BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6198
(111 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q86UR5|RIMS1_HUMAN Regulating synaptic membrane exocytosis protein 1 OS=Homo sapiens
GN=RIMS1 PE=1 SV=1
Length = 1692
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 34/64 (53%), Positives = 48/64 (75%), Gaps = 1/64 (1%)
Query: 48 GSDSGQLSEFIEGLGPGQVVGRQVLGLPSKGEVQLSLNNVKGCLVVEVIRAKNLQPKPDS 107
G+DS Q S+F++GLGP Q+VGRQ L P+ G++Q+ + + KG L VEVIRA++L KP S
Sbjct: 1511 GADS-QFSDFLDGLGPAQLVGRQTLATPAMGDIQIGMEDKKGQLEVEVIRARSLTQKPGS 1569
Query: 108 KTLP 111
K+ P
Sbjct: 1570 KSTP 1573
>sp|Q9JIR3|RIMS3_RAT Regulating synaptic membrane exocytosis protein 3 OS=Rattus
norvegicus GN=Rims3 PE=1 SV=1
Length = 307
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/68 (51%), Positives = 48/68 (70%), Gaps = 1/68 (1%)
Query: 44 PTLKGSDSGQLSEFIEGLGPGQVVGRQVLGLPSKGEVQLSLNNVKGCLVVEVIRAKNLQP 103
PT G++S Q S+F++GLGP Q+VGRQ L P G+V +++ + G L VEVI A+ L P
Sbjct: 124 PTRLGAES-QFSDFLDGLGPAQIVGRQTLATPPMGDVHIAIMDRSGQLEVEVIEARGLTP 182
Query: 104 KPDSKTLP 111
KP SK+LP
Sbjct: 183 KPGSKSLP 190
>sp|Q9JIS1|RIMS2_RAT Regulating synaptic membrane exocytosis protein 2 OS=Rattus
norvegicus GN=Rims2 PE=1 SV=1
Length = 1555
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 33/68 (48%), Positives = 48/68 (70%)
Query: 44 PTLKGSDSGQLSEFIEGLGPGQVVGRQVLGLPSKGEVQLSLNNVKGCLVVEVIRAKNLQP 103
P ++ + Q S+F++GLGP Q+VGRQ L P+ G++Q+ + + KG L VE+IRA+ L
Sbjct: 1369 PGVRLASDSQFSDFLDGLGPAQLVGRQTLATPAMGDIQVGMMDKKGQLEVEIIRARGLVV 1428
Query: 104 KPDSKTLP 111
KP SKTLP
Sbjct: 1429 KPGSKTLP 1436
>sp|Q80U57|RIMS3_MOUSE Regulating synaptic membrane exocytosis protein 3 OS=Mus musculus
GN=Rims3 PE=1 SV=2
Length = 307
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/68 (51%), Positives = 48/68 (70%), Gaps = 1/68 (1%)
Query: 44 PTLKGSDSGQLSEFIEGLGPGQVVGRQVLGLPSKGEVQLSLNNVKGCLVVEVIRAKNLQP 103
PT G++S Q S+F++GLGP Q+VGRQ L P G+V +++ + G L VEVI A+ L P
Sbjct: 124 PTRLGAES-QFSDFLDGLGPAQIVGRQTLATPPMGDVHIAIMDRSGQLEVEVIEARGLTP 182
Query: 104 KPDSKTLP 111
KP SK+LP
Sbjct: 183 KPGSKSLP 190
>sp|Q9UQ26|RIMS2_HUMAN Regulating synaptic membrane exocytosis protein 2 OS=Homo sapiens
GN=RIMS2 PE=1 SV=2
Length = 1411
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 33/68 (48%), Positives = 48/68 (70%)
Query: 44 PTLKGSDSGQLSEFIEGLGPGQVVGRQVLGLPSKGEVQLSLNNVKGCLVVEVIRAKNLQP 103
