RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy6196
         (146 letters)



>d2vgna1 b.38.4.1 (A:1-135) Dom34 {Saccharomyces cerevisiae [TaxId:
           4932]}
          Length = 135

 Score = 70.2 bits (172), Expect = 5e-17
 Identities = 13/62 (20%), Positives = 24/62 (38%), Gaps = 5/62 (8%)

Query: 36  FTPAVGYYYYCGRNIQE-----NQYVKMGAYHTLDLELNRKFELSKPEWDSIALERIEVA 90
           F     Y  Y G  + +     N  + +G Y +  L+    F + K  ++    + +  A
Sbjct: 74  FDMKDEYLKYKGVTVTDESGASNVDIPVGKYLSFTLDYVYPFTIIKQNFNKFMQKLLNEA 133

Query: 91  CN 92
           CN
Sbjct: 134 CN 135



 Score = 46.0 bits (109), Expect = 1e-07
 Identities = 5/30 (16%), Positives = 12/30 (40%)

Query: 1   MGAYHTLDLELNRKFELSKPEWDSLYTARI 30
           +G Y +  L+    F + K  ++      +
Sbjct: 101 VGKYLSFTLDYVYPFTIIKQNFNKFMQKLL 130


>d2vgna2 c.55.4.2 (A:136-277) Dom34 {Saccharomyces cerevisiae
           [TaxId: 4932]}
          Length = 142

 Score = 69.8 bits (171), Expect = 9e-17
 Identities = 19/43 (44%), Positives = 35/43 (81%)

Query: 93  IEKTADVAAVMMQEGLANIMLITASMSLVRTKIETNIPRKRRG 135
           IE  +D AAV++QEG+A++ L+T+S ++++ KIE ++P+K+R 
Sbjct: 1   IEYKSDTAAVVLQEGIAHVCLVTSSSTILKQKIEYSMPKKKRT 43


>d2qi2a1 b.38.4.1 (A:1-126) Cell division protein pelota
           {Thermoplasma acidophilum [TaxId: 2303]}
          Length = 126

 Score = 62.1 bits (151), Expect = 5e-14
 Identities = 10/57 (17%), Positives = 26/57 (45%), Gaps = 2/57 (3%)

Query: 36  FTPAVGYYYYCGRNIQENQYVKMGAYHTLDLELNRKFELSKPEWDSIALERIEVACN 92
           F          G  I+  +  K G + ++ + ++ +  ++K EWD   ++ ++ A +
Sbjct: 72  FQDFDNRLRILGTVIEGPEDTK-GKHQSITVTVDSEISITK-EWDDQHIDLLKEATD 126



 Score = 40.1 bits (94), Expect = 1e-05
 Identities = 5/30 (16%), Positives = 16/30 (53%), Gaps = 1/30 (3%)

Query: 1   MGAYHTLDLELNRKFELSKPEWDSLYTARI 30
            G + ++ + ++ +  ++K EWD  +   +
Sbjct: 93  KGKHQSITVTVDSEISITK-EWDDQHIDLL 121


>d2qi2a2 c.55.4.2 (A:127-243) Cell division protein pelota
           {Thermoplasma acidophilum [TaxId: 2303]}
          Length = 117

 Score = 38.2 bits (89), Expect = 5e-05
 Identities = 9/43 (20%), Positives = 12/43 (27%)

Query: 94  EKTADVAAVMMQEGLANIMLITASMSLVRTKIETNIPRKRRGY 136
           +      AV M E  A I LI          + +    K    
Sbjct: 2   KYVTVYTAVAMDEDEAQIFLIHPYGIQQVGTVYSGRSGKYAEG 44


>d1by5a_ f.4.3.3 (A:) Ferric hydroxamate uptake receptor FhuA
           {Escherichia coli [TaxId: 562]}
          Length = 697

 Score = 27.1 bits (58), Expect = 1.0
 Identities = 11/47 (23%), Positives = 15/47 (31%)

Query: 26  YTARIGLKSPFTPAVGYYYYCGRNIQENQYVKMGAYHTLDLELNRKF 72
           YT   G  S  T   G  Y            K+G+Y  +D  +    
Sbjct: 603 YTFFDGPLSGLTLGTGGRYTGSSYGDPANSFKVGSYTVVDALVRYDL 649


>d2it9a1 d.18.1.3 (A:1-122) Hypothetical protein PMN2A_0962
          {Prochlorococcus marinus [TaxId: 1219]}
          Length = 122

 Score = 25.1 bits (55), Expect = 2.4
 Identities = 6/12 (50%), Positives = 6/12 (50%)

Query: 15 FELSKPEWDSLY 26
           EL K EW  L 
Sbjct: 31 IELDKSEWKILV 42


>d2nvna1 d.18.1.3 (A:1-121) Hypothetical protein syc2379_c
          {Synechococcus sp. pcc 7942 [TaxId: 1140]}
          Length = 121

 Score = 24.3 bits (53), Expect = 4.3
 Identities = 3/12 (25%), Positives = 4/12 (33%)

Query: 15 FELSKPEWDSLY 26
           EL+  E     
Sbjct: 33 VELTAAEMADFC 44


>d1l5ia_ d.89.1.4 (A:) DNA-binding domain of REP protein
          {Geminivirus (Tomato yellow leaf curl virus - sardinia)
          [TaxId: 123735]}
          Length = 118

 Score = 24.0 bits (52), Expect = 5.5
 Identities = 13/76 (17%), Positives = 22/76 (28%), Gaps = 14/76 (18%)

Query: 32 LKSPFTPAVGYYYYCGRNIQENQYVKMGAYHT---------LDLELNRKFELSKPEWDSI 82
          + +  TP    +    R + EN     G  H           +    R F+L  P   + 
Sbjct: 29 ITNLQTPTNKLFIKICRELHEN-----GEPHLHILIQFEGKYNCTNQRFFDLVSPTRSAH 83

Query: 83 ALERIEVACNIEKTAD 98
              I+ A +      
Sbjct: 84 FHPNIQGAKSSSDVKS 99


>d1p0ia_ c.69.1.1 (A:) Butyryl cholinesterase {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 526

 Score = 24.3 bits (51), Expect = 8.0
 Identities = 6/25 (24%), Positives = 12/25 (48%)

Query: 42  YYYYCGRNIQENQYVKMGAYHTLDL 66
           +YY+  R+ +      MG  H  ++
Sbjct: 415 FYYFEHRSSKLPWPEWMGVMHGYEI 439


>d2gufa1 f.4.3.3 (A:4-594) Outer membrane cobalamin transporter BtuB
           {Escherichia coli [TaxId: 562]}
          Length = 591

 Score = 24.1 bits (50), Expect = 9.9
 Identities = 9/33 (27%), Positives = 12/33 (36%)

Query: 40  VGYYYYCGRNIQENQYVKMGAYHTLDLELNRKF 72
           +G  Y    +    Q VKMG     DL +    
Sbjct: 520 LGTRYDKDYSSYPYQTVKMGGVSLWDLAVAYPV 552


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.136    0.406 

Gapped
Lambda     K      H
   0.267   0.0643    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 536,765
Number of extensions: 21999
Number of successful extensions: 56
Number of sequences better than 10.0: 1
Number of HSP's gapped: 54
Number of HSP's successfully gapped: 14
Length of query: 146
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 69
Effective length of database: 1,350,386
Effective search space: 93176634
Effective search space used: 93176634
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (22.8 bits)