RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy62
(262 letters)
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation
factor 1; structural genomics consortium, GTPase
activation; HET: GDP; 2.80A {Homo sapiens}
Length = 329
Score = 192 bits (490), Expect = 2e-60
Identities = 69/99 (69%), Positives = 82/99 (82%)
Query: 1 KCFECNAHNPQWASVTYGIWICLECSGKHRGLGVHLSFVRSISMDKWKDIELEKMKVGGN 60
CFEC A NPQW SVTYGIWICLECSG+HRGLGVHLSFVRS++MDKWKDIELEKMK GGN
Sbjct: 39 VCFECGAFNPQWVSVTYGIWICