Query psy62
Match_columns 262
No_of_seqs 225 out of 1108
Neff 5.3
Searched_HMMs 29240
Date Fri Aug 16 20:13:53 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy62.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/62hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3dwd_A ADP-ribosylation factor 100.0 2.5E-42 8.4E-47 289.4 7.7 108 1-108 40-147 (147)
2 2owa_A Arfgap-like finger doma 100.0 1.3E-38 4.4E-43 265.1 8.5 100 1-100 38-137 (138)
3 3sub_A ADP-ribosylation factor 100.0 4.2E-37 1.4E-41 261.2 9.4 101 1-103 24-124 (163)
4 2crw_A ARF GAP 3, ADP-ribosyla 100.0 2E-37 6.9E-42 260.7 7.1 98 1-100 31-129 (149)
5 2p57_A GTPase-activating prote 100.0 1.2E-36 4.1E-41 254.5 7.5 98 1-100 39-137 (144)
6 2iqj_A Stromal membrane-associ 100.0 5.9E-34 2E-38 236.0 7.2 101 1-108 29-129 (134)
7 2crr_A Stromal membrane-associ 100.0 9.5E-34 3.2E-38 236.6 7.1 105 1-112 31-135 (141)
8 2olm_A Nucleoporin-like protei 100.0 1.4E-33 4.8E-38 235.3 7.5 104 1-109 27-130 (140)
9 3o47_A ADP-ribosylation factor 100.0 1.9E-32 6.4E-37 252.6 8.8 111 1-111 39-149 (329)
10 3jue_A Arfgap with coiled-coil 100.0 1.5E-29 5E-34 237.5 7.6 105 1-108 47-151 (368)
11 3lju_X ARF-GAP with dual PH do 99.9 1.6E-28 5.4E-33 232.9 7.0 104 1-109 36-139 (386)
12 2b0o_E UPLC1; arfgap, structur 99.9 1.8E-26 6.3E-31 208.8 7.9 105 1-108 44-148 (301)
13 3lvq_E ARF-GAP with SH3 domain 99.9 2.2E-26 7.6E-31 220.6 7.3 106 1-109 25-130 (497)
14 1dcq_A PYK2-associated protein 99.9 3.1E-26 1.1E-30 204.9 7.5 106 1-109 19-124 (278)
15 1u5k_A Hypothetical protein; O 84.4 1.3 4.6E-05 38.2 5.4 47 1-63 152-198 (244)
16 1gnf_A Transcription factor GA 74.4 1.5 5.3E-05 29.4 1.9 35 1-35 6-41 (46)
17 2vut_I AREA, nitrogen regulato 72.3 1.9 6.6E-05 28.4 2.0 34 1-34 3-37 (43)
18 4gat_A Nitrogen regulatory pro 64.6 3.4 0.00012 29.7 2.1 34 1-34 11-45 (66)
19 4hc9_A Trans-acting T-cell-spe 63.3 3.2 0.00011 32.7 2.0 35 1-35 7-42 (115)
20 3dfx_A Trans-acting T-cell-spe 62.1 2.5 8.4E-05 30.2 1.0 34 1-34 9-43 (63)
21 2kae_A GATA-type transcription 52.9 3.1 0.0001 30.4 0.2 34 1-35 10-46 (71)
22 1dl6_A Transcription factor II 47.8 8.5 0.00029 26.6 1.8 27 1-28 13-39 (58)
23 1d4u_A Nucleotide excision rep 43.9 5.1 0.00017 31.6 0.1 28 1-28 7-35 (111)
24 1eze_A Cholesteryl ester trans 34.7 10 0.00035 24.5 0.5 17 234-250 9-25 (38)
25 1ffk_W Ribosomal protein L37AE 33.8 16 0.00056 26.6 1.5 25 1-27 29-53 (73)
26 3c5k_A HD6, histone deacetylas 32.2 22 0.00076 27.5 2.2 23 1-23 26-48 (109)
27 1x58_A Hypothetical protein 49 31.4 54 0.0018 23.2 3.8 39 45-84 9-53 (62)
28 4hc9_A Trans-acting T-cell-spe 30.5 23 0.00078 27.8 2.0 35 1-35 61-96 (115)
29 4bbr_M Transcription initiatio 30.0 27 0.00093 32.0 2.7 28 1-28 23-51 (345)
30 3j21_d 50S ribosomal protein L 29.6 14 0.00049 27.9 0.6 26 1-27 35-77 (89)
31 3j21_i 50S ribosomal protein L 28.9 25 0.00085 26.3 1.8 24 1-26 37-60 (83)
32 3k1f_M Transcription initiatio 28.6 38 0.0013 29.0 3.1 28 1-28 23-51 (197)
33 1cit_A NGFI-B, protein (orphan 28.4 31 0.0011 25.7 2.3 27 1-30 2-28 (89)
34 3izc_m 60S ribosomal protein R 28.2 30 0.001 26.4 2.2 24 1-26 38-61 (92)
35 2han_B Ecdysone receptor; tran 28.0 23 0.00079 27.9 1.6 27 1-30 10-36 (119)
36 3cc2_Z 50S ribosomal protein L 28.0 17 0.00057 29.0 0.7 25 1-27 62-86 (116)
37 3j21_g 50S ribosomal protein L 27.4 12 0.00042 25.5 -0.1 20 1-26 16-35 (51)
38 1pft_A TFIIB, PFTFIIBN; N-term 27.3 26 0.00087 22.9 1.5 26 1-27 7-32 (50)
39 1dsz_A RAR-alpha, retinoic aci 26.6 31 0.001 25.6 2.0 27 1-30 6-32 (86)
40 1a6y_A Orphan nuclear receptor 26.5 26 0.00087 26.5 1.5 26 2-30 10-35 (94)
41 3h0g_L DNA-directed RNA polyme 26.3 24 0.00081 25.1 1.2 27 1-32 23-49 (63)
42 2han_A Protein ultraspiracle; 26.1 27 0.00092 26.3 1.6 26 2-30 13-38 (93)
43 3iz5_m 60S ribosomal protein L 25.1 30 0.001 26.3 1.7 24 1-26 38-61 (92)
44 2uzg_A Ubiquitin carboxyl-term 24.6 30 0.001 26.1 1.6 23 1-23 27-52 (97)
45 1vq8_Z 50S ribosomal protein L 24.5 25 0.00085 26.1 1.1 26 1-28 29-54 (83)
46 1ynw_B Retinoic acid receptor 24.4 25 0.00086 26.8 1.1 27 1-30 5-31 (99)
47 3k7a_M Transcription initiatio 23.8 26 0.00089 31.9 1.3 29 1-29 23-52 (345)
48 1r4i_A Androgen receptor; AR, 23.8 29 0.00099 26.8 1.4 26 2-30 10-35 (105)
49 1hcq_A Protein (estrogen recep 23.7 32 0.0011 25.4 1.6 26 2-30 7-32 (84)
50 2nll_B Protein (thyroid hormon 23.3 23 0.0008 27.1 0.8 27 1-30 3-29 (103)
51 3jyw_9 60S ribosomal protein L 23.0 26 0.0009 25.5 0.9 24 1-26 28-51 (72)
52 1kb2_A Vitamin D3 receptor; VD 21.7 27 0.00093 27.1 0.9 27 1-30 8-34 (110)
53 2a66_A Orphan nuclear receptor 21.7 34 0.0012 26.7 1.5 26 2-30 12-37 (113)
54 2ebl_A COUP transcription fact 21.5 29 0.00099 25.9 0.9 26 2-30 10-35 (89)
55 3u5e_g 60S ribosomal protein L 21.1 24 0.00082 28.2 0.4 26 1-26 43-85 (121)
56 1lo1_A Steroid hormone recepto 21.0 25 0.00086 26.8 0.5 26 2-30 7-32 (98)
57 2roh_A RTBP1, telomere binding 20.6 28 0.00095 27.7 0.7 44 44-87 31-81 (122)
58 2ida_A Hypothetical protein; z 20.3 13 0.00046 28.7 -1.2 24 1-28 20-43 (102)
59 3cbb_A HNF-4-alpha, hepatocyte 20.3 31 0.0011 25.0 0.9 27 1-30 2-28 (78)
No 1
>3dwd_A ADP-ribosylation factor GTPase-activating protein; GAP, structural genomics consorti ER-golgi transport, golgi apparatus, GTPase activation; 2.40A {Homo sapiens}
Probab=100.00 E-value=2.5e-42 Score=289.41 Aligned_cols=108 Identities=64% Similarity=1.151 Sum_probs=96.2
Q ss_pred CCCCCCCCCCCeeEcccceeEehhhhhhhcCCCCCccceeecccCCCCHHHHHhhhcCChHHHHHHHhhCCCCCCCchhh
Q psy62 1 KCFECNAHNPQWASVTYGIWICLECSGKHRGLGVHLSFVRSISMDKWKDIELEKMKVGGNKAAHDFLNAQPDWDDTMTIQ 80 (262)
Q Consensus 1 ~C~DCga~~P~WaSv~~GifiC~~CsgvHR~LGvhiS~VrSitmD~W~~~el~~m~~gGN~~~n~f~e~~~~~~~~~~I~ 80 (262)
+|+|||+++|+|||++||||||++|+|+||.||+|||+||||+||.|+++||+.|+.+||.++|+||+++.++++..+|+
T Consensus 40 ~CaDCga~~P~WaS~nlGvfiC~~CSgiHR~LG~hISkVkSl~LD~W~~~el~~m~~~GN~~an~~~ea~~~~~~~~~~~ 119 (147)
T 3dwd_A 40 VCFECGAFNPQWVSVTYGIWICLECSGRHRGLGVHLSFVRSVTMDKWKDIELEKMKAGGNAKFREFLESQEDYDPCWSLQ 119 (147)
T ss_dssp BCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEESCC--CCHHHHHHHHHCCHHHHHHHHHTSTTCCTTCCHH
T ss_pred ccCCCCCCCCCeEEecccEeEhHhhChHHhcCCCCCCccccccccCCCHHHHHHHHHHhhHHHHHHHHhCCCCCCCCCHH
Confidence 59999999999999999999999999999999999999999999999999999999999999999999998888889999
Q ss_pred hhhccHHHHHHHHHHhcccCCCCcccCC
Q psy62 81 QKYNTKAAALYRDKVSSSYMFNTFTTKG 108 (262)
Q Consensus 81 ~KY~~~aa~~yr~kl~~~~~gr~~~~~~ 108 (262)
+||+++++++||++|+++++||+|++++
T Consensus 120 ~KY~s~aA~~Yr~~l~~~~eg~~w~~~~ 147 (147)
T 3dwd_A 120 EKYNSRAAALFRDKVVALAEGREWSLES 147 (147)
T ss_dssp HHHTSHHHHHHHHHHHHHHC--------
T ss_pred HhhCCHHHHHHHHHHHHHHcCCcCCCCC
Confidence 9999999999999999999999999874
No 2
>2owa_A Arfgap-like finger domain containing protein; zinc finger protein, cysteine-rich motif, GTPase activation; 2.00A {Cryptosporidium parvum iowa II}
Probab=100.00 E-value=1.3e-38 Score=265.10 Aligned_cols=100 Identities=33% Similarity=0.741 Sum_probs=95.9
