Query psy6198
Match_columns 111
No_of_seqs 48 out of 50
Neff 2.4
Searched_HMMs 46136
Date Fri Aug 16 20:11:39 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6198.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6198hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2060|consensus 100.0 9.1E-30 2E-34 214.8 4.2 91 17-111 201-291 (405)
2 cd04028 C2B_RIM1alpha C2 domai 99.4 2E-13 4.4E-18 99.5 5.7 46 61-106 1-46 (146)
3 cd04029 C2A_SLP-4_5 C2 domain 93.8 0.14 2.9E-06 35.4 4.5 20 87-106 13-32 (125)
4 cd08389 C2A_Synaptotagmin-14_1 93.3 0.15 3.2E-06 35.1 3.9 17 89-105 16-32 (124)
5 cd04031 C2A_RIM1alpha C2 domai 93.2 0.14 3.1E-06 33.8 3.7 17 88-104 15-31 (125)
6 cd08385 C2A_Synaptotagmin-1-5- 92.6 0.19 4.1E-06 33.6 3.6 18 87-104 14-31 (124)
7 cd08393 C2A_SLP-1_2 C2 domain 92.4 0.3 6.6E-06 33.5 4.5 16 90-105 16-31 (125)
8 cd08392 C2A_SLP-3 C2 domain fi 91.8 0.37 8E-06 33.7 4.4 18 88-105 14-31 (128)
9 cd08388 C2A_Synaptotagmin-4-11 91.0 0.5 1.1E-05 32.7 4.4 19 88-106 15-33 (128)
10 cd04030 C2C_KIAA1228 C2 domain 90.7 0.4 8.7E-06 31.9 3.6 17 89-105 16-32 (127)
11 cd08408 C2B_Synaptotagmin-14_1 90.2 0.48 1E-05 33.6 3.8 18 88-105 14-31 (138)
12 cd08387 C2A_Synaptotagmin-8 C2 88.6 0.65 1.4E-05 31.1 3.3 19 87-105 14-32 (124)
13 cd08406 C2B_Synaptotagmin-12 C 88.5 0.81 1.7E-05 32.6 4.0 18 88-105 14-31 (136)
14 cd04035 C2A_Rabphilin_Doc2 C2 87.9 0.86 1.9E-05 30.4 3.6 18 87-104 13-30 (123)
15 cd08409 C2B_Synaptotagmin-15 C 87.5 1.1 2.3E-05 31.4 4.0 18 88-105 14-31 (137)
16 cd08402 C2B_Synaptotagmin-1 C2 86.9 0.92 2E-05 31.0 3.4 18 87-104 13-30 (136)
17 cd08386 C2A_Synaptotagmin-7 C2 86.5 1.1 2.3E-05 29.9 3.4 17 88-104 15-31 (125)
18 cd08407 C2B_Synaptotagmin-13 C 84.6 1.5 3.2E-05 31.6 3.7 19 87-105 13-31 (138)
19 cd04009 C2B_Munc13-like C2 dom 83.3 1.7 3.8E-05 29.8 3.4 16 89-104 16-31 (133)
20 cd08405 C2B_Synaptotagmin-7 C2 83.3 1.7 3.7E-05 29.7 3.4 18 87-104 13-30 (136)
21 cd08404 C2B_Synaptotagmin-4 C2 79.5 3.1 6.8E-05 28.5 3.6 18 87-104 13-30 (136)
22 cd04020 C2B_SLP_1-2-3-4 C2 dom 78.3 3 6.4E-05 30.4 3.3 17 89-105 27-43 (162)
23 KOG1028|consensus 76.1 4.4 9.6E-05 34.3 4.3 30 78-107 285-316 (421)
24 cd08375 C2_Intersectin C2 doma 74.0 3.9 8.3E-05 28.8 2.9 21 84-104 10-30 (136)
25 cd08676 C2A_Munc13-like C2 dom 56.1 9.3 0.0002 28.1 2.1 17 88-104 27-43 (153)
26 cd04032 C2_Perforin C2 domain 53.5 15 0.00034 26.0 2.8 16 88-103 27-42 (127)
27 PF02120 Flg_hook: Flagellar h 43.0 55 0.0012 20.6 3.9 28 72-99 19-46 (85)
28 KOG1028|consensus 35.8 75 0.0016 27.1 4.7 31 75-105 151-183 (421)
29 COG1261 FlgA Flagellar basal b 34.9 49 0.0011 26.5 3.3 42 60-102 144-201 (220)
30 TIGR00739 yajC preprotein tran 33.3 75 0.0016 21.6 3.6 39 51-95 28-66 (84)
31 PF10033 ATG13: Autophagy-rela 30.1 38 0.00082 26.4 1.9 43 14-57 10-52 (233)
32 COG3144 FliK Flagellar hook-le 25.9 76 0.0016 27.6 3.1 24 75-98 308-331 (417)
33 PRK14347 lipoate-protein ligas 25.6 25 0.00055 27.9 0.2 44 19-70 42-85 (209)
34 PRK14341 lipoate-protein ligas 25.2 26 0.00056 27.8 0.2 24 43-70 64-87 (213)
35 TIGR00214 lipB lipoate-protein 24.6 27 0.00059 27.1 0.2 22 45-70 46-67 (184)
36 PRK14348 lipoate-protein ligas 23.6 29 0.00063 27.7 0.2 24 43-70 73-96 (221)
37 KOG0696|consensus 23.0 80 0.0017 29.4 2.9 31 74-104 165-195 (683)
38 PRK12618 flgA flagellar basal 22.8 1.3E+02 0.0028 22.1 3.5 34 60-94 64-100 (141)
