RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6198
(111 letters)
>2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer,
neurotransmitter release, transport protein; HET: MSE;
1.73A {Rattus norvegicus}
Length = 171
Score = 65.2 bits (159), Expect = 1e-14
Identities = 26/51 (50%), Positives = 36/51 (70%)
Query: 61 LGPGQVVGRQVLGLPSKGEVQLSLNNVKGCLVVEVIRAKNLQPKPDSKTLP 111
GP Q+VGRQ L P+ G++Q+ + + KG L VEVIRA++L KP SK+ P
Sbjct: 2 PGPAQLVGRQTLATPAMGDIQIGMEDKKGQLEVEVIRARSLTQKPGSKSTP 52
>2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha
polypeptide; C2 domain, lipid binding, PI3-kinase,
transferase; 2.30A {Mus musculus}
Length = 134
Score = 38.8 bits (91), Expect = 5e-05
Identities = 10/37 (27%), Positives = 18/37 (48%)
Query: 75 PSKGEVQLSLNNVKGCLVVEVIRAKNLQPKPDSKTLP 111
G V+LS++ G L + V+ K+L + + P
Sbjct: 6 HGSGAVKLSVSYRNGTLFIMVMHIKDLVTEDGADPNP 42
>3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid
binding, alternative splicing, cell membrane,
cytoplasmic vesicle, membrane; 2.20A {Homo sapiens}
Length = 148
Score = 38.5 bits (90), Expect = 7e-05
Identities = 9/40 (22%), Positives = 13/40 (32%), Gaps = 2/40 (5%)
Query: 74 LPSKGEVQLSL--NNVKGCLVVEVIRAKNLQPKPDSKTLP 111
+ G + SL LVV V L ++K
Sbjct: 6 IFVTGRIAFSLKYEQQTQSLVVHVKECHQLAYADEAKKRS 45
>1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus
norvegicus} SCOP: b.7.1.2
Length = 142
Score = 38.2 bits (89), Expect = 8e-05
Identities = 12/35 (34%), Positives = 23/35 (65%)
Query: 75 PSKGEVQLSLNNVKGCLVVEVIRAKNLQPKPDSKT 109
P GE+QL +N G L++ +++A+NL P+ ++
Sbjct: 4 PITGEIQLQINYDLGNLIIHILQARNLVPRDNNGY 38
>3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein
transport; 1.44A {Mus musculus}
Length = 138
Score = 37.3 bits (87), Expect = 2e-04
Identities = 12/30 (40%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
Query: 76 SKGEVQLSL--NNVKGCLVVEVIRAKNLQP 103
S+GE+ LSL N ++V +I+A+NL+
Sbjct: 1 SRGELLLSLCYNPSANSIIVNIIKARNLKA 30
>2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain,
neurotransmitter release, transport protein; 1.41A
{Rattus norvegicus} SCOP: b.7.1.2
Length = 129
Score = 36.5 bits (85), Expect = 4e-04
Identities = 9/35 (25%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Query: 77 KGEVQLSL--NNVKGCLVVEVIRAKNLQPKPDSKT 109
G++ + L + V L+V ++ AK+L + D +
Sbjct: 4 SGQLSIKLWFDKVGHQLIVTILGAKDLPSREDGRP 38
>3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle,
glycoprotein, lipoprotein, membrane, metal- binding,
palmitate, phosphoprotein; 1.35A {Homo sapiens} PDB:
3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A*
Length = 143
Score = 36.2 bits (84), Expect = 4e-04
Identities = 16/69 (23%), Positives = 25/69 (36%), Gaps = 18/69 (26%)
Query: 43 TPTLKGSDSGQLSEFIEGLGPGQVVGRQVLGLPSKGEVQLSL--NNVKGCLVVEVIRAKN 100
+P + G G L +E LG ++Q SL + L+V +I+A
Sbjct: 2 SPGIGGGGGGILDSMVEKLG----------------KLQYSLDYDFQNNQLLVGIIQAAE 45
Query: 101 LQPKPDSKT 109
L T
Sbjct: 46 LPALDMGGT 54
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 37.0 bits (85), Expect = 5e-04
Identities = 28/110 (25%), Positives = 43/110 (39%), Gaps = 28/110 (25%)
Query: 3 SAAAM---GNWEPY--------QIL----LRS-RVFINKSKGPNISPCGTPISFSWTPTL 46
+A A+ +WE + +L +R + PN S + + S
Sbjct: 279 TAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAY------PNTSLPPSILEDSLENN- 331
Query: 47 KGSDSGQLSEFIEGLGPGQV---VGRQVLGLPSKGEVQLSLNNVKGCLVV 93