Q ss_pred CCCCCCCCCCCeeEcccceeEehhhhhhhcCCCCCccceeecccCCCCHHHHHhhhcCChHHHHHHHhhCCCCCCCchhh
Q psy62 1 KCFECNAHNPQWASVTYGIWICLECSGKHRGLGVHLSFVRSISMDKWKDIELEKMKVGGNKAAHDFLNAQPDWDDTMTIQ 80 (262)
Q Consensus 1 ~C~DCga~~P~WaSv~~GifiC~~CsgvHR~LGvhiS~VrSitmD~W~~~el~~m~~gGN~~~n~f~e~~~~~~~~~~I~ 80 (262)
+|+|||+++|+|||++||||||++|+|+||.||+||||||||+||.|+++||++|+.+||.++|+||+++.+.++..+++
T Consensus 38 ~CaDCga~~P~WaS~n~GvfiC~~CsgiHR~LG~hiS~VrSl~lD~w~~~~l~~m~~~GN~~an~~~e~~~~~~~~~~~~ 117 (138)
T 2owa_A 38 TCFDCESRNPTWLSLSFAVFICLNCSSDHRKMGVHISFVRSSDLDKFTPIQLVRMDIGGNGRARNYFKQVLGVNFSPKTK 117 (138)
T ss_dssp BCTTTCCBSCCEEETTTTEEECHHHHHHHHTTCTTTCCEEETTTSCCCHHHHHHHHHCCHHHHHHHHHHHTCTTCCGGGC
T ss_pred cCCCCcCCCCCeEEecCCEEEhHhhhHHHhCCCCCCCeeeecCcCcCCHHHHHHHHhhccHHHHHHHHHHcCCCCCCCHH
Confidence 59999999999999999999999999999999999999999999999999999999999999999999955667788999
Q ss_pred hhhccHHHHHHHHHHhcccC
Q psy62 81 QKYNTKAAALYRDKVSSSYM 100 (262)
Q Consensus 81 ~KY~~~aa~~yr~kl~~~~~ 100 (262)
+||+++++++||++|.++++
T Consensus 118 ~kY~s~~a~~Y~~kL~~~~~ 137 (138)
T 2owa_A 118 EYASSICGRQYKQILDSEIS 137 (138)
T ss_dssp HHHHSHHHHHHHHHHHHHTT
T ss_pred HHHhhHHHHHHHHHHHHHHh
Confidence 99999999999999999876
No 3
>3sub_A ADP-ribosylation factor GTPase-activating protein; protein trafficking, hydrolase AC; 2.40A {Plasmodium falciparum 3D7}
Probab=100.00 E-value=4.2e-37 Score=261.23 Aligned_cols=101 Identities=44% Similarity=0.785 Sum_probs=94.3
Q ss_pred CCCCCCCCCCCeeEcccceeEehhhhhhhcCCCCCccceeecccCCCCHHHHHhhhcCChHHHHHHHhhCCCCCCCchhh
Q psy62 1 KCFECNAHNPQWASVTYGIWICLECSGKHRGLGVHLSFVRSISMDKWKDIELEKMKVGGNKAAHDFLNAQPDWDDTMTIQ 80 (262)
Q Consensus 1 ~C~DCga~~P~WaSv~~GifiC~~CsgvHR~LGvhiS~VrSitmD~W~~~el~~m~~gGN~~~n~f~e~~~~~~~~~~I~ 80 (262)
+|+|||+++|+|||++||||||++|+|+||.||+|||+||||+||.|+++||+.|+.+||.++++||+.+.. + ...++
T Consensus 24 ~CaDCga~~P~WaS~nlGvflCi~CSGiHR~LG~hISkVKSltLD~Wt~e~l~~m~~~GN~~an~~~e~~g~-~-~~~p~ 101 (163)
T 3sub_A 24 KCFDCGISNPDWVSVNHGIFLCINCSGVHRSLGVHISIVRSIKMDIFTDEQLKYIDKGGNKKCQTYLENYGI-S-DFIPE 101 (163)
T ss_dssp BCTTTCCBSCCEEETTTTEEECHHHHHHHHHTCTTTCCEEETTTCCCCHHHHHHHHHCCHHHHHHHHHHTTC-T-TSCHH
T ss_pred ccccCCCCCCCeEEecCCeeEHHhhhHHhcCCCCCCCeeeeccccCcCHHHHHHHHhhCHHHHHHHHHHcCC-c-ccChh
Confidence 599999999999999999999999999999999999999999999999999999999999999999999754 2 23457
Q ss_pred hhhccHHHHHHHHHHhcccCCCC
Q psy62 81 QKYNTKAAALYRDKVSSSYMFNT 103 (262)
Q Consensus 81 ~KY~~~aa~~yr~kl~~~~~gr~ 103 (262)
+||.++++++||++|+++++|++
T Consensus 102 ~KY~s~aA~~Yr~~L~~~v~~~~ 124 (163)
T 3sub_A 102 RKYRTKAADHYRKILRSIVHNVD 124 (163)
T ss_dssp HHTTBHHHHHHHHHHHHHHTTCC
T ss_pred hcCCCHHHHHHHHHHHHHHcCCC
Confidence 89999999999999999999944
No 4
>2crw_A ARF GAP 3, ADP-ribosylation factor GTPase-activating protein 3; arfgap domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=100.00 E-value=2e-37 Score=260.73 Aligned_cols=98 Identities=49% Similarity=0.969 Sum_probs=93.0
Q ss_pred CCCCCCCCCCCeeEcccceeEehhhhhhhcCCCCCccceeecccCC-CCHHHHHhhhcCChHHHHHHHhhCCCCCCCchh
Q psy62 1 KCFECNAHNPQWASVTYGIWICLECSGKHRGLGVHLSFVRSISMDK-WKDIELEKMKVGGNKAAHDFLNAQPDWDDTMTI 79 (262)
Q Consensus 1 ~C~DCga~~P~WaSv~~GifiC~~CsgvHR~LGvhiS~VrSitmD~-W~~~el~~m~~gGN~~~n~f~e~~~~~~~~~~I 79 (262)
+|+|||+++|+|||++||||||++|+|+||.||+||||||||+||. |+++||+.|+.+||.++|+||+++... ..+|
T Consensus 31 ~CaDCga~~P~WaS~n~GvfiC~~CsgiHR~LG~hiS~VrSl~LD~~W~~~~l~~m~~~GN~~an~~~e~~~~~--~~~i 108 (149)
T 2crw_A 31 VCFDCGAKNPSWASITYGVFLCIDCSGSHRSLGVHLSFIRSTELDSNWSWFQLRCMQVGGNASASSFFHQHGCS--TNDT 108 (149)
T ss_dssp BCSSSCCBSCCCEETTTTEECCHHHHHHHHHHCTTTCCEECSSSCCCCCHHHHHHHHTTCHHHHHHHHHHHCCC--CCCH
T ss_pred cCCCCcCCCCCcEEeccCEEEchhcchhhccCCCCCCeeeccccCCCCCHHHHHHHHHHhhHHHHHHHHhcCCC--Ccch
Confidence 5999999999999999999999999999999999999999999996 999999999999999999999998653 5689
Q ss_pred hhhhccHHHHHHHHHHhcccC
Q psy62 80 QQKYNTKAAALYRDKVSSSYM 100 (262)
Q Consensus 80 ~~KY~~~aa~~yr~kl~~~~~ 100 (262)
++||+++++++||++|.++++
T Consensus 109 ~~KY~s~~a~~Yr~~l~~~~~ 129 (149)
T 2crw_A 109 NAKYNSRAAQLYREKIKSLAS 129 (149)
T ss_dssp HHHTTSHHHHHHHHHHHHHHH
T ss_pred hhCcCcHHHHHHHHHHHHHHH
Confidence 999999999999999998765
No 5
>2p57_A GTPase-activating protein ZNF289; zinc finger, GAP, structural genomics, structural genomics consortium, SGC, metal binding protein; 1.80A {Homo sapiens}
Probab=100.00 E-value=1.2e-36 Score=254.54 Aligned_cols=98 Identities=46% Similarity=0.934 Sum_probs=92.5
Q ss_pred CCCCCCCCCCCeeEcccceeEehhhhhhhcCCCCCccceeecccCC-CCHHHHHhhhcCChHHHHHHHhhCCCCCCCchh
Q psy62 1 KCFECNAHNPQWASVTYGIWICLECSGKHRGLGVHLSFVRSISMDK-WKDIELEKMKVGGNKAAHDFLNAQPDWDDTMTI 79 (262)
Q Consensus 1 ~C~DCga~~P~WaSv~~GifiC~~CsgvHR~LGvhiS~VrSitmD~-W~~~el~~m~~gGN~~~n~f~e~~~~~~~~~~I 79 (262)
+|+|||+++|+|||++||||||++|+|+||.||+|||+||||+||. |+++||+.|+.+||.++|+||+++... ..+|
T Consensus 39 ~CaDCga~~P~WaS~n~GvfiC~~CsgiHR~LG~hIS~VrSl~LD~~W~~~~l~~m~~~GN~~an~~~e~~g~~--~~~~ 116 (144)
T 2p57_A 39 ACFDCGAKNPSWASITYGVFLCIDCSGVHRSLGVHLSFIRSTELDSNWNWFQLRCMQVGGNANATAFFRQHGCT--ANDA 116 (144)
T ss_dssp BCTTTCCBSCCEEEGGGTEEECHHHHHHHHHHCTTTCCEEESSSCCCCCHHHHHHHHHCCHHHHHHHHHHTTCC--CCSH
T ss_pred cCCCCcCCCCCeEEeccCEEEhhhchHHHcCCCCCCCeeeecccCCCCCHHHHHHHHHhCHHHHHHHHHHcCCC--CCch
Confidence 5999999999999999999999999999999999999999999996 999999999999999999999998543 2489
Q ss_pred hhhhccHHHHHHHHHHhcccC
Q psy62 80 QQKYNTKAAALYRDKVSSSYM 100 (262)
Q Consensus 80 ~~KY~~~aa~~yr~kl~~~~~ 100 (262)
++||+++++++||++|+++++
T Consensus 117 ~~KY~s~aA~~Yr~~l~~~~~ 137 (144)
T 2p57_A 117 NTKYNSRAAQMYREKIRQLGS 137 (144)
T ss_dssp HHHHTSHHHHHHHHHHHHHHH
T ss_pred hhccCcHHHHHHHHHHHHHHH
Confidence 999999999999999998875
No 6
>2iqj_A Stromal membrane-associated protein 1-like; zinc, structural genomics, structural genomics consortium, SGC, protein transport; 1.90A {Homo sapiens}
Probab=100.00 E-value=5.9e-34 Score=236.00 Aligned_cols=101 Identities=28% Similarity=0.612 Sum_probs=87.3
Q ss_pred CCCCCCCCCCCeeEcccceeEehhhhhhhcCCCCCccceeecccCCCCHHHHHhhhcCChHHHHHHHhhCCCCCCCchhh
Q psy62 1 KCFECNAHNPQWASVTYGIWICLECSGKHRGLGVHLSFVRSISMDKWKDIELEKMKVGGNKAAHDFLNAQPDWDDTMTIQ 80 (262)
Q Consensus 1 ~C~DCga~~P~WaSv~~GifiC~~CsgvHR~LGvhiS~VrSitmD~W~~~el~~m~~gGN~~~n~f~e~~~~~~~~~~I~ 80 (262)
+|+|||+++|+|||++||||||++|+|+||.||+|||+||||+||.|+++||+.|+.+||.++|+|||++.... . .
T Consensus 29 ~CaDCg~~~P~WaS~n~GvfiC~~CsgiHR~lG~hiS~VkSl~ld~w~~~~l~~m~~~GN~~an~~~e~~lp~~--~-~- 104 (134)
T 2iqj_A 29 FCADCQSKGPRWASWNIGVFICIRCAGIHRNLGVHISRVKSVNLDQWTQEQIQCMQEMGNGKANRLYEAYLPET--F-R- 104 (134)
T ss_dssp BCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCHHHHHHHHTCHHHHHHHHHTTTCCSS--C-C-
T ss_pred cCCcCcCCCCCeEEecCCEEEhHhhhHHHhcCCCCCCceeeccccCCCHHHHHHHHHHchHHHHHHHHhcCCcc--C-C-
Confidence 59999999999999999999999999999999999999999999999999999999999999999999874321 1 0
Q ss_pred hhhccHHHHHHHHHHhcccCCCCcccCC
Q psy62 81 QKYNTKAAALYRDKVSSSYMFNTFTTKG 108 (262)
Q Consensus 81 ~KY~~~aa~~yr~kl~~~~~gr~~~~~~ 108 (262)
|.... ...+++|+++|+.++|..+.