P ++ + Q S+F++GLGP Q+VGRQ L P+ G++Q+ + + KG L VE+IRA+ L
Sbjct: 1225 PGVRLASDSQFSDFLDGLGPAQLVGRQTLATPAMGDIQVGMMDKKGQLEVEIIRARGLVV 1284
Query: 104 KPDSKTLP 111
KP SKTLP
Sbjct: 1285 KPGSKTLP 1292
>sp|Q9EQZ7|RIMS2_MOUSE Regulating synaptic membrane exocytosis protein 2 OS=Mus musculus
GN=Rims2 PE=1 SV=1
Length = 1530
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 33/68 (48%), Positives = 48/68 (70%)
Query: 44 PTLKGSDSGQLSEFIEGLGPGQVVGRQVLGLPSKGEVQLSLNNVKGCLVVEVIRAKNLQP 103
P ++ + Q S+F++GLGP Q+VGRQ L P+ G++Q+ + + KG L VE+IRA+ L
Sbjct: 1344 PGVRLASDSQFSDFLDGLGPAQLVGRQTLATPAMGDIQVGMMDKKGQLEVEIIRARGLVV 1403
Query: 104 KPDSKTLP 111
KP SKTLP
Sbjct: 1404 KPGSKTLP 1411
>sp|Q99NE5|RIMS1_MOUSE Regulating synaptic membrane exocytosis protein 1 OS=Mus musculus
GN=Rims1 PE=1 SV=2
Length = 1463
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 34/64 (53%), Positives = 47/64 (73%), Gaps = 1/64 (1%)
Query: 48 GSDSGQLSEFIEGLGPGQVVGRQVLGLPSKGEVQLSLNNVKGCLVVEVIRAKNLQPKPDS 107
G DS Q S+F++GLGP Q+VGRQ L P+ G++Q+ + + KG L VEVIRA++L KP S
Sbjct: 1282 GPDS-QFSDFLDGLGPAQLVGRQTLATPAMGDIQIGMEDKKGQLEVEVIRARSLTQKPGS 1340
Query: 108 KTLP 111
K+ P
Sbjct: 1341 KSTP 1344
>sp|Q9JIR4|RIMS1_RAT Regulating synaptic membrane exocytosis protein 1 OS=Rattus
norvegicus GN=Rims1 PE=1 SV=1
Length = 1615
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 34/64 (53%), Positives = 47/64 (73%), Gaps = 1/64 (1%)
Query: 48 GSDSGQLSEFIEGLGPGQVVGRQVLGLPSKGEVQLSLNNVKGCLVVEVIRAKNLQPKPDS 107
G DS Q S+F++GLGP Q+VGRQ L P+ G++Q+ + + KG L VEVIRA++L KP S
Sbjct: 1434 GPDS-QFSDFLDGLGPAQLVGRQTLATPAMGDIQIGMEDKKGQLEVEVIRARSLTQKPGS 1492
Query: 108 KTLP 111
K+ P
Sbjct: 1493 KSTP 1496
>sp|Q9UJD0|RIMS3_HUMAN Regulating synaptic membrane exocytosis protein 3 OS=Homo sapiens
GN=RIMS3 PE=1 SV=1
Length = 308
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 33/68 (48%), Positives = 45/68 (66%)
Query: 44 PTLKGSDSGQLSEFIEGLGPGQVVGRQVLGLPSKGEVQLSLNNVKGCLVVEVIRAKNLQP 103
PT + Q S+F++GLGP Q+VGRQ L P G+V +++ + G L VEVI A+ L P
Sbjct: 124 PTTRLGAESQFSDFLDGLGPAQIVGRQTLATPPMGDVHIAIMDRSGQLEVEVIEARGLTP 183
Query: 104 KPDSKTLP 111
KP SK+LP
Sbjct: 184 KPGSKSLP 191
>sp|Q22366|RIM_CAEEL Rab-3-interacting molecule unc-10 OS=Caenorhabditis elegans GN=unc-10
PE=1 SV=2
Length = 1563
Score = 63.9 bits (154), Expect = 3e-10, Method: Composition-based stats.
