RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy62
(262 letters)
>gnl|CDD|216485 pfam01412, ArfGap, Putative GTPase activating protein for Arf.
Putative zinc fingers with GTPase activating proteins
(GAPs) towards the small GTPase, Arf. The GAP of ARD1
stimulates GTPase hydrolysis for ARD1 but not ARFs.
Length = 117
Score = 144 bits (365), Expect = 7e-44
Identities = 44/97 (45%), Positives = 61/97 (62%), Gaps = 3/97 (3%)
Query: 1 KCFECNAHNPQWASVTYGIWICLECSGKHRGLGVHLSFVRSISMDKWKDIELEKMKVGGN 60
C +C A NP WAS+ GI+IC+ CSG HR LGVH+S VRS+++DKW +LE MK GGN
Sbjct: 15 VCADCGAPNPTWASLNLGIFICIRCSGVHRSLGVHISKVRSLTLDKWTPEQLEFMKAGGN 74
Query: 61 KAAHDFLNA---QPDWDDTMTIQQKYNTKAAALYRDK 94
K A++F A P + + ++K + A Y +K
Sbjct: 75 KRANEFWEANLPPPKPPPSSSDREKRESFIRAKYVEK 111
>gnl|CDD|214518 smart00105, ArfGap, Putative GTP-ase activating proteins for the
small GTPase, ARF. Putative zinc fingers with GTPase
activating proteins (GAPs) towards the small GTPase,
Arf. The GAP of ARD1 stimulates GTPase hydrolysis for
ARD1 but not ARFs.
Length = 119
Score = 133 bits (336), Expect = 1e-39
Identities = 44/98 (44%), Positives = 61/98 (62%), Gaps = 4/98 (4%)
Query: 1 KCFECNAHNPQWASVTYGIWICLECSGKHRGLGVHLSFVRSISMDKWKDIELEKMKVGGN 60
KCF+C A NP WASV G+++C+ECSG HR LGVH+S VRS+++D W + EL ++ GGN
Sbjct: 12 KCFDCGAPNPTWASVNLGVFLCIECSGIHRSLGVHISKVRSLTLDTWTEEELRLLQKGGN 71
Query: 61 KAAHDFLNAQPD----WDDTMTIQQKYNTKAAALYRDK 94
+ A+ + D QQKY + AA Y +K
Sbjct: 72 ENANSIWESNLDDFSLKPPDDDDQQKYESFIAAKYEEK 109
>gnl|CDD|227651 COG5347, COG5347, GTPase-activating protein that regulates ARFs
(ADP-ribosylation factors), involved in ARF-mediated
vesicular transport [Intracellular trafficking and
secretion].
Length = 319
Score = 119 bits (299), Expect = 6e-32
Identities = 63/235 (26%), Positives = 100/235 (42%), Gaps = 22/235 (9%)
Query: 1 KCFECNAHNPQWASVTYGIWICLECSGKHRGLGVHLSFVRSISMDKWKDIELEKMKVGGN 60
KC +C A NP WASV G+++C++C+G HR LGVH+S V+S+++D W + EL +M+VGGN
Sbjct: 22 KCADCGAPNPTWASVNLGVFLCIDCAGVHRSLGVHISKVKSLTLDNWTEEELRRMEVGGN 81
Query: 61 KAAHDFLNAQPDWDDTMTIQQKYNTKAAALYRDKVSSSYMFNTFTTKGIFDFSQSGGSTV 120
A+ F + I+ KY++ A Y K Y K I D S +
Sbjct: 82 SNANRFYEKNLLDQLLLPIKAKYDSSVAKKYIRK---KYEL----KKFIDDSSSPSDFSS 134
Query: 121 TSSYQGGG----GGYQSGGGGGMVNSAS---FQSEKEAFFSRKQQENLSRPDHLPPSQGG 173
S+ +SAS + Q S+P L ++
Sbjct: 135 FSASSTRTVDSVDDRLDSESQSRSSSASLGNSNRPDDELNVESFQSTGSKPRSLTSTKSN 194
Query: 174 RYAGFGNSVESPPPRSVSSQELFGGAVSSLTSGWSMFSSSATKLASKATENAIKY 228
+ + + + S+ E + SG S + K ++KATE+
Sbjct: 195 KDNLLNSELLTLNSLLSSNSE--------VGSGTKSRSDAQEKSSTKATESVKPG 241
>gnl|CDD|178661 PLN03114, PLN03114, ADP-ribosylation factor GTPase-activating
protein AGD10; Provisional.
