosom 97.9 5.5E-06 1.9E-10 69.5 4.1 35 1-35 95-129 (357)
14 2vgn_A DOM34; translation term 97.9 7.6E-06 2.6E-10 69.3 3.5 35 1-35 101-135 (386)
15 3oby_A Protein pelota homolog; 97.8 1.3E-05 4.5E-10 67.3 4.1 33 2-35 92-124 (352)
16 3agj_B Protein pelota homolog; 97.8 2.2E-05 7.4E-10 65.8 4.9 33 1-33 92-125 (358)
17 2qi2_A Pelota, cell division p 97.6 3.1E-05 1.1E-09 64.8 3.7 34 1-35 93-126 (347)
18 3e20_C Eukaryotic peptide chai 95.7 0.0012 4.2E-08 56.8 -0.9 34 2-35 112-146 (441)
19 3agk_A Peptide chain release f 93.8 0.014 4.8E-07 48.6 0.6 44 1-44 103-147 (373)
20 1dt9_A ERF1, protein (eukaryot 92.2 0.028 9.5E-07 47.9 0.1 32 3-35 108-141 (437)
21 4g9s_B Inhibitor of G-type lys 43.8 47 0.0016 22.3 5.2 39 33-76 6-44 (111)
22 1owx_A Lupus LA protein, SS-B, 25.3 64 0.0022 22.4 3.4 45 63-109 12-56 (121)
23 1qxf_A GR2, 30S ribosomal prot 23.7 20 0.00069 22.9 0.4 27 36-62 37-63 (66)
24 4dzg_A PLIG; lysozyme inhibito 21.2 30 0.001 23.8 0.9 20 32-51 7-26 (114)
No 1
>3mca_B Protein DOM34, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.96 E-value=1.5e-30 Score=221.87 Aligned_cols=109 Identities=46% Similarity=0.792 Sum_probs=94.3
Q ss_pred HHhccc---ccCCCCCceEEEEEeEEeeeCcccCCCceEEEEecCCCeEEEEcCCCChHHHHHHHHHhcccCCccEEEEE
Q psy6196 27 TARIGL---KSPFTPAVGYYYYCGRNIQENQYVKMGAYHTLDLELNRKFELSKPEWDSIALERIEVACNIEKTADVAAVM 103 (146)
Q Consensus 27 ~~~L~~---~vef~~~~~~LRI~G~i~~~~e~v~~G~yHTl~i~~~~~~tI~K~~Wd~~~le~L~eA~~~~~~~~v~~v~ 103 (146)
+++|++ +++|||++++|||+|+|+.+|+++++|+|||++|+||++|+|+|.+||++++++|++||+++.++++++|+
T Consensus 62 ~~~L~i~Ve~ief~~~~~~Lri~G~i~~~~~~vk~G~~HTl~ie~~~~i~i~K~~wd~~~le~L~ea~~~~~~~~~~~Vv 141 (390)
T 3mca_B 62 VMKLRILVENMDFDTKAAQLHIKGRTTEYHPEVKMGSYHTLDLELHRNFTLYKNEWDAFALDRVDAACNPSRNAEIGAVV 141 (390)
T ss_dssp -----EECCCEEECTTSSCEEEC-CBCSCCC---CCSCCCCCCCSSSCCBCC-CCCCHHHHHHHTTSSSCC--CCEEEEE
T ss_pred EEEEEEEEEEEEecCCCCEEEEEEEEecCCccccccceEEEEEecCCcEEEEEcCCCHHHHHHHHHHhcccccCcEEEEE
Confidence 444554 88999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCeEEEEEEecceeEEEEEEEeeCCCccCC
Q psy6196 104 MQEGLANIMLITASMSLVRTKIETNIPRKRRG 135 (146)
Q Consensus 104 ~~eG~A~i~lv~~~~~~~~~~i~~~ipkK~~~ 135 (146)
||+|.|+||++++++++++++++.++|||+++
T Consensus 142 ~deg~A~i~ll~~~~~~~~~~i~~~iPkK~~~ 173 (390)
T 3mca_B 142 LDEGLANICLITDYMTILRQRIDQVIPRKRRG 173 (390)
T ss_dssp EETTEEEEEEECSSCEEEEEEEECCCCCCBTT
T ss_pred EECCcEEEEEEcCCEEEEEEEEEEeCCCcCCC
Confidence 99999999999999999999999999999764
No 2
>3j15_A Protein pelota; ribosome recycling, ribosome, archaea, translation-transport complex; HET: ADP; 6.60A {Pyrococcus furiosus}
Probab=99.95 E-value=2.4e-29 Score=212.23 Aligned_cols=108 Identities=25% Similarity=0.394 Sum_probs=102.4
Q ss_pred HHhccc---ccCCCCCceEEEEEeEEeeeC-cccCCCceEEEEecCCCeEEEEcCCCChHHHHHHHHHhcccCCccEEEE
Q psy6196 27 TARIGL---KSPFTPAVGYYYYCGRNIQEN-QYVKMGAYHTLDLELNRKFELSKPEWDSIALERIEVACNIEKTADVAAV 102 (146)
Q Consensus 27 ~~~L~~---~vef~~~~~~LRI~G~i~~~~-e~v~~G~yHTl~i~~~~~~tI~K~~Wd~~~le~L~eA~~~~~~~~v~~v 102 (146)
++.|++ +++||+++++|||+|+|+++| +++++|+|||++|+||++|+|+|..|+++++++|++||+++.++++++|
T Consensus 60 ~~~l~i~Ve~~ef~~~~~~Lri~G~i~~~~~~~v~~G~~hT~~ie~~~~i~i~k~~w~~~~~e~L~ea~~~~~~~~~~~V 139 (357)