Identities = 34/70 (48%), Positives = 43/70 (61%), Gaps = 3/70 (4%)
Query: 42 WTPTLKGSDSGQLSEFIEGLGPGQVVGRQVLGLPSKGEVQLSLNNVKGCLVVEVIRAKNL 101
W P L G L F++ LGPGQVVGRQVL P GE+Q++L + + VE+I+AKNL
Sbjct: 1386 WLPVLA---DGPLGTFVDNLGPGQVVGRQVLASPVLGEIQIALMAGRSGIDVEIIKAKNL 1442
Query: 102 QPKPDSKTLP 111
KP K P
Sbjct: 1443 VVKPGVKVCP 1452
>sp|P60191|RIMS4_MOUSE Regulating synaptic membrane exocytosis protein 4 OS=Mus musculus
GN=Rims4 PE=2 SV=1
Length = 269
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 38/63 (60%)
Query: 49 SDSGQLSEFIEGLGPGQVVGRQVLGLPSKGEVQLSLNNVKGCLVVEVIRAKNLQPKPDSK 108
+ Q S+F+ +GP Q VGRQ L G+V++ L G L V++I+A+ L KP SK
Sbjct: 88 ASDAQFSDFLGSMGPAQFVGRQTLATTPMGDVEIGLQERNGQLEVDIIQARGLTAKPGSK 147
Query: 109 TLP 111
TLP
Sbjct: 148 TLP 150
>sp|Q9H426|RIMS4_HUMAN Regulating synaptic membrane exocytosis protein 4 OS=Homo sapiens
GN=RIMS4 PE=1 SV=3
Length = 269
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 38/63 (60%)
Query: 49 SDSGQLSEFIEGLGPGQVVGRQVLGLPSKGEVQLSLNNVKGCLVVEVIRAKNLQPKPDSK 108
+ Q S+F+ +GP Q VGRQ L G+V++ L G L V++I+A+ L KP SK
Sbjct: 88 ASDAQFSDFLGSMGPAQFVGRQTLATTPMGDVEIGLQERNGQLEVDIIQARGLTAKPGSK 147
Query: 109 TLP 111
TLP
Sbjct: 148 TLP 150
>sp|Q8CIX1|RIMS4_RAT Regulating synaptic membrane exocytosis protein 4 OS=Rattus
norvegicus GN=Rims4 PE=1 SV=1
Length = 269
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 37/63 (58%)
Query: 49 SDSGQLSEFIEGLGPGQVVGRQVLGLPSKGEVQLSLNNVKGCLVVEVIRAKNLQPKPDSK 108
+ Q S+F+ +GP Q VGRQ L G V++ L G L V++I+A+ L KP SK
Sbjct: 88 ASDAQFSDFLGSMGPAQFVGRQTLATTPMGGVEIGLQERNGQLEVDIIQARGLTAKPGSK 147
Query: 109 TLP 111
TLP
Sbjct: 148 TLP 150
>sp|B3QP55|NUOD_CHLP8 NADH-quinone oxidoreductase subunit D OS=Chlorobaculum parvum
(strain NCIB 8327) GN=nuoD PE=3 SV=1
Length = 400
Score = 37.0 bits (84), Expect = 0.032, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Query: 11 EPYQILLRSRVFINKSKGPNISPCGTPISFSWT-PTLKGS 49
E Y++L + +F+ ++KG I P I+F+W+ P L+GS
Sbjct: 210 ELYKLLTENEIFVKRTKGIGIMPADVAINFAWSGPMLRGS 249
>sp|A1BF35|NUOD_CHLPD NADH-quinone oxidoreductase subunit D OS=Chlorobium
phaeobacteroides (strain DSM 266) GN=nuoD PE=3 SV=1
Length = 400
Score = 36.6 bits (83), Expect = 0.042, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 11 EPYQILLRSRVFINKSKGPNISPCGTPISFSWT-PTLKGS 49
E YQ+L + +F+ ++KG I P I++ W+ P L+GS
Sbjct: 210 ELYQLLTENEIFVKRTKGIGIMPADVAINYGWSGPMLRGS 249
>sp|B3EI96|NUOD_CHLL2 NADH-quinone oxidoreductase subunit D OS=Chlorobium limicola
(strain DSM 245 / NBRC 103803) GN=nuoD PE=3 SV=1
Length = 395
Score = 35.4 bits (80), Expect = 0.097, Method: Composition-based stats.
