Query psy6198
Match_columns 111
No_of_seqs 48 out of 50
Neff 2.4
Searched_HMMs 29240
Date Fri Aug 16 20:12:04 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6198.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6198hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2q3x_A Regulating synaptic mem 99.1 4.9E-11 1.7E-15 83.3 4.7 46 60-105 1-46 (171)
2 1rh8_A Piccolo protein; beta-s 97.5 0.00017 5.7E-09 47.4 5.5 32 74-105 3-34 (142)
3 1rsy_A Synaptotagmin I; calciu 97.5 0.00012 4.2E-09 49.2 4.4 47 54-104 9-57 (152)
4 3rdl_A Protein kinase C alpha 97.4 0.00019 6.3E-09 46.6 4.6 31 74-104 1-31 (137)
5 1ugk_A Synaptotagmin IV, KIAA1 97.1 0.00072 2.5E-08 44.5 4.5 33 73-105 4-38 (138)
6 2d8k_A Synaptotagmin VII; exoc 97.0 0.00093 3.2E-08 44.1 4.4 31 74-104 9-41 (141)
7 2chd_A Rabphilin-3A, exophilin 96.9 0.00096 3.3E-08 43.9 4.1 31 74-104 12-44 (142)
8 2dmg_A KIAA1228 protein; beta- 96.9 0.0014 4.8E-08 43.1 4.7 31 75-105 8-40 (142)
9 1a25_A CALB, protein kinase C 96.8 0.0013 4.5E-08 43.9 4.3 31 74-104 16-46 (149)
10 1w15_A Synaptotagmin IV; metal 96.8 0.001 3.5E-08 44.4 3.7 30 75-104 14-45 (153)
11 1tjx_A Similar to synaptotagmi 96.8 0.0012 4.2E-08 44.5 3.9 29 76-104 10-40 (159)
12 1v27_A Regulating synaptic mem 96.7 0.0025 8.4E-08 41.4 4.6 30 76-105 6-37 (141)
13 2enp_A B/K protein; C2 type 1, 96.6 0.0027 9.3E-08 42.1 4.4 29 76-104 11-41 (147)
14 3f04_A Synaptotagmin-1; C2A, c 96.5 0.0027 9.1E-08 41.8 4.0 30 75-104 18-49 (143)
15 2z0u_A WW domain-containing pr 96.4 0.0028 9.4E-08 44.0 3.7 31 75-105 27-59 (155)
16 2cm5_A Rabphilin-3A; protein t 96.4 0.0038 1.3E-07 42.4 4.3 31 74-104 20-52 (166)
17 2bwq_A Regulating synaptic mem 96.4 0.0043 1.5E-07 39.9 4.3 30 76-105 3-34 (129)
18 3fdw_A Synaptotagmin-like prot 96.3 0.0064 2.2E-07 40.5 4.8 31 75-105 7-39 (148)
19 2r83_A Synaptotagmin-1; C2A-C2 96.2 0.0047 1.6E-07 44.7 4.1 30 75-104 3-34 (284)
20 2b3r_A Phosphatidylinositol-4- 95.9 0.011 3.7E-07 39.2 4.6 33 77-109 8-40 (134)
21 3fbk_A RGS3, RGP3, regulator o 95.9 0.0087 3E-07 40.2 4.1 30 76-105 12-43 (153)
22 1dqv_A Synaptotagmin III; beta 94.5 0.038 1.3E-06 40.9 4.2 31 75-105 4-36 (296)
23 1wfm_A Synaptotagmin XIII; C2 93.6 0.11 3.7E-06 34.4 4.6 26 75-100 10-37 (138)
24 1dqv_A Synaptotagmin III; beta 92.4 0.13 4.4E-06 38.0 3.9 29 76-104 137-167 (296)
25 3n5a_A Synaptotagmin-7; calciu 91.3 0.19 6.5E-06 32.1 3.4 18 87-104 14-31 (138)
26 2r83_A Synaptotagmin-1; C2A-C2 90.4 0.29 9.8E-06 35.2 3.9 29 76-104 135-165 (284)
27 3kwu_A MUNC13-1; calcium bindi 86.8 0.37 1.3E-05 31.6 2.3 23 83-105 11-33 (148)
28 2fk9_A Protein kinase C, ETA t 83.4 0.51 1.7E-05 33.4 1.9 21 84-104 24-44 (157)
29 3b7y_A E3 ubiquitin-protein li 80.6 0.87 3E-05 29.9 2.1 19 86-104 17-35 (153)
30 2nq3_A Itchy homolog E3 ubiqui 79.5 0.77 2.6E-05 32.2 1.6 17 86-102 33-49 (173)
31 3pfq_A PKC-B, PKC-beta, protei 75.8 3.3 0.00011 34.4 4.6 32 73-104 156-187 (674)
32 3jzy_A Intersectin 2; C2 domai 49.5 10 0.00034 29.5 2.6 19 87-105 385-403 (510)
33 3nsj_A Perforin-1; pore formin 42.9 14 0.00047 31.1 2.6 21 89-109 394-414 (540)
34 1djx_A PLC-D1, phosphoinositid 34.7 22 0.00075 30.1 2.6 19 87-105 495-513 (624)
35 1cjy_A CPLA2, protein (cytosol 26.3 31 0.0011 30.5 2.2 17 87-103 16-32 (749)