T Consensus 105 -~P~~~--~~~e~fIr~KY~~k~f~~~~ 129 (134)
T 2iqj_A 105 -RPQID--PAVEGFIRDKYEKKKYMDRS 129 (134)
T ss_dssp -CCCSH--HHHHHHHHHHHTSCTTCCTT
T ss_pred -CCCch--HHHHHHHHHHHhCCeeeCCc
Confidence 11111 23578999999999998765
No 7
>2crr_A Stromal membrane-associated protein SMAP1B; arfgap domain, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=100.00 E-value=9.5e-34 Score=236.57 Aligned_cols=105 Identities=30% Similarity=0.576 Sum_probs=89.2
Q ss_pred CCCCCCCCCCCeeEcccceeEehhhhhhhcCCCCCccceeecccCCCCHHHHHhhhcCChHHHHHHHhhCCCCCCCchhh
Q psy62 1 KCFECNAHNPQWASVTYGIWICLECSGKHRGLGVHLSFVRSISMDKWKDIELEKMKVGGNKAAHDFLNAQPDWDDTMTIQ 80 (262)
Q Consensus 1 ~C~DCga~~P~WaSv~~GifiC~~CsgvHR~LGvhiS~VrSitmD~W~~~el~~m~~gGN~~~n~f~e~~~~~~~~~~I~ 80 (262)
+|+|||+++|+|||++||||||++|+|+||.||+|||+||||+||.|+++||++|+.+||.++|+|||++......
T Consensus 31 ~CaDCga~~P~WaS~n~GvfiC~~CsgiHR~LG~hiS~VkSl~ld~w~~~~l~~m~~~GN~~an~~~e~~lp~~~~---- 106 (141)
T 2crr_A 31 YCADCEAKGPRWASWNIGVFICIRCAGIHRNLGVHISRVKSVNLDQWTAEQIQCMQDMGNTKARLLYEANLPENFR---- 106 (141)
T ss_dssp SCSSSCCSSCCSEETTTTEECCHHHHHHHHHHCTTTCCCBCSSSSCCCHHHHHHHHHTHHHHHHHHGGGSCCTTCC----
T ss_pred cCCCCCCCCCCeEEeccCeEEhhhhhHhHhcCCCCCCeeeECCCCCCCHHHHHHHHHHccHHHHHHHHhcCCcccC----
Confidence 5999999999999999999999999999999999999999999999999999999999999999999987432110
Q ss_pred hhhccHHHHHHHHHHhcccCCCCcccCCCCCC
Q psy62 81 QKYNTKAAALYRDKVSSSYMFNTFTTKGIFDF 112 (262)
Q Consensus 81 ~KY~~~aa~~yr~kl~~~~~gr~~~~~~~~~~ 112 (262)
|.... ...+++|+++|+.++|..+.....
T Consensus 107 -~P~~~--~~~e~fIr~KY~~k~f~~~~~~~~ 135 (141)
T 2crr_A 107 -RPQTD--QAVEFFIRDKYEKKKYYDKNAIAI 135 (141)
T ss_dssp -CCCSH--HHHHHHHHHHHTSCTTCCCGGGCC
T ss_pred -CCCch--HHHHHHHHHHHhcCcccCCCcccc
Confidence 11111 234689999999999997764433
No 8
>2olm_A Nucleoporin-like protein RIP; arfgap, GTPase-activating protein, REV-interacting protein, human immunodeficiency virus, AIDS, structural genomics; 1.48A {Homo sapiens} PDB: 2d9l_A
Probab=100.00 E-value=1.4e-33 Score=235.31 Aligned_cols=104 Identities=25% Similarity=0.464 Sum_probs=88.5
Q ss_pred CCCCCCCCCCCeeEcccceeEehhhhhhhcCCCCCccceeecccCCCCHHHHHhhhcCChHHHHHHHhhCCCCCCCchhh
Q psy62 1 KCFECNAHNPQWASVTYGIWICLECSGKHRGLGVHLSFVRSISMDKWKDIELEKMKVGGNKAAHDFLNAQPDWDDTMTIQ 80 (262)
Q Consensus 1 ~C~DCga~~P~WaSv~~GifiC~~CsgvHR~LGvhiS~VrSitmD~W~~~el~~m~~gGN~~~n~f~e~~~~~~~~~~I~ 80 (262)
+|+|||+++|+|||++||||||++|+|+||.||+| |+||||+||.|+++||++|+.+||..+|+|||++.+.. ....
T Consensus 27 ~CaDCg~~~P~WaS~n~GvfiC~~CsgiHR~LG~~-s~VrSl~ld~w~~~~l~~m~~~GN~~an~~~e~~~~~~-~~~~- 103 (140)
T 2olm_A 27 KCFDCDQRGPTYVNMTVGSFVCTSCSGSLRGLNPP-HRVKSISMTTFTQQEIEFLQKHGNEVCKQIWLGLFDDR-SSAI- 103 (140)
T ss_dssp SCTTTCSSCCCEEETTTTEEECHHHHHHHTTSSSC-CCEEETTTCCCCHHHHHHHHHCHHHHHHHHHTTTCCTT-TSCC-
T ss_pred cCCCCCCCCCCceeeccCEEEchhccchhccCCCc-ceeeecCCCCCCHHHHHHHHHhccHHHHHHHHhhCCcc-cCCC-
Confidence 59999999999999999999999999999999997 99999999999999999999999999999999875321 1111
Q ss_pred hhhccHHHHHHHHHHhcccCCCCcccCCC
Q psy62 81 QKYNTKAAALYRDKVSSSYMFNTFTTKGI 109 (262)
Q Consensus 81 ~KY~~~aa~~yr~kl~~~~~gr~~~~~~~ 109 (262)
........++++|+++|++++|+.++.
T Consensus 104 --P~~~d~~~~~~fIr~KYe~k~f~~~~~ 130 (140)
T 2olm_A 104 --PDFRDPQKVKEFLQEKYEKKRWYVPPE 130 (140)
T ss_dssp --CCTTCHHHHHHHHHHHHTSCTTCCCHH
T ss_pred --CCCCCHHHHHHHHHHHHcCCeeeCCcc
Confidence 111113467899999999999987653
No 9
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.97 E-value=1.9e-32 Score=252.59 Aligned_cols=111 Identities=62% Similarity=1.102 Sum_probs=104.8
Q ss_pred CCCCCCCCCCCeeEcccceeEehhhhhhhcCCCCCccceeecccCCCCHHHHHhhhcCChHHHHHHHhhCCCCCCCchhh
Q psy62 1 KCFECNAHNPQWASVTYGIWICLECSGKHRGLGVHLSFVRSISMDKWKDIELEKMKVGGNKAAHDFLNAQPDWDDTMTIQ 80 (262)
Q Consensus 1 ~C~DCga~~P~WaSv~~GifiC~~CsgvHR~LGvhiS~VrSitmD~W~~~el~~m~~gGN~~~n~f~e~~~~~~~~~~I~ 80 (262)
+|+|||+++|+|||++||||||++|+|+||.||+|||+||||+||.|+++||+.|+.+||.++|+||+.+.+.++...+.
T Consensus 39 ~c~dc~~~~~~~~~~~~~~~~c~~c~~~hr~~~~~~s~v~s~~~~~~~~~~~~~~~~~gN~~~n~~~e~~~~~~~~~~i~ 118 (329)
T 3o47_A 39 VCFECGAFNPQWVSVTYGIWICLECSGRHRGLGVHLSFVRSVTMDKWKDIELEKMKAGGNAKFREFLESQEDYDPCWSLQ 118 (329)
T ss_dssp BCTTTCCBSCCEEEGGGTEEECHHHHHHHHHHCTTTCCEEESSSCCCCHHHHHHHHHCCHHHHHHHHHTCSSCCTTCCHH
T ss_pred cCCCCCCCCCCeEEecCCEEEChhhhhhhcccCCCcCEEeeccccCCCHHHHHHHHHhCcHHHHHHHHhcCCCCCCCCcc
Confidence 59999999999999999999999999999999999999999999999999999999999999999999987777788999
Q ss_pred hhhccHHHHHHHHHHhcccCCCCcccCCCCC
Q psy62 81 QKYNTKAAALYRDKVSSSYMFNTFTTKGIFD 111 (262)
Q Consensus 81 ~KY~~~aa~~yr~kl~~~~~gr~~~~~~~~~ 111 (262)
++|..++++.|++++....++++|..++++.
T Consensus 119 ~~y~s~~A~lYr~kl~~~~~~~~~~~~~~~~ 149 (329)
T 3o47_A 119 EKYNSRAAALFRDKVVALAEGREWSLESSPA 149 (329)
T ss_dssp HHHHSHHHHHHHHHHHHHHTTCCCCSCC---
T ss_pred ccccchHHHHHhhhccccccCCccccccccc
Confidence 9999999999999999999999999887664
No 10
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.96 E-value=1.5e-29 Score=237.48 Aligned_cols=105 Identities=30% Similarity=0.540 Sum_probs=86.5
Q ss_pred CCCCCCCCCCCeeEcccceeEehhhhhhhcCCCCCccceeecccCCCCHHHHHhhhcCChHHHHHHHhhCCCCCCCchhh
Q psy62 1 KCFECNAHNPQWASVTYGIWICLECSGKHRGLGVHLSFVRSISMDKWKDIELEKMKVGGNKAAHDFLNAQPDWDDTMTIQ 80 (262)
Q Consensus 1 ~C~DCga~~P~WaSv~~GifiC~~CsgvHR~LGvhiS~VrSitmD~W~~~el~~m~~gGN~~~n~f~e~~~~~~~~~~I~ 80 (262)
+|+|||+++|+|||++||||||++|+|+||.||+|||+||||+||.|+++||++|+.+||..+|+|||++.+........
T Consensus 47 ~c~dc~~~~p~w~s~~~g~~~c~~c~~~hr~lg~~~s~v~s~~~d~w~~~~~~~~~~~gn~~~n~~~e~~~~~~~~~kp~ 126 (368)
T 3jue_A 47 QCCDCREPAPEWASINLGVTLCIQCSGIHRSLGVHFSKVRSLTLDSWEPELVKLMCELGNVIINQIYEARVEAMAVKKPG 126 (368)
T ss_dssp BCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCHHHHHHHHHSCHHHHHHHHTTTTTTTTCCCCC
T ss_pred cCCCCCCCCCCeEEecCCeEEcHhHHHHHhccCCCcCeeEEeecccccHHHHHHHHHHccHHHHHHHHhhcccccCcCCC
Confidence 59999999999999999999999999999999999999999999999999999999999999999999874311000000
Q ss_pred hhhccHHHHHHHHHHhcccCCCCcccCC
Q psy62 81 QKYNTKAAALYRDKVSSSYMFNTFTTKG 108 (262)
Q Consensus 81 ~KY~~~aa~~yr~kl~~~~~gr~~~~~~ 108 (262)
. -.. .....++|+++|+.++|....