T 3j15_A 60 PVFLGVQAEKINFHKFANQVRVTGPIVYASREDVPLGKYHTIAIEQGTVVTIQKPRWKEHHIERLKEAVAASKRARVMIV 139 (357)
T ss_dssp CCCCEEECSCEEEETTTTEEEECCBEEECCCSSCCCSSBCCEEECSSCCEEECTTCCCHHHHHHHHHSCSSCCCSCCCEE
T ss_pred EEEEEEEEEEEEecCCCCEEEEEEEEEeccccccccccEEEEEecCCCeEEEEEecCCHHHHHHHHHHHhccccCcEEEE
Confidence 444554 889999999999999999999 9999999999999999999999988999999999999999999999999
Q ss_pred EEecCeEEEEEEecceeEEEEEEEeeCCCccC
Q psy6196 103 MMQEGLANIMLITASMSLVRTKIETNIPRKRR 134 (146)
Q Consensus 103 ~~~eG~A~i~lv~~~~~~~~~~i~~~ipkK~~ 134 (146)
+||+|.|+||++++++++++++++.++|||++
T Consensus 140 v~d~g~A~i~~l~~~~~~~~~~i~~~ipkK~~ 171 (357)
T 3j15_A 140 VIDDGEADMALVREYGVEILNSIRHNLGGKRY 171 (357)
T ss_dssp EECSSCEEEEEEETTEEEEEECCCCCSCSSSS
T ss_pred EEECCcEEEEEEeCCEEEEEEEEEecCCCCcc
Confidence 99999999999999999999999999999974
No 3
>3oby_A Protein pelota homolog; SM fold, hydrolase; 2.90A {Archaeoglobus fulgidus}
Probab=99.94 E-value=1.9e-27 Score=200.62 Aligned_cols=97 Identities=16% Similarity=0.249 Sum_probs=86.1
Q ss_pred ccCCCCCceEEEEEeEEeeeCcccCCCceEEEEecCCCeEEEEcCCCChHHHHHHHHHhcccCCccEEEEEEecCeEEEE
Q psy6196 33 KSPFTPAVGYYYYCGRNIQENQYVKMGAYHTLDLELNRKFELSKPEWDSIALERIEVACNIEKTADVAAVMMQEGLANIM 112 (146)
Q Consensus 33 ~vef~~~~~~LRI~G~i~~~~e~v~~G~yHTl~i~~~~~~tI~K~~Wd~~~le~L~eA~~~~~~~~v~~v~~~eG~A~i~ 112 (146)
+++|||++++|||+|+|+++|++ |+|||++|+||++|+|+| +|+++++++|++||+++.++++++|+||+|.|+||
T Consensus 69 ~ief~~~~~~Lri~G~i~~~~~~---G~~hT~~iep~~~i~i~k-~w~~~~~e~L~ea~~~~~~~~~~~vv~d~g~A~i~ 144 (352)
T 3oby_A 69 KVEFHRFANRLRVSGKIVAGIEE---SGYHTLNITVGKELSIIK-KWKPEQLERLRRAVEDSNRPEIVMLTIEEGYAVAG 144 (352)
T ss_dssp EEEECSSSSCEEEEEEEEEC-------CEEEEEECTTCCEEEEE-ECCHHHHHHHHHHHTTSCCCCEEEEEEETTEEEEE
T ss_pred EEEecCCCCEEEEEEEEEecCCC---CeEEEEEEeCCCeEEEEE-cCCHHHHHHHHHHhhccccCcEEEEEEECCcEEEE
Confidence 89999999999999999999988 999999999999999999 89999999999999999999999999999999999
Q ss_pred EEecceeEEEEEEEeeCCCcc
Q psy6196 113 LITASMSLVRTKIETNIPRKR 133 (146)
Q Consensus 113 lv~~~~~~~~~~i~~~ipkK~ 133 (146)
+|++++++++++++.++|||+
T Consensus 145 ~l~~~~~~~~~~i~~~ipkK~ 165 (352)
T 3oby_A 145 VLRQWGVEEIFEERMGYGKGM 165 (352)
T ss_dssp EEETTEEEEEEEEEC------
T ss_pred EEeCCEEEEEEEEeccCCCcc
Confidence 999999999999999999986
No 4
>2vgn_A DOM34; translation termination factor, protein biosynthesis, translation regulation, cell division, mRNA degradation; 2.5A {Saccharomyces cerevisiae} SCOP: b.38.4.1 c.55.4.2 d.79.3.2 PDB: 2vgm_A 3izq_0 3j16_A*
Probab=99.94 E-value=2.4e-27 Score=201.71 Aligned_cols=103 Identities=30% Similarity=0.562 Sum_probs=93.2
Q ss_pred ccCCCCCceEEEEEeEEeeeCcc-----cCCCceEEEEecCCCeEEEEcCCCChHHHHHHHHHhcccCCccEEEEEEecC
Q psy6196 33 KSPFTPAVGYYYYCGRNIQENQY-----VKMGAYHTLDLELNRKFELSKPEWDSIALERIEVACNIEKTADVAAVMMQEG 107 (146)
Q Consensus 33 ~vef~~~~~~LRI~G~i~~~~e~-----v~~G~yHTl~i~~~~~~tI~K~~Wd~~~le~L~eA~~~~~~~~v~~v~~~eG 107 (146)
+++|||++++|||+|+|+++|++ |++|+|||++|+|+++|+++|..|+++++++|++|++++.++++++|+||+|
T Consensus 71 ~~~f~~~~~~lri~G~i~~~~~~~~~~~vk~g~~hT~~iep~~~i~i~k~~w~~f~~e~L~~a~~~~~~~~~~~vv~d~~ 150 (386)
T 2vgn_A 71 SEDFDMKDEYLKYKGVTVTDESGASNVDIPVGKYLSFTLDYVYPFTIIKQNFNKFMQKLLNEACNIEYKSDTAAVVLQEG 150 (386)
T ss_dssp EEEEETTTTEEEEEEEECCCTTSSSSTTCCTTCEEEEECCSSSCEEEEESCCCHHHHHHHHHTTCTTTTTCEEEEEEETT
T ss_pred EEEecCCCCEEEEEEEEEccCCccccccccCccEEEEEEeCCCeEEEEEccCChhhHHHHHHHhccccCCCEEEEEEECC
Confidence 79999999999999999999999 9999999999999999999998899999999999999989999999999999
Q ss_pred eEEEEEEecceeEEEEEEEeeCCCccCC
Q psy6196 108 LANIMLITASMSLVRTKIETNIPRKRRG 135 (146)
Q Consensus 108 ~A~i~lv~~~~~~~~~~i~~~ipkK~~~ 135 (146)
.|+||++++++++++++++.++|||+++
T Consensus 151 ~A~i~~l~~~~~~~~~~i~~~iP~K~~~ 178 (386)
T 2vgn_A 151 IAHVCLVTSSSTILKQKIEYSMPKKKRT 178 (386)
T ss_dssp EEEEEEECSSCEEEEEEEEC--------
T ss_pred cEEEEEEECCEEEEEEEEEecCCCCccC
Confidence 9999999999999999999999999865
No 5
>3obw_A Protein pelota homolog; SM fold, hydrolase; 2.60A {Sulfolobus solfataricus}
Probab=99.94 E-value=2.3e-27 Score=200.78 Aligned_cols=100 Identities=14% Similarity=0.189 Sum_probs=82.9
Q ss_pred ccCCCCCceEEEEEeEEeeeC-cccCCCceEEEEecCCCeEEEEcCCCChHHHHHHHHHhcccCCccEEEEEEecCeEEE
Q psy6196 33 KSPFTPAVGYYYYCGRNIQEN-QYVKMGAYHTLDLELNRKFELSKPEWDSIALERIEVACNIEKTADVAAVMMQEGLANI 111 (146)
Q Consensus 33 ~vef~~~~~~LRI~G~i~~~~-e~v~~G~yHTl~i~~~~~~tI~K~~Wd~~~le~L~eA~~~~~~~~v~~v~~~eG~A~i 111 (146)
+++|||++++|||+|+|+.+| +++++|+|||++|+||++|+|+|..|+++++++|+++|+ .++++++|+||+|+|+|
T Consensus 83 ~ief~~~~~~Lri~G~iv~~~~~~v~~G~~HT~~ie~~~~i~i~K~~w~~~~le~L~e~~~--~~~~~~~vv~d~g~A~i 160 (364)
T 3obw_A 83 YTEFQEFTNRLRIHGIIEDAPERFGIKGAHHTINLDIGDEIIIIKQQWNKYVLDRLKRQAN--KRSRIIIALVDFDEYLI 160 (364)
T ss_dssp EEEEETTTTEEEEEEEEEECCGGGCCTTCEEEEEECTTCEEEEECSCC----------------CCCEEEEEEETTEEEE
T ss_pred EEEecCCCCEEEEEEEEEeccccccccceEEEEEEcCCCeEEEEEccCCHHHHHHHHHHhC--cCCCEEEEEEECCcEEE
Confidence 899999999999999999987 889999999999999999999998899999999999987 57899999999999999
Q ss_pred EEEecceeEEEEEEEeeCCCccC
Q psy6196 112 MLITASMSLVRTKIETNIPRKRR 134 (146)
Q Consensus 112 ~lv~~~~~~~~~~i~~~ipkK~~ 134 (146)
|++++++++++++++.++|||++
T Consensus 161 ~~l~~~~~~~~~~i~~~iPkK~~ 183 (364)
T 3obw_A 161 AIPFEQGIKILSEKSLRPLNEEE 183 (364)
T ss_dssp EEECSSCEECCCEEECGGGCSST
T ss_pred EEEeCCEEEEEEEEEeeCccchh
Confidence 99999999999999999999963
No 6
>3agj_B Protein pelota homolog; GTP binding, translation-hydrolase complex; HET: GTP; 2.30A {Aeropyrum pernix}
Probab=99.92 E-value=8.4e-25 Score=184.34 Aligned_cols=98 Identities=12% Similarity=0.245 Sum_probs=94.8
Q ss_pred ccCCCCCceEEEEEeEEeeeC-cccCCCceEEEEecCCCeEEEEcCC-CChHHHHHHHHHhcccCCccEEEEEEecCeEE
Q psy6196 33 KSPFTPAVGYYYYCGRNIQEN-QYVKMGAYHTLDLELNRKFELSKPE-WDSIALERIEVACNIEKTADVAAVMMQEGLAN 110 (146)
Q Consensus 33 ~vef~~~~~~LRI~G~i~~~~-e~v~~G~yHTl~i~~~~~~tI~K~~-Wd~~~le~L~eA~~~~~~~~v~~v~~~eG~A~ 110 (146)
+++||+++++|||+|+|+++| ++|++|+|||++|+|+++|+|+|.+ |+++++++|++| +.++++++|+||+|.|+
T Consensus 66 ~~~f~~~~~~Lri~G~i~~~~~~~v~~g~~ht~~ie~~~~i~i~k~~~w~~~~le~L~~~---~~~~~~~~vvvd~~~A~ 142 (358)
T 3agj_B 66 SIEFQPFTGKLRISGIVVEGPDEFGVKGRRHSTAVSIGTWLVVERDKGWSEQELERLAAG---RARGTAVIAAVDYDEFA 142 (358)
T ss_dssp EEEECTTSCEEEEEEEEEECCGGGCCTTSEEEEEEETTCCEEEECTTCCCHHHHHHHHHC---CCCCEEEEEEECSSEEE
T ss_pred EEEcCCCCCEEEEEEEEccCCCcccccccEEEEEEeCCCcEEEEEecCCCHhhHHHHHhh---CcCCCEEEEEEECCcEE
Confidence 799999999999999999999 8999999999999999999999976 999999999998 67889999999999999