39 PRK14342 lipoate-protein ligas 21.8 33 0.00072 27.2 0.2 24 43-70 64-87 (213)
40 PRK14345 lipoate-protein ligas 21.8 33 0.00071 27.6 0.2 24 43-70 70-93 (234)
41 PF00970 FAD_binding_6: Oxidor 21.6 78 0.0017 20.1 1.9 23 45-67 66-88 (99)
42 COG0279 GmhA Phosphoheptose is 21.2 42 0.00092 26.7 0.7 48 42-89 73-121 (176)
No 1
>KOG2060|consensus
Probab=99.96 E-value=9.1e-30 Score=214.79 Aligned_cols=91 Identities=40% Similarity=0.586 Sum_probs=84.9
Q ss_pred eeeeeeecCCCCCCCCCCCCCCccccccceecCCCCchhhhhhCCCCCcccCceeccCCCccceEEEEEeecceeEEEEE
Q psy6198 17 LRSRVFINKSKGPNISPCGTPISFSWTPTLKGSDSGQLSEFIEGLGPGQVVGRQVLGLPSKGEVQLSLNNVKGCLVVEVI 96 (111)
Q Consensus 17 ~~~~~~~~~s~~~~~s~~g~~~g~~~~P~lrl~~~gqlsdFldgLGPGQvVGRQ~Lasp~lGdIqLgl~~~kG~LEVEVI 96 (111)
-|++-+||+|.++.-|. +|++|||++|+.+|++|++|+|+|||+|+||||+|++|.|||||+++++++|+||||||
T Consensus 201 q~~~es~d~S~~s~~ss----~g~~~~P~~r~~sds~~~~FvDglGP~q~VgRq~la~P~mg~iq~~~~d~~g~l~vEii 276 (405)
T KOG2060|consen 201 QRSLESTDGSINSLESS----EGLRILPGLRLPSDSPRGDFVDGLGPAQLVGRQTLAAPNMGDIQIALMDSKGDLEVEII 276 (405)
T ss_pred cccccccccccccCCcc----ccceecccccccccCchhhhhcccCchhhhhhhhhcCcccccchhhhhcccCceeEEEE
Confidence 35667789999886554 88999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCccCCCCCCCC
Q psy6198 97 RAKNLQPKPDSKTLP 111 (111)
Q Consensus 97 rAR~L~~kpGsK~lP 111 (111)
+||+|++|||+|++|
T Consensus 277 ~ar~l~~k~~~k~~~ 291 (405)
T KOG2060|consen 277 RARGLVVKPGSKSLP 291 (405)
T ss_pred ecccccccCCccccc
Confidence 999999999999976
No 2
>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.43 E-value=2e-13 Score=99.55 Aligned_cols=46 Identities=63% Similarity=0.947 Sum_probs=43.9
Q ss_pred CCCCcccCceeccCCCccceEEEEEeecceeEEEEEEecCCccCCC
Q psy6198 61 LGPGQVVGRQVLGLPSKGEVQLSLNNVKGCLVVEVIRAKNLQPKPD 106 (111)
Q Consensus 61 LGPGQvVGRQ~Lasp~lGdIqLgl~~~kG~LEVEVIrAR~L~~kpG 106 (111)
|||||++|+|+++.+.+|+|+++|.+.++.|+|.||+||+|.++.+
T Consensus 1 ~~~~~~~~~~~~~~~~~G~l~lsl~y~~~~L~V~Vi~ArnL~~~~~ 46 (146)
T cd04028 1 LGPGQLVGRQVLASPSMGDIQLGLYDKKGQLEVEVIRARGLVQKPG 46 (146)
T ss_pred CCcceeeccccccCCCcceEEEEEEeCCCEEEEEEEEeeCCCcccC
Confidence 8999999999999999999999999999999999999999987654
No 3
>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2
Probab=93.82 E-value=0.14 Score=35.40 Aligned_cols=20 Identities=25% Similarity=0.225 Sum_probs=17.4
Q ss_pred ecceeEEEEEEecCCccCCC
Q psy6198 87 VKGCLVVEVIRAKNLQPKPD 106 (111)
Q Consensus 87 ~kG~LEVEVIrAR~L~~kpG 106 (111)
..+.|.|.||+||+|.++..
T Consensus 13 ~~~~L~V~Vi~a~~L~~~~~ 32 (125)
T cd04029 13 KTQSLNVHVKECRNLAYGDE 32 (125)
T ss_pred CCCeEEEEEEEecCCCccCC
Confidence 68999999999999987643
No 4
>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=93.29 E-value=0.15 Score=35.08 Aligned_cols=17 Identities=41% Similarity=0.528 Sum_probs=15.5
Q ss_pred ceeEEEEEEecCCccCC
Q psy6198 89 GCLVVEVIRAKNLQPKP 105 (111)
Q Consensus 89 G~LEVEVIrAR~L~~kp 105 (111)
+.|.|.||+||+|.++.
T Consensus 16 ~~L~V~Vi~a~nL~~~~ 32 (124)
T cd08389 16 RKLTVTVIRAQDIPTKD 32 (124)
T ss_pred CEEEEEEEEecCCCchh
Confidence 89999999999998764
No 5
>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=93.20 E-value=0.14 Score=33.82 Aligned_cols=17 Identities=35% Similarity=0.737 Sum_probs=15.1
Q ss_pred cceeEEEEEEecCCccC
Q psy6198 88 KGCLVVEVIRAKNLQPK 104 (111)
Q Consensus 88 kG~LEVEVIrAR~L~~k 104 (111)
+++|.|.||+||+|.+.