Length = 395
Score = 100 bits (250), Expect = 1e-24
Identities = 47/91 (51%), Positives = 61/91 (67%), Gaps = 1/91 (1%)
Query: 2 CFECNAHNPQWASVTYGIWICLECSGKHRGLGVHLSFVRSISMDKWKDIELEKMKVGGNK 61
CF+CNA NP WASVTYGI++C++CS HR LGVH+SFVRS ++D W +L+ M GGN
Sbjct: 25 CFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWSSEQLKMMIYGGNN 84
Query: 62 AAHDFLNAQPDWDDTMTIQQKYNTKAAALYR 92
A F Q W D + KY ++AA LY+
Sbjct: 85 RAQVFFK-QYGWSDGGKTEAKYTSRAADLYK 114
>gnl|CDD|178666 PLN03119, PLN03119, putative ADP-ribosylation factor
GTPase-activating protein AGD14; Provisional.
Length = 648
Score = 49.5 bits (117), Expect = 8e-07
Identities = 23/65 (35%), Positives = 38/65 (58%), Gaps = 3/65 (4%)
Query: 1 KCFECNAHNPQWASVTYGIWICLECSGKHRGLGVHLSFVRSISMDKWKDIELEKMKVGGN 60
+C CN+ PQ+ T+ ++C+ CSG HR V+S+SM K+ E+E ++ GGN
Sbjct: 25 RCINCNSLGPQYVCTTFWTFVCMACSGIHREF---THRVKSVSMSKFTSKEVEVLQNGGN 81
Query: 61 KAAHD 65
+ A +
Sbjct: 82 QRARE 86
>gnl|CDD|178677 PLN03131, PLN03131, hypothetical protein; Provisional.
Length = 705
Score = 48.2 bits (114), Expect = 2e-06
Identities = 25/74 (33%), Positives = 40/74 (54%), Gaps = 5/74 (6%)
Query: 1 KCFECNAHNPQWASVTYGIWICLECSGKHRGLGVHLSFVRSISMDKWKDIELEKMKVGGN 60
+C CN+ PQ+ + +IC+ CSG HR V+S+SM K+ ++E ++ GGN
Sbjct: 25 RCINCNSLGPQFVCTNFWTFICMTCSGIHREF---THRVKSVSMSKFTSQDVEALQNGGN 81
Query: 61 KAAHDFLNAQPDWD 74
+ A + DWD
Sbjct: 82 QRAREIY--LKDWD 93
>gnl|CDD|219631 pfam07902, Gp58, gp58-like protein. Sequences found in this family
are derived from a number of bacteriophage and prophage
proteins. They are similar to gp58, a minor structural
protein of Lactococcus delbrueckii bacteriophage LL-H.
Length = 601
Score = 34.5 bits (79), Expect = 0.052
Identities = 21/77 (27%), Positives = 31/77 (40%), Gaps = 4/77 (5%)
Query: 65 DFLNAQPDWDDTMTIQQKYNTKAAALYRDKVSSSYMFNTFTTKGIFDFSQSG--GSTVTS 122
D +A+ D++ TI +NT AL R + F F+ G ++ S ST
Sbjct: 461 DLNSAKMDFNSNATIN--FNTNVNALRRIDTGTHTQFIKFSNAGPKGYTGSALYASTGIG 518
Query: 123 SYQGGGGGYQSGGGGGM 139
S G SG G+
Sbjct: 519 SNGDGIESASSGTFAGI 535
>gnl|CDD|236092 PRK07772, PRK07772, single-stranded DNA-binding protein;
Provisional.