Q ss_pred EEEEecceeEEEEEEEeeCCCcc
Q psy6196 111 IMLITASMSLVRTKIETNIPRKR 133 (146)
Q Consensus 111 i~lv~~~~~~~~~~i~~~ipkK~ 133 (146)
||++++++++++++++.++|||+
T Consensus 143 i~~l~~~~~~~~~~i~~~vpkK~ 165 (358)
T 3agj_B 143 LAVLAGHGMKILEDTSARLPGKD 165 (358)
T ss_dssp EEEEESSCEEEEEEEECCCCCTT
T ss_pred EEEEeCCEEEEEEEEEecCCCCC
Confidence 99999999999999999999997
No 7
>2qi2_A Pelota, cell division protein pelota related protein; DOM34, cell cycle; 2.90A {Thermoplasma acidophilum} SCOP: b.38.4.1 c.55.4.2 d.79.3.2
Probab=99.91 E-value=4.9e-25 Score=185.40 Aligned_cols=100 Identities=19% Similarity=0.220 Sum_probs=87.8
Q ss_pred ccCCCCCceEEEEEeEEeeeCcccCCCceEEEEecCCCeEEEEcCCCChHHHHHHHHHhcccCCccEEEEEEecCeEEEE
Q psy6196 33 KSPFTPAVGYYYYCGRNIQENQYVKMGAYHTLDLELNRKFELSKPEWDSIALERIEVACNIEKTADVAAVMMQEGLANIM 112 (146)
Q Consensus 33 ~vef~~~~~~LRI~G~i~~~~e~v~~G~yHTl~i~~~~~~tI~K~~Wd~~~le~L~eA~~~~~~~~v~~v~~~eG~A~i~ 112 (146)
+++||+++++||++|.++.+|++ ++|+|||++++|+++|+++| +|+++++++|++|++++.++++++|+||+|.|+||
T Consensus 69 ~v~f~~~~~~Lri~G~vv~~~~~-~~g~~htl~ie~~~~i~i~k-~w~~f~~e~L~~a~~~~~~~~~~~vv~d~~~A~i~ 146 (347)
T 2qi2_A 69 KIEFQDFDNRLRILGTVIEGPED-TKGKHQSITVTVDSEISITK-EWDDQHIDLLKEATDEKYVTVYTAVAMDEDEAQIF 146 (347)
T ss_dssp CTTCSCEEEEEEECC----------CCSEEEEEECTTCEEEEES-CCCHHHHHHHHHHTCHHHHCCEEEEEECSSEEEEE
T ss_pred EEEccCCCCEEecceEEEEcCCC-CCccEEEEEEcCCCeEEEEE-cCCHhHHHHHHHHhccccCCCEEEEEEeCCcEEEE
Confidence 89999999999999999999998 88999999999999999999 89999999999999988889999999999999999
Q ss_pred EEecceeEEEEEEEeeCCCccC
Q psy6196 113 LITASMSLVRTKIETNIPRKRR 134 (146)
Q Consensus 113 lv~~~~~~~~~~i~~~ipkK~~ 134 (146)
++++++++++++++.++|||++
T Consensus 147 ~l~~~~~~~~~~i~~~~~Kk~~ 168 (347)
T 2qi2_A 147 LIHPYGIQQVGTVYSGRSGKYA 168 (347)
T ss_dssp EECSSCEEEEEEEECCHHHHC-
T ss_pred EEECCEEEEEEEEeecCCCccc
Confidence 9999999999999999999875
No 8
>3e20_C Eukaryotic peptide chain release factor subunit 1; SUP35, SUP45, translation termination, peptide release, GTP- nucleotide-binding; 3.50A {Schizosaccharomyces pombe}
Probab=99.50 E-value=7.4e-16 Score=133.13 Aligned_cols=93 Identities=17% Similarity=0.247 Sum_probs=47.0
Q ss_pred CCceEEEEEeEEeeeCcccCCCceEEEEecCCCeEEEEcC-CCChHHHHHHHHHhcccCCccEEEEEEecCeEEEEEEec
Q psy6196 38 PAVGYYYYCGRNIQENQYVKMGAYHTLDLELNRKFELSKP-EWDSIALERIEVACNIEKTADVAAVMMQEGLANIMLITA 116 (146)
Q Consensus 38 ~~~~~LRI~G~i~~~~e~v~~G~yHTl~i~~~~~~tI~K~-~Wd~~~le~L~eA~~~~~~~~v~~v~~~eG~A~i~lv~~ 116 (146)
|..+.++++|.|+.++ +.|+|||++|+|+++|++.|. +|+++++++|++|++++. .+++|+||+|.|.++.+..
T Consensus 94 p~~g~v~~~G~~~~e~---~~~~~~T~~iep~~pi~i~k~~~w~~~~le~L~eal~~~~--~~gvVvvD~~ga~i~~l~g 168 (441)
T 3e20_C 94 PDNGLVIYCGEVIMEG---NKTRKLNIDFEPFKPINTSQYLCDNKFHTEALAELLESDQ--RFGFIVMDGHQTLYGVVSG 168 (441)
T ss_dssp TTSCCEEEEEEECCGG---GCCEEEEEEECCSCCTTCCEEEEESSCCCTTGGGGC-------------------------
T ss_pred CCCCEEEEeceeeccC---CceeEEEEEecCCCceEEEEEccCCHHHHHHHHHHhCccC--cEEEEEEecCCeEEEEEec
Confidence 8899999999999765 458999999999999999886 799999999999998854 7999999998999999999
Q ss_pred ceeEEEEEEEeeCCCccCC
Q psy6196 117 SMSLVRTKIETNIPRKRRG 135 (146)
Q Consensus 117 ~~~~~~~~i~~~ipkK~~~ 135 (146)
+++.++++++.++|||++.
