BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6198
(111 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2Q3X|A Chain A, The Rim1alpha C2b Domain
pdb|2Q3X|B Chain B, The Rim1alpha C2b Domain
Length = 171
Score = 54.3 bits (129), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 35/50 (70%)
Query: 62 GPGQVVGRQVLGLPSKGEVQLSLNNVKGCLVVEVIRAKNLQPKPDSKTLP 111
GP Q+VGRQ L P+ G++Q+ + KG L VEVIRA++L KP SK+ P
Sbjct: 3 GPAQLVGRQTLATPAXGDIQIGXEDKKGQLEVEVIRARSLTQKPGSKSTP 52
>pdb|1RH8|A Chain A, Three-Dimensional Structure Of The Calcium-Free Piccolo
C2a- Domain
Length = 142
Score = 32.3 bits (72), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 23/33 (69%)
Query: 75 PSKGEVQLSLNNVKGCLVVEVIRAKNLQPKPDS 107
P GE+QL +N G L++ +++A+NL P+ ++
Sbjct: 4 PITGEIQLQINYDLGNLIIHILQARNLVPRDNN 36
>pdb|1G20|B Chain B, Mgatp-Bound And Nucleotide-Free Structures Of A
Nitrogenase Protein Complex Between Leu127del-Fe Protein
And The Mofe Protein
pdb|1G20|D Chain D, Mgatp-Bound And Nucleotide-Free Structures Of A
Nitrogenase Protein Complex Between Leu127del-Fe Protein
And The Mofe Protein
pdb|1G21|B Chain B, Mgatp-Bound And Nucleotide-Free Structures Of A
Nitrogenase Protein Complex Between Leu127del-Fe Protein
And The Mofe Protein
pdb|1G21|D Chain D, Mgatp-Bound And Nucleotide-Free Structures Of A
Nitrogenase Protein Complex Between Leu127del-Fe Protein
And The Mofe Protein
pdb|1FP4|B Chain B, Crystal Structure Of The Alpha-H195q Mutant Of Nitrogenase
pdb|1FP4|D Chain D, Crystal Structure Of The Alpha-H195q Mutant Of Nitrogenase
pdb|3U7Q|B Chain B, A. Vinelandii Nitrogenase Mofe Protein At Atomic
Resolution
pdb|3U7Q|D Chain D, A. Vinelandii Nitrogenase Mofe Protein At Atomic
Resolution
Length = 523
Score = 28.1 bits (61), Expect = 1.2, Method: Composition-based stats.
Identities = 14/41 (34%), Positives = 18/41 (43%)
Query: 22 FINKSKGPNISPCGTPISFSWTPTLKGSDSGQLSEFIEGLG 62
FIN SK P P+ F+ TP+ GS EG+
Sbjct: 165 FINNSKKEGFIPDEFPVPFAHTPSFVGSHVTGWDNMFEGIA 205
>pdb|3MIN|B Chain B, Nitrogenase Mofe Protein From Azotobacter Vinelandii,
Oxidized State
pdb|3MIN|D Chain D, Nitrogenase Mofe Protein From Azotobacter Vinelandii,
Oxidized State
pdb|2MIN|B Chain B, Nitrogenase Mofe Protein From Azotobacter Vinelandii,
Oxidized State
pdb|2MIN|D Chain D, Nitrogenase Mofe Protein From Azotobacter Vinelandii,
Oxidized State
pdb|1N2C|B Chain B, Nitrogenase Complex From Azotobacter Vinelandii Stabilized
By Adp-Tetrafluoroaluminate
pdb|1N2C|D Chain D, Nitrogenase Complex From Azotobacter Vinelandii Stabilized
By Adp-Tetrafluoroaluminate
pdb|1L5H|B Chain B, Femo-Cofactor Deficient Nitrogenase Mofe Protein
pdb|1M1N|B Chain B, Nitrogenase Mofe Protein From Azotobacter Vinelandii
pdb|1M1N|D Chain D, Nitrogenase Mofe Protein From Azotobacter Vinelandii
pdb|1M1N|F Chain F, Nitrogenase Mofe Protein From Azotobacter Vinelandii
pdb|1M1N|H Chain H, Nitrogenase Mofe Protein From Azotobacter Vinelandii