T Consensus 15 ~~~L~V~vi~a~~L~~~ 31 (125)
T cd04031 15 TSQLIVTVLQARDLPPR 31 (125)
T ss_pred CCEEEEEEEEecCCCCc
Confidence 49999999999999765
No 6
>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and
Probab=92.64 E-value=0.19 Score=33.57 Aligned_cols=18 Identities=28% Similarity=0.348 Sum_probs=16.2
Q ss_pred ecceeEEEEEEecCCccC
Q psy6198 87 VKGCLVVEVIRAKNLQPK 104 (111)
Q Consensus 87 ~kG~LEVEVIrAR~L~~k 104 (111)
..+.|+|+||+|++|.++
T Consensus 14 ~~~~L~V~v~~a~~L~~~ 31 (124)
T cd08385 14 QSNQLTVGIIQAADLPAM 31 (124)
T ss_pred CCCEEEEEEEEeeCCCCc
Confidence 779999999999999765
No 7
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety
Probab=92.43 E-value=0.3 Score=33.45 Aligned_cols=16 Identities=31% Similarity=0.395 Sum_probs=14.6
Q ss_pred eeEEEEEEecCCccCC
Q psy6198 90 CLVVEVIRAKNLQPKP 105 (111)
Q Consensus 90 ~LEVEVIrAR~L~~kp 105 (111)
.|.|.||+||+|.++-
T Consensus 16 ~L~V~vi~a~~L~~~d 31 (125)
T cd08393 16 ELHVHVIQCQDLAAAD 31 (125)
T ss_pred EEEEEEEEeCCCCCcC
Confidence 8999999999998764
No 8
>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids
Probab=91.77 E-value=0.37 Score=33.75 Aligned_cols=18 Identities=22% Similarity=0.434 Sum_probs=15.9
Q ss_pred cceeEEEEEEecCCccCC
Q psy6198 88 KGCLVVEVIRAKNLQPKP 105 (111)
Q Consensus 88 kG~LEVEVIrAR~L~~kp 105 (111)
.+.|.|.|++||+|.++.
T Consensus 14 ~~~L~V~V~~a~nL~~~d 31 (128)
T cd08392 14 TSCLEITIKACRNLAYGD 31 (128)
T ss_pred CCEEEEEEEecCCCCccC
Confidence 388999999999998764
No 9
>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence
Probab=91.02 E-value=0.5 Score=32.70 Aligned_cols=19 Identities=26% Similarity=0.532 Sum_probs=16.5
Q ss_pred cceeEEEEEEecCCccCCC
Q psy6198 88 KGCLVVEVIRAKNLQPKPD 106 (111)
Q Consensus 88 kG~LEVEVIrAR~L~~kpG 106 (111)
.+.|.|.||+||+|.++.+
T Consensus 15 ~~~L~V~Vi~a~~L~~~~~ 33 (128)
T cd08388 15 KKALLVNIIECRDLPAMDE 33 (128)
T ss_pred CCEEEEEEEEeECCCCCCC
Confidence 6799999999999987654
No 10
>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins. KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1
Probab=90.69 E-value=0.4 Score=31.87 Aligned_cols=17 Identities=35% Similarity=0.499 Sum_probs=15.1
Q ss_pred ceeEEEEEEecCCccCC
Q psy6198 89 GCLVVEVIRAKNLQPKP 105 (111)
Q Consensus 89 G~LEVEVIrAR~L~~kp 105 (111)
+.|+|.||+||+|..+-
T Consensus 16 ~~L~V~vi~a~~L~~~~ 32 (127)
T cd04030 16 QKLIVTVHKCRNLPPCD 32 (127)
T ss_pred CEEEEEEEEEECCCCcc
Confidence 99999999999997653
No 11
>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=90.18 E-value=0.48 Score=33.55 Aligned_cols=18 Identities=39% Similarity=0.553 Sum_probs=15.9
Q ss_pred cceeEEEEEEecCCccCC
Q psy6198 88 KGCLVVEVIRAKNLQPKP 105 (111)
Q Consensus 88 kG~LEVEVIrAR~L~~kp 105 (111)
.+.|+|.||+||+|.+.-
T Consensus 14 ~~~L~V~VikarnL~~~~ 31 (138)
T cd08408 14 TGRLSVEVIKGSNFKNLA 31 (138)
T ss_pred CCeEEEEEEEecCCCccc
Confidence 599999999999997753
No 12
>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv
Probab=88.62 E-value=0.65 Score=31.08 Aligned_cols=19 Identities=47% Similarity=0.704 Sum_probs=16.0
Q ss_pred ecceeEEEEEEecCCccCC
Q psy6198 87 VKGCLVVEVIRAKNLQPKP 105 (111)
Q Consensus 87 ~kG~LEVEVIrAR~L~~kp 105 (111)
..+.|.|+||+|++|.++-
T Consensus 14 ~~~~L~V~v~~a~~L~~~d 32 (124)
T cd08387 14 DMGILNVKLIQARNLQPRD 32 (124)
T ss_pred CCCEEEEEEEEeeCCCCCC
Confidence 3589999999999997653
No 13
>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl
Probab=88.52 E-value=0.81 Score=32.61 Aligned_cols=18 Identities=33% Similarity=0.322 Sum_probs=15.9
Q ss_pred cceeEEEEEEecCCccCC
Q psy6198 88 KGCLVVEVIRAKNLQPKP 105 (111)
Q Consensus 88 kG~LEVEVIrAR~L~~kp 105 (111)
.+.|.|+||+||+|.+..
T Consensus 14 ~~~L~V~Vi~A~nL~~~~ 31 (136)
T cd08406 14 AERLTVVVVKARNLVWDN 31 (136)
T ss_pred CCEEEEEEEEeeCCCCcc
Confidence 679999999999998764
No 14
>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=87.85 E-value=0.86 Score=30.43 Aligned_cols=18 Identities=33% Similarity=0.481 Sum_probs=15.2
Q ss_pred ecceeEEEEEEecCCccC
Q psy6198 87 VKGCLVVEVIRAKNLQPK 104 (111)
Q Consensus 87 ~kG~LEVEVIrAR~L~~k 104 (111)
.++.|+|+|++||+|.+.