T Consensus 169 ~~~evl~~i~~~vPkK~~~ 187 (441)
T 3e20_C 169 SAREVLQRFTVDLPKKHGR 187 (441)
T ss_dssp -------------------
T ss_pred CeEEEEEEEEecCCCcccC
Confidence 9999999999999999543
No 9
>1dt9_A ERF1, protein (eukaryotic peptide chain release factor subunit 1); tRNA mimicry, protein sythesis, STOP codon recognition, peptidyl-tRNA hydrolysis; 2.70A {Homo sapiens} SCOP: c.55.4.2 d.79.3.2 d.91.1.1 PDB: 3e1y_A* 2ktu_A 2ktv_A 2lgt_A 2hst_A
Probab=99.42 E-value=1.1e-13 Score=118.95 Aligned_cols=97 Identities=15% Similarity=0.167 Sum_probs=82.9
Q ss_pred CCCceEEEEEeEEeeeCcccCCCceEEEEecCCCeE--EEEcCCCChHHHHHHHHHhcccCCccEEEEEEecCeEEEEEE
Q psy6196 37 TPAVGYYYYCGRNIQENQYVKMGAYHTLDLELNRKF--ELSKPEWDSIALERIEVACNIEKTADVAAVMMQEGLANIMLI 114 (146)
Q Consensus 37 ~~~~~~LRI~G~i~~~~e~v~~G~yHTl~i~~~~~~--tI~K~~Wd~~~le~L~eA~~~~~~~~v~~v~~~eG~A~i~lv 114 (146)
.+..+.+.+.|.++.++.+ ++|||++++|+.+| +++| +|++++++.|.++++. .+.+++|+||+|.|+||++
T Consensus 88 ~~~~Glvvf~g~~~~~~g~---~~~~tl~~e~~~pi~~~~~~-~~~~f~l~~L~~~~~~--~~~~~vvvvd~~~A~i~~~ 161 (437)
T 1dt9_A 88 VPPNGLVVYCGTIVTEEGK---EKKVNIDFEPFKPINTSLYL-CDNKFHTEALTALLSD--DSKFGFIVIDGSGALFGTL 161 (437)
T ss_dssp CCTTCEEEEEEEEECGGGC---EEEEEEEECCSCCTTCCEEE-EESSCCCHHHHHHCCC--CCEEEEEECCSSCCCEEEE
T ss_pred CCCCeEEEEeCccccCCCc---eEEEEEEecCCCCCceeEEE-ecChhhHHHHHHHhcC--CCCEEEEEEeCCceEEEEE
Confidence 4666777777776665432 68999999999999 8988 8999999999999987 6789999999999999999
Q ss_pred ecceeEEEEEEEeeCCCccCCCCCc
Q psy6196 115 TASMSLVRTKIETNIPRKRRGYFCA 139 (146)
Q Consensus 115 ~~~~~~~~~~i~~~ipkK~~~~~~~ 139 (146)
+++++.++++++.++|||++..+.+
T Consensus 162 ~~~~~~~~~~i~~~~P~K~~~Gg~s 186 (437)
T 1dt9_A 162 QGNTREVLHKFTVDLPKKHGRGGQS 186 (437)
T ss_dssp ETTEEEEEECCCCCCSCCCCSSCSC
T ss_pred cCcEEEEEEEEEecCCCCCcCCCcc
Confidence 9999999999999999997543433
No 10
>3agk_A Peptide chain release factor subunit 1; translation; 2.10A {Aeropyrum pernix}
Probab=99.27 E-value=3.1e-12 Score=107.65 Aligned_cols=81 Identities=11% Similarity=0.083 Sum_probs=65.8
Q ss_pred CCCceEEEEecCCCeEEEEcC-CCChHHHHHHHHHhcccCCccEEEEEEecCeEEEEEEecceeEEEEEEEeeCCCccCC
Q psy6196 57 KMGAYHTLDLELNRKFELSKP-EWDSIALERIEVACNIEKTADVAAVMMQEGLANIMLITASMSLVRTKIETNIPRKRRG 135 (146)
Q Consensus 57 ~~G~yHTl~i~~~~~~tI~K~-~Wd~~~le~L~eA~~~~~~~~v~~v~~~eG~A~i~lv~~~~~~~~~~i~~~ipkK~~~ 135 (146)
+.|+|||++++|+.+|++.|. +|+.++++.|.++++. .+.+++|+||+|.|.||+++.+++.++.+++.++|+|++.