No 1
>2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus}
Probab=99.12 E-value=4.9e-11 Score=83.28 Aligned_cols=46 Identities=50% Similarity=0.847 Sum_probs=38.7
Q ss_pred CCCCCcccCceeccCCCccceEEEEEeecceeEEEEEEecCCccCC
Q psy6198 60 GLGPGQVVGRQVLGLPSKGEVQLSLNNVKGCLVVEVIRAKNLQPKP 105 (111)
Q Consensus 60 gLGPGQvVGRQ~Lasp~lGdIqLgl~~~kG~LEVEVIrAR~L~~kp 105 (111)
.+||||++|||+++.+..|+|++++.+..+.|+|.||+||+|.++-
T Consensus 1 ~~gp~q~~~~~~~~~~~~G~l~~~l~y~~~~L~V~v~~a~~L~~~d 46 (171)
T 2q3x_A 1 SPGPAQLVGRQTLATPAMGDIQIGMEDKKGQLEVEVIRARSLTQKP 46 (171)
T ss_dssp CCCTTEEEECC-----CCCEEEEEEEEETTEEEEEEEEEESCCCCC
T ss_pred CCCcccccccccCCCCCccEEEEEEEECCCEEEEEEEEeeCCCCCC
Confidence 4899999999999999999999999999999999999999998764
No 2
>1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2
Probab=97.53 E-value=0.00017 Score=47.44 Aligned_cols=32 Identities=38% Similarity=0.711 Sum_probs=28.9
Q ss_pred CCCccceEEEEEeecceeEEEEEEecCCccCC
Q psy6198 74 LPSKGEVQLSLNNVKGCLVVEVIRAKNLQPKP 105 (111)
Q Consensus 74 sp~lGdIqLgl~~~kG~LEVEVIrAR~L~~kp 105 (111)
.|..|+|++++.+..+.|.|.|++||+|.++.
T Consensus 3 ~~~~G~i~~~l~y~~~~L~V~v~~a~~L~~~d 34 (142)
T 1rh8_A 3 HPITGEIQLQINYDLGNLIIHILQARNLVPRD 34 (142)
T ss_dssp CCCCCEEEEEEEEETTEEEEEEEEEESCCCCS
T ss_pred CCcceEEEEEEEEcCCEEEEEEEEecCCCCCC
Confidence 45699999999999999999999999998763
No 3
>1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2
Probab=97.48 E-value=0.00012 Score=49.23 Aligned_cols=47 Identities=19% Similarity=0.203 Sum_probs=34.1
Q ss_pred hhhhhhCCCCCcccCceeccCCCccceEEEEEe--ecceeEEEEEEecCCccC
Q psy6198 54 LSEFIEGLGPGQVVGRQVLGLPSKGEVQLSLNN--VKGCLVVEVIRAKNLQPK 104 (111)
Q Consensus 54 lsdFldgLGPGQvVGRQ~Lasp~lGdIqLgl~~--~kG~LEVEVIrAR~L~~k 104 (111)
-+..+|.|.|++.+ ......|+|++++.+ ..+.|.|.||+||+|.++
T Consensus 9 ~~~~~~~~~~~~~~----~~~~~~G~l~~~l~y~~~~~~L~V~v~~a~~L~~~ 57 (152)
T 1rsy_A 9 GGGILDSMVEKEEP----KEEEKLGKLQYSLDYDFQNNQLLVGIIQAAELPAL 57 (152)
T ss_dssp CHHHHHHSC------------CCCCEEEEEEEEETTTTEEEEEEEEEESCCCC
T ss_pred ccchhhhhccccCC----CCCCCceEEEEEEEEeCCCCEEEEEEEEeECCCCc
Confidence 34688889998664 456679999999998 789999999999999765
No 4
>3rdl_A Protein kinase C alpha type; protein kinase PKC, transferase; 1.50A {Rattus norvegicus} PDB: 3gpe_A 3rdj_A 3twy_A 1dsy_A* 4dnl_A* 2uzp_A*
Probab=97.43 E-value=0.00019 Score=46.64 Aligned_cols=31 Identities=32% Similarity=0.341 Sum_probs=28.1
Q ss_pred CCCccceEEEEEeecceeEEEEEEecCCccC
Q psy6198 74 LPSKGEVQLSLNNVKGCLVVEVIRAKNLQPK 104 (111)
Q Consensus 74 sp~lGdIqLgl~~~kG~LEVEVIrAR~L~~k 104 (111)
|...|+|+|.+.+.++.|.|.|++||+|.++
T Consensus 1 t~~~G~l~~~l~~~~~~L~v~v~~a~~L~~~ 31 (137)
T 3rdl_A 1 TEKRGRIYLKAEVTDEKLHVTVRDAKNLIPM 31 (137)
T ss_dssp CCCCCEEEEEEEEETTEEEEEEEEEESCCCC
T ss_pred CCcceEEEEEEEEcCCEEEEEEEEeeCCCCC
Confidence 3458999999999999999999999999765
No 5
>1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2
Probab=97.06 E-value=0.00072 Score=44.47 Aligned_cols=33 Identities=24% Similarity=0.359 Sum_probs=28.8
Q ss_pred cCCCccceEEEEEe--ecceeEEEEEEecCCccCC
Q psy6198 73 GLPSKGEVQLSLNN--VKGCLVVEVIRAKNLQPKP 105 (111)
Q Consensus 73 asp~lGdIqLgl~~--~kG~LEVEVIrAR~L~~kp 105 (111)
.+...|+|+|++.+ ..+.|+|.||+||+|.++.