T Consensus 127 ~-~~~--~~~re~fIr~KY~~k~f~~~l 151 (368)
T 3jue_A 127 P-SCS--RQEKEAWIHAKYVEKKFLTKL 151 (368)
T ss_dssp T-TSC--HHHHHHHHHHHHTSCTTCCSC
T ss_pred C-CCC--HHHHHHHHHHHHHhhcccccc
Confidence 0 011 123467899999999998764
No 11
>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C*
Probab=99.95 E-value=1.6e-28 Score=232.88 Aligned_cols=104 Identities=30% Similarity=0.549 Sum_probs=86.6
Q ss_pred CCCCCCCCCCCeeEcccceeEehhhhhhhcCCCCCccceeecccCCCCHHHHHhhhcCChHHHHHHHhhCCCCCCCchhh
Q psy62 1 KCFECNAHNPQWASVTYGIWICLECSGKHRGLGVHLSFVRSISMDKWKDIELEKMKVGGNKAAHDFLNAQPDWDDTMTIQ 80 (262)
Q Consensus 1 ~C~DCga~~P~WaSv~~GifiC~~CsgvHR~LGvhiS~VrSitmD~W~~~el~~m~~gGN~~~n~f~e~~~~~~~~~~I~ 80 (262)
.|+|||+++|+|||++||||||++|||+||.| +|||+||||+||.|+++||++|+.+||.++|+|||++.+.....+-
T Consensus 36 ~C~dC~~~~p~w~s~~~g~~~C~~Csg~hr~l-~his~v~s~~ld~w~~~~~~~~~~~gN~~~~~~~e~~~~~~~~~p~- 113 (386)
T 3lju_X 36 RCADCGAPDPDWASYTLGVFICLSCSGIHRNI-PQVSKVKSVRLDAWEEAQVEFMASHGNDAARARFESKVPSFYYRPT- 113 (386)
T ss_dssp BCTTTCCBSCCEEETTTTEEECHHHHHHHHTC-TTTCCEEETTTSCCCHHHHHHHHHSSHHHHHHHHTTTCCTTSCCCC-
T ss_pred cCccCCCCCCCeEEecccEEEhhhhchHhhCC-CccceeeeecccCCCHHHHHHHHHhcchHHHHHHhccCCccCCCCC-
Confidence 59999999999999999999999999999999 9999999999999999999999999999999999987532110110
Q ss_pred hhhccHHHHHHHHHHhcccCCCCcccCCC
Q psy62 81 QKYNTKAAALYRDKVSSSYMFNTFTTKGI 109 (262)
Q Consensus 81 ~KY~~~aa~~yr~kl~~~~~gr~~~~~~~ 109 (262)
..+ ......++|+++|+.++|..++.
T Consensus 114 --~~~-~~~~~e~fIr~KY~~~~f~~~~~ 139 (386)
T 3lju_X 114 --PSD-CQLLREQWIRAKYERQEFIYPEK 139 (386)
T ss_dssp --TTS-CHHHHHHHHHHHHTSCTTTSGGG
T ss_pred --Ccc-chHHHHHEHHhhhCCCEEECCcc
Confidence 111 11234468999999999997764
No 12
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.93 E-value=1.8e-26 Score=208.84 Aligned_cols=105 Identities=28% Similarity=0.511 Sum_probs=84.4
Q ss_pred CCCCCCCCCCCeeEcccceeEehhhhhhhcCCCCCccceeecccCCCCHHHHHhhhcCChHHHHHHHhhCCCCCCCchhh
Q psy62 1 KCFECNAHNPQWASVTYGIWICLECSGKHRGLGVHLSFVRSISMDKWKDIELEKMKVGGNKAAHDFLNAQPDWDDTMTIQ 80 (262)
Q Consensus 1 ~C~DCga~~P~WaSv~~GifiC~~CsgvHR~LGvhiS~VrSitmD~W~~~el~~m~~gGN~~~n~f~e~~~~~~~~~~I~ 80 (262)
+|+|||+++|+|+|++||||||++|+|+||.||+|||+|||++||.|++++|.+|..+||..+|++||+...........
T Consensus 44 ~c~dc~~~~p~w~s~~~g~~~c~~cs~~hr~lg~~is~v~sl~lD~w~~~~l~~~~~~GN~~~n~i~E~~l~~~~~~kP~ 123 (301)
T 2b0o_E 44 QCCDCGAADPTWLSTNLGVLTCIQCSGVHRELGVRFSRMQSLTLDLLGPSELLLALNMGNTSFNEVMEAQLPSHGGPKPS 123 (301)
T ss_dssp BCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCHHHHHHHHHCCHHHHHHHHTTTCCSSSCSCCC
T ss_pred cCCCCCCCCCCeEEeecCeEEcHHHHHHHHhhCCCcccccccCcCCCCHHHHHHHHHcCCHHHHHHHHHhhhhccCCCCC
Confidence 59999999999999999999999999999999999999999999999999999999999999999999853221000000
Q ss_pred hhhccHHHHHHHHHHhcccCCCCcccCC
Q psy62 81 QKYNTKAAALYRDKVSSSYMFNTFTTKG 108 (262)
Q Consensus 81 ~KY~~~aa~~yr~kl~~~~~gr~~~~~~ 108 (262)
.... .....++|.++|..+.|....
T Consensus 124 ~~s~---~~~r~~~I~~Ky~~~~f~~~~ 148 (301)
T 2b0o_E 124 AESD---MGTRRDYIMAKYVEHRFARRC 148 (301)
T ss_dssp TTCC---HHHHHHHHHHHHTSCTTSCCC
T ss_pred Cccc---HHHHHHHHHHHHHhhhhhccc
Confidence 0111 223456778888888876654
No 13
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.93 E-value=2.2e-26 Score=220.57 Aligned_cols=106 Identities=27% Similarity=0.504 Sum_probs=86.2
Q ss_pred CCCCCCCCCCCeeEcccceeEehhhhhhhcCCCCCccceeecccCCCCHHHHHhhhcCChHHHHHHHhhCCCCCCCchhh
Q psy62 1 KCFECNAHNPQWASVTYGIWICLECSGKHRGLGVHLSFVRSISMDKWKDIELEKMKVGGNKAAHDFLNAQPDWDDTMTIQ 80 (262)
Q Consensus 1 ~C~DCga~~P~WaSv~~GifiC~~CsgvHR~LGvhiS~VrSitmD~W~~~el~~m~~gGN~~~n~f~e~~~~~~~~~~I~ 80 (262)
.|+|||+++|+|+|+++|||||++|+|+||.||+|||+||||+||.|+++++++|+.+||..+|++||+...........
T Consensus 25 ~c~dc~~~~p~w~s~~~~~~~c~~c~~~hr~lg~~~s~vrsl~ld~w~~~~~~l~~~~GN~~an~i~E~~lp~~~~~kP~ 104 (497)
T 3lvq_E 25 QCCDCGAADPTWLSTNLGVLTCIQCSGVHRELGVRFSRMQSLTLDLLGPSELLLALNMGNTSFNEVMEAQLPSHGGPKPS 104 (497)
T ss_dssp BCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCGGGGTTTTTCCHHHHHHHHTTTCCSSSCSCCC
T ss_pred cccCCCCCCCCEEEechhHHhHHhhHHHHHhhccccceecccccCCCCHHHHHHHHHHhhHHHHHHHHhhcccccCCCCC
Confidence 59999999999999999999999999999999999999999999999999999999999999999999864321111111
Q ss_pred hhhccHHHHHHHHHHhcccCCCCcccCCC
Q psy62 81 QKYNTKAAALYRDKVSSSYMFNTFTTKGI 109 (262)
Q Consensus 81 ~KY~~~aa~~yr~kl~~~~~gr~~~~~~~ 109 (262)
.... ....+++|.++|+.+.|.....
T Consensus 105 ~~s~---~~~re~fIraky~~~~f~~~~~ 130 (497)
T 3lvq_E 105 AESD---MGTRRDYIMAKYVEHRFARRCT 130 (497)
T ss_dssp TTCC---HHHHHHHHHHHHTTCTTSCCCC
T ss_pred CcCc---HHHHHHHHHHHhhccccccccc
Confidence 0111 2345667888888888876543
No 14
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.92 E-value=3.1e-26 Score=204.88 Aligned_cols=106 Identities=30% Similarity=0.554 Sum_probs=86.7
Q ss_pred CCCCCCCCCCCeeEcccceeEehhhhhhhcCCCCCccceeecccCCCCHHHHHhhhcCChHHHHHHHhhCCCCCCCchhh
Q psy62 1 KCFECNAHNPQWASVTYGIWICLECSGKHRGLGVHLSFVRSISMDKWKDIELEKMKVGGNKAAHDFLNAQPDWDDTMTIQ 80 (262)
Q Consensus 1 ~C~DCga~~P~WaSv~~GifiC~~CsgvHR~LGvhiS~VrSitmD~W~~~el~~m~~gGN~~~n~f~e~~~~~~~~~~I~ 80 (262)
.|+|||+++|+|+|++||||||++|+|+||.||+|||+|||++||.|.++++..|..+||..++++||+....... .+
T Consensus 19 ~c~dc~~~~p~w~s~~~g~~~c~~c~~~hr~lg~~is~v~s~~~d~~~~~~l~~~~~~GN~~~n~i~e~~l~~~~~--~k 96 (278)
T 1dcq_A 19 VCCDCGAPDPTWLSTNLGILTCIECSGIHRELGVHYSRMQSLTLDVLGTSELLLAKNIGNAGFNEIMECCLPSEDP--VK 96 (278)
T ss_dssp BCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCGGGGHHHHHSCHHHHHHHHTTTCCSSSC--CS
T ss_pred cCCCCCCCCCCeEEecCCeEEcHHHHHHHhhcCCCcceeeeeecCCCCHHHHHHHHHcCcHHHHHHHHhhCChhhc--CC
Confidence 5999999999999999999999999999999999999999999999999999999999999999999986432111 11
Q ss_pred hhhccHHHHHHHHHHhcccCCCCcccCCC
Q psy62 81 QKYNTKAAALYRDKVSSSYMFNTFTTKGI 109 (262)
Q Consensus 81 ~KY~~~aa~~yr~kl~~~~~gr~~~~~~~ 109 (262)
..+... .....++|+++|..++|..+..