+G S LS I L QV V + LP+ +V++SL N LVV
Sbjct: 332 EGVPSPMLS--ISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVV 379
Score = 35.4 bits (81), Expect = 0.002
Identities = 24/93 (25%), Positives = 32/93 (34%), Gaps = 23/93 (24%)
Query: 17 LRSRVFINKSKGPNISPCGT--PISFSWTPTLKGSDSGQLSEFIEGLGPGQVVGRQVLGL 74
LR ++ S I C P+ W T + + ++ GPG G LG
Sbjct: 468 LRV---LSGSISERIVDCIIRLPVK--WETTTQFK----ATHILD-FGPGGASG---LG- 513
Query: 75 PSKGEVQLSLNNVKGCLVVEVIRAKNLQPKPDS 107
L+ N G V VI A L PD
Sbjct: 514 ------VLTHRNKDGT-GVRVIVAGTLDINPDD 539
>2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 142
Score = 35.8 bits (83), Expect = 6e-04
Identities = 10/46 (21%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
Query: 68 GRQVLGLPSKGEVQLSL--NNVKGCLVVEVIRAKNLQPKPDSKTLP 111
G G++QL++ ++ + L+V V +NL + + P
Sbjct: 1 GSSGSSGSPLGQIQLTIRHSSQRNKLIVVVHACRNLIAFSEDGSDP 46
>1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding
protein, calcium-binding protein; HET: PSE; 2.70A
{Rattus norvegicus} SCOP: b.7.1.2
Length = 149
Score = 35.8 bits (83), Expect = 7e-04
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 75 PSKGEVQLSLNNVKGCLVVEVIRAKNLQPK 104
+G + + + + L+V V AKNL P
Sbjct: 17 ERRGRIYIQAHIDREVLIVVVRDAKNLVPM 46
>1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A
{Rattus norvegicus} SCOP: b.7.1.2
Length = 152
Score = 35.9 bits (83), Expect = 7e-04
Identities = 16/69 (23%), Positives = 26/69 (37%), Gaps = 10/69 (14%)
Query: 43 TPTLKGSDSGQLSEFIEGLGPGQVVGRQVLGLPSKGEVQLSL--NNVKGCLVVEVIRAKN 100
+P + G G L +E P + G++Q SL + L+V +I+A
Sbjct: 2 SPGISGGGGGILDSMVEKEEPKEEEKL--------GKLQYSLDYDFQNNQLLVGIIQAAE 53
Query: 101 LQPKPDSKT 109
L T
Sbjct: 54 LPALDMGGT 62
>3rdl_A Protein kinase C alpha type; protein kinase PKC, transferase; 1.50A
{Rattus norvegicus} PDB: 3gpe_A 3rdj_A 3twy_A 1dsy_A*
4dnl_A* 2uzp_A*
Length = 137
Score = 35.8 bits (83), Expect = 7e-04
Identities = 10/30 (33%), Positives = 12/30 (40%)
Query: 75 PSKGEVQLSLNNVKGCLVVEVIRAKNLQPK 104
+G + L L V V AKNL P
Sbjct: 2 EKRGRIYLKAEVTDEKLHVTVRDAKNLIPM 31
>1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting
molecule, riken structural genomics/proteomics
initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2
Length = 141
Score = 35.4 bits (82), Expect = 8e-04
Identities = 10/36 (27%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 76 SKGEVQLSL--NNVKGCLVVEVIRAKNLQPKPDSKT 109
S G++ + L + V L+V ++ AK+L + D +
Sbjct: 6 SGGQLSIKLWFDKVGHQLIVTILGAKDLPSREDGRP 41
>2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding,
synaptic EXOC metal-binding, protein transport, synapse,
transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A
Length = 142
Score = 35.4 bits (82), Expect = 9e-04
Identities = 10/37 (27%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
Query: 75 PSKGEVQLSL--NNVKGCLVVEVIRAKNLQPKPDSKT 109
+ G ++ SL + L +IRAK L+P +
Sbjct: 13 TTLGALEFSLLYDQDNSNLQCTIIRAKGLKPMDSNGL 49
>2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding,
metal-binding, synaptic exocytosis, C2A-C2B linker
fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus}
SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A
Length = 166
Score = 35.1 bits (81), Expect = 0.001
Identities = 9/34 (26%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Query: 78 GEVQLSL--NNVKGCLVVEVIRAKNLQPKPDSKT 109
G++ +SL + +G L+V +IR +L +