T Consensus 4 ~~~~~G~l~~~l~y~~~~~~L~v~v~~a~~L~~~d 38 (138)
T 1ugk_A 4 GSSGLGTLFFSLEYNFERKAFVVNIKEARGLPAMD 38 (138)
T ss_dssp CCCCCCEEEEEEEEEGGGTEEEEEEEEEESCCCCB
T ss_pred CCCccEEEEEEEEEECCCCEEEEEEEEeeCCCCCC
Confidence 45668999999999 7899999999999997654
No 6
>2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.97 E-value=0.00093 Score=44.09 Aligned_cols=31 Identities=26% Similarity=0.458 Sum_probs=27.4
Q ss_pred CCCccceEEEEEe--ecceeEEEEEEecCCccC
Q psy6198 74 LPSKGEVQLSLNN--VKGCLVVEVIRAKNLQPK 104 (111)
Q Consensus 74 sp~lGdIqLgl~~--~kG~LEVEVIrAR~L~~k 104 (111)
....|+|++.+.+ ..+.|+|.||+||+|.++
T Consensus 9 ~~~~G~l~~~l~y~~~~~~L~v~v~~a~~L~~~ 41 (141)
T 2d8k_A 9 RENLGRIQFSVGYNFQESTLTVKIMKAQELPAK 41 (141)
T ss_dssp CCCCCEEEEEEEECSSSCCEEEEEEEEESCCCC
T ss_pred CceeeEEEEEEEEeCCCCEEEEEEEEeECCCCC
Confidence 3458999999999 789999999999999765
No 7
>2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A
Probab=96.92 E-value=0.00096 Score=43.90 Aligned_cols=31 Identities=32% Similarity=0.438 Sum_probs=26.7
Q ss_pred CCCccceEEEEEe--ecceeEEEEEEecCCccC
Q psy6198 74 LPSKGEVQLSLNN--VKGCLVVEVIRAKNLQPK 104 (111)
Q Consensus 74 sp~lGdIqLgl~~--~kG~LEVEVIrAR~L~~k 104 (111)
+...|+|++++.+ ..+.|.|.|++||+|.++
T Consensus 12 ~~~~G~l~~~l~y~~~~~~L~V~v~~a~~L~~~ 44 (142)
T 2chd_A 12 ATTLGALEFSLLYDQDNSNLQCTIIRAKGLKPM 44 (142)
T ss_dssp --CCCEEEEEEEEEGGGTEEEEEEEEEESCCCC
T ss_pred CCccceEEEEEEEeCCCCEEEEEEEEecCCCCC
Confidence 4458999999999 889999999999999765
No 8
>2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.88 E-value=0.0014 Score=43.10 Aligned_cols=31 Identities=26% Similarity=0.405 Sum_probs=27.5
Q ss_pred CCccceEEEEEee--cceeEEEEEEecCCccCC
Q psy6198 75 PSKGEVQLSLNNV--KGCLVVEVIRAKNLQPKP 105 (111)
Q Consensus 75 p~lGdIqLgl~~~--kG~LEVEVIrAR~L~~kp 105 (111)
...|+|+|.+.+. .+.|.|.|++||+|.++.