T Consensus 13 ~~~~L~V~v~~a~~L~~~ 30 (123)
T cd04035 13 ANSALHCTIIRAKGLKAM 30 (123)
T ss_pred CCCEEEEEEEEeeCCCCC
Confidence 557999999999999753
No 15
>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id
Probab=87.52 E-value=1.1 Score=31.42 Aligned_cols=18 Identities=33% Similarity=0.381 Sum_probs=15.7
Q ss_pred cceeEEEEEEecCCccCC
Q psy6198 88 KGCLVVEVIRAKNLQPKP 105 (111)
Q Consensus 88 kG~LEVEVIrAR~L~~kp 105 (111)
.+.|+|.||+||+|.+..
T Consensus 14 ~~~L~V~V~~a~nL~~~~ 31 (137)
T cd08409 14 LNRLTVVVLRARGLRQLD 31 (137)
T ss_pred CCeEEEEEEEecCCCccc
Confidence 589999999999997653
No 16
>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:
Probab=86.93 E-value=0.92 Score=31.00 Aligned_cols=18 Identities=39% Similarity=0.521 Sum_probs=15.9
Q ss_pred ecceeEEEEEEecCCccC
Q psy6198 87 VKGCLVVEVIRAKNLQPK 104 (111)
Q Consensus 87 ~kG~LEVEVIrAR~L~~k 104 (111)
..+.|+|.||+||+|..+
T Consensus 13 ~~~~l~V~Vi~a~~L~~~ 30 (136)
T cd08402 13 TAGKLTVVILEAKNLKKM 30 (136)
T ss_pred CCCeEEEEEEEeeCCCcc
Confidence 678999999999999754
No 17
>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=86.46 E-value=1.1 Score=29.87 Aligned_cols=17 Identities=24% Similarity=0.503 Sum_probs=15.2
Q ss_pred cceeEEEEEEecCCccC
Q psy6198 88 KGCLVVEVIRAKNLQPK 104 (111)
Q Consensus 88 kG~LEVEVIrAR~L~~k 104 (111)
++.|.|.||+|++|..+
T Consensus 15 ~~~L~v~v~~a~~L~~~ 31 (125)
T cd08386 15 ESTLTLKILKAVELPAK 31 (125)
T ss_pred CCEEEEEEEEecCCCCc
Confidence 88999999999999654
No 18
>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy
Probab=84.63 E-value=1.5 Score=31.65 Aligned_cols=19 Identities=42% Similarity=0.538 Sum_probs=16.8
Q ss_pred ecceeEEEEEEecCCccCC
Q psy6198 87 VKGCLVVEVIRAKNLQPKP 105 (111)
Q Consensus 87 ~kG~LEVEVIrAR~L~~kp 105 (111)
..+.|.|.||+||||.+.-
T Consensus 13 ~~~~L~V~V~karnL~~~d 31 (138)
T cd08407 13 AANRLLVVVIKAKNLHSDQ 31 (138)
T ss_pred CCCeEEEEEEEecCCCccc
Confidence 5899999999999998753
No 19
>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s
Probab=83.31 E-value=1.7 Score=29.81 Aligned_cols=16 Identities=44% Similarity=0.648 Sum_probs=14.5
Q ss_pred ceeEEEEEEecCCccC
Q psy6198 89 GCLVVEVIRAKNLQPK 104 (111)
Q Consensus 89 G~LEVEVIrAR~L~~k 104 (111)
+.|.|.||+||+|.+.
T Consensus 16 ~~L~V~Vi~A~~L~~~ 31 (133)
T cd04009 16 QSLRVEILNARNLLPL 31 (133)
T ss_pred CEEEEEEEEeeCCCCc
Confidence 8999999999999764
No 20
>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=83.26 E-value=1.7 Score=29.66 Aligned_cols=18 Identities=28% Similarity=0.519 Sum_probs=15.3
Q ss_pred ecceeEEEEEEecCCccC
Q psy6198 87 VKGCLVVEVIRAKNLQPK 104 (111)
Q Consensus 87 ~kG~LEVEVIrAR~L~~k 104 (111)
..+.|.|.|++||+|...
T Consensus 13 ~~~~L~v~vi~a~~L~~~ 30 (136)
T cd08405 13 TANRITVNIIKARNLKAM 30 (136)
T ss_pred CCCeEEEEEEEeeCCCcc
Confidence 448999999999999753
No 21
>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s
Probab=79.49 E-value=3.1 Score=28.46 Aligned_cols=18 Identities=28% Similarity=0.386 Sum_probs=15.6
Q ss_pred ecceeEEEEEEecCCccC
Q psy6198 87 VKGCLVVEVIRAKNLQPK 104 (111)
Q Consensus 87 ~kG~LEVEVIrAR~L~~k 104 (111)
..+.|.|.||+||+|..+
T Consensus 13 ~~~~L~V~vi~a~~L~~~ 30 (136)
T cd08404 13 TTNRLTVVVLKARHLPKM 30 (136)
T ss_pred CCCeEEEEEEEeeCCCcc
Confidence 467999999999999765
No 22
>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin
Probab=78.28 E-value=3 Score=30.38 Aligned_cols=17 Identities=47% Similarity=0.339 Sum_probs=15.0
Q ss_pred ceeEEEEEEecCCccCC
Q psy6198 89 GCLVVEVIRAKNLQPKP 105 (111)
Q Consensus 89 G~LEVEVIrAR~L~~kp 105 (111)
|.|+|.|++||+|.++-
T Consensus 27 g~L~V~Vi~A~nL~~~d 43 (162)
T cd04020 27 GELHVWVKEAKNLPALK 43 (162)
T ss_pred ceEEEEEEeeeCCCCCC
Confidence 89999999999997653
No 23
>KOG1028|consensus
Probab=76.12 E-value=4.4 Score=34.32 Aligned_cols=30 Identities=43% Similarity=0.545 Sum_probs=25.8
Q ss_pred cceEEEEEee--cceeEEEEEEecCCccCCCC
Q psy6198 78 GEVQLSLNNV--KGCLVVEVIRAKNLQPKPDS 107 (111)
Q Consensus 78 GdIqLgl~~~--kG~LEVEVIrAR~L~~kpGs 107 (111)
|||-++++|- .|.|.|.||.||+|......