Sbjct: 24 GKILVSLMYSTQQGGLIVGIIRCVHLAAMDANGY 57
>1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding,
endocytosis-EX complex; HET: GOL; 1.04A {Rattus
norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A
1k5w_A 2lha_A*
Length = 159
Score = 34.7 bits (80), Expect = 0.002
Identities = 10/34 (29%), Positives = 15/34 (44%), Gaps = 2/34 (5%)
Query: 78 GEVQLSL--NNVKGCLVVEVIRAKNLQPKPDSKT 109
G++ SL G L V ++ AKNL+
Sbjct: 12 GDICFSLRYVPTAGKLTVVILEAKNLKKMDVGGL 45
>2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing,
coiled coil, cytoplasm, phosphorylation, polymorphism,
lipid binding protein; 2.20A {Homo sapiens}
Length = 155
Score = 34.7 bits (80), Expect = 0.002
Identities = 5/34 (14%), Positives = 13/34 (38%), Gaps = 2/34 (5%)
Query: 78 GEVQLSL--NNVKGCLVVEVIRAKNLQPKPDSKT 109
+Q++L + + +I+ NL +
Sbjct: 30 TRIQIALKYDEKNKQFAILIIQLSNLSALLQQQD 63
>2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 141
Score = 34.2 bits (79), Expect = 0.003
Identities = 11/34 (32%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Query: 78 GEVQLSL--NNVKGCLVVEVIRAKNLQPKPDSKT 109
G +Q S+ N + L V++++A+ L K S T
Sbjct: 13 GRIQFSVGYNFQESTLTVKIMKAQELPAKDFSGT 46
>1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis
neurotransmitter release, transmembrane; 1.93A {Rattus
norvegicus} SCOP: b.7.1.2 PDB: 1w16_A
Length = 153
Score = 34.3 bits (79), Expect = 0.003
Identities = 10/36 (27%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Query: 76 SKGEVQLSL--NNVKGCLVVEVIRAKNLQPKPDSKT 109
+GE+ +SL + L V V++A++L S
Sbjct: 15 GRGELLVSLCYQSTTNTLTVVVLKARHLPKSDVSGL 50
>1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics,
riken structural genomics/proteomics initiative, RSGI,
protein binding; NMR {Homo sapiens} SCOP: b.7.1.2
Length = 138
Score = 33.1 bits (76), Expect = 0.006
Identities = 8/29 (27%), Positives = 12/29 (41%), Gaps = 2/29 (6%)
Query: 78 GEVQLSL--NNVKGCLVVEVIRAKNLQPK 104
G + SL N + VV + A+ L
Sbjct: 9 GTLFFSLEYNFERKAFVVNIKEARGLPAM 37
>3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet
fold, structural genomics, PSI-2, protein structure
initiative; 2.00A {Homo sapiens}
Length = 153
Score = 33.1 bits (76), Expect = 0.006
Identities = 9/32 (28%), Positives = 14/32 (43%), Gaps = 2/32 (6%)
Query: 75 PSKGEVQLSL--NNVKGCLVVEVIRAKNLQPK 104
+G QL L + L++ +I K L K
Sbjct: 11 KVQGAGQLRLSIDAQDRVLLLHIIEGKGLISK 42
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 33.3 bits (75), Expect = 0.012
Identities = 12/56 (21%), Positives = 23/56 (41%), Gaps = 11/56 (19%)
Query: 53 QLSEFIEGLGPGQVVGRQVLGLPSKGEVQLSLNNVKGCLVVEVIRAKNLQPKPDSK 108
+L + + L P + V + G+ G K + ++V + +Q K D K
Sbjct: 139 KLRQALLELRPAKNVL--IDGVLGSG---------KTWVALDVCLSYKVQCKMDFK 183
>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction,
cytoplasmic vesicle, glycoprotein, lipoprotein,
membrane, metal-binding palmitate; 2.70A {Homo sapiens}
SCOP: b.7.1.2
Length = 284
Score = 32.9 bits (75), Expect = 0.013
Identities = 10/34 (29%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
Query: 78 GEVQLSL--NNVKGCLVVEVIRAKNLQPKPDSKT 109
G++Q SL + L+V +I+A L T
Sbjct: 6 GKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGT 39
Score = 29.0 bits (65), Expect = 0.25
Identities = 11/37 (29%), Positives = 16/37 (43%), Gaps = 2/37 (5%)
Query: 75 PSKGEVQLSLNNVK--GCLVVEVIRAKNLQPKPDSKT 109
G++ SL V G L V ++ AKNL+