T Consensus 8 ~~~G~l~~~l~y~~~~~~L~v~v~~a~~L~~~d 40 (142)
T 2dmg_A 8 SPLGQIQLTIRHSSQRNKLIVVVHACRNLIAFS 40 (142)
T ss_dssp CSSCEEEEEEEEETTTTEEEEEEEEEECCCCSS
T ss_pred CCcceEEEEEEEeCCCCEEEEEEEEeECCCCCC
Confidence 4589999999998 899999999999997653
No 9
>1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2
Probab=96.83 E-value=0.0013 Score=43.88 Aligned_cols=31 Identities=29% Similarity=0.429 Sum_probs=27.6
Q ss_pred CCCccceEEEEEeecceeEEEEEEecCCccC
Q psy6198 74 LPSKGEVQLSLNNVKGCLVVEVIRAKNLQPK 104 (111)
Q Consensus 74 sp~lGdIqLgl~~~kG~LEVEVIrAR~L~~k 104 (111)
+...|+|++.+.+.++.|.|.||+||+|.++
T Consensus 16 ~~~~G~l~~~l~~~~~~L~v~v~~a~~L~~~ 46 (149)
T 1a25_A 16 MERRGRIYIQAHIDREVLIVVVRDAKNLVPM 46 (149)
T ss_dssp -CTTCEEEEEEEESSSEEEEEEEEEESCCCC
T ss_pred CCcceEEEEEEEecCCEEEEEEEEeeCCCCC
Confidence 4458999999999999999999999999765
No 10
>1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A
Probab=96.83 E-value=0.001 Score=44.44 Aligned_cols=30 Identities=30% Similarity=0.475 Sum_probs=24.7
Q ss_pred CCccceEEEEEe--ecceeEEEEEEecCCccC
Q psy6198 75 PSKGEVQLSLNN--VKGCLVVEVIRAKNLQPK 104 (111)
Q Consensus 75 p~lGdIqLgl~~--~kG~LEVEVIrAR~L~~k 104 (111)
...|+|+|.+.+ ..+.|.|.|++||+|.++
T Consensus 14 ~~~G~l~~~l~y~~~~~~L~v~v~~a~~L~~~ 45 (153)
T 1w15_A 14 SGRGELLVSLCYQSTTNTLTVVVLKARHLPKS 45 (153)
T ss_dssp --CCEEEEEEEEETTTTEEEEEEEEEESCC--
T ss_pred ccccEEEEEEEEcCCCCEEEEEEEEeECCCCc
Confidence 358999999999 789999999999999765
No 11
>1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A*
Probab=96.79 E-value=0.0012 Score=44.47 Aligned_cols=29 Identities=34% Similarity=0.497 Sum_probs=26.5
Q ss_pred CccceEEEEEe--ecceeEEEEEEecCCccC
Q psy6198 76 SKGEVQLSLNN--VKGCLVVEVIRAKNLQPK 104 (111)
Q Consensus 76 ~lGdIqLgl~~--~kG~LEVEVIrAR~L~~k 104 (111)
..|+|+|++.+ ..+.|.|.||+||+|.++
T Consensus 10 ~~G~l~~~l~y~~~~~~L~V~v~~a~~L~~~ 40 (159)
T 1tjx_A 10 KLGDICFSLRYVPTAGKLTVVILEAKNLKKM 40 (159)
T ss_dssp CCCEEEEEEEEETTTTEEEEEEEEEESCCCC
T ss_pred cCCeEEEEEEEcCCCCEEEEEEEEeeCCCCc
Confidence 58999999999 789999999999999765
No 12
>1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2
Probab=96.68 E-value=0.0025 Score=41.44 Aligned_cols=30 Identities=27% Similarity=0.371 Sum_probs=26.5
Q ss_pred CccceEEEEEee--cceeEEEEEEecCCccCC
Q psy6198 76 SKGEVQLSLNNV--KGCLVVEVIRAKNLQPKP 105 (111)
Q Consensus 76 ~lGdIqLgl~~~--kG~LEVEVIrAR~L~~kp 105 (111)
..|+|++.+.+. .+.|.|.||+||+|.++.
T Consensus 6 ~~G~i~~~l~y~~~~~~L~v~v~~a~~L~~~d 37 (141)
T 1v27_A 6 SGGQLSIKLWFDKVGHQLIVTILGAKDLPSRE 37 (141)
T ss_dssp CCCEEEEEEEEETTTTEEEEEEEEEESCCCCS
T ss_pred cccEEEEEEEEeCCCCEEEEEEEEccCCCCcC
Confidence 479999999997 789999999999997653
No 13
>2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.58 E-value=0.0027 Score=42.07 Aligned_cols=29 Identities=31% Similarity=0.442 Sum_probs=26.0
Q ss_pred CccceEEEEEee--cceeEEEEEEecCCccC
Q psy6198 76 SKGEVQLSLNNV--KGCLVVEVIRAKNLQPK 104 (111)
Q Consensus 76 ~lGdIqLgl~~~--kG~LEVEVIrAR~L~~k 104 (111)
.+|+|++++.+. .+.|.|.||+||+|.++
T Consensus 11 ~~G~l~~~l~y~~~~~~L~V~v~~a~~L~~~ 41 (147)
T 2enp_A 11 QLGMLHFSTQYDLLHNHLTVRVIEARDLPPP 41 (147)
T ss_dssp CCCEEEEEEEEETTTTEEEEEEEEEECCCCS
T ss_pred cceEEEEEEEEcCCCCEEEEEEEEEeCCCCc
Confidence 489999999985 78999999999999874
No 14
>3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.7.1.2 PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A*
Probab=96.53 E-value=0.0027 Score=41.80 Aligned_cols=30 Identities=30% Similarity=0.401 Sum_probs=26.7
Q ss_pred CCccceEEEEEe--ecceeEEEEEEecCCccC
Q psy6198 75 PSKGEVQLSLNN--VKGCLVVEVIRAKNLQPK 104 (111)
Q Consensus 75 p~lGdIqLgl~~--~kG~LEVEVIrAR~L~~k 104 (111)
..+|+|++++.+ ..+.|.|.|++||+|..+
T Consensus 18 ~~~G~l~~~l~y~~~~~~L~v~v~~a~~L~~~ 49 (143)
T 3f04_A 18 EKLGKLQYSLDYDFQNNQLLVGIIQAAELPAL 49 (143)
T ss_dssp CCCCEEEEEEEEETTTTEEEEEEEEEECCCCB
T ss_pred cCeEEEEEEEEEeCCCCEEEEEEEEecCCCCC
Confidence 348999999988 889999999999999765
No 15
>2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens}
Probab=96.40 E-value=0.0028 Score=44.01 Aligned_cols=31 Identities=16% Similarity=0.217 Sum_probs=26.9
Q ss_pred CCccceEEEEEe--ecceeEEEEEEecCCccCC
Q psy6198 75 PSKGEVQLSLNN--VKGCLVVEVIRAKNLQPKP 105 (111)
Q Consensus 75 p~lGdIqLgl~~--~kG~LEVEVIrAR~L~~kp 105 (111)
...|+|++++.+ ..+.|.|.||+||+|.++.