T Consensus 285 gel~~sL~Y~p~~g~ltv~v~kar~L~~~~~~ 316 (421)
T KOG1028|consen 285 GELLLSLCYLPTAGRLTVVVIKARNLKSMDVG 316 (421)
T ss_pred ceEEEEEEeecCCCeEEEEEEEecCCCcccCC
Confidence 8999999985 58999999999999866544
No 24
>cd08375 C2_Intersectin C2 domain present in Intersectin. A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro
Probab=74.04 E-value=3.9 Score=28.81 Aligned_cols=21 Identities=24% Similarity=0.426 Sum_probs=16.9
Q ss_pred EEeecceeEEEEEEecCCccC
Q psy6198 84 LNNVKGCLVVEVIRAKNLQPK 104 (111)
Q Consensus 84 l~~~kG~LEVEVIrAR~L~~k 104 (111)
....-|.|.|.||+|++|.+.
T Consensus 10 ~~~~~G~L~V~Vi~A~~L~~~ 30 (136)
T cd08375 10 RASGIGRLMVVIVEGRDLKPC 30 (136)
T ss_pred CCCCcEEEEEEEEEeeCCCCC
Confidence 345568899999999999764
No 25
>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy
Probab=56.13 E-value=9.3 Score=28.14 Aligned_cols=17 Identities=47% Similarity=0.354 Sum_probs=14.6
Q ss_pred cceeEEEEEEecCCccC
Q psy6198 88 KGCLVVEVIRAKNLQPK 104 (111)
Q Consensus 88 kG~LEVEVIrAR~L~~k 104 (111)
.+.|+|.||+||+|.++
T Consensus 27 ~~~L~V~vi~a~~L~~~ 43 (153)
T cd08676 27 IFVLKVTVIEAKGLLAK 43 (153)
T ss_pred eEEEEEEEEeccCCccc
Confidence 56899999999999764
No 26
>cd04032 C2_Perforin C2 domain of Perforin. Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few
Probab=53.48 E-value=15 Score=26.05 Aligned_cols=16 Identities=38% Similarity=0.391 Sum_probs=13.7
Q ss_pred cceeEEEEEEecCCcc
Q psy6198 88 KGCLVVEVIRAKNLQP 103 (111)
Q Consensus 88 kG~LEVEVIrAR~L~~ 103 (111)
-+.|+|.|++|++|..
T Consensus 27 ~~~L~V~V~~A~~L~~ 42 (127)
T cd04032 27 LATLTVTVLRATGLWG 42 (127)
T ss_pred cEEEEEEEEECCCCCc
Confidence 4789999999999953
No 27
>PF02120 Flg_hook: Flagellar hook-length control protein FliK; InterPro: IPR021136 This entry represents the C-terminal domain of the flagellar hook-length control protein FliK. This entry also includes YscP of the Yersinia type III secretion system, and equivalent proteins in other pathogenic bacterial type III secretion systems. During flagellar morphogenesis in Salmonella typhimurium and Escherichia coli, flagellar hook-length control protein (FliK) controls the length of the hook by directly measuring the hook length [, ]. It is considered unlikely that FliK functions as a molecular ruler for determining hook length, but that it is more likely to be employing a novel mechanism. The deduced amino acid sequences of FliK proteins from S. typhimurium and E. coli have molecular masses of 41,748 and 39,246 Da, respectively, and are fairly hydrophilic []. Sequence comparison reveals around 50% identity, with greatest conservation in the C-terminal region, with 71% identity in the last 154 amino acids - mutagenesis of this conserved region completely abolishes motility. The central and C-terminal regions are rich in proline and glutamine respectively; it is thought that they may constitute distinct domains [].; PDB: 2RRL_A.
Probab=42.98 E-value=55 Score=20.58 Aligned_cols=28 Identities=29% Similarity=0.389 Sum_probs=20.0
Q ss_pred ccCCCccceEEEEEeecceeEEEEEEec
Q psy6198 72 LGLPSKGEVQLSLNNVKGCLVVEVIRAK 99 (111)
Q Consensus 72 Lasp~lGdIqLgl~~~kG~LEVEVIrAR 99 (111)
|-.|-+|+|.+-+...++.+.|.+.-.+
T Consensus 19 L~p~~LG~v~v~l~~~~~~l~v~~~~~~ 46 (85)
T PF02120_consen 19 LDPPELGSVEVKLRLQGGNLSVQFTAEN 46 (85)
T ss_dssp -SSGGG--EEEEEEEETTEEEEEEE--S
T ss_pred EcccccCcEEEEEEEeCCEEEEEEEECC
Confidence 4556699999999999999999987654
No 28
>KOG1028|consensus
Probab=35.85 E-value=75 Score=27.07 Aligned_cols=31 Identities=35% Similarity=0.449 Sum_probs=26.1
Q ss_pred CCccceEEEEEe--ecceeEEEEEEecCCccCC
Q psy6198 75 PSKGEVQLSLNN--VKGCLVVEVIRAKNLQPKP 105 (111)
Q Consensus 75 p~lGdIqLgl~~--~kG~LEVEVIrAR~L~~kp 105 (111)
...|.|+..+.| ....|.|.||+|++|-++.