T Consensus 97 P~~~s~-~~~~~~fI~aKYl~~~f~~~~~ 124 (278)
T 1dcq_A 97 PNPGSD-MIARKDYITAKYMERRYARKKH 124 (278)
T ss_dssp CCTTCC-HHHHHHHHHHHHTTCTTSCCCS
T ss_pred CCCCCC-HHHHHHHHHHHHHHhhcccccc
Confidence 111111 1345778888899888877654
No 15
>1u5k_A Hypothetical protein; OBD-fold, Zn-binding, recombination,replication; 2.00A {Deinococcus radiodurans} SCOP: b.40.4.13 g.45.1.2 PDB: 1w3s_A 2v1c_C
Probab=84.37 E-value=1.3 Score=38.21 Aligned_cols=47 Identities=17% Similarity=0.458 Sum_probs=34.5
Q ss_pred CCCCCCCCCCCeeEcccceeEehhhhhhhcCCCCCccceeecccCCCCHHHHHhhhcCChHHH
Q psy62 1 KCFECNAHNPQWASVTYGIWICLECSGKHRGLGVHLSFVRSISMDKWKDIELEKMKVGGNKAA 63 (262)
Q Consensus 1 ~C~DCga~~P~WaSv~~GifiC~~CsgvHR~LGvhiS~VrSitmD~W~~~el~~m~~gGN~~~ 63 (262)
.|+.||.+...+.++..|.++|..|...+ ..+.+++..|+..-...+
T Consensus 152 ~C~~cg~~~~~~fs~~~Gg~~c~~~~~~~----------------~l~~~~l~~l~~l~~~~~ 198 (244)
T 1u5k_A 152 RCARCGAPDPEHPDPLGGQLLCSKCAALP----------------PYPPAVLDFLRHAVRRTV 198 (244)
T ss_dssp BCTTTCCBSCCEECTTTSSEECTTTCSSC----------------CCCHHHHHHHHHTTTSCH
T ss_pred ccccCCCCCCCcEecccCEEECcccCCCC----------------CCCHHHHHHHHHHHhCCH
Confidence 49999999667889999999999995321 356777777755444333
No 16
>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A
Probab=74.36 E-value=1.5 Score=29.35 Aligned_cols=35 Identities=29% Similarity=0.727 Sum_probs=29.3
Q ss_pred CCCCCCCC-CCCeeEcccceeEehhhhhhhcCCCCC
Q psy62 1 KCFECNAH-NPQWASVTYGIWICLECSGKHRGLGVH 35 (262)
Q Consensus 1 ~C~DCga~-~P~WaSv~~GifiC~~CsgvHR~LGvh 35 (262)
.|.+|++. -|.|-.-..|-.||-.|.-.++..|++
T Consensus 6 ~C~~C~tt~Tp~WR~gp~G~~LCNaCGl~~k~~~~~ 41 (46)
T 1gnf_A 6 ECVNCGATATPLWRRDRTGHYLCNACGLYHKMNGQN 41 (46)
T ss_dssp CCTTTCCCCCSSCBCCTTCCCBCSHHHHHHHHTCSC
T ss_pred CCCCcCCCCCCcCccCCCCCccchHHHHHHHHcCCC
Confidence 59999995 589999999999999998777766654
No 17
>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I*
Probab=72.33 E-value=1.9 Score=28.45 Aligned_cols=34 Identities=26% Similarity=0.543 Sum_probs=28.1
Q ss_pred CCCCCCCC-CCCeeEcccceeEehhhhhhhcCCCC
Q psy62 1 KCFECNAH-NPQWASVTYGIWICLECSGKHRGLGV 34 (262)
Q Consensus 1 ~C~DCga~-~P~WaSv~~GifiC~~CsgvHR~LGv 34 (262)
.|.+|+.. -|+|-.-..|-.+|-.|.-..|.-|+
T Consensus 3 ~C~~C~tt~Tp~WR~gp~G~~LCNaCGl~~k~~~~ 37 (43)
T 2vut_I 3 TCTNCFTQTTPLWRRNPEGQPLCNACGLFLKLHGV 37 (43)
T ss_dssp CCSSSCCCCCSCCEECTTSCEECHHHHHHHHHHSS
T ss_pred cCCccCCCCCCccccCCCCCcccHHHHHHHHHhCC
Confidence 59999985 58999999999999999876665554
No 18
>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A*
Probab=64.56 E-value=3.4 Score=29.70 Aligned_cols=34 Identities=26% Similarity=0.543 Sum_probs=28.5
Q ss_pred CCCCCCCC-CCCeeEcccceeEehhhhhhhcCCCC
Q psy62 1 KCFECNAH-NPQWASVTYGIWICLECSGKHRGLGV 34 (262)
Q Consensus 1 ~C~DCga~-~P~WaSv~~GifiC~~CsgvHR~LGv 34 (262)
.|++|+.. -|+|-.-..|-.||-.|--..+..|+
T Consensus 11 ~C~~C~t~~Tp~WR~gp~G~~LCNaCGl~~~~~~~ 45 (66)
T 4gat_A 11 TCTNCFTQTTPLWRRNPEGQPLCNACGLFLKLHGV 45 (66)
T ss_dssp CCTTTCCCCCSSCEEETTTEEECHHHHHHHHHHCS
T ss_pred CCCCCCCCCCCcCCcCCCCCCccHHHHHHHHHcCC
Confidence 59999985 58999999999999999877665554
No 19
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=63.30 E-value=3.2 Score=32.74 Aligned_cols=35 Identities=29% Similarity=0.718 Sum_probs=28.6
Q ss_pred CCCCCCCC-CCCeeEcccceeEehhhhhhhcCCCCC
Q psy62 1 KCFECNAH-NPQWASVTYGIWICLECSGKHRGLGVH 35 (262)
Q Consensus 1 ~C~DCga~-~P~WaSv~~GifiC~~CsgvHR~LGvh 35 (262)
.|++||+. -|.|-.-..|-+||-.|.-.++..|++
T Consensus 7 ~C~~Cg~~~Tp~WRr~~~g~~lCnaCgl~~Kl~G~n 42 (115)
T 4hc9_A 7 ECVNCGATSTPLWRRDGTGHYLCNACGLYHKMNGQN 42 (115)
T ss_dssp CCTTTCCSCCSSCEECTTSCEECHHHHHHHHHHSSC
T ss_pred CCCCCCCccCCcceECCCCCCcCcchhhhhhhcccc
Confidence 59999985 599999899999999998766654543
No 20
>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A*
Probab=62.14 E-value=2.5 Score=30.21 Aligned_cols=34 Identities=18% Similarity=0.438 Sum_probs=28.4
Q ss_pred CCCCCCCC-CCCeeEcccceeEehhhhhhhcCCCC
Q psy62 1 KCFECNAH-NPQWASVTYGIWICLECSGKHRGLGV 34 (262)
Q Consensus 1 ~C~DCga~-~P~WaSv~~GifiC~~CsgvHR~LGv 34 (262)
.|.+|+.. -|.|=.-..|-.||-.|.-..+..|+
T Consensus 9 ~C~~C~tt~Tp~WR~gp~G~~LCNACGl~~~~~~~ 43 (63)
T 3dfx_A 9 SCANCQTTTTTLWRRNANGDPVCNACGLYYKLHNI 43 (63)
T ss_dssp CCTTTCCSCCSSCCCCTTSCCCCHHHHHHHHHHSS
T ss_pred cCCCcCCCCCCccCCCCCCCchhhHHHHHHHHcCC
Confidence 59999995 58999999999999999876665554
No 21
>2kae_A GATA-type transcription factor; zinc finger, GATA-type, DNA; NMR {Caenorhabditis elegans}
Probab=52.90 E-value=3.1 Score=30.39 Aligned_cols=34 Identities=21% Similarity=0.494 Sum_probs=27.0
Q ss_pred CCCCCCCC-CCCeeE--cccceeEehhhhhhhcCCCCC
Q psy62 1 KCFECNAH-NPQWAS--VTYGIWICLECSGKHRGLGVH 35 (262)
Q Consensus 1 ~C~DCga~-~P~WaS--v~~GifiC~~CsgvHR~LGvh 35 (262)
.|.+|+.. -|+|-. -.-| .||-.|.-.++..|++
T Consensus 10 ~C~nC~tt~Tp~WRrg~~~~g-~LCNACGl~~~~~~~~ 46 (71)
T 2kae_A 10 QCSNCSVTETIRWRNIRSKEG-IQCNACFIYQRKYNKT 46 (71)
T ss_dssp CCSSSCCSCCSSCCCCSSSSC-CCSSHHHHHHHHHHSC
T ss_pred cCCccCCCCCCccccCCCCCC-ccchHHHHHHHHhCCC
Confidence 59999985 589998 6677 7999998777766553
No 22
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=47.84 E-value=8.5 Score=26.57 Aligned_cols=27 Identities=22% Similarity=0.238 Sum_probs=19.0
Q ss_pred CCCCCCCCCCCeeEcccceeEehhhhhh
Q psy62 1 KCFECNAHNPQWASVTYGIWICLECSGK 28 (262)
Q Consensus 1 ~C~DCga~~P~WaSv~~GifiC~~Csgv 28 (262)
+|-+|+.... -....-|..||.+|--|
T Consensus 13 ~Cp~C~~~~l-v~D~~~ge~vC~~CGlV 39 (58)
T 1dl6_A 13 TCPNHPDAIL-VEDYRAGDMICPECGLV 39 (58)
T ss_dssp SBTTBSSSCC-EECSSSCCEECTTTCCE
T ss_pred cCcCCCCCce-eEeCCCCeEEeCCCCCE
Confidence 5999988652 22346689999999444
No 23
>1d4u_A Nucleotide excision repair protein XPA (XPA-MBD); DNA repair, loop-rich domain, relaxation, DNA binding protein; NMR {Homo sapiens} SCOP: a.6.1.2 g.39.1.5 PDB: 1xpa_A
Probab=43.86 E-value=5.1 Score=31.62 Aligned_cols=28 Identities=18% Similarity=0.449 Sum_probs=21.8
Q ss_pred CCCCCCCCCC-CeeEcccceeEehhhhhh
Q psy62 1 KCFECNAHNP-QWASVTYGIWICLECSGK 28 (262)
Q Consensus 1 ~C~DCga~~P-~WaSv~~GifiC~~Csgv 28 (262)
+|.+||..-- .|..-+|++-||..|...
T Consensus 7 ~C~eC~~~~~d~~l~~~F~~~VC~~Cr~~ 35 (111)
T 1d4u_A 7 ICEECGKEFMDSYLMDHFDLPTCDDCRDA 35 (111)
T ss_dssp ECTTTCCEESCSSSTTTTSCCCCTTTCSS
T ss_pred ccccCCChhhHHHHHHhCCeeechhhccc
Confidence 4999998543 344568999999999865
No 24
>1eze_A Cholesteryl ester transferase inhibitor protein; amphipathic helix; NMR {Synthetic} SCOP: j.39.1.1 PDB: 1opp_A
Probab=34.68 E-value=10 Score=24.47 Aligned_cols=17 Identities=29% Similarity=0.519 Sum_probs=15.1
Q ss_pred HHHHHhhhhhhhhcccc
Q psy62 234 QKVTEIGTTVTEKVRDW 250 (262)
Q Consensus 234 ~k~~~~~~~~~~~~~~~ 250 (262)
.|++|+|.+|-||+|+.
T Consensus 9 dkvke~g~tl~eK~k~~ 25 (38)
T 1eze_A 9 DKLKEFGNTLEDKAWEV 25 (38)
T ss_dssp HHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 89999999999999853
No 25
>1ffk_W Ribosomal protein L37AE; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1jj2_Y 1k73_1* 1k8a_1* 1k9m_1* 1kc8_1* 1kd1_1* 1kqs_Y* 1m1k_1* 1m90_1* 1n8r_1* 1nji_1* 1q7y_1* 1q81_1* 1q82_1* 1q86_1* 1qvf_Y 1qvg_Y 1w2b_Y 3cxc_Y*
Probab=33.75 E-value=16 Score=26.64 Aligned_cols=25 Identities=36% Similarity=0.743 Sum_probs=19.2
Q ss_pred CCCCCCCCCCCeeEcccceeEehhhhh
Q psy62 1 KCFECNAHNPQWASVTYGIWICLECSG 27 (262)
Q Consensus 1 ~C~DCga~~P~WaSv~~GifiC~~Csg 27 (262)
.|.-||.....+.. .|||.|..|--
T Consensus 29 ~C~fCgk~~vkR~a--~GIW~C~~C~~ 53 (73)
T 1ffk_W 29 KCPVCGFPKLKRAS--TSIWVCGHCGY 53 (73)
T ss_pred cCCCCCCceeEEEE--eEEEECCCCCc
Confidence 48889977666555 59999999954
No 26
>3c5k_A HD6, histone deacetylase 6; HDAC6, zinc finger, actin-binding, chromatin regulator, cytoplasm, hydrolase, metal-binding, nucleus, phosphoprotein; 1.55A {Homo sapiens} PDB: 3gv4_A 3phd_A
Probab=32.24 E-value=22 Score=27.49 Aligned_cols=23 Identities=17% Similarity=0.504 Sum_probs=17.9
Q ss_pred CCCCCCCCCCCeeEcccceeEeh
Q psy62 1 KCFECNAHNPQWASVTYGIWICL 23 (262)
Q Consensus 1 ~C~DCga~~P~WaSv~~GifiC~ 23 (262)
+|.+|+.....|+++.-|-+-|-
T Consensus 26 ~C~~C~~~~~~W~CL~CG~vgCg 48 (109)
T 3c5k_A 26 PCGDCGTIQENWVCLSCYQVYCG 48 (109)
T ss_dssp CCTTTCCCSSEEEETTTCCEEEC
T ss_pred cCccccCCCCeeeeeecCccccC
Confidence 49999998877887777766663
No 27
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=31.38 E-value=54 Score=23.17 Aligned_cols=39 Identities=18% Similarity=0.230 Sum_probs=27.3
Q ss_pred CCCCHHHHHhhhc----CChHHHHHHHhhCCCCCCC--chhhhhhc
Q psy62 45 DKWKDIELEKMKV----GGNKAAHDFLNAQPDWDDT--MTIQQKYN 84 (262)
Q Consensus 45 D~W~~~el~~m~~----gGN~~~n~f~e~~~~~~~~--~~I~~KY~ 84 (262)
-.|+++|.+.|.. -|+ .+..+...++-...+ ..|++||.