T Consensus 27 ~~~G~l~~sl~y~~~~~~L~V~Vi~a~~L~~~d 59 (155)
T 2z0u_A 27 VGATRIQIALKYDEKNKQFAILIIQLSNLSALL 59 (155)
T ss_dssp -CCEEEEEEEEEETTTTEEEEEEEEEECGGGTC
T ss_pred CCcEEEEEEEEEcCCCCEEEEEEEEccCcCCcc
Confidence 447999999998 6899999999999998764
No 16
>2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A
Probab=96.39 E-value=0.0038 Score=42.44 Aligned_cols=31 Identities=29% Similarity=0.514 Sum_probs=26.9
Q ss_pred CCCccceEEEEEe--ecceeEEEEEEecCCccC
Q psy6198 74 LPSKGEVQLSLNN--VKGCLVVEVIRAKNLQPK 104 (111)
Q Consensus 74 sp~lGdIqLgl~~--~kG~LEVEVIrAR~L~~k 104 (111)
+...|+|+|++.+ ..+.|.|.|++||+|.++
T Consensus 20 ~~~~G~l~~~l~y~~~~~~L~V~v~~a~~L~~~ 52 (166)
T 2cm5_A 20 IEERGKILVSLMYSTQQGGLIVGIIRCVHLAAM 52 (166)
T ss_dssp CCCCCEEEEEEEEETTTTEEEEEEEEEESCCCC
T ss_pred cCccceEEEEEEEECCCCEEEEEEEEeECCCCc
Confidence 3457999999999 689999999999999765
No 17
>2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2
Probab=96.39 E-value=0.0043 Score=39.86 Aligned_cols=30 Identities=23% Similarity=0.337 Sum_probs=25.8
Q ss_pred CccceEEEEEee--cceeEEEEEEecCCccCC
Q psy6198 76 SKGEVQLSLNNV--KGCLVVEVIRAKNLQPKP 105 (111)
Q Consensus 76 ~lGdIqLgl~~~--kG~LEVEVIrAR~L~~kp 105 (111)
..|+|++++.+. .+.|.|.|++||+|.++.
T Consensus 3 ~~G~l~~~l~y~~~~~~L~v~v~~a~~L~~~d 34 (129)
T 2bwq_A 3 LSGQLSIKLWFDKVGHQLIVTILGAKDLPSRE 34 (129)
T ss_dssp CCCEEEEEEEEETTTTEEEEEEEEEESCCCCT
T ss_pred eeEEEEEEEEEccCCCEEEEEEEEeeCCCCCC
Confidence 369999999987 578999999999997653
No 18
>3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens}
Probab=96.27 E-value=0.0064 Score=40.45 Aligned_cols=31 Identities=26% Similarity=0.264 Sum_probs=26.8
Q ss_pred CCccceEEEEEee--cceeEEEEEEecCCccCC
Q psy6198 75 PSKGEVQLSLNNV--KGCLVVEVIRAKNLQPKP 105 (111)
Q Consensus 75 p~lGdIqLgl~~~--kG~LEVEVIrAR~L~~kp 105 (111)
...|+|++++.+. .+.|.|.|++||+|.++.