T Consensus 151 ~~~G~l~fsl~Yd~~~~~L~V~V~qa~~Lp~~d 183 (421)
T KOG1028|consen 151 KAVGNLQFSLQYDFELNLLTVRVIQAHDLPAKD 183 (421)
T ss_pred eeeeeEEEEEEecccCCEEEEEEEEecCCCccc
Confidence 348888888876 5789999999999998876
No 29
>COG1261 FlgA Flagellar basal body P-ring biosynthesis protein [Cell motility and secretion / Posttranslational modification, protein turnover, chaperones]
Probab=34.92 E-value=49 Score=26.50 Aligned_cols=42 Identities=29% Similarity=0.433 Sum_probs=34.6
Q ss_pred CCCCCcccCceeccCCC---ccceEEEEEeecceeEE-------------EEEEecCCc
Q psy6198 60 GLGPGQVVGRQVLGLPS---KGEVQLSLNNVKGCLVV-------------EVIRAKNLQ 102 (111)
Q Consensus 60 gLGPGQvVGRQ~Lasp~---lGdIqLgl~~~kG~LEV-------------EVIrAR~L~ 102 (111)
.|=|||++.+-.+..|. .|+ ++=+.+..|.+.| |+||+|++-
T Consensus 144 ~l~pg~~i~~~~lr~~~lV~rg~-~V~~v~~~ggi~i~~~g~aL~nga~Ge~IrVrn~~ 201 (220)
T COG1261 144 TLLPGQPILASMLRQAWLVKRGQ-IVTVVAEGGGISITAEGKALENGAVGEVIRVRNVS 201 (220)
T ss_pred ccCCCCEecHHHhccceeEecCC-EEEEEEeCCCEEEEEeeeEccCccccceEEEecCC
Confidence 47899999999888887 788 6777778888888 588888874
No 30
>TIGR00739 yajC preprotein translocase, YajC subunit. While this protein is part of the preprotein translocase in Escherichia coli, it is not essential for viability or protein secretion. The N-terminus region contains a predicted membrane-spanning region followed by a region consisting almost entirely of residues with charged (acidic, basic, or zwitterionic) side chains. This small protein is about 100 residues in length, and is restricted to bacteria; however, this protein is absent from some lineages, including spirochetes and Mycoplasmas.
Probab=33.35 E-value=75 Score=21.58 Aligned_cols=39 Identities=23% Similarity=0.288 Sum_probs=28.7
Q ss_pred CCchhhhhhCCCCCcccCceeccCCCccceEEEEEeecceeEEEE
Q psy6198 51 SGQLSEFIEGLGPGQVVGRQVLGLPSKGEVQLSLNNVKGCLVVEV 95 (111)
Q Consensus 51 ~gqlsdFldgLGPGQvVGRQ~Lasp~lGdIqLgl~~~kG~LEVEV 95 (111)
..+..+|++.|-||+-| ++.+.-.|.|. .+.+ ..++||+
T Consensus 28 ~k~~~~m~~~L~~Gd~V---vT~gGi~G~V~-~i~d--~~v~vei 66 (84)
T TIGR00739 28 RKAHKKLIESLKKGDKV---LTIGGIIGTVT-KIAE--NTIVIEL 66 (84)
T ss_pred HHHHHHHHHhCCCCCEE---EECCCeEEEEE-EEeC--CEEEEEE
Confidence 45678999999999966 67777788876 4433 4666665
No 31
>PF10033 ATG13: Autophagy-related protein 13; InterPro: IPR018731 Members of this family of phosphoproteins are involved in cytoplasm to vacuole transport (Cvt), and more specifically in Cvt vesicle formation. They are probably involved in the switching machinery regulating the conversion between the Cvt pathway and autophagy. Finally, ATG13 is also required for glycogen storage [, , ].