Sbjct: 134 EKLGDICFSLRYVPTAGKLTVVILEAKNLKKMDVGGL 170
>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain,
endocytosis/exocytosis complex; 3.20A {Rattus rattus}
SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A
Length = 296
Score = 32.1 bits (73), Expect = 0.019
Identities = 8/34 (23%), Positives = 15/34 (44%), Gaps = 2/34 (5%)
Query: 78 GEVQLSL--NNVKGCLVVEVIRAKNLQPKPDSKT 109
G + +L LVV +++A +L K +
Sbjct: 7 GRISFALRYLYGSDQLVVRILQALDLPAKDSNGF 40
Score = 31.0 bits (70), Expect = 0.060
Identities = 11/37 (29%), Positives = 16/37 (43%), Gaps = 2/37 (5%)
Query: 75 PSKGEVQLSL--NNVKGCLVVEVIRAKNLQPKPDSKT 109
GE+ SL G L V +I+A NL+ +
Sbjct: 136 ADLGELNFSLCYLPTAGLLTVTIIKASNLKAMDLTGF 172
>1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter
release, riken structural genomics/proteomics
initiative, RSGI, structural genomics; NMR {Homo
sapiens} SCOP: b.7.1.2
Length = 138
Score = 31.6 bits (72), Expect = 0.027
Identities = 5/34 (14%), Positives = 9/34 (26%), Gaps = 2/34 (5%)
Query: 76 SKGEVQLSL--NNVKGCLVVEVIRAKNLQPKPDS 107
++ L + K L V + A
Sbjct: 11 QAPKLHYCLDYDCQKAELFVTRLEAVTSNHDGGC 44
>2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 147
Score = 30.5 bits (69), Expect = 0.053
Identities = 9/28 (32%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
Query: 78 GEVQLSL--NNVKGCLVVEVIRAKNLQP 103
G + S + + L V VI A++L P
Sbjct: 13 GMLHFSTQYDLLHNHLTVRVIEARDLPP 40
>3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein,
metal binding protein; HET: GOL; 1.37A {Rattus
norvegicus} PDB: 3kwt_A*
Length = 148
Score = 29.8 bits (67), Expect = 0.11
Identities = 7/31 (22%), Positives = 12/31 (38%)
Query: 74 LPSKGEVQLSLNNVKGCLVVEVIRAKNLQPK 104
K V + + + V+ A+ LQ K
Sbjct: 2 FAVKQSVLDGTSKWSAKISITVVCAQGLQAK 32
>3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation
pathway, structural genomics consortium, SGC, cytoplasm;
1.80A {Homo sapiens} PDB: 2nsq_A
Length = 153
Score = 28.2 bits (63), Expect = 0.41
Identities = 7/35 (20%), Positives = 11/35 (31%), Gaps = 3/35 (8%)
Query: 73 GLPSKGEVQLSLNNVK---GCLVVEVIRAKNLQPK 104
G+ + L + + V VI L K
Sbjct: 1 GMATCAVEVFGLLEDEENSRIVRVRVIAGIGLAKK 35
>3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain,
phosphoprotein, conjugation pathway, signaling
protein-ligase complex; 2.00A {Mus musculus}
Length = 176
Score = 27.5 bits (61), Expect = 0.63
Identities = 6/20 (30%), Positives = 9/20 (45%)
Query: 85 NNVKGCLVVEVIRAKNLQPK 104
N+ + V+VI L K
Sbjct: 4 NDDTRVVRVKVIAGIGLAKK 23
>2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.7.1.1
Length = 133
Score = 26.9 bits (60), Expect = 0.92
Identities = 6/16 (37%), Positives = 10/16 (62%)
Query: 89 GCLVVEVIRAKNLQPK 104
G L V+V++A +L
Sbjct: 13 GILQVKVLKAADLLAA 28
>2vzf_A NADH-dependent FMN reductase; oxidoreductase; 2.50A {Edta-degrading
bacterium BNC1} PDB: 2vzh_A* 2vzj_A*
Length = 197
Score = 27.2 bits (60), Expect = 0.98
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 43 TPTLKGSDSGQLSEFIEGLGPGQVVGRQVL 72
TP K S +G L F++ L + G+ L
Sbjct: 77 TPIYKASYTGLLKAFLDILPQFALAGKAAL 106
>2i7t_A Cleavage and polyadenylation specificity factor 73 kDa subunit;
metallo-B-lactamase, PRE-mRNA processing, artemis, V(D)J
recombination; 2.10A {Homo sapiens} SCOP: d.157.1.10
PDB: 2i7v_A
Length = 459
Score = 25.6 bits (57), Expect = 3.6
Identities = 13/31 (41%), Positives = 15/31 (48%), Gaps = 7/31 (22%)
