BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy62
(262 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
pdb|3O47|B Chain B, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
Length = 329
Score = 160 bits (404), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 69/94 (73%), Positives = 81/94 (86%)
Query: 2 CFECNAHNPQWASVTYGIWICLECSGKHRGLGVHLSFVRSISMDKWKDIELEKMKVGGNK 61
CFEC A NPQW SVTYGIWICLECSG+HRGLGVHLSFVRS++MDKWKDIELEKMK GGN
Sbjct: 40 CFECGAFNPQWVSVTYGIWICLECSGRHRGLGVHLSFVRSVTMDKWKDIELEKMKAGGNA 99
Query: 62 AAHDFLNAQPDWDDTMTIQQKYNTKAAALYRDKV 95
+FL +Q D+D ++Q+KYN++AAAL+RDKV
Sbjct: 100 KFREFLESQEDYDPCWSLQEKYNSRAAALFRDKV 133
>pdb|3DWD|A Chain A, Crystal Structure Of The Arfgap Domain Of Human Arfgap1
pdb|3DWD|B Chain B, Crystal Structure Of The Arfgap Domain Of Human Arfgap1
Length = 147
Score = 159 bits (403), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 69/94 (73%), Positives = 81/94 (86%)
Query: 2 CFECNAHNPQWASVTYGIWICLECSGKHRGLGVHLSFVRSISMDKWKDIELEKMKVGGNK 61
CFEC A NPQW SVTYGIWICLECSG+HRGLGVHLSFVRS++MDKWKDIELEKMK GGN
Sbjct: 41 CFECGAFNPQWVSVTYGIWICLECSGRHRGLGVHLSFVRSVTMDKWKDIELEKMKAGGNA 100
Query: 62 AAHDFLNAQPDWDDTMTIQQKYNTKAAALYRDKV 95
+FL +Q D+D ++Q+KYN++AAAL+RDKV
Sbjct: 101 KFREFLESQEDYDPCWSLQEKYNSRAAALFRDKV 134
>pdb|2CRW|A Chain A, Solution Structure Of The Arfgap Domain Of
Adp-Ribosylation Factor Gtpaseactivating Protein 3
(Arfgap 3)
Length = 149
Score = 104 bits (259), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 48/97 (49%), Positives = 65/97 (67%), Gaps = 3/97 (3%)
Query: 2 CFECNAHNPQWASVTYGIWICLECSGKHRGLGVHLSFVRSISMD-KWKDIELEKMKVGGN 60
CF+C A NP WAS+TYG+++C++CSG HR LGVHLSF+RS +D W +L M+VGGN
Sbjct: 32 CFDCGAKNPSWASITYGVFLCIDCSGSHRSLGVHLSFIRSTELDSNWSWFQLRCMQVGGN 91
Query: 61 KAAHDFLNAQPDWDDTMTIQQKYNTKAAALYRDKVSS 97
+A F + T KYN++AA LYR+K+ S
Sbjct: 92 ASASSFFHQHG--CSTNDTNAKYNSRAAQLYREKIKS 126
>pdb|2P57|A Chain A, Gap Domain Of Znf289, An Id1-Regulated Zinc Finger Protein
Length = 144
Score = 99.0 bits (245), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 47/96 (48%), Positives = 64/96 (66%), Gaps = 5/96 (5%)
Query: 2 CFECNAHNPQWASVTYGIWICLECSGKHRGLGVHLSFVRSISMD-KWKDIELEKMKVGGN 60
CF+C A NP WAS+TYG+++C++CSG HR LGVHLSF+RS +D W +L M+VGGN
Sbjct: 40 CFDCGAKNPSWASITYGVFLCIDCSGVHRSLGVHLSFIRSTELDSNWNWFQLRCMQVGGN 99
Query: 61 KAAHDFLNAQP-DWDDTMTIQQKYNTKAAALYRDKV 95
A F +D T KYN++AA +YR+K+
Sbjct: 100 ANATAFFRQHGCTANDANT---KYNSRAAQMYREKI 132
>pdb|3SUB|A Chain A, Crystal Structure Of The Catalytic Domain Of Plasmodium
Falciparum Arf Gtpase Activating Protein
pdb|3SUB|B Chain B, Crystal Structure Of The Catalytic Domain Of Plasmodium
Falciparum Arf Gtpase Activating Protein
Length = 163
Score = 92.0 bits (227), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 47/103 (45%), Positives = 62/103 (60%), Gaps = 3/103 (2%)