Probab=30.13 E-value=38 Score=26.38 Aligned_cols=43 Identities=28% Similarity=0.375 Sum_probs=27.9
Q ss_pred eEEeeeeeeecCCCCCCCCCCCCCCccccccceecCCCCchhhh
Q psy6198 14 QILLRSRVFINKSKGPNISPCGTPISFSWTPTLKGSDSGQLSEF 57 (111)
Q Consensus 14 ~~~~~~~~~~~~s~~~~~s~~g~~~g~~~~P~lrl~~~gqlsdF 57 (111)
||++.||+..+++..+..+..++...+.|| ++.+.+...+.+=
T Consensus 10 ~iIl~SR~~~~~~~~~~~~~~~~~~~nkWF-NL~~~e~~~~~~~ 52 (233)
T PF10033_consen 10 QIILQSRLNLSPSSSSSSSSSSSRKRNKWF-NLEIDESDELREE 52 (233)
T ss_pred HHheeeccccCCCcccccccCCCCCCCccE-eecCCCcHHHHHH
Confidence 788999996666554444444566788899 6666555444443
No 32
>COG3144 FliK Flagellar hook-length control protein [Cell motility and secretion]
Probab=25.85 E-value=76 Score=27.64 Aligned_cols=24 Identities=17% Similarity=0.285 Sum_probs=21.7
Q ss_pred CCccceEEEEEeecceeEEEEEEe
Q psy6198 75 PSKGEVQLSLNNVKGCLVVEVIRA 98 (111)
Q Consensus 75 p~lGdIqLgl~~~kG~LEVEVIrA 98 (111)
+-||.|+|.|...+|++-|+++.+
T Consensus 308 ~eLG~l~I~Lt~e~g~~q~~f~ss 331 (417)
T COG3144 308 EELGRLDISLTMENGQAQAKFVSS 331 (417)
T ss_pred HHhCceEEEEEeeCCEEEEEEeeC
Confidence 349999999999999999999875
No 33
>PRK14347 lipoate-protein ligase B; Provisional
Probab=25.56 E-value=25 Score=27.92 Aligned_cols=44 Identities=20% Similarity=0.287 Sum_probs=25.2
Q ss_pred eeeeecCCCCCCCCCCCCCCccccccceecCCCCchhhhhhCCCCCcccCce
Q psy6198 19 SRVFINKSKGPNISPCGTPISFSWTPTLKGSDSGQLSEFIEGLGPGQVVGRQ 70 (111)
Q Consensus 19 ~~~~~~~s~~~~~s~~g~~~g~~~~P~lrl~~~gqlsdFldgLGPGQvVGRQ 70 (111)
.-|.|=|...... +...+.-+|.++..-.|++.= =||||+|+==
T Consensus 42 ~pVyT~G~~~~~~----~ll~~~~i~v~~t~RGG~vTy----HGPGQlV~Yp 85 (209)
T PRK14347 42 SEVYTAGTNYKQE----ELLNYGDIPVIYTGRGGKFTF----HGPGQRVIYP 85 (209)
T ss_pred CCCeeCCCCCChh----hcccccCCcEEEecCCcceEE----eCCCcEEEEE
Confidence 4577766433211 111122357777766677653 4999999854
No 34
>PRK14341 lipoate-protein ligase B; Provisional
Probab=25.18 E-value=26 Score=27.79 Aligned_cols=24 Identities=33% Similarity=0.477 Sum_probs=15.8
Q ss_pred ccceecCCCCchhhhhhCCCCCcccCce
Q psy6198 43 TPTLKGSDSGQLSEFIEGLGPGQVVGRQ 70 (111)
Q Consensus 43 ~P~lrl~~~gqlsdFldgLGPGQvVGRQ 70 (111)
.|.++..-.|++.= =||||+|+==
T Consensus 64 i~v~~t~RGG~iTy----HGPGQlV~Yp 87 (213)
T PRK14341 64 FPVYETGRGGQYTY----HGPGQRVAYV 87 (213)
T ss_pred CCEEEeCCCcceeE----ECCCeEEEEE
Confidence 46666655566543 4999999854
No 35
>TIGR00214 lipB lipoate-protein ligase B. Involved in lipoate biosynthesis as the main determinant of the lipoyl-protein ligase activity required for lipoylation of enzymes such as alpha-ketoacid dehydrogenases. Involved in activation and re-activation (following denaturation) of lipoyl-protein ligases (calcium ion-dependant process).
Probab=24.59 E-value=27 Score=27.09 Aligned_cols=22 Identities=32% Similarity=0.465 Sum_probs=13.7
Q ss_pred ceecCCCCchhhhhhCCCCCcccCce
Q psy6198 45 TLKGSDSGQLSEFIEGLGPGQVVGRQ 70 (111)
Q Consensus 45 ~lrl~~~gqlsdFldgLGPGQvVGRQ 70 (111)
-++..-.|++.= =||||+|+==
T Consensus 46 v~~~~RGG~iTy----HGPGQLV~Yp 67 (184)
T TIGR00214 46 VVQSERGGQVTY----HGPGQQVMYV 67 (184)
T ss_pred EEEeCCCCeeEE----ECCCeEEEEE
Confidence 444444555542 4999999744
No 36
>PRK14348 lipoate-protein ligase B; Provisional
Probab=23.59 E-value=29 Score=27.71 Aligned_cols=24 Identities=25% Similarity=0.390 Sum_probs=15.5
Q ss_pred ccceecCCCCchhhhhhCCCCCcccCce
Q psy6198 43 TPTLKGSDSGQLSEFIEGLGPGQVVGRQ 70 (111)
Q Consensus 43 ~P~lrl~~~gqlsdFldgLGPGQvVGRQ 70 (111)
.|.++..-.|++.= =||||+|+==
T Consensus 73 ~~v~~t~RGG~iTy----HGPGQlV~Yp 96 (221)
T PRK14348 73 ATLYHIDRGGDITY----HGPGQLVCYP 96 (221)
T ss_pred CcEEEeCCCCceEE----ECCCeEEEEE
Confidence 35666655555542 4999999754
No 37
>KOG0696|consensus
Probab=23.01 E-value=80 Score=29.45 Aligned_cols=31 Identities=29% Similarity=0.396 Sum_probs=27.3
Q ss_pred CCCccceEEEEEeecceeEEEEEEecCCccC
Q psy6198 74 LPSKGEVQLSLNNVKGCLVVEVIRAKNLQPK 104 (111)
Q Consensus 74 sp~lGdIqLgl~~~kG~LEVEVIrAR~L~~k 104 (111)
|-..|.|+|-..-+...|.|.|-.||+|+|-
T Consensus 165 tE~RGrl~l~~~~~~~~l~v~i~ea~NLiPM 195 (683)
T KOG0696|consen 165 TERRGRLYLEAHIKRDVLTVTIKEAKNLIPM 195 (683)
T ss_pred hhhcceEEEEEEecCceEEEEehhhcccccc
Confidence 4456899999999999999999999999873
No 38
>PRK12618 flgA flagellar basal body P-ring biosynthesis protein FlgA; Reviewed
Probab=22.77 E-value=1.3e+02 Score=22.13 Aligned_cols=34 Identities=24% Similarity=0.342 Sum_probs=27.4
Q ss_pred CCCCCcccCceeccCCC---ccceEEEEEeecceeEEE
Q psy6198 60 GLGPGQVVGRQVLGLPS---KGEVQLSLNNVKGCLVVE 94 (111)
Q Consensus 60 gLGPGQvVGRQ~Lasp~---lGdIqLgl~~~kG~LEVE 94 (111)
.|.|||.+-.+.|..|+ .|| ++-+.++.|.++|.