Identities = 14/40 (35%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Query: 11 EPYQILLRSRVFINKSKGPNISPCGTPISFSWT-PTLKGS 49
E Y++L + +F+ ++KG I P I+++W+ P L+GS
Sbjct: 205 ELYKLLTENEIFVKRTKGIGIMPADVAINYAWSGPMLRGS 244
>sp|A4SF45|NUOD_PROVI NADH-quinone oxidoreductase subunit D OS=Prosthecochloris
vibrioformis (strain DSM 265) GN=nuoD PE=3 SV=1
Length = 400
Score = 33.1 bits (74), Expect = 0.51, Method: Composition-based stats.
Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 11 EPYQILLRSRVFINKSKGPNISPCGTPISFSWT-PTLKGS 49
E Q+L + +F+ ++KG I P I++ W+ P L+GS
Sbjct: 210 ELQQLLTENEIFVKRTKGIGIMPADVAINYGWSGPMLRGS 249
>sp|Q9JKS6|PCLO_RAT Protein piccolo OS=Rattus norvegicus GN=Pclo PE=1 SV=1
Length = 5085
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 23/37 (62%)
Query: 68 GRQVLGLPSKGEVQLSLNNVKGCLVVEVIRAKNLQPK 104
G + P GE+QL +N G L++ +++A+NL P+
Sbjct: 4631 GPKAASHPITGEIQLQINYDLGNLIIHILQARNLVPR 4667
>sp|Q8KEC0|NUOD_CHLTE NADH-quinone oxidoreductase subunit D OS=Chlorobium tepidum (strain
ATCC 49652 / DSM 12025 / TLS) GN=nuoD PE=3 SV=2
Length = 400
Score = 31.6 bits (70), Expect = 1.6, Method: Composition-based stats.
Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 11 EPYQILLRSRVFINKSKGPNISPCGTPISFSWT-PTLKGS 49
E YQ+L + +F+ ++ I P I++ W+ P L+GS
Sbjct: 210 ELYQLLTENEIFVKRTYDIGIMPADVAINYGWSGPMLRGS 249
>sp|Q3B4W0|NUOD_PELLD NADH-quinone oxidoreductase subunit D OS=Pelodictyon luteolum
(strain DSM 273) GN=nuoD PE=3 SV=1
Length = 395
Score = 31.6 bits (70), Expect = 1.6, Method: Composition-based stats.
Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 11 EPYQILLRSRVFINKSKGPNISPCGTPISFSWT-PTLKGS 49
E ++L + +F+ ++KG I P I++ W+ P L+GS
Sbjct: 205 ELSRLLTENEIFVKRTKGIGIMPADVAINYGWSGPMLRGS 244
>sp|A0JMP0|ATHL1_DANRE Acid trehalase-like protein 1 OS=Danio rerio GN=athl1 PE=2 SV=1
Length = 655
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 30/68 (44%)
Query: 24 NKSKGPNISPCGTPISFSWTPTLKGSDSGQLSEFIEGLGPGQVVGRQVLGLPSKGEVQLS 83
NK K ++ G P++F +P ++ +D + LGP G LG GE + +
Sbjct: 453 NKVKQADVVLLGFPLAFPMSPEIRRNDLEMYEAVTDPLGPAMTWGMFALGWLELGEAEKA 512
Query: 84 LNNVKGCL 91
++ C
Sbjct: 513 QKLLQKCF 520
>sp|B3EK98|NUOD_CHLPB NADH-quinone oxidoreductase subunit D OS=Chlorobium
phaeobacteroides (strain BS1) GN=nuoD PE=3 SV=1
Length = 400
Score = 30.8 bits (68), Expect = 2.5, Method: Composition-based stats.