pdb|1M1Y|B Chain B, Chemical Crosslink Of Nitrogenase Mofe Protein And Fe
Protein
pdb|1M1Y|D Chain D, Chemical Crosslink Of Nitrogenase Mofe Protein And Fe
Protein
pdb|1M1Y|J Chain J, Chemical Crosslink Of Nitrogenase Mofe Protein And Fe
Protein
pdb|1M1Y|L Chain L, Chemical Crosslink Of Nitrogenase Mofe Protein And Fe
Protein
pdb|1M34|B Chain B, Nitrogenase Complex From Azotobacter Vinelandii Stabilized
By Adp- Tetrafluoroaluminate
pdb|1M34|D Chain D, Nitrogenase Complex From Azotobacter Vinelandii Stabilized
By Adp- Tetrafluoroaluminate
pdb|1M34|J Chain J, Nitrogenase Complex From Azotobacter Vinelandii Stabilized
By Adp- Tetrafluoroaluminate
pdb|1M34|L Chain L, Nitrogenase Complex From Azotobacter Vinelandii Stabilized
By Adp- Tetrafluoroaluminate
pdb|2AFH|B Chain B, Crystal Structure Of Nucleotide-Free Av2-Av1 Complex
pdb|2AFH|D Chain D, Crystal Structure Of Nucleotide-Free Av2-Av1 Complex
pdb|2AFI|B Chain B, Crystal Structure Of Mgadp Bound Av2-Av1 Complex
pdb|2AFI|D Chain D, Crystal Structure Of Mgadp Bound Av2-Av1 Complex
pdb|2AFI|J Chain J, Crystal Structure Of Mgadp Bound Av2-Av1 Complex
pdb|2AFI|L Chain L, Crystal Structure Of Mgadp Bound Av2-Av1 Complex
pdb|2AFK|B Chain B, Crystal Structure Of Mgamppcp-Bound Av2-Av1 Complex
pdb|2AFK|D Chain D, Crystal Structure Of Mgamppcp-Bound Av2-Av1 Complex
pdb|3K1A|B Chain B, Insights Into Substrate Binding At Femo-Cofactor In
Nitrogenase From The Structure Of An Alpha-70ile Mofe
Protein Variant
pdb|3K1A|D Chain D, Insights Into Substrate Binding At Femo-Cofactor In
Nitrogenase From The Structure Of An Alpha-70ile Mofe
Protein Variant
Length = 522
Score = 28.1 bits (61), Expect = 1.2, Method: Composition-based stats.
Identities = 14/41 (34%), Positives = 18/41 (43%)
Query: 22 FINKSKGPNISPCGTPISFSWTPTLKGSDSGQLSEFIEGLG 62
FIN SK P P+ F+ TP+ GS EG+
Sbjct: 164 FINNSKKEGFIPDEFPVPFAHTPSFVGSHVTGWDNMFEGIA 204
>pdb|2EIX|A Chain A, The Structure Of Physarum Polycephalum Cytochrome B5
Reductase
pdb|2EIX|B Chain B, The Structure Of Physarum Polycephalum Cytochrome B5
Reductase
Length = 243
Score = 25.4 bits (54), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 4/43 (9%)
Query: 46 LKGSDSGQLSEFIEGLGPGQVVGRQVLGLPSKGEVQLSLNNVK 88
+K + GQ+S++I+ L PG + QV G KG+ N VK
Sbjct: 79 IKVYEKGQMSQYIDHLNPGDFL--QVRG--PKGQFDYKPNMVK 117
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.135 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,411,739
Number of Sequences: 62578
Number of extensions: 133404
Number of successful extensions: 567
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 562
Number of HSP's gapped (non-prelim): 21
length of query: 111
length of database: 14,973,337
effective HSP length: 75
effective length of query: 36
effective length of database: 10,279,987
effective search space: 370079532
effective search space used: 370079532
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 45 (21.9 bits)