T Consensus 9 ~~WT~EE~~~L~~gV~k~G~-~W~~I~~~y~f~~~RT~VdLKdk~r 53 (62)
T 1x58_A 9 KDFTKEEVNYLFHGVKTMGN-HWNSILWSFPFQKGRRAVDLAHKYH 53 (62)
T ss_dssp SSCCHHHHHHHHHHHHHHCS-CHHHHHHHSCCCTTCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHhH-hHHHHHHhCCCccCcccchHHHHHH
Confidence 4699999998854 588 899998876543333 35666664
No 28
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=30.54 E-value=23 Score=27.76 Aligned_cols=35 Identities=17% Similarity=0.437 Sum_probs=29.1
Q ss_pred CCCCCCCC-CCCeeEcccceeEehhhhhhhcCCCCC
Q psy62 1 KCFECNAH-NPQWASVTYGIWICLECSGKHRGLGVH 35 (262)
Q Consensus 1 ~C~DCga~-~P~WaSv~~GifiC~~CsgvHR~LGvh 35 (262)
.|.+|+.. -|.|-.-..|-.||-.|.-..+..|++
T Consensus 61 ~C~~C~t~~tp~WRr~~~g~~lCNaCgl~~~~~~~~ 96 (115)
T 4hc9_A 61 SCANCQTTTTTLWRRNANGDPVCNACGLYYKLHNIN 96 (115)
T ss_dssp CCTTTCCSCCSSCEECTTSCEECHHHHHHHHHHSSC
T ss_pred cCCCcCCCCcceeEECCCCCCcchHHHHHHHHhCCC
Confidence 59999985 599999999999999998776665554
No 29
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=29.97 E-value=27 Score=31.96 Aligned_cols=28 Identities=25% Similarity=0.516 Sum_probs=20.7
Q ss_pred CCCCCCCCCCCe-eEcccceeEehhhhhh
Q psy62 1 KCFECNAHNPQW-ASVTYGIWICLECSGK 28 (262)
Q Consensus 1 ~C~DCga~~P~W-aSv~~GifiC~~Csgv 28 (262)
+|.+||...|.- ....-|-.||.+|--|
T Consensus 23 ~Cp~C~~~~~~lv~D~~~G~~vC~~CGlV 51 (345)
T 4bbr_M 23 TCPECKVYPPKIVERFSEGDVVCALCGLV 51 (345)
T ss_dssp CCSSCCCSSCCEEEEGGGTEEEETTTCBE
T ss_pred cCCCCCCCCCceeEECCCCcEEeCCCCCC
Confidence 599999854543 3567899999999543
No 30
>3j21_d 50S ribosomal protein L34E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=29.64 E-value=14 Score=27.94 Aligned_cols=26 Identities=19% Similarity=0.475 Sum_probs=17.9
Q ss_pred CCCCCCCCC-------CC----------eeEcccceeEehhhhh
Q psy62 1 KCFECNAHN-------PQ----------WASVTYGIWICLECSG 27 (262)
Q Consensus 1 ~C~DCga~~-------P~----------WaSv~~GifiC~~Csg 27 (262)
+|.|||.+- |. -++=.|| .+|..|--
T Consensus 35 kC~~cg~~L~Gi~~~Rp~~~~rlsK~~KtvsRaYG-~lC~~Cvr 77 (89)
T 3j21_d 35 HCAMCGRPLNGIPRGRPVEMRKLPKTKKRPERPMP-HLCPRCMR 77 (89)
T ss_dssp BCSSSCCBCTTCCCCCTTGGGGSCHHHHCCSSSCT-TSCHHHHH
T ss_pred CCCCCCCccCCccCccHHHHHhcccCCCCcCCCcc-cchHHHHH
Confidence 599998742 21 2456789 99999953
No 31
>3j21_i 50S ribosomal protein L37AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=28.88 E-value=25 Score=26.33 Aligned_cols=24 Identities=29% Similarity=0.891 Sum_probs=18.8
Q ss_pred CCCCCCCCCCCeeEcccceeEehhhh
Q psy62 1 KCFECNAHNPQWASVTYGIWICLECS 26 (262)
Q Consensus 1 ~C~DCga~~P~WaSv~~GifiC~~Cs 26 (262)
.|.-||.....- +..|||-|-.|-
T Consensus 37 ~CpfCGk~~vkR--~a~GIW~C~kCg 60 (83)
T 3j21_i 37 TCPVCGRKAVKR--ISTGIWQCQKCG 60 (83)
T ss_dssp CCSSSCSSCEEE--EETTEEEETTTC
T ss_pred CCCCCCCceeEe--cCcCeEEcCCCC
Confidence 488999886544 457999999994
No 32
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, transcription factor, DNA-binding, DNA-directed RNA polymerase; 4.30A {Saccharomyces cerevisiae}
Probab=28.63 E-value=38 Score=29.05 Aligned_cols=28 Identities=25% Similarity=0.517 Sum_probs=20.7
Q ss_pred CCCCCCCCCCCee-EcccceeEehhhhhh
Q psy62 1 KCFECNAHNPQWA-SVTYGIWICLECSGK 28 (262)
Q Consensus 1 ~C~DCga~~P~Wa-Sv~~GifiC~~Csgv 28 (262)
+|-+|+...+.-+ ...-|-.||.+|--|
T Consensus 23 ~CPECGs~~t~IV~D~erGE~VCsdCGLV 51 (197)
T 3k1f_M 23 TCPECKVYPPKIVERFSEGDVVCALCGLV 51 (197)
T ss_dssp CCTTTCCSSCCEEEEGGGTEEEETTTCBB
T ss_pred ECcCCCCcCCeEEEeCCCCEEEEcCCCCC
Confidence 5999998544433 367899999999544
No 33
>1cit_A NGFI-B, protein (orphan nuclear receptor NGFI-B); early immediate response gene product, transcription factor, monomeric protein-DNA complex; HET: DNA; 2.70A {Rattus norvegicus} SCOP: g.39.1.2
Probab=28.43 E-value=31 Score=25.72 Aligned_cols=27 Identities=26% Similarity=0.764 Sum_probs=21.8
Q ss_pred CCCCCCCCCCCeeEcccceeEehhhhhhhc
Q psy62 1 KCFECNAHNPQWASVTYGIWICLECSGKHR 30 (262)
Q Consensus 1 ~C~DCga~~P~WaSv~~GifiC~~CsgvHR 30 (262)
.|.=||.+.- ...||++.|..|++..|
T Consensus 2 ~C~VCg~~a~---g~hyGv~sC~aCk~FFR 28 (89)
T 1cit_A 2 RCAVCGDNAS---CQHYGVRTCEGCKGFFK 28 (89)
T ss_dssp CCSSSCCCCC---EEETTEEECHHHHHHHH
T ss_pred CCeEeCCCCc---ceEeCccchhhhhhhce
Confidence 4777887543 57899999999999876
No 34
>3izc_m 60S ribosomal protein RPL43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_m 3o58_g 3o5h_g 3u5e_p 3u5i_p 4b6a_p 1s1i_9
Probab=28.23 E-value=30 Score=26.39 Aligned_cols=24 Identities=29% Similarity=0.793 Sum_probs=18.9
Q ss_pred CCCCCCCCCCCeeEcccceeEehhhh
Q psy62 1 KCFECNAHNPQWASVTYGIWICLECS 26 (262)
Q Consensus 1 ~C~DCga~~P~WaSv~~GifiC~~Cs 26 (262)
.|.-||.....-. ..|||-|-.|-
T Consensus 38 ~CpfCgk~~vkR~--a~GIW~C~~C~ 61 (92)
T 3izc_m 38 DCSFCGKKTVKRG--AAGIWTCSCCK 61 (92)
T ss_dssp CCSSSCSSCCEEE--ETTEEECTTTC
T ss_pred cCCCCCCceeeec--ccceEEcCCCC
Confidence 4889998766554 46999999994
No 35
>2han_B Ecdysone receptor; transcription regulation, transcription factor, DNA-binding, nuclear protein, nuclear receptor, zinc finger; 1.95A {Drosophila melanogaster} SCOP: g.39.1.2 PDB: 1r0o_B 1r0n_B
Probab=28.04 E-value=23 Score=27.88 Aligned_cols=27 Identities=26% Similarity=0.679 Sum_probs=21.9
Q ss_pred CCCCCCCCCCCeeEcccceeEehhhhhhhc
Q psy62 1 KCFECNAHNPQWASVTYGIWICLECSGKHR 30 (262)
Q Consensus 1 ~C~DCga~~P~WaSv~~GifiC~~CsgvHR 30 (262)
.|.=||.+. ....||++.|..|++..|
T Consensus 10 ~C~VCg~~a---~g~hyGv~sC~aCk~FFR 36 (119)
T 2han_B 10 LCLVCGDRA---SGYHYNALTCEGCKGFFR 36 (119)
T ss_dssp BCTTTCSBC---CEEETTEEECHHHHHHHH
T ss_pred cCeEeCCcC---CcceECchhHHhhHHhhh
Confidence 377788654 367999999999999876
No 36
>3cc2_Z 50S ribosomal protein L37AE, 50S ribosomal protein L32E; genomic sequnece for R-proteins, ribonucleoprotein, ribosoma protein, RNA-binding; HET: 1MA OMU OMG UR3 PSU; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 3cc4_Z* 3cc7_Z* 3cce_Z* 3ccj_Z* 3ccl_Z* 3ccm_Z* 3ccq_Z* 3ccr_Z* 3ccs_Z* 3ccu_Z* 3ccv_Z* 3cd6_Z* 3cma_Z* 3cme_Z* 3i55_Z* 3i56_Z* 3cpw_Y* 4adx_Z
Probab=28.02 E-value=17 Score=28.97 Aligned_cols=25 Identities=28% Similarity=0.703 Sum_probs=18.0
Q ss_pred CCCCCCCCCCCeeEcccceeEehhhhh
Q psy62 1 KCFECNAHNPQWASVTYGIWICLECSG 27 (262)
Q Consensus 1 ~C~DCga~~P~WaSv~~GifiC~~Csg 27 (262)
.|..||....... ..|||.|..|--
T Consensus 62 tCPfCGk~~vKR~--avGIW~C~~Cgk 86 (116)
T 3cc2_Z 62 ACPNCGEDRVDRQ--GTGIWQCSYCDY 86 (116)
T ss_dssp ECSSSCCEEEEEE--ETTEEEETTTCC
T ss_pred cCCCCCCceeEec--CceeEECCCCCC
Confidence 3889997544333 459999999944
No 37
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=27.39 E-value=12 Score=25.49 Aligned_cols=20 Identities=30% Similarity=0.846 Sum_probs=16.1
