RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy6198
(111 letters)
>d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 142
Score = 41.0 bits (95), Expect = 3e-06
Identities = 12/35 (34%), Positives = 23/35 (65%)
Query: 75 PSKGEVQLSLNNVKGCLVVEVIRAKNLQPKPDSKT 109
P GE+QL +N G L++ +++A+NL P+ ++
Sbjct: 4 PITGEIQLQINYDLGNLIIHILQARNLVPRDNNGY 38
>d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 132
Score = 37.4 bits (86), Expect = 5e-05
Identities = 9/33 (27%), Positives = 16/33 (48%)
Query: 77 KGEVQLSLNNVKGCLVVEVIRAKNLQPKPDSKT 109
+G + + + + L+V V AKNL P +
Sbjct: 3 RGRIYIQAHIDREVLIVVVRDAKNLVPMDPNGL 35
>d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 137
Score = 36.7 bits (84), Expect = 1e-04
Identities = 9/35 (25%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Query: 77 KGEVQLSL--NNVKGCLVVEVIRAKNLQPKPDSKT 109
+G++ +SL + +G L+V +IR +L +
Sbjct: 1 RGKILVSLMYSTQQGGLIVGIIRCVHLAAMDANGY 35
>d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis
protein, rim2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 125
Score = 36.2 bits (83), Expect = 1e-04
Identities = 9/34 (26%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Query: 78 GEVQLSL--NNVKGCLVVEVIRAKNLQPKPDSKT 109
G++ + L + V L+V ++ AK+L + D +
Sbjct: 1 GQLSIKLWFDKVGHQLIVTILGAKDLPSREDGRP 34
>d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 138
Score = 36.2 bits (83), Expect = 2e-04
Identities = 10/35 (28%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Query: 77 KGEVQLSL--NNVKGCLVVEVIRAKNLQPKPDSKT 109
+GE+ +SL + L V V++A++L S
Sbjct: 1 RGELLVSLCYQSTTNTLTVVVLKARHLPKSDVSGL 35
>d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 143
Score = 33.2 bits (75), Expect = 0.003
Identities = 10/34 (29%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
Query: 78 GEVQLSL--NNVKGCLVVEVIRAKNLQPKPDSKT 109
G++Q SL + L+V +I+A L T
Sbjct: 21 GKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGT 54
>d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId:
9606]}
Length = 138
Score = 32.8 bits (74), Expect = 0.003
Identities = 9/41 (21%), Positives = 14/41 (34%), Gaps = 2/41 (4%)
Query: 73 GLPSKGEVQLSL--NNVKGCLVVEVIRAKNLQPKPDSKTLP 111
G G + SL N + VV + A+ L +
Sbjct: 4 GSSGLGTLFFSLEYNFERKAFVVNIKEARGLPAMDEQSMTS 44
>d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 145
Score = 32.5 bits (73), Expect = 0.004
Identities = 11/34 (32%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
Query: 78 GEVQLSL--NNVKGCLVVEVIRAKNLQPKPDSKT 109
GE+ SL G L V +I+A NL+ +
Sbjct: 7 GELNFSLCYLPTAGLLTVTIIKASNLKAMDLTGF 40
>d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 130
Score = 30.7 bits (68), Expect = 0.016
Identities = 8/34 (23%), Positives = 15/34 (44%), Gaps = 2/34 (5%)
Query: 78 GEVQLSL--NNVKGCLVVEVIRAKNLQPKPDSKT 109
G + +L LVV +++A +L K +
Sbjct: 5 GRISFALRYLYGSDQLVVRILQALDLPAKDSNGF 38
>d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 157
Score = 30.6 bits (68), Expect = 0.025
Identities = 10/34 (29%), Positives = 15/34 (44%), Gaps = 2/34 (5%)
Query: 78 GEVQLSL--NNVKGCLVVEVIRAKNLQPKPDSKT 109
G++ SL G L V ++ AKNL+
Sbjct: 12 GDICFSLRYVPTAGKLTVVILEAKNLKKMDVGGL 45
>d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens)
[TaxId: 9606]}
Length = 138
Score = 29.5 bits (65), Expect = 0.055
Identities = 5/29 (17%), Positives = 9/29 (31%), Gaps = 2/29 (6%)
Query: 78 GEVQLSL--NNVKGCLVVEVIRAKNLQPK 104
++ L + K L V + A
Sbjct: 13 PKLHYCLDYDCQKAELFVTRLEAVTSNHD 41
>d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane
domain-containing protein 2, MCTP2 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 126
Score = 27.1 bits (59), Expect = 0.34
Identities = 6/16 (37%), Positives = 10/16 (62%)
Query: 89 GCLVVEVIRAKNLQPK 104
G L V+V++A +L
Sbjct: 6 GILQVKVLKAADLLAA 21
>d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human
(Homo sapiens) [TaxId: 9606]}
Length = 133
Score = 27.0 bits (59), Expect = 0.39
Identities = 7/24 (29%), Positives = 11/24 (45%)
Query: 86 NVKGCLVVEVIRAKNLQPKPDSKT 109
+K L + VI AK + K +
Sbjct: 3 TMKSQLQITVISAKLKENKKNWFG 26
>d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat
(Rattus rattus) [TaxId: 10117]}
Length = 136
Score = 26.0 bits (56), Expect = 0.73
Identities = 6/21 (28%), Positives = 11/21 (52%)
Query: 89 GCLVVEVIRAKNLQPKPDSKT 109
G L +++ A +L+P S
Sbjct: 6 GLLKIKICEAVSLKPTAWSLR 26
>d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1
(PLC-D1), C-terminal domain {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 131
Score = 25.9 bits (56), Expect = 0.95
Identities = 5/19 (26%), Positives = 8/19 (42%)
Query: 91 LVVEVIRAKNLQPKPDSKT 109
L V +I + L +K
Sbjct: 6 LRVRIISGQQLPKVNKNKN 24
>d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 136
Score = 25.1 bits (54), Expect = 1.6
Identities = 6/17 (35%), Positives = 9/17 (52%)
Query: 88 KGCLVVEVIRAKNLQPK 104
G L V ++ AK L+
Sbjct: 9 HGTLEVVLVSAKGLEDA 25
>d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 126
Score = 24.7 bits (53), Expect = 2.5
Identities = 4/14 (28%), Positives = 6/14 (42%)
Query: 91 LVVEVIRAKNLQPK 104
V V+RA +
Sbjct: 5 FTVVVLRATKVTKG 18
>d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 128
Score = 23.5 bits (50), Expect = 5.7
Identities = 5/14 (35%), Positives = 7/14 (50%)
Query: 91 LVVEVIRAKNLQPK 104
L V V +AK +
Sbjct: 4 LCVGVKKAKFDGAQ 17
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.314 0.135 0.406
Gapped
Lambda K H
0.267 0.0506 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 389,975
Number of extensions: 15046
Number of successful extensions: 28
Number of sequences better than 10.0: 1
Number of HSP's gapped: 28
Number of HSP's successfully gapped: 18
Length of query: 111
Length of database: 2,407,596
Length adjustment: 70
Effective length of query: 41
Effective length of database: 1,446,496
Effective search space: 59306336
Effective search space used: 59306336
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 47 (22.4 bits)