T Consensus 64 ~l~aGq~i~~~~L~~p~lV~rG~-~V~i~~~~ggl~i~ 100 (141)
T PRK12618 64 TLYAGRPIRAADLGPPAIVDRNQ-LVPLAYRLGGLEIR 100 (141)
T ss_pred ecCCCCeeCHHHcCCccEEeCCC-EEEEEEecCCEEEE
Confidence 47889999999999887 676 46678888888884
No 39
>PRK14342 lipoate-protein ligase B; Provisional
Probab=21.84 E-value=33 Score=27.24 Aligned_cols=24 Identities=33% Similarity=0.573 Sum_probs=15.1
Q ss_pred ccceecCCCCchhhhhhCCCCCcccCce
Q psy6198 43 TPTLKGSDSGQLSEFIEGLGPGQVVGRQ 70 (111)
Q Consensus 43 ~P~lrl~~~gqlsdFldgLGPGQvVGRQ 70 (111)
.|.++..-.|++.= =||||+|+==
T Consensus 64 ~~v~~~~RGG~iTy----HGPGQLV~Yp 87 (213)
T PRK14342 64 IPVVQSDRGGQVTY----HGPGQLVMYV 87 (213)
T ss_pred CcEEEecCCCceEE----ECCCeEEEEE
Confidence 35556554555442 4999999754
No 40
>PRK14345 lipoate-protein ligase B; Provisional
Probab=21.82 E-value=33 Score=27.56 Aligned_cols=24 Identities=38% Similarity=0.684 Sum_probs=15.9
Q ss_pred ccceecCCCCchhhhhhCCCCCcccCce
Q psy6198 43 TPTLKGSDSGQLSEFIEGLGPGQVVGRQ 70 (111)
Q Consensus 43 ~P~lrl~~~gqlsdFldgLGPGQvVGRQ 70 (111)
.|.++..-.|++.= =||||+|+==
T Consensus 70 i~v~~tdRGG~iTy----HGPGQLV~Yp 93 (234)
T PRK14345 70 TPVVDVDRGGKITW----HGPGQLVGYP 93 (234)
T ss_pred CcEEEecCCCceeE----eCCCeEEEEE
Confidence 46666655666543 4999999744
No 41
>PF00970 FAD_binding_6: Oxidoreductase FAD-binding domain; InterPro: IPR008333 These sequences contain an oxidoreductase FAD-binding domain. To date, the 3D-structures of the flavoprotein domain of Zea mays (Maize) nitrate reductase [] and of pig NADH:cytochrome b5 reductase [] have been solved. The overall fold is similar to that of ferredoxin:NADP+ reductase []: the FAD-binding domain (N-terminal) has the topology of an anti-parallel beta-barrel, while the NAD(P)-binding domain (C-terminal) has the topology of a classical pyridine dinucleotide-binding fold (i.e. a central parallel beta-sheet flanked by 2 helices on each side).; PDB: 1JB9_A 3LVB_A 3LO8_A 1FRN_A 1FND_A 1BX1_A 1FNC_A 1FNB_A 1BX0_A 1FRQ_A ....
Probab=21.64 E-value=78 Score=20.06 Aligned_cols=23 Identities=30% Similarity=0.626 Sum_probs=19.2
Q ss_pred ceecCCCCchhhhhhCCCCCccc
Q psy6198 45 TLKGSDSGQLSEFIEGLGPGQVV 67 (111)
Q Consensus 45 ~lrl~~~gqlsdFldgLGPGQvV 67 (111)
.+|..++|.++.+|+.|-||+.|
T Consensus 66 ~ik~~~~G~~S~~L~~l~~Gd~v 88 (99)
T PF00970_consen 66 AIKRYPNGRVSRYLHQLKPGDEV 88 (99)
T ss_dssp EEEECTTSHHHHHHHTSCTTSEE
T ss_pred EEEeccCCHHHHHHHhCCCCCEE
Confidence 35556789999999999999875
No 42
>COG0279 GmhA Phosphoheptose isomerase [Carbohydrate transport and metabolism]
Probab=21.16 E-value=42 Score=26.71 Aligned_cols=48 Identities=27% Similarity=0.368 Sum_probs=41.4
Q ss_pred cccceecC-CCCchhhhhhCCCCCcccCceeccCCCccceEEEEEeecc
Q psy6198 42 WTPTLKGS-DSGQLSEFIEGLGPGQVVGRQVLGLPSKGEVQLSLNNVKG 89 (111)
Q Consensus 42 ~~P~lrl~-~~gqlsdFldgLGPGQvVGRQ~Lasp~lGdIqLgl~~~kG 89 (111)
-+|.+.|. +.+.++-.--.-|+-.|--||+-|..--|||-||+....+
T Consensus 73 ~lpaIaLt~dsS~lTai~NDy~yd~vFsRqveA~g~~GDvLigISTSGN 121 (176)
T COG0279 73 SLPAIALSTDSSVLTAIANDYGYDEVFSRQVEALGQPGDVLIGISTSGN 121 (176)
T ss_pred CCCeeEeecccHHHhhhhccccHHHHHHHHHHhcCCCCCEEEEEeCCCC
Confidence 48888886 6677888888899999999999999999999999987654
Done!