Query: 1 KCFECNAHNPQWASVTYGIWICLECSGKHRGLGVHLSFVRSISMDKWKDIELEKMKVGGN 60
KCF+C NP W SV +GI++C+ CSG HR LGVH+S VRSI MD + D +L+ + GGN
Sbjct: 24 KCFDCGISNPDWVSVNHGIFLCINCSGVHRSLGVHISIVRSIKMDIFTDEQLKYIDKGGN 83
Query: 61 KAAHDFLNAQPDWDDTMTIQQKYNTKAAALYRDKVSSSYMFNT 103
K +L D ++KY TKAA YR K+ S + N
Sbjct: 84 KKCQTYLENYGISD--FIPERKYRTKAADHYR-KILRSIVHNV 123
>pdb|2OWA|A Chain A, Crystal Structure Of Putative Gtpase Activating Protein
For Adp Ribosylation Factor From Cryptosporidium Parvum
(Cgd5_1040)
pdb|2OWA|B Chain B, Crystal Structure Of Putative Gtpase Activating Protein
For Adp Ribosylation Factor From Cryptosporidium Parvum
(Cgd5_1040)
Length = 138
Score = 83.6 bits (205), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 31/66 (46%), Positives = 47/66 (71%)
Query: 2 CFECNAHNPQWASVTYGIWICLECSGKHRGLGVHLSFVRSISMDKWKDIELEKMKVGGNK 61
CF+C + NP W S+++ ++ICL CS HR +GVH+SFVRS +DK+ I+L +M +GGN
Sbjct: 39 CFDCESRNPTWLSLSFAVFICLNCSSDHRKMGVHISFVRSSDLDKFTPIQLVRMDIGGNG 98
Query: 62 AAHDFL 67
A ++
Sbjct: 99 RARNYF 104
>pdb|2IQJ|A Chain A, Crystal Structure Of The Gap Domain Of Smap1l (Loc64744)
Stromal Membrane-Associated Protein 1-Like
pdb|2IQJ|B Chain B, Crystal Structure Of The Gap Domain Of Smap1l (Loc64744)
Stromal Membrane-Associated Protein 1-Like
Length = 134
Score = 68.6 bits (166), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 54/94 (57%), Gaps = 9/94 (9%)
Query: 2 CFECNAHNPQWASVTYGIWICLECSGKHRGLGVHLSFVRSISMDKWKDIELEKMKVGGNK 61
C +C + P+WAS G++IC+ C+G HR LGVH+S V+S+++D+W +++ M+ GN
Sbjct: 30 CADCQSKGPRWASWNIGVFICIRCAGIHRNLGVHISRVKSVNLDQWTQEQIQCMQEMGNG 89
Query: 62 AAHDFLNA-------QPDWDDTMT--IQQKYNTK 86
A+ A +P D + I+ KY K
Sbjct: 90 KANRLYEAYLPETFRRPQIDPAVEGFIRDKYEKK 123
>pdb|2CRR|A Chain A, Solution Structure Of Arfgap Domain From Human Smap1
Length = 141
Score = 68.2 bits (165), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 44/68 (64%)
Query: 2 CFECNAHNPQWASVTYGIWICLECSGKHRGLGVHLSFVRSISMDKWKDIELEKMKVGGNK 61
C +C A P+WAS G++IC+ C+G HR LGVH+S V+S+++D+W +++ M+ GN
Sbjct: 32 CADCEAKGPRWASWNIGVFICIRCAGIHRNLGVHISRVKSVNLDQWTAEQIQCMQDMGNT 91
Query: 62 AAHDFLNA 69
A A
Sbjct: 92 KARLLYEA 99
>pdb|4F1P|A Chain A, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
pdb|4F1P|B Chain B, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
Length = 368
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 39/55 (70%), Gaps = 1/55 (1%)
Query: 1 KCFECNAHNPQWASVTYGIWICLECSGKHRGLGVHLSFVRSISMDKWKDIELEKM 55
+C +C P+WAS+ G+ +C++CSG HR LGVH S VRS+++D W+ EL K+
Sbjct: 47 QCCDCREPAPEWASINLGVTLCIQCSGIHRSLGVHFSKVRSLTLDSWEP-ELVKL 100
>pdb|3JUE|A Chain A, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
pdb|3JUE|B Chain B, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
Length = 368
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 39/55 (70%), Gaps = 1/55 (1%)