Length = 186
Score = 31.9 bits (73), Expect = 0.21
Identities = 18/63 (28%), Positives = 20/63 (31%), Gaps = 3/63 (4%)
Query: 124 YQGGGGGYQSGGGGGMVNSASFQSEKEAFFSRKQQENLSRPDHLPPSQGGRYAGFGNSVE 183
GGGGG+ GGGG S P P S GFG +
Sbjct: 126 GGGGGGGFGGGGGGSGGGGGGGGG---GGAPGGGGAQASAPADDPWSSAPASGGFGGGDD 182
Query: 184 SPP 186
PP
Sbjct: 183 EPP 185
>gnl|CDD|220684 pfam10310, DUF2413, Protein of unknown function (DUF2413). This is
a family of proteins conserved in fungi. The function is
not known.
Length = 436
Score = 30.5 bits (69), Expect = 0.92
Identities = 18/66 (27%), Positives = 27/66 (40%), Gaps = 14/66 (21%)
Query: 181 SVESPPPRSVSS----QELFGGAVSSLTSGWSM---FSSSATKLASKATENAIKYGGMAT 233
+S P + S E ++S+ WS+ +S+AT AS A + A
Sbjct: 97 HPKSKAPSTESEEEEEPEETPDPIASIGGWWSLWGSITSTATSTASAAVK-------QAE 149
Query: 234 QKVTEI 239
Q V EI
Sbjct: 150 QAVNEI 155
>gnl|CDD|218152 pfam04568, IATP, Mitochondrial ATPase inhibitor, IATP. ATP
synthase inhibitor prevents the enzyme from switching to
ATP hydrolysis during collapse of the electrochemical
gradient, for example during oxygen deprivation ATP
synthase inhibitor forms a one to one complex with the
F1 ATPase, possibly by binding at the alpha-beta
interface. It is thought to inhibit ATP synthesis by
preventing the release of ATP. The minimum inhibitory
region for bovine inhibitor is from residues 39 to 72.
The inhibitor has two oligomeric states, dimer (the
active state) and tetramer. At low pH, the inhibitor
forms a dimer via antiparallel coiled coil interactions
between the C terminal regions of two monomers. At high
pH, the inhibitor forms tetramers and higher oligomers
by coiled coil interactions involving the N terminus and
inhibitory region, thus preventing the inhibitory
activity.
Length = 90
Score = 28.5 bits (64), Expect = 1.1
Identities = 14/54 (25%), Positives = 23/54 (42%), Gaps = 4/54 (7%)
Query: 112 FSQSGGSTVTSSYQGGGGGYQSGGGGGMVNSASF----QSEKEAFFSRKQQENL 161
S S G G +G GGG +F +++E +F +K++E L
Sbjct: 15 SVSRSFSAARRSMSEGDTGSGAGRGGGGEAGGAFGKREAAQEEEYFRQKEKEQL 68
>gnl|CDD|181554 PRK08776, PRK08776, cystathionine gamma-synthase; Provisional.
Length = 405
Score = 29.6 bits (66), Expect = 1.8
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 6/53 (11%)
Query: 95 VSSSYMFNTFTTKGIFDFSQSGGST------VTSSYQGGGGGYQSGGGGGMVN 141
+SS++ F+ F K +D+++SG T + +GG GG + G G +N
Sbjct: 37 LSSNFSFDGFGNKRQYDYTRSGNPTRDLLGEALAELEGGAGGVITATGMGAIN 89
>gnl|CDD|152123 pfam11687, DUF3284, Domain of unknown function (DUF3284). This
family of proteins with unknown function appears to be
restricted to Firmicutes.
Length = 120
Score = 28.4 bits (64), Expect = 1.9
Identities = 9/45 (20%), Positives = 15/45 (33%), Gaps = 10/45 (22%)
Query: 77 MTIQQKYNTKAAALYRDKVSSSYMFNTFTTKGIFDFSQSGGSTVT 121
M I + N V + F+ + D Q+ G +T
Sbjct: 1 MKITKTLN----------VPAKDFFDKLIKSALADIKQATGKELT 35
>gnl|CDD|237475 PRK13695, PRK13695, putative NTPase; Provisional.
Length = 174
Score = 28.7 bits (65), Expect = 2.0
Identities = 13/38 (34%), Positives = 18/38 (47%)
Query: 214 ATKLASKATENAIKYGGMATQKVTEIGTTVTEKVRDWD 251
K+A E K GG T++V E G + K+ D D
Sbjct: 17 VLKIAELLKEEGYKVGGFYTEEVREGGKRIGFKIIDLD 54
>gnl|CDD|227270 COG4934, COG4934, Predicted protease [Posttranslational
modification, protein turnover, chaperones].