Query: 38 ISFSWTPTLKG-SDSGQLSEFIEGLGPGQVV 67
ISFS +D Q SEFI L P V+
Sbjct: 391 ISFS------AHTDYQQTSEFIRALKPPHVI 415
>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY,
phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP:
b.7.1.1
Length = 136
Score = 25.6 bits (56), Expect = 3.7
Identities = 6/20 (30%), Positives = 11/20 (55%)
Query: 89 GCLVVEVIRAKNLQPKPDSK 108
G L +++ A +L+P S
Sbjct: 6 GLLKIKICEAVSLKPTAWSL 25
>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding,
nucleotide-binding, diacylglycerol binding,
serine/threonine-protein kinase, transferase; 1.75A
{Homo sapiens}
Length = 157
Score = 25.3 bits (55), Expect = 4.0
Identities = 8/20 (40%), Positives = 9/20 (45%)
Query: 89 GCLVVEVIRAKNLQPKPDSK 108
G L V + A LQP S
Sbjct: 29 GYLRVRIGEAVGLQPTRWSL 48
>3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane,
phosphoprotein, SH3-binding, signaling protein; 3.00A
{Rattus norvegicus}
Length = 483
Score = 25.3 bits (54), Expect = 5.2
Identities = 6/17 (35%), Positives = 9/17 (52%)
Query: 90 CLVVEVIRAKNLQPKPD 106
L + +I A+ L PK
Sbjct: 12 VLKLWIIEARELPPKKR 28
>1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding,
hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1
c.19.1.2 PDB: 1bci_A
Length = 749
Score = 25.3 bits (54), Expect = 6.4
Identities = 4/17 (23%), Positives = 6/17 (35%)
Query: 89 GCLVVEVIRAKNLQPKP 105
V V+RA +
Sbjct: 18 HKFTVVVLRATKVTKGA 34
>1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, plant protein; NMR {Arabidopsis thaliana}
SCOP: b.7.1.2
Length = 136
Score = 24.6 bits (54), Expect = 6.8
Identities = 6/16 (37%), Positives = 9/16 (56%)
Query: 89 GCLVVEVIRAKNLQPK 104
G L V ++ AK L+
Sbjct: 10 GTLEVVLVSAKGLEDA 25
>2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL
conjugation pathway, structural genomics consortium,
SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1
Length = 173
Score = 24.8 bits (54), Expect = 7.3
Identities = 7/19 (36%), Positives = 10/19 (52%)
Query: 86 NVKGCLVVEVIRAKNLQPK 104
+K L + VI AK + K
Sbjct: 33 TMKSQLQITVISAKLKENK 51
>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy,
cardiomyopathy, membrane fusion, dystrophin, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 140
Score = 24.3 bits (53), Expect = 8.6
Identities = 8/21 (38%), Positives = 9/21 (42%), Gaps = 1/21 (4%)
Query: 89 GCLVVEVIRAKNLQPKPDSKT 109
G L V V A N+ PK
Sbjct: 7 GMLRVIVESASNI-PKTKFGK 26
>3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane
associate, lipid binding PROT; 1.96A {Homo sapiens} PDB:
2jqz_A
Length = 132
Score = 24.3 bits (53), Expect = 9.8
Identities = 6/14 (42%), Positives = 9/14 (64%)
Query: 91 LVVEVIRAKNLQPK 104
+ + V+ AKNL K
Sbjct: 7 IRLTVLCAKNLAKK 20
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.314 0.135 0.406
Gapped
Lambda K H
0.267 0.0715 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,602,646
Number of extensions: 82624
Number of successful extensions: 114
Number of sequences better than 10.0: 1
Number of HSP's gapped: 113
Number of HSP's successfully gapped: 44
Length of query: 111
Length of database: 6,701,793
Length adjustment: 75
Effective length of query: 36
Effective length of database: 4,607,718
Effective search space: 165877848
Effective search space used: 165877848
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 51 (23.5 bits)