Query: 1 KCFECNAHNPQWASVTYGIWICLECSGKHRGLGVHLSFVRSISMDKWKDIELEKM 55
+C +C P+WAS+ G+ +C++CSG HR LGVH S VRS+++D W+ EL K+
Sbjct: 47 QCCDCREPAPEWASINLGVTLCIQCSGIHRSLGVHFSKVRSLTLDSWEP-ELVKL 100
>pdb|3T9K|A Chain A, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
pdb|3T9K|B Chain B, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
Length = 390
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 39/55 (70%), Gaps = 1/55 (1%)
Query: 1 KCFECNAHNPQWASVTYGIWICLECSGKHRGLGVHLSFVRSISMDKWKDIELEKM 55
+C +C P+WAS+ G+ +C++CSG HR LGVH S VRS+++D W+ EL K+
Sbjct: 47 QCCDCREPAPEWASINLGVTLCIQCSGIHRSLGVHFSKVRSLTLDSWEP-ELVKL 100
>pdb|3FEH|A Chain A, Crystal Structure Of Full Length Centaurin Alpha-1
pdb|3LJU|X Chain X, Crystal Structure Of Full Length Centaurin Alpha-1 Bound
With The Head Group Of Pip3
Length = 386
Score = 65.1 bits (157), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 42/63 (66%), Gaps = 1/63 (1%)
Query: 1 KCFECNAHNPQWASVTYGIWICLECSGKHRGLGVHLSFVRSISMDKWKDIELEKMKVGGN 60
+C +C A +P WAS T G++ICL CSG HR + +S V+S+ +D W++ ++E M GN
Sbjct: 36 RCADCGAPDPDWASYTLGVFICLSCSGIHRNIP-QVSKVKSVRLDAWEEAQVEFMASHGN 94
Query: 61 KAA 63
AA
Sbjct: 95 DAA 97
>pdb|3FM8|C Chain C, Crystal Structure Of Full Length Centaurin Alpha-1 Bound
With The Fha Domain Of Kif13b (Capri Target)
pdb|3FM8|D Chain D, Crystal Structure Of Full Length Centaurin Alpha-1 Bound
With The Fha Domain Of Kif13b (Capri Target)
pdb|3MDB|C Chain C, Crystal Structure Of The Ternary Complex Of Full Length
Centaurin Alpha-1, Kif13b Fha Domain, And Ip4
pdb|3MDB|D Chain D, Crystal Structure Of The Ternary Complex Of Full Length
Centaurin Alpha-1, Kif13b Fha Domain, And Ip4
Length = 392
Score = 64.7 bits (156), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 42/63 (66%), Gaps = 1/63 (1%)
Query: 1 KCFECNAHNPQWASVTYGIWICLECSGKHRGLGVHLSFVRSISMDKWKDIELEKMKVGGN 60
+C +C A +P WAS T G++ICL CSG HR + +S V+S+ +D W++ ++E M GN
Sbjct: 38 RCADCGAPDPDWASYTLGVFICLSCSGIHRNIP-QVSKVKSVRLDAWEEAQVEFMASHGN 96
Query: 61 KAA 63
AA
Sbjct: 97 DAA 99
>pdb|1DCQ|A Chain A, Crystal Structure Of The Arf-Gap Domain And Ankyrin
Repeats Of Papbeta
Length = 278
Score = 60.5 bits (145), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 54/107 (50%), Gaps = 5/107 (4%)
Query: 2 CFECNAHNPQWASVTYGIWICLECSGKHRGLGVHLSFVRSISMDKWKDIELEKMKVGGNK 61
C +C A +P W S GI C+ECSG HR LGVH S ++S+++D EL K GN
Sbjct: 20 CCDCGAPDPTWLSTNLGILTCIECSGIHRELGVHYSRMQSLTLDVLGTSELLLAKNIGNA 79
Query: 62 AAHDFLNAQPDWDDTMTIQQKYNTKAAALYR-DKVSSSYMFNTFTTK 107
++ + +D + K N + + R D +++ YM + K
Sbjct: 80 GFNEIMECCLPSEDPV----KPNPGSDMIARKDYITAKYMERRYARK 122
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 40/70 (57%)
Query: 1 KCFECNAHNPQWASVTYGIWICLECSGKHRGLGVHLSFVRSISMDKWKDIELEKMKVGGN 60
+C +C A +P W S G+ C++CSG HR LGV S ++S+++D EL GN