Length = 1174
Score = 29.0 bits (65), Expect = 2.8
Identities = 22/73 (30%), Positives = 28/73 (38%), Gaps = 4/73 (5%)
Query: 66 FLNAQPDW---DDTMTIQQKYNTKAAALYRDKVSSSYMFNT-FTTKGIFDFSQSGGSTVT 121
A D DDT T N A++ Y V + N FT+ G F + G S+
Sbjct: 361 IFAASGDSGAYDDTPTPYLSVNFPASSPYVTSVGGYPISNAKFTSNGSFTETAWGYSSYG 420
Query: 122 SSYQGGGGGYQSG 134
G GGGY
Sbjct: 421 PGSVGSGGGYSIF 433
>gnl|CDD|221868 pfam12938, M_domain, M domain of GW182.
Length = 238
Score = 28.3 bits (63), Expect = 3.2
Identities = 23/76 (30%), Positives = 26/76 (34%), Gaps = 9/76 (11%)
Query: 126 GGGGGYQSGGGGGMVNSASFQSEKEAFFSRKQQENLSRPDHLPPSQGGRYAGFGNSVESP 185
GGGGG GGGG N AS S S+ + LS PP G G G+ P
Sbjct: 39 GGGGGPGGGGGGNNPNLASLSSLT----SQGLGKILS--GLQPPPLGN---GGGSGAGGP 89
Query: 186 PPRSVSSQELFGGAVS 201
P
Sbjct: 90 GPVGGGGGPGVAPNNI 105
>gnl|CDD|221759 pfam12764, Gly-rich_Ago1, Glycine-rich region of argonaut. This
domain is often found at the very N-terminal of
argonaut-like proteins.
Length = 102
Score = 26.9 bits (59), Expect = 5.0
Identities = 11/30 (36%), Positives = 11/30 (36%)
Query: 121 TSSYQGGGGGYQSGGGGGMVNSASFQSEKE 150
QGG GG G GGG S E
Sbjct: 13 GPPQQGGRGGGGGGRGGGSTGGPPRPSVPE 42
>gnl|CDD|236722 PRK10590, PRK10590, ATP-dependent RNA helicase RhlE; Provisional.
Length = 456
Score = 27.9 bits (62), Expect = 5.9
Identities = 17/68 (25%), Positives = 24/68 (35%), Gaps = 6/68 (8%)
Query: 125 QGGGGGYQSGGGGGMVNSASFQSEKEAFFSRKQQENLSRPDHLPPSQGGRYAGFGNSVES 184
Q GGGG GGG G + E A + ++P P + G G
Sbjct: 393 QRGGGGRGQGGGRGQQQGQPRRGEGGA------KSASAKPAEKPSRRLGDAKPAGEQQRR 446
Query: 185 PPPRSVSS 192
PR ++
Sbjct: 447 RRPRKPAA 454
>gnl|CDD|240386 PTZ00370, PTZ00370, STEVOR; Provisional.
Length = 296
Score = 27.3 bits (61), Expect = 9.5
Identities = 15/60 (25%), Positives = 26/60 (43%), Gaps = 2/60 (3%)
Query: 85 TKAAALYRDKVSSSYMFNTFTTKGIFDFSQSGGSTVTSSYQGGGGGYQSGGGGGMVNSAS 144
KAAA+ ++S + I F+ ++ S+ + GG SG G ++AS
Sbjct: 194 AKAAAI--ALIASFGTSYSKCASSISIFNMLSEESIISALKAGGVTCVSGLAGTAASAAS 251
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.314 0.129 0.391
Gapped
Lambda K H
0.267 0.0714 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 12,612,515
Number of extensions: 1108306
Number of successful extensions: 941
Number of sequences better than 10.0: 1
Number of HSP's gapped: 883
Number of HSP's successfully gapped: 43
Length of query: 262
Length of database: 10,937,602
Length adjustment: 95
Effective length of query: 167
Effective length of database: 6,723,972
Effective search space: 1122903324
Effective search space used: 1122903324
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 58 (26.2 bits)