Q ss_pred CCCCCCCCCCCeeEcccceeEehhhh
Q psy62 1 KCFECNAHNPQWASVTYGIWICLECS 26 (262)
Q Consensus 1 ~C~DCga~~P~WaSv~~GifiC~~Cs 26 (262)
+|..|++. +..||+-|-.|-
T Consensus 16 iCpkC~a~------~~~gaw~CrKCG 35 (51)
T 3j21_g 16 VCLRCGAT------NPWGAKKCRKCG 35 (51)
T ss_dssp ECTTTCCE------ECTTCSSCSSSS
T ss_pred cCCCCCCc------CCCCceecCCCC
Confidence 48899998 447899999984
No 38
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=27.25 E-value=26 Score=22.87 Aligned_cols=26 Identities=19% Similarity=0.525 Sum_probs=17.5
Q ss_pred CCCCCCCCCCCeeEcccceeEehhhhh
Q psy62 1 KCFECNAHNPQWASVTYGIWICLECSG 27 (262)
Q Consensus 1 ~C~DCga~~P~WaSv~~GifiC~~Csg 27 (262)
+|-+|+...-.+ ...-|-+||..|--
T Consensus 7 ~CP~C~~~~l~~-d~~~gelvC~~CG~ 32 (50)
T 1pft_A 7 VCPACESAELIY-DPERGEIVCAKCGY 32 (50)
T ss_dssp SCTTTSCCCEEE-ETTTTEEEESSSCC
T ss_pred eCcCCCCcceEE-cCCCCeEECcccCC
Confidence 589998843222 33558899999943
No 39
>1dsz_A RAR-alpha, retinoic acid receptor alpha; RAR, nuclear receptor, protein-DNA, transcription/DNA complex; HET: DNA; 1.70A {Homo sapiens} SCOP: g.39.1.2 PDB: 1hra_A
Probab=26.58 E-value=31 Score=25.57 Aligned_cols=27 Identities=33% Similarity=0.859 Sum_probs=21.7
Q ss_pred CCCCCCCCCCCeeEcccceeEehhhhhhhc
Q psy62 1 KCFECNAHNPQWASVTYGIWICLECSGKHR 30 (262)
Q Consensus 1 ~C~DCga~~P~WaSv~~GifiC~~CsgvHR 30 (262)
.|.=||.+.- ...||++.|..|++..|
T Consensus 6 ~C~VCg~~a~---g~hyGv~sC~aCk~FFR 32 (86)
T 1dsz_A 6 PCFVCQDKSS---GYHYGVSACEGCKGFFR 32 (86)
T ss_dssp CCTTTCSCCC---SEETTEECCHHHHHHHH
T ss_pred CCcEECCCcc---ceeeCchhHHHHHHHHH
Confidence 3777887543 46899999999999876
No 40
>1a6y_A Orphan nuclear receptor NR1D1; orphan receptor, DNA-binding, reverb, REV- ERB, transcription regulation, transcription/DNA complex; HET: DNA 5IU; 2.30A {Homo sapiens} SCOP: g.39.1.2 PDB: 1ga5_A* 1hlz_A
Probab=26.50 E-value=26 Score=26.47 Aligned_cols=26 Identities=31% Similarity=0.773 Sum_probs=21.3
Q ss_pred CCCCCCCCCCeeEcccceeEehhhhhhhc
Q psy62 2 CFECNAHNPQWASVTYGIWICLECSGKHR 30 (262)
Q Consensus 2 C~DCga~~P~WaSv~~GifiC~~CsgvHR 30 (262)
|.=||.+. ....||++.|..|++..|
T Consensus 10 C~VCg~~a---~g~hyGv~sC~aCk~FFR 35 (94)
T 1a6y_A 10 CKVCGDVA---SGFHYGVLACEGCKGFFR 35 (94)
T ss_dssp CTTTSSBC---CEEETTEEECHHHHHHHH
T ss_pred CcEeCCCC---cceEeCccchhhhhhehh
Confidence 77788654 357899999999999876
No 41
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=26.25 E-value=24 Score=25.07 Aligned_cols=27 Identities=33% Similarity=0.668 Sum_probs=16.7
Q ss_pred CCCCCCCCCCCeeEcccceeEehhhhhhhcCC
Q psy62 1 KCFECNAHNPQWASVTYGIWICLECSGKHRGL 32 (262)
Q Consensus 1 ~C~DCga~~P~WaSv~~GifiC~~CsgvHR~L 32 (262)
+|.+||+...-= .....-|.+| -||.|
T Consensus 23 ~C~~Cg~~~~l~---~~~~iRC~~C--G~RIL 49 (63)
T 3h0g_L 23 LCADCGARNTIQ---AKEVIRCREC--GHRVM 49 (63)
T ss_dssp BCSSSCCBCCCC---SSSCCCCSSS--CCCCC
T ss_pred ECCCCCCeeecC---CCCceECCCC--CcEEE
Confidence 588888865411 2455678888 34544
No 42
>2han_A Protein ultraspiracle; transcription regulation, transcription factor, DNA-binding, nuclear protein, nuclear receptor, zinc finger; 1.95A {Drosophila melanogaster} SCOP: g.39.1.2
Probab=26.12 E-value=27 Score=26.30 Aligned_cols=26 Identities=27% Similarity=0.802 Sum_probs=21.2
Q ss_pred CCCCCCCCCCeeEcccceeEehhhhhhhc
Q psy62 2 CFECNAHNPQWASVTYGIWICLECSGKHR 30 (262)
Q Consensus 2 C~DCga~~P~WaSv~~GifiC~~CsgvHR 30 (262)
|.=||.+. ....||++.|..|++..|
T Consensus 13 C~VCgd~a---~g~hyGv~sC~aCk~FFR 38 (93)
T 2han_A 13 CSICGDRA---SGKHYGVYSCEGCKGFFK 38 (93)
T ss_dssp CTTTCSBC---CEEETTEEECHHHHHHHH
T ss_pred CcEeCCCC---cCeecCcchhHHHHHHHH
Confidence 77788654 257999999999999876
No 43
>3iz5_m 60S ribosomal protein L43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_m 1ysh_D 2zkr_z
Probab=25.12 E-value=30 Score=26.35 Aligned_cols=24 Identities=29% Similarity=0.736 Sum_probs=18.9
Q ss_pred CCCCCCCCCCCeeEcccceeEehhhh
Q psy62 1 KCFECNAHNPQWASVTYGIWICLECS 26 (262)
Q Consensus 1 ~C~DCga~~P~WaSv~~GifiC~~Cs 26 (262)
.|.-||....... ..|||-|-.|-
T Consensus 38 ~CpfCgk~~vkR~--a~GIW~C~~Cg 61 (92)
T 3iz5_m 38 FCEFCGKFAVKRK--AVGIWGCKDCG 61 (92)
T ss_dssp CCTTTCSSCBEEE--ETTEEECSSSC
T ss_pred cCcccCCCeeEec--CcceEEcCCCC
Confidence 4889998865554 47999999994
No 44
>2uzg_A Ubiquitin carboxyl-terminal hydrolase 33; UBL conjugation pathway, DE-ubiquitination, alternative splicing, metal-binding, thiol protease; NMR {Homo sapiens} SCOP: g.44.1.5
Probab=24.58 E-value=30 Score=26.09 Aligned_cols=23 Identities=26% Similarity=0.748 Sum_probs=16.6
Q ss_pred CCCCCCCCCCC-eeEcc--cceeEeh
Q psy62 1 KCFECNAHNPQ-WASVT--YGIWICL 23 (262)
Q Consensus 1 ~C~DCga~~P~-WaSv~--~GifiC~ 23 (262)
+|.+|++..+. |+++. -|-+-|-
T Consensus 27 ~C~~C~~~~~~lw~CL~~~Cg~vgCg 52 (97)
T 2uzg_A 27 TCQDCKVQGPNLWACLENRCSYVGCG 52 (97)
T ss_dssp CCSSSCCCCSSCEEECCTTCCCEECC
T ss_pred cCcCcCCCCCCceeeecccCCCcccC
Confidence 59999966555 87777 7766663
No 45
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=24.48 E-value=25 Score=26.13 Aligned_cols=26 Identities=31% Similarity=0.703 Sum_probs=18.3
Q ss_pred CCCCCCCCCCCeeEcccceeEehhhhhh
Q psy62 1 KCFECNAHNPQWASVTYGIWICLECSGK 28 (262)
Q Consensus 1 ~C~DCga~~P~WaSv~~GifiC~~Csgv 28 (262)
.|..||+..- -.+.-|||.|..|-..
T Consensus 29 ~Cp~CG~~~v--~r~atGiW~C~~Cg~~ 54 (83)
T 1vq8_Z 29 ACPNCGEDRV--DRQGTGIWQCSYCDYK 54 (83)
T ss_dssp ECSSSCCEEE--EEEETTEEEETTTCCE
T ss_pred cCCCCCCcce--eccCCCeEECCCCCCE
Confidence 4889998432 2345799999999543
No 46
>1ynw_B Retinoic acid receptor RXR-alpha, retinoid X receptor; VDR, nuclear receptor, protein-DNA complex, transcripti complex; 3.00A {Homo sapiens} SCOP: g.39.1.2
Probab=24.35 E-value=25 Score=26.80 Aligned_cols=27 Identities=26% Similarity=0.759 Sum_probs=21.7
Q ss_pred CCCCCCCCCCCeeEcccceeEehhhhhhhc
Q psy62 1 KCFECNAHNPQWASVTYGIWICLECSGKHR 30 (262)
Q Consensus 1 ~C~DCga~~P~WaSv~~GifiC~~CsgvHR 30 (262)
.|.=||.+.- ...||++.|..|++..|
T Consensus 5 ~C~VCg~~a~---g~hyGv~sC~aCk~FFR 31 (99)
T 1ynw_B 5 ICAICGDRSS---GKHYGVYSCEGCKGFFK 31 (99)
T ss_dssp CBTTTBSCCC---BCCTTSCBCSHHHHHHH
T ss_pred CCceeCCCCc---ceeeCccchHHHHHHHH
Confidence 4777886542 56899999999999876
No 47
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=23.83 E-value=26 Score=31.87 Aligned_cols=29 Identities=24% Similarity=0.477 Sum_probs=21.1
Q ss_pred CCCCCCCCCCCe-eEcccceeEehhhhhhh
Q psy62 1 KCFECNAHNPQW-ASVTYGIWICLECSGKH 29 (262)
Q Consensus 1 ~C~DCga~~P~W-aSv~~GifiC~~CsgvH 29 (262)
+|-+||..+|.- ....-|-.||.+|--|.