T Consensus 102 ~~~~~~t~~~~~~~p~~~~~~~~~~~f~l~~L~~~~~~--~~~~~vvvvd~~~A~i~~~~~~~~~~~~~i~~~vp~K~~~ 179 (373)
T 3agk_A 102 STGKFECFMFSPPEPIRVFYYRTDKRFITDFLEDMVED--NNAIGIIIVERDQATIGLLKGARLEVLKELEGFVPGKHKM 179 (373)
T ss_dssp ---CCEEEEEBCSSCCCSCEEEEESSCCCHHHHTTSSC--SCEEEEEEEETTEEEEEEEETTEEEEEEEEECCCC-----
T ss_pred CCccEEEEEecCCCCceEEEEecCChhHHHHHHHHhcC--CCCEEEEEEeCCcEEEEEEeCcEEEEEEEEEecCCCCCcC
Confidence 569999999999999999885 6889999999999987 4789999999999999999999999999999999999753
Q ss_pred CCCc
Q psy6196 136 YFCA 139 (146)
Q Consensus 136 ~~~~ 139 (146)
.+.+
T Consensus 180 gG~s 183 (373)
T 3agk_A 180 GGQS 183 (373)
T ss_dssp ----
T ss_pred CCcc
Confidence 3333
No 11
>3mca_B Protein DOM34, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=98.17 E-value=4.1e-07 Score=77.31 Aligned_cols=36 Identities=50% Similarity=0.834 Sum_probs=32.9
Q ss_pred CCceEEEEeecCceEEEEcCCcChhHHHhcccccCC
Q psy6196 1 MGAYHTLDLELNRKFELSKPEWDSLYTARIGLKSPF 36 (146)
Q Consensus 1 ~g~~ht~~~~~~~~ftl~K~~wd~~~~~~L~~~vef 36 (146)
+|+|||++|++++||+|+|.+||+++.++|+..++=
T Consensus 96 ~G~~HTl~ie~~~~i~i~K~~wd~~~le~L~ea~~~ 131 (390)
T 3mca_B 96 MGSYHTLDLELHRNFTLYKNEWDAFALDRVDAACNP 131 (390)
T ss_dssp CCSCCCCCCCSSSCCBCC-CCCCHHHHHHHTTSSSC
T ss_pred ccceEEEEEecCCcEEEEEcCCCHHHHHHHHHHhcc
Confidence 699999999999999999999999999999987664
No 12
>3obw_A Protein pelota homolog; SM fold, hydrolase; 2.60A {Sulfolobus solfataricus}
Probab=97.97 E-value=6.2e-06 Score=69.52 Aligned_cols=35 Identities=23% Similarity=0.509 Sum_probs=21.3
Q ss_pred CCceEEEEeecCceEEEEcCCcChhHHHhcccccC
Q psy6196 1 MGAYHTLDLELNRKFELSKPEWDSLYTARIGLKSP 35 (146)
Q Consensus 1 ~g~~ht~~~~~~~~ftl~K~~wd~~~~~~L~~~ve 35 (146)
+|+|||+++++++||+++|..||+++.++|+...+
T Consensus 109 ~G~~HT~~ie~~~~i~i~K~~w~~~~le~L~e~~~ 143 (364)
T 3obw_A 109 KGAHHTINLDIGDEIIIIKQQWNKYVLDRLKRQAN 143 (364)
T ss_dssp TTCEEEEEECTTCEEEEECSCC-------------
T ss_pred cceEEEEEEcCCCeEEEEEccCCHHHHHHHHHHhC
Confidence 69999999999999999998899999999998555
No 13
>3j15_A Protein pelota; ribosome recycling, ribosome, archaea, translation-transport complex; HET: ADP; 6.60A {Pyrococcus furiosus}
Probab=97.94 E-value=5.5e-06 Score=69.52 Aligned_cols=35 Identities=26% Similarity=0.553 Sum_probs=32.6
Q ss_pred CCceEEEEeecCceEEEEcCCcChhHHHhcccccC
Q psy6196 1 MGAYHTLDLELNRKFELSKPEWDSLYTARIGLKSP 35 (146)
Q Consensus 1 ~g~~ht~~~~~~~~ftl~K~~wd~~~~~~L~~~ve 35 (146)
+|+|||+++++++||+++|..||+++.++|+..++
T Consensus 95 ~G~~hT~~ie~~~~i~i~k~~w~~~~~e~L~ea~~ 129 (357)
T 3j15_A 95 LGKYHTIAIEQGTVVTIQKPRWKEHHIERLKEAVA 129 (357)
T ss_dssp CSSBCCEEECSSCCEEECTTCCCHHHHHHHHHSCS
T ss_pred cccEEEEEecCCCeEEEEEecCCHHHHHHHHHHHh
Confidence 69999999999999999998899999999997555
No 14
>2vgn_A DOM34; translation termination factor, protein biosynthesis, translation regulation, cell division, mRNA degradation; 2.5A {Saccharomyces cerevisiae} SCOP: b.38.4.1 c.55.4.2 d.79.3.2 PDB: 2vgm_A 3izq_0 3j16_A*
Probab=97.85 E-value=7.6e-06 Score=69.31 Aligned_cols=35 Identities=14% Similarity=0.338 Sum_probs=32.7
Q ss_pred CCceEEEEeecCceEEEEcCCcChhHHHhcccccC
Q psy6196 1 MGAYHTLDLELNRKFELSKPEWDSLYTARIGLKSP 35 (146)
Q Consensus 1 ~g~~ht~~~~~~~~ftl~K~~wd~~~~~~L~~~ve 35 (146)
||+|||+++++++||+++|..||+++.+.|+..++
T Consensus 101 ~g~~hT~~iep~~~i~i~k~~w~~f~~e~L~~a~~ 135 (386)
T 2vgn_A 101 VGKYLSFTLDYVYPFTIIKQNFNKFMQKLLNEACN 135 (386)
T ss_dssp TTCEEEEECCSSSCEEEEESCCCHHHHHHHHHTTC
T ss_pred CccEEEEEEeCCCeEEEEEccCChhhHHHHHHHhc
Confidence 69999999999999999998899999999998664
No 15
>3oby_A Protein pelota homolog; SM fold, hydrolase; 2.90A {Archaeoglobus fulgidus}
Probab=97.80 E-value=1.3e-05 Score=67.26 Aligned_cols=33 Identities=21% Similarity=0.521 Sum_probs=30.1
Q ss_pred CceEEEEeecCceEEEEcCCcChhHHHhcccccC
Q psy6196 2 GAYHTLDLELNRKFELSKPEWDSLYTARIGLKSP 35 (146)
Q Consensus 2 g~~ht~~~~~~~~ftl~K~~wd~~~~~~L~~~ve 35 (146)
|+|||+++++++||+++| +||+++.++|+..++
T Consensus 92 G~~hT~~iep~~~i~i~k-~w~~~~~e~L~ea~~ 124 (352)
T 3oby_A 92 SGYHTLNITVGKELSIIK-KWKPEQLERLRRAVE 124 (352)
T ss_dssp -CEEEEEECTTCCEEEEE-ECCHHHHHHHHHHHT
T ss_pred CeEEEEEEeCCCeEEEEE-cCCHHHHHHHHHHhh
Confidence 899999999999999999 999999999997555
No 16
>3agj_B Protein pelota homolog; GTP binding, translation-hydrolase complex; HET: GTP; 2.30A {Aeropyrum pernix}
Probab=97.77 E-value=2.2e-05 Score=65.81 Aligned_cols=33 Identities=12% Similarity=0.310 Sum_probs=30.9
Q ss_pred CCceEEEEeecCceEEEEcCC-cChhHHHhcccc
Q psy6196 1 MGAYHTLDLELNRKFELSKPE-WDSLYTARIGLK 33 (146)
Q Consensus 1 ~g~~ht~~~~~~~~ftl~K~~-wd~~~~~~L~~~ 33 (146)
||+|||+++++++||+|+|.+ |++++.+.|...