T Consensus 7 ~~~G~l~~sl~y~~~~~~L~V~v~~a~~L~~~d 39 (148)
T 3fdw_A 7 FVTGRIAFSLKYEQQTQSLVVHVKECHQLAYAD 39 (148)
T ss_dssp CCCCEEEEEEEEETTTTEEEEEEEEEESCCCSB
T ss_pred ccceEEEEEEEEeCCCCEEEEEEEEecCCCCcc
Confidence 3479999999987 589999999999998654
No 19
>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2
Probab=96.20 E-value=0.0047 Score=44.66 Aligned_cols=30 Identities=30% Similarity=0.401 Sum_probs=27.1
Q ss_pred CCccceEEEEEe--ecceeEEEEEEecCCccC
Q psy6198 75 PSKGEVQLSLNN--VKGCLVVEVIRAKNLQPK 104 (111)
Q Consensus 75 p~lGdIqLgl~~--~kG~LEVEVIrAR~L~~k 104 (111)
..+|+|++++.+ ..+.|.|.|++||+|.++
T Consensus 3 ~~~G~l~~~l~y~~~~~~L~v~v~~a~~L~~~ 34 (284)
T 2r83_A 3 EKLGKLQYSLDYDFQNNQLLVGIIQAAELPAL 34 (284)
T ss_dssp CCCCEEEEEEEEETTTTEEEEEEEEEECCCCC
T ss_pred cceeEEEEEEEEECCCCEEEEEEEEeeCCCCC
Confidence 458999999999 789999999999999865
No 20
>2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus}
Probab=95.93 E-value=0.011 Score=39.22 Aligned_cols=33 Identities=27% Similarity=0.458 Sum_probs=27.2
Q ss_pred ccceEEEEEeecceeEEEEEEecCCccCCCCCC
Q psy6198 77 KGEVQLSLNNVKGCLVVEVIRAKNLQPKPDSKT 109 (111)
Q Consensus 77 lGdIqLgl~~~kG~LEVEVIrAR~L~~kpGsK~ 109 (111)
-+-+++...+..+.|.|.|++||+|.+..+.++
T Consensus 8 ~~~~~~~~~~~~~~L~V~V~~a~~L~~~~~g~~ 40 (134)
T 2b3r_A 8 SGAVKLSVSYRNGTLFIMVMHIKDLVTEDGADP 40 (134)
T ss_dssp CCEEEEEEEEETTEEEEEEEEEECCCCTTSCCC
T ss_pred cEEEEEEEeecCCEEEEEEEEeeCCCCCCCCCC
Confidence 356889999999999999999999986544443
No 21
>3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} SCOP: b.7.1.0
Probab=95.91 E-value=0.0087 Score=40.25 Aligned_cols=30 Identities=30% Similarity=0.396 Sum_probs=23.8
Q ss_pred CccceEEEEEe--ecceeEEEEEEecCCccCC
Q psy6198 76 SKGEVQLSLNN--VKGCLVVEVIRAKNLQPKP 105 (111)
Q Consensus 76 ~lGdIqLgl~~--~kG~LEVEVIrAR~L~~kp 105 (111)
.-|+|+|++.+ ..+.|.|.|++||+|.++.
T Consensus 12 ~~G~~~lsL~y~~~~~~L~V~v~~a~~L~~~d 43 (153)
T 3fbk_A 12 VQGAGQLRLSIDAQDRVLLLHIIEGKGLISKQ 43 (153)
T ss_dssp -CCCCEEEEEEEESSSEEEEEEEEEESCCCCS
T ss_pred CCCEEEEEEEEECCCCEEEEEEEEeeCCCCCC
Confidence 36777776655 7899999999999998764
No 22
>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A
Probab=94.53 E-value=0.038 Score=40.86 Aligned_cols=31 Identities=26% Similarity=0.393 Sum_probs=27.1
Q ss_pred CCccceEEEEEe--ecceeEEEEEEecCCccCC
Q psy6198 75 PSKGEVQLSLNN--VKGCLVVEVIRAKNLQPKP 105 (111)
Q Consensus 75 p~lGdIqLgl~~--~kG~LEVEVIrAR~L~~kp 105 (111)
...|+|++.+.+ ..+.|.|.||+||+|.++.
T Consensus 4 ~~~G~l~~~l~y~~~~~~L~v~v~~a~~L~~~d 36 (296)
T 1dqv_A 4 APCGRISFALRYLYGSDQLVVRILQALDLPAKD 36 (296)
T ss_dssp CSSCEEEEEEECCSSSCEEEEEEEEEECCCCCS
T ss_pred CeeeEEEEEEEEeCCCCEEEEEEEEeECCCCcC
Confidence 358999999998 5889999999999998653
No 23
>1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2
Probab=93.61 E-value=0.11 Score=34.38 Aligned_cols=26 Identities=19% Similarity=0.181 Sum_probs=22.9
Q ss_pred CCccceEEEEEee--cceeEEEEEEecC
Q psy6198 75 PSKGEVQLSLNNV--KGCLVVEVIRAKN 100 (111)
Q Consensus 75 p~lGdIqLgl~~~--kG~LEVEVIrAR~ 100 (111)
...|+|++++.+. ++.|.|.||+||+
T Consensus 10 ~~~G~l~~sl~y~~~~~~L~V~v~~a~~ 37 (138)
T 1wfm_A 10 NQAPKLHYCLDYDCQKAELFVTRLEAVT 37 (138)
T ss_dssp SSCCEEEEEEEEETTTTEEEEEEEEEEC
T ss_pred CcceEEEEEEEEeCCCCEEEEEEEEEEc
Confidence 3589999999984 7899999999995
No 24
>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A
Probab=92.36 E-value=0.13 Score=37.98 Aligned_cols=29 Identities=38% Similarity=0.580 Sum_probs=25.2