Sbjct: 25 QCCDCGAADPTWLSTNLGVLTCIQCSGVHRELGVRFSRMQSLTLDLLGPSELLLALNMGN 84
Query: 61 KAAHDFLNAQ 70
+ ++ + AQ
Sbjct: 85 TSFNEVMEAQ 94
>pdb|2B0O|E Chain E, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|F Chain F, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|G Chain G, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|H Chain H, Crystal Structure Of Uplc1 Gap Domain
Length = 301
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 40/70 (57%)
Query: 1 KCFECNAHNPQWASVTYGIWICLECSGKHRGLGVHLSFVRSISMDKWKDIELEKMKVGGN 60
+C +C A +P W S G+ C++CSG HR LGV S ++S+++D EL GN
Sbjct: 44 QCCDCGAADPTWLSTNLGVLTCIQCSGVHRELGVRFSRMQSLTLDLLGPSELLLALNMGN 103
Query: 61 KAAHDFLNAQ 70
+ ++ + AQ
Sbjct: 104 TSFNEVMEAQ 113
>pdb|2D9L|A Chain A, Solution Structure Of The Arfgap Domain Of Human Rip
Length = 134
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 49/98 (50%), Gaps = 13/98 (13%)
Query: 1 KCFECNAHNPQWASVTYGIWICLECSGKHRGLGVHLSFVRSISMDKWKDIELEKMKVGGN 60
KCF+C+ P + ++T G ++C CSG RGL V+SISM + E+E ++ GN
Sbjct: 22 KCFDCDQRGPTYVNMTVGSFVCTSCSGSLRGLNPPHR-VKSISMTTFTQQEIEFLQKHGN 80
Query: 61 KAAH--------DFLNAQPDWDDTMTI----QQKYNTK 86
+ D +A PD+ D + Q+KY K
Sbjct: 81 EVCKQIWLGLFDDRSSAIPDFRDPQKVKEFLQEKYEKK 118
>pdb|2OLM|A Chain A, Arfgap Domain Of Hiv-1 Rev Binding Protein
Length = 140
Score = 51.6 bits (122), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 49/98 (50%), Gaps = 13/98 (13%)
Query: 1 KCFECNAHNPQWASVTYGIWICLECSGKHRGLGVHLSFVRSISMDKWKDIELEKMKVGGN 60
KCF+C+ P + ++T G ++C CSG RGL V+SISM + E+E ++ GN
Sbjct: 27 KCFDCDQRGPTYVNMTVGSFVCTSCSGSLRGLNPPHR-VKSISMTTFTQQEIEFLQKHGN 85
Query: 61 KAAH--------DFLNAQPDWDDTMTI----QQKYNTK 86
+ D +A PD+ D + Q+KY K
Sbjct: 86 EVCKQIWLGLFDDRSSAIPDFRDPQKVKEFLQEKYEKK 123
>pdb|2PK3|A Chain A, Crystal Structure Of A Gdp-4-Keto-6-Deoxy-D-Mannose
Reductase
pdb|2PK3|B Chain B, Crystal Structure Of A Gdp-4-Keto-6-Deoxy-D-Mannose
Reductase
Length = 321
Score = 28.9 bits (63), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 4/58 (6%)
Query: 17 YGIWICLECSGKHRGLGVHLSFVRSISMDKWKDIELEK----MKVGGNKAAHDFLNAQ 70
YG+ I + H G G L FV + DIE+EK +KVG +A DF + +
Sbjct: 170 YGMDIIHTRTFNHIGPGQSLGFVTQDFAKQIVDIEMEKQEPIIKVGNLEAVRDFTDVR 227
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.132 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,330,877
Number of Sequences: 62578
Number of extensions: 199281
Number of successful extensions: 442
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 417
Number of HSP's gapped (non-prelim): 21
length of query: 262
length of database: 14,973,337
effective HSP length: 97
effective length of query: 165
effective length of database: 8,903,271
effective search space: 1469039715
effective search space used: 1469039715
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)