T Consensus 92 ~g~~ht~~ie~~~~i~i~k~~~w~~~~le~L~~~ 125 (358)
T 3agj_B 92 KGRRHSTAVSIGTWLVVERDKGWSEQELERLAAG 125 (358)
T ss_dssp TTSEEEEEEETTCCEEEECTTCCCHHHHHHHHHC
T ss_pred cccEEEEEEeCCCcEEEEEecCCCHhhHHHHHhh
Confidence 699999999999999999965 999999999976
No 17
>2qi2_A Pelota, cell division protein pelota related protein; DOM34, cell cycle; 2.90A {Thermoplasma acidophilum} SCOP: b.38.4.1 c.55.4.2 d.79.3.2
Probab=97.63 E-value=3.1e-05 Score=64.82 Aligned_cols=34 Identities=15% Similarity=0.383 Sum_probs=31.4
Q ss_pred CCceEEEEeecCceEEEEcCCcChhHHHhcccccC
Q psy6196 1 MGAYHTLDLELNRKFELSKPEWDSLYTARIGLKSP 35 (146)
Q Consensus 1 ~g~~ht~~~~~~~~ftl~K~~wd~~~~~~L~~~ve 35 (146)
+|+|||++++++++|+++| +||+++.+.|+..++
T Consensus 93 ~g~~htl~ie~~~~i~i~k-~w~~f~~e~L~~a~~ 126 (347)
T 2qi2_A 93 KGKHQSITVTVDSEISITK-EWDDQHIDLLKEATD 126 (347)
T ss_dssp CCSEEEEEECTTCEEEEES-CCCHHHHHHHHHHTC
T ss_pred CccEEEEEEcCCCeEEEEE-cCCHhHHHHHHHHhc
Confidence 6999999999999999999 999999999997544
No 18
>3e20_C Eukaryotic peptide chain release factor subunit 1; SUP35, SUP45, translation termination, peptide release, GTP- nucleotide-binding; 3.50A {Schizosaccharomyces pombe}
Probab=95.72 E-value=0.0012 Score=56.78 Aligned_cols=34 Identities=12% Similarity=-0.023 Sum_probs=30.5
Q ss_pred CceEEEEeecCceEEEEcC-CcChhHHHhcccccC
Q psy6196 2 GAYHTLDLELNRKFELSKP-EWDSLYTARIGLKSP 35 (146)
Q Consensus 2 g~~ht~~~~~~~~ftl~K~-~wd~~~~~~L~~~ve 35 (146)
|.|||+++++++||++.|. +|++++.+.|...++
T Consensus 112 ~~~~T~~iep~~pi~i~k~~~w~~~~le~L~eal~ 146 (441)
T 3e20_C 112 TRKLNIDFEPFKPINTSQYLCDNKFHTEALAELLE 146 (441)
T ss_dssp CEEEEEEECCSCCTTCCEEEEESSCCCTTGGGGC-
T ss_pred eeEEEEEecCCCceEEEEEccCCHHHHHHHHHHhC
Confidence 6899999999999999996 999999999997554
No 19
>3agk_A Peptide chain release factor subunit 1; translation; 2.10A {Aeropyrum pernix}
Probab=93.76 E-value=0.014 Score=48.62 Aligned_cols=44 Identities=9% Similarity=-0.004 Sum_probs=34.2
Q ss_pred CCceEEEEeecCceEEEEcC-CcChhHHHhcccccCCCCCceEEE
Q psy6196 1 MGAYHTLDLELNRKFELSKP-EWDSLYTARIGLKSPFTPAVGYYY 44 (146)
Q Consensus 1 ~g~~ht~~~~~~~~ftl~K~-~wd~~~~~~L~~~vef~~~~~~LR 44 (146)
.|+|||+++++++||++.|. +|++++.+.|...++-++....+-
T Consensus 103 ~~~~~t~~~~~~~p~~~~~~~~~~~f~l~~L~~~~~~~~~~~vvv 147 (373)
T 3agk_A 103 TGKFECFMFSPPEPIRVFYYRTDKRFITDFLEDMVEDNNAIGIII 147 (373)
T ss_dssp --CCEEEEEBCSSCCCSCEEEEESSCCCHHHHTTSSCSCEEEEEE
T ss_pred CccEEEEEecCCCCceEEEEecCChhHHHHHHHHhcCCCCEEEEE
Confidence 37899999999999999995 899999999998666654333333
No 20
>1dt9_A ERF1, protein (eukaryotic peptide chain release factor subunit 1); tRNA mimicry, protein sythesis, STOP codon recognition, peptidyl-tRNA hydrolysis; 2.70A {Homo sapiens} SCOP: c.55.4.2 d.79.3.2 d.91.1.1 PDB: 3e1y_A* 2ktu_A 2ktv_A 2lgt_A 2hst_A
Probab=92.19 E-value=0.028 Score=47.87 Aligned_cols=32 Identities=13% Similarity=-0.003 Sum_probs=28.5
Q ss_pred ceEEEEeecCceE--EEEcCCcChhHHHhcccccC
Q psy6196 3 AYHTLDLELNRKF--ELSKPEWDSLYTARIGLKSP 35 (146)
Q Consensus 3 ~~ht~~~~~~~~f--tl~K~~wd~~~~~~L~~~ve 35 (146)