Q ss_pred CccceEEEEEee--cceeEEEEEEecCCccC
Q psy6198 76 SKGEVQLSLNNV--KGCLVVEVIRAKNLQPK 104 (111)
Q Consensus 76 ~lGdIqLgl~~~--kG~LEVEVIrAR~L~~k 104 (111)
..|+|++.+.+. .+.|.|.|++||+|.++
T Consensus 137 ~~G~i~vsl~y~~~~~~l~v~v~~a~~L~~~ 167 (296)
T 1dqv_A 137 DLGELNFSLCYLPTAGLLTVTIIKASNLKAM 167 (296)
T ss_dssp CCCEEEEEEEEETTTTEEEEEEEEEESCCCC
T ss_pred ccceEEEEEEeccccceeEEEEEEeecCCcc
Confidence 479999999884 68999999999999765
No 25
>3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus}
Probab=91.30 E-value=0.19 Score=32.13 Aligned_cols=18 Identities=28% Similarity=0.600 Sum_probs=16.5
Q ss_pred ecceeEEEEEEecCCccC
Q psy6198 87 VKGCLVVEVIRAKNLQPK 104 (111)
Q Consensus 87 ~kG~LEVEVIrAR~L~~k 104 (111)
..+.|+|.|++||+|..+
T Consensus 14 ~~~~L~v~v~~a~~L~~~ 31 (138)
T 3n5a_A 14 SANSIIVNIIKARNLKAM 31 (138)
T ss_dssp TTTEEEEEEEEEESCCCC
T ss_pred CCCeEEEEEEEeeCCCCc
Confidence 789999999999999765
No 26
>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2
Probab=90.35 E-value=0.29 Score=35.23 Aligned_cols=29 Identities=38% Similarity=0.536 Sum_probs=25.3
Q ss_pred CccceEEEEEee--cceeEEEEEEecCCccC
Q psy6198 76 SKGEVQLSLNNV--KGCLVVEVIRAKNLQPK 104 (111)
Q Consensus 76 ~lGdIqLgl~~~--kG~LEVEVIrAR~L~~k 104 (111)
..|+|++.+.+. .+.|.|.|++||+|.++
T Consensus 135 ~~G~i~l~l~~~p~~~~l~v~v~~a~~L~~~ 165 (284)
T 2r83_A 135 KLGDICFSLRYVPTAGKLTVVILEAKNLKKM 165 (284)
T ss_dssp CCCEEEEEEEEETTTTEEEEEEEEEESCCCC
T ss_pred ccccEEEEEEecCcCCceEEEEEEeECCCCc
Confidence 479999999884 68999999999999765
No 27
>3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} SCOP: b.7.1.0 PDB: 3kwt_A*
Probab=86.76 E-value=0.37 Score=31.56 Aligned_cols=23 Identities=22% Similarity=0.276 Sum_probs=16.7
Q ss_pred EEEeecceeEEEEEEecCCccCC
Q psy6198 83 SLNNVKGCLVVEVIRAKNLQPKP 105 (111)
Q Consensus 83 gl~~~kG~LEVEVIrAR~L~~kp 105 (111)
|+....|.|.|.|++||+|.++.
T Consensus 11 ~~~~~~~~L~V~v~~a~~L~~~d 33 (148)
T 3kwu_A 11 GTSKWSAKISITVVCAQGLQAKD 33 (148)
T ss_dssp ----CCEEEEEEEEEEESCCCCS
T ss_pred cccccccEEEEEEEeeeCCCCCC
Confidence 45556799999999999998753
No 28
>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens}
Probab=83.43 E-value=0.51 Score=33.36 Aligned_cols=21 Identities=33% Similarity=0.392 Sum_probs=17.9
Q ss_pred EEeecceeEEEEEEecCCccC
Q psy6198 84 LNNVKGCLVVEVIRAKNLQPK 104 (111)
Q Consensus 84 l~~~kG~LEVEVIrAR~L~~k 104 (111)
+....|.|.|.||+||+|.++
T Consensus 24 ~~~~~g~L~V~VieA~~L~~~ 44 (157)
T 2fk9_A 24 TMKFNGYLRVRIGEAVGLQPT 44 (157)
T ss_dssp CCCEEEEEEEEEEEEECCCCC
T ss_pred hccCccEEEEEEEEEECCCCc
Confidence 456779999999999999765
No 29
>3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A
Probab=80.59 E-value=0.87 Score=29.90 Aligned_cols=19 Identities=26% Similarity=0.218 Sum_probs=14.8
Q ss_pred eecceeEEEEEEecCCccC
Q psy6198 86 NVKGCLVVEVIRAKNLQPK 104 (111)
Q Consensus 86 ~~kG~LEVEVIrAR~L~~k 104 (111)
...+.|.|.|++||+|.++
T Consensus 17 ~~~~~L~V~v~~a~~L~~~ 35 (153)
T 3b7y_A 17 ENSRIVRVRVIAGIGLAKK 35 (153)
T ss_dssp TTCEEEEEEEEEEESCC--
T ss_pred CCccEEEEEEEEeeCCCCC
Confidence 3567899999999999765
No 30
>2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1
Probab=79.46 E-value=0.77 Score=32.18 Aligned_cols=17 Identities=35% Similarity=0.358 Sum_probs=14.9
Q ss_pred eecceeEEEEEEecCCc
Q psy6198 86 NVKGCLVVEVIRAKNLQ 102 (111)
Q Consensus 86 ~~kG~LEVEVIrAR~L~ 102 (111)
...+.|+|.||+||+|.