Identities = 12/40 (30%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 11 EPYQILLRSRVFINKSKGPNISPCGTPISFSWT-PTLKGS 49
E ++L + +F+ ++KG + P I++ W+ P L+GS
Sbjct: 210 ELQKLLTENEIFVKRTKGVGMMPADVAINYGWSGPMLRGS 249
>sp|Q9QYX7|PCLO_MOUSE Protein piccolo OS=Mus musculus GN=Pclo PE=1 SV=4
Length = 5068
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 21/30 (70%)
Query: 75 PSKGEVQLSLNNVKGCLVVEVIRAKNLQPK 104
P GE+QL +N G L++ +++A+NL P+
Sbjct: 4621 PITGEIQLQINYDLGNLIIHILQARNLVPR 4650
>sp|Q2W4W1|ZNUC_MAGSA Zinc import ATP-binding protein ZnuC OS=Magnetospirillum magneticum
(strain AMB-1 / ATCC 700264) GN=znuC PE=3 SV=1
Length = 262
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 13/56 (23%)
Query: 51 SGQLSEFIEGLGPGQVVGRQVLGLPSKGEVQLSLNNVKGCLVVEVIRAKNLQPKPD 106
+G+L E ++ +G G V+GRQV+ L S GE+Q V+ A+ L +PD
Sbjct: 98 AGRLEETLDLVGAGHVLGRQVVDL-SGGEMQ------------RVLLARALLRRPD 140
>sp|B4SBZ0|NUOD_PELPB NADH-quinone oxidoreductase subunit D OS=Pelodictyon
phaeoclathratiforme (strain DSM 5477 / BU-1) GN=nuoD
PE=3 SV=1
Length = 400
Score = 30.0 bits (66), Expect = 4.7, Method: Composition-based stats.
Identities = 11/36 (30%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 15 ILLRSRVFINKSKGPNISPCGTPISFSWT-PTLKGS 49
+L + +F+ +++G I P I++ W+ P L+GS
Sbjct: 214 LLTENEIFVKRTRGIGIMPADVAINYGWSGPMLRGS 249
>sp|Q03966|LAC1_CRYPA Laccase OS=Cryphonectria parasitica GN=LAC-1 PE=3 SV=1
Length = 591
Score = 29.3 bits (64), Expect = 7.4, Method: Composition-based stats.
Identities = 22/74 (29%), Positives = 31/74 (41%), Gaps = 14/74 (18%)
Query: 6 AMGNWEPYQILLRSRVFINKSKGPNISPCG-TPISFSWTPTLKGSDSGQLSEFIEGLGPG 64
A GN P+ I L F+ + PN+SP TP +F+ S + L
Sbjct: 456 ATGNALPHPIHLHGHDFVVLGRSPNVSPTAQTPYTFT-------------SSDVSSLNGN 502
Query: 65 QVVGRQVLGLPSKG 78
+ R V+ LP KG
Sbjct: 503 NPIRRDVVMLPPKG 516
>sp|P26027|NODU_BRAJA Nodulation protein U OS=Bradyrhizobium japonicum (strain USDA 110)
GN=nodU PE=3 SV=1
Length = 569
Score = 28.9 bits (63), Expect = 8.8, Method: Composition-based stats.
Identities = 23/89 (25%), Positives = 39/89 (43%), Gaps = 6/89 (6%)
Query: 3 SAAAMGNWEPYQILLRSRVFINKSKGP---NISPCGTPISFSWTPTLKGSDSGQLSEFIE 59
+ AA +EP + + S + +S+ P +PC P L +
Sbjct: 349 AMAAQDGFEPLEWSVYSGPALQESEVPPDWEAAPCSLP---ELASILADNKPVIFLSGCA 405
Query: 60 GLGPGQVVGRQVLGLPSKGEVQLSLNNVK 88
GLGP + GR +L P+ E++ LN++K
Sbjct: 406 GLGPRALGGRSILAAPTSPEMKDHLNDIK 434
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.135 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,931,527
Number of Sequences: 539616
Number of extensions: 1710849
Number of successful extensions: 2567
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 2544
Number of HSP's gapped (non-prelim): 31
length of query: 111
length of database: 191,569,459
effective HSP length: 79
effective length of query: 32
effective length of database: 148,939,795
effective search space: 4766073440
effective search space used: 4766073440
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)