+|||+++++++|| ++.| +|++++.+.|...++
T Consensus 108 ~~~tl~~e~~~pi~~~~~~-~~~~f~l~~L~~~~~ 141 (437)
T 1dt9_A 108 KKVNIDFEPFKPINTSLYL-CDNKFHTEALTALLS 141 (437)
T ss_dssp EEEEEEECCSCCTTCCEEE-EESSCCCHHHHHHCC
T ss_pred EEEEEEecCCCCCceeEEE-ecChhhHHHHHHHhc
Confidence 6999999999999 7888 999999999987444
No 21
>4g9s_B Inhibitor of G-type lysozyme, goose-type lysozyme; hydrolase inhibitor, hydrolase-hydrolase inhibitor; HET: FLC; 0.95A {Escherichia coli} PDB: 4dy3_A* 4dxz_A* 4dy5_A
Probab=43.81 E-value=47 Score=22.31 Aligned_cols=39 Identities=15% Similarity=0.041 Sum_probs=31.4
Q ss_pred ccCCCCCceEEEEEeEEeeeCcccCCCceEEEEecCCCeEEEEc
Q psy6196 33 KSPFTPAVGYYYYCGRNIQENQYVKMGAYHTLDLELNRKFELSK 76 (146)
Q Consensus 33 ~vef~~~~~~LRI~G~i~~~~e~v~~G~yHTl~i~~~~~~tI~K 76 (146)
.|.|.+.++.-.|+|++.-. + ..-.++....|+.++|.-
T Consensus 6 ~V~F~~G~~~a~v~G~I~g~-~----~~~Y~~~a~aGQ~l~v~l 44 (111)
T 4g9s_B 6 NVEFRKGHSSAQYSGEIKGY-D----YDTYTFYAKKGQKVHVSI 44 (111)
T ss_dssp ECCCCTTCSEEEEEEEEETT-C----CEEEEEEECTTCEEEEEE
T ss_pred EEEECCCCCCeEEEEEEeCC-C----ceEEEEEecCCCEEEEEE
Confidence 68999999999999999753 2 245788888999888853
No 22
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=25.29 E-value=64 Score=22.44 Aligned_cols=45 Identities=11% Similarity=0.143 Sum_probs=36.4
Q ss_pred EEEecCCCeEEEEcCCCChHHHHHHHHHhcccCCccEEEEEEecCeE
Q psy6196 63 TLDLELNRKFELSKPEWDSIALERIEVACNIEKTADVAAVMMQEGLA 109 (146)
Q Consensus 63 Tl~i~~~~~~tI~K~~Wd~~~le~L~eA~~~~~~~~v~~v~~~eG~A 109 (146)
++.+.+|.-+-|--..|+....+.|+++... -++|+-|.+..|..
T Consensus 12 ~~~~~~G~il~v~~l~~~~~sredLke~F~~--~G~V~~Vd~~~g~~ 56 (121)
T 1owx_A 12 SLEEKIGCLLKFSGDLDDQTCREDLHILFSN--HGEIKWIDFVRGAK 56 (121)
T ss_dssp CCSCCCCCEEEEEESCCSSCCHHHHHHHTCS--SCCEEEEECCTTCS
T ss_pred cccccCCeEEEEecCCCCcCCHHHHHHHHHh--cCCEEEEEEecCCC
Confidence 5778888888888777887789999998864 67899998876665
No 23
>1qxf_A GR2, 30S ribosomal protein S27E; structural genomics, beta sheet, PSI, protein structure initiative; NMR {Archaeoglobus fulgidus} SCOP: g.41.8.4
Probab=23.74 E-value=20 Score=22.89 Aligned_cols=27 Identities=15% Similarity=0.070 Sum_probs=19.4
Q ss_pred CCCCceEEEEEeEEeeeCcccCCCceE
Q psy6196 36 FTPAVGYYYYCGRNIQENQYVKMGAYH 62 (146)
Q Consensus 36 f~~~~~~LRI~G~i~~~~e~v~~G~yH 62 (146)
=+|-++.-|++|.+++.-|.+.+-.||
T Consensus 37 ~~PTGGKA~l~~~i~e~le~~~~~~~~ 63 (66)
T 1qxf_A 37 AEPTGGKGNIKAEIIEYVDQIELEHHH 63 (66)
T ss_dssp EECCSSSCEECSEEEECCSCCC-----
T ss_pred eecCCcceeeehhHHhhhhheeeeecc
Confidence 468899999999999988888774443
No 24
>4dzg_A PLIG; lysozyme inhibitor, G-type lysozyme binding, hydrolase inhib; HET: MLY; 2.02A {Aeromonas hydrophila subsp}
Probab=21.22 E-value=30 Score=23.76 Aligned_cols=20 Identities=10% Similarity=0.062 Sum_probs=16.0
Q ss_pred cccCCCCCceEEEEEeEEee
Q psy6196 32 LKSPFTPAVGYYYYCGRNIQ 51 (146)
Q Consensus 32 ~~vef~~~~~~LRI~G~i~~ 51 (146)
+.|.|.+.++...|+|++..
T Consensus 7 ~~V~F~~G~~~~~v~G~I~g 26 (114)
T 4dzg_A 7 VPVQFAXGAHSAQLXGSFTG 26 (114)
T ss_dssp EECCCC-CCSEEEC-CCCBT
T ss_pred EEEEEccCCCceEEeEEecC
Confidence 47899999999999999975
Done!