T Consensus 33 ~~~~~L~V~V~~A~~L~ 49 (173)
T 2nq3_A 33 TMKSQLQITVISAKLKE 49 (173)
T ss_dssp SCCEEEEEEEEEEEECC
T ss_pred CCceEEEEEEEEeECCC
Confidence 35678999999999997
No 31
>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A
Probab=75.80 E-value=3.3 Score=34.36 Aligned_cols=32 Identities=28% Similarity=0.359 Sum_probs=27.9
Q ss_pred cCCCccceEEEEEeecceeEEEEEEecCCccC
Q psy6198 73 GLPSKGEVQLSLNNVKGCLVVEVIRAKNLQPK 104 (111)
Q Consensus 73 asp~lGdIqLgl~~~kG~LEVEVIrAR~L~~k 104 (111)
.+...|.|++.+....+.|.|.|++|++|.++
T Consensus 156 ~~~~~g~i~~~~~~~~~~L~V~v~~a~~L~~~ 187 (674)
T 3pfq_A 156 HTERRGRIYIQAHIDREVLIVVVRDAKNLVPM 187 (674)
T ss_dssp SSCCSCEEEEEEEECSSEEEEEEEEEESCCCC
T ss_pred cccccccccccceeccceeeeeeecccccCCC
Confidence 34457899999999999999999999999775
No 32
>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B
Probab=49.50 E-value=10 Score=29.48 Aligned_cols=19 Identities=37% Similarity=0.387 Sum_probs=15.4
Q ss_pred ecceeEEEEEEecCCccCC
Q psy6198 87 VKGCLVVEVIRAKNLQPKP 105 (111)
Q Consensus 87 ~kG~LEVEVIrAR~L~~kp 105 (111)
..+.|.|.|++||+|.++.
T Consensus 385 ~~~~l~v~v~~a~~L~~~d 403 (510)
T 3jzy_A 385 GIGRLMVHVIEATELKACK 403 (510)
T ss_dssp -CEEEEEEEEEEESCCCCS
T ss_pred CCceEEEEeceeecCCCCC
Confidence 4578999999999997663
No 33
>3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus}
Probab=42.87 E-value=14 Score=31.07 Aligned_cols=21 Identities=33% Similarity=0.306 Sum_probs=16.0
Q ss_pred ceeEEEEEEecCCccCCCCCC
Q psy6198 89 GCLVVEVIRAKNLQPKPDSKT 109 (111)
Q Consensus 89 G~LEVEVIrAR~L~~kpGsK~ 109 (111)
+.|.|.|++||+|.....+|+
T Consensus 394 ~~L~V~V~~A~~L~~D~~g~s 414 (540)
T 3nsj_A 394 AHLVVSNFRAEHLWGDYTTAT 414 (540)
T ss_dssp EEEEEEEEEEESCCCSSCSCC
T ss_pred cEEEEEEEEccCCCcccCCCc
Confidence 469999999999976444443
No 34
>1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A
Probab=34.68 E-value=22 Score=30.07 Aligned_cols=19 Identities=21% Similarity=0.184 Sum_probs=16.2
Q ss_pred ecceeEEEEEEecCCccCC
Q psy6198 87 VKGCLVVEVIRAKNLQPKP 105 (111)
Q Consensus 87 ~kG~LEVEVIrAR~L~~kp 105 (111)
..+.|.|+||+|++|.++.
T Consensus 495 ~~~~L~V~Vi~A~~L~~~d 513 (624)
T 1djx_A 495 RPERLRVRIISGQQLPKVN 513 (624)
T ss_dssp CCEEEEEEEEEEESCCCCS
T ss_pred cceEEEEEEEEcCCCCccc
Confidence 5678999999999997654
No 35
>1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A
Probab=26.30 E-value=31 Score=30.45 Aligned_cols=17 Identities=24% Similarity=0.270 Sum_probs=14.8
Q ss_pred ecceeEEEEEEecCCcc
Q psy6198 87 VKGCLVVEVIRAKNLQP 103 (111)
Q Consensus 87 ~kG~LEVEVIrAR~L~~ 103 (111)
..+.|+|.||+||+|.+
T Consensus 16 ~~g~L~V~Vi~A~nL~~ 32 (749)
T 1cjy_A 16 YSHKFTVVVLRATKVTK 32 (749)
T ss_dssp CCEEEEEEEEEEECCCS
T ss_pred CccEEEEEEEEEECCCC
Confidence 36899999999999965
Done!