T Consensus 23 ~Cp~Cg~~~~~iv~D~~~G~~vC~~CG~Vl 52 (345)
T 3k7a_M 23 TCPECKVYPPKIVERFSEGDVVCALCGLVL 52 (345)
T ss_dssp CCSTTCCSCCCCCCCSSSCSCCCSSSCCCC
T ss_pred cCcCCCCCCCceEEECCCCCEecCCCCeEc
Confidence 599999975522 24467899999996654
No 48
>1r4i_A Androgen receptor; AR, steroid receptor, protein-DNA complex, transcription/DNA complex; 3.10A {Rattus norvegicus} SCOP: g.39.1.2
Probab=23.80 E-value=29 Score=26.77 Aligned_cols=26 Identities=23% Similarity=0.654 Sum_probs=21.1
Q ss_pred CCCCCCCCCCeeEcccceeEehhhhhhhc
Q psy62 2 CFECNAHNPQWASVTYGIWICLECSGKHR 30 (262)
Q Consensus 2 C~DCga~~P~WaSv~~GifiC~~CsgvHR 30 (262)
|.=||.+. ....||++.|..|++..|
T Consensus 10 C~VCg~~a---~g~hyGv~sC~aCk~FFR 35 (105)
T 1r4i_A 10 CLICGDEA---SGAHYGALTCGSCKVFFK 35 (105)
T ss_dssp CSSSCSBE---EEEETTEEEEHHHHHHHH
T ss_pred CcEeCCCC---CceEeCCcchhhhhhhhc
Confidence 77788643 367899999999999876
No 49
>1hcq_A Protein (estrogen receptor); protein-DNA complex, complexed with drug, transcription/DNA complex; HET: DNA; 2.40A {Homo sapiens} SCOP: g.39.1.2 PDB: 1hcp_A 4aa6_A
Probab=23.66 E-value=32 Score=25.37 Aligned_cols=26 Identities=31% Similarity=0.885 Sum_probs=21.3
Q ss_pred CCCCCCCCCCeeEcccceeEehhhhhhhc
Q psy62 2 CFECNAHNPQWASVTYGIWICLECSGKHR 30 (262)
Q Consensus 2 C~DCga~~P~WaSv~~GifiC~~CsgvHR 30 (262)
|.=||.+. ....||++.|..|++..|
T Consensus 7 C~VCg~~a---~g~hyGv~sC~aCk~FFR 32 (84)
T 1hcq_A 7 CAVCNDYA---SGYHYGVWSCEGCKAFFK 32 (84)
T ss_dssp CTTTCSBC---CEEETTEEECHHHHHHHH
T ss_pred CcEECCCC---CCeeeCccchHHhhhhhh
Confidence 67788654 367999999999999877
No 50
>2nll_B Protein (thyroid hormone receptor); complex (transcription regulation/DNA), DNA-binding, nuclear protein, zinc- finger, multigene family; HET: DNA 5IU; 1.90A {Homo sapiens} SCOP: g.39.1.2 PDB: 3m9e_A*
Probab=23.29 E-value=23 Score=27.15 Aligned_cols=27 Identities=26% Similarity=0.609 Sum_probs=21.6
Q ss_pred CCCCCCCCCCCeeEcccceeEehhhhhhhc
Q psy62 1 KCFECNAHNPQWASVTYGIWICLECSGKHR 30 (262)
Q Consensus 1 ~C~DCga~~P~WaSv~~GifiC~~CsgvHR 30 (262)
.|.=||.+.. ...||++.|..|++..|
T Consensus 3 ~C~VCgd~a~---g~hyGv~sC~aCk~FFR 29 (103)
T 2nll_B 3 LCVVCGDKAT---GYHYRCITCEGCKGFFR 29 (103)
T ss_dssp BCTTTCSBCC---SEETTEECCHHHHHHHH
T ss_pred CCeEeCCcCc---CeecCcccHHHhhhhhe
Confidence 3777886543 56899999999999876
No 51
>3jyw_9 60S ribosomal protein L43; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=22.99 E-value=26 Score=25.51 Aligned_cols=24 Identities=29% Similarity=0.740 Sum_probs=18.6
Q ss_pred CCCCCCCCCCCeeEcccceeEehhhh
Q psy62 1 KCFECNAHNPQWASVTYGIWICLECS 26 (262)
Q Consensus 1 ~C~DCga~~P~WaSv~~GifiC~~Cs 26 (262)
.|.-||.....- +..|||-|-.|-
T Consensus 28 ~C~fCgk~~vkR--~a~GIW~C~~C~ 51 (72)
T 3jyw_9 28 DCSFCGKKTVKR--GAAGIWTCSCCK 51 (72)
T ss_dssp CCSSCCSSCBSB--CSSSCBCCSSSC
T ss_pred cCCCCCCceeEe--cCCCeEECCCCC
Confidence 488899876555 357999999994
No 52
>1kb2_A Vitamin D3 receptor; VDR, nuclear receptor, protein-DNA complex, transcription/DNA complex; 2.70A {Homo sapiens} SCOP: g.39.1.2 PDB: 1kb4_A 1kb6_A 1ynw_A
Probab=21.75 E-value=27 Score=27.11 Aligned_cols=27 Identities=22% Similarity=0.556 Sum_probs=21.5
Q ss_pred CCCCCCCCCCCeeEcccceeEehhhhhhhc
Q psy62 1 KCFECNAHNPQWASVTYGIWICLECSGKHR 30 (262)
Q Consensus 1 ~C~DCga~~P~WaSv~~GifiC~~CsgvHR 30 (262)
.|.=||.+.- ...||++.|..|++..|
T Consensus 8 ~C~VCg~~a~---g~hyGv~sC~aCk~FFR 34 (110)
T 1kb2_A 8 ICGVCGDRAT---GFHFNAMTCEGCKGFFR 34 (110)
T ss_dssp BCTTTCSBCC---SEETTEECCHHHHHHHH
T ss_pred CCcEeCCCCC---ceEeCchhHhhhhhhhe
Confidence 3777886543 46899999999999877
No 53
>2a66_A Orphan nuclear receptor NR5A2; protein-DNA complex, zinc finger, DNA- binding domain, transcription factor, FTZ-F1, C-terminal extension; 2.20A {Homo sapiens} PDB: 2ff0_A
Probab=21.71 E-value=34 Score=26.70 Aligned_cols=26 Identities=27% Similarity=0.746 Sum_probs=21.1
Q ss_pred CCCCCCCCCCeeEcccceeEehhhhhhhc
Q psy62 2 CFECNAHNPQWASVTYGIWICLECSGKHR 30 (262)
Q Consensus 2 C~DCga~~P~WaSv~~GifiC~~CsgvHR 30 (262)
|.=||.+. ....||++.|..|++..|
T Consensus 12 C~VCgd~a---~G~HyGv~sC~aCk~FFR 37 (113)
T 2a66_A 12 CPVCGDKV---SGYHYGLLTCESCKGFFK 37 (113)
T ss_dssp CTTTCCBE---EEEETTEEEEHHHHHHHH
T ss_pred CcEeCCCC---cceeeCcccHHHHHHHHh
Confidence 77788643 367999999999999876
No 54
>2ebl_A COUP transcription factor 1; DNA-binding, metal-binding, nuclear protein, receptor, transcription regulation, zinc, EAR3, erbal3 tfcoup1; NMR {Homo sapiens}
Probab=21.46 E-value=29 Score=25.94 Aligned_cols=26 Identities=23% Similarity=0.722 Sum_probs=21.1
Q ss_pred CCCCCCCCCCeeEcccceeEehhhhhhhc
Q psy62 2 CFECNAHNPQWASVTYGIWICLECSGKHR 30 (262)
Q Consensus 2 C~DCga~~P~WaSv~~GifiC~~CsgvHR 30 (262)
|.=||.+.. ...||++.|..|++..|
T Consensus 10 C~VCg~~a~---g~hyGv~sC~aCk~FFR 35 (89)
T 2ebl_A 10 CVVCGDKSS---GKHYGQFTCEGCKSFFK 35 (89)
T ss_dssp CTTTCSBCC---SEETTEECCHHHHHHHH
T ss_pred CcEeCCCCc---ceEeCchhhHHhhhhhh
Confidence 777886543 46899999999999876
No 55
>3u5e_g 60S ribosomal protein L34-A, 60S ribosomal protein L33-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_g 4b6a_g 3izc_i 3izs_i
Probab=21.13 E-value=24 Score=28.20 Aligned_cols=26 Identities=31% Similarity=0.558 Sum_probs=17.1
Q ss_pred CCCCCCCCCCC-----------------eeEcccceeEehhhh
Q psy62 1 KCFECNAHNPQ-----------------WASVTYGIWICLECS 26 (262)
Q Consensus 1 ~C~DCga~~P~-----------------WaSv~~GifiC~~Cs 26 (262)
+|.|||.+-+- -++=.||-.+|..|-
T Consensus 43 kCg~Cg~~L~GI~~~RP~e~~rlsK~~KtvsRaYGG~lC~~CV 85 (121)
T 3u5e_g 43 KCGDCGSALQGISTLRPRQYATVSKTHKTVSRAYGGSRCANCV 85 (121)
T ss_dssp BCTTTCCBCTTCCCCCGGGGGSSCGGGSCCSSTTTTTSCSHHH
T ss_pred CCCCCCCccCCccCCcHHHHHhcccCCCCcccCCcccchHHHH
Confidence 59999874211 245567888888883
No 56
>1lo1_A Steroid hormone receptor ERR2; estrogen related receptor 2, DNA binding domain, HERR2, hormone nuclear receptor; NMR {Homo sapiens} SCOP: g.39.1.2
Probab=20.99 E-value=25 Score=26.76 Aligned_cols=26 Identities=23% Similarity=0.680 Sum_probs=20.8
Q ss_pred CCCCCCCCCCeeEcccceeEehhhhhhhc
Q psy62 2 CFECNAHNPQWASVTYGIWICLECSGKHR 30 (262)
Q Consensus 2 C~DCga~~P~WaSv~~GifiC~~CsgvHR 30 (262)
|.=||.+. ....||++.|..|++..|
T Consensus 7 C~VCg~~a---~g~hyGv~sC~aCk~FFR 32 (98)
T 1lo1_A 7 CLVCGDIA---SGYHYGVASCEACKAFFK 32 (98)
T ss_dssp ETTTTEEC---SEESSSSEECHHHHHHHH
T ss_pred CcEeCCCC---cCeeeCccchhhhhhhhe
Confidence 66677654 357899999999999876
No 57
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=20.56 E-value=28 Score=27.71 Aligned_cols=44 Identities=14% Similarity=0.072 Sum_probs=27.0
Q ss_pred cCCCCHHHHHhhh----cCChHHHHHHHhhCC---CCCCCchhhhhhccHH
Q psy62 44 MDKWKDIELEKMK----VGGNKAAHDFLNAQP---DWDDTMTIQQKYNTKA 87 (262)
Q Consensus 44 mD~W~~~el~~m~----~gGN~~~n~f~e~~~---~~~~~~~I~~KY~~~a 87 (262)
-..|+++|.+.|. ..|+.++..+..... ...-...+++||.+..
T Consensus 31 r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnll 81 (122)
T 2roh_A 31 RRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLV 81 (122)
T ss_dssp CCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHH
Confidence 3579999999884 457766776655321 1122346777776443
No 58
>2ida_A Hypothetical protein; zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Rhodopseudomonas palustris} SCOP: g.44.1.5
Probab=20.31 E-value=13 Score=28.69 Aligned_cols=24 Identities=29% Similarity=0.749 Sum_probs=17.2
Q ss_pred CCCCCCCCCCCeeEcccceeEehhhhhh
Q psy62 1 KCFECNAHNPQWASVTYGIWICLECSGK 28 (262)
Q Consensus 1 ~C~DCga~~P~WaSv~~GifiC~~Csgv 28 (262)
+|.||++..-.|+. .+||+.|-.|
T Consensus 20 ~C~~C~~~~~~Wv~----LwlCL~CG~V 43 (102)
T 2ida_A 20 GCEECLKIGSPWVH----LRICRTCGHV 43 (102)
T ss_dssp SCHHHHTTTCCCSC----BEEESSSCCC
T ss_pred cCccccccCCcchh----eeeeeEcCCC
Confidence 58899888766653 6788888443
No 59
>3cbb_A HNF-4-alpha, hepatocyte nuclear factor 4-alpha, DNA binding domain, nuclear; zinc finger; 2.00A {Homo sapiens}
Probab=20.25 E-value=31 Score=25.04 Aligned_cols=27 Identities=30% Similarity=0.611 Sum_probs=21.4
Q ss_pred CCCCCCCCCCCeeEcccceeEehhhhhhhc
Q psy62 1 KCFECNAHNPQWASVTYGIWICLECSGKHR 30 (262)
Q Consensus 1 ~C~DCga~~P~WaSv~~GifiC~~CsgvHR 30 (262)
.|.=||.+.. ...||++.|..|++..|
T Consensus 2 ~C~VCg~~a~---g~hyGv~sC~aCk~FFR 28 (78)
T 3cbb_A 2 LCAICGDRAT---GKHYGASSCDGCKGFFR 28 (78)
T ss_dssp BCTTTSSBCC---SEETTEECCHHHHHHHH
T ss_pred CCeEeCCCCC---ceEeCCcchhhhceeee
Confidence 3777886543 46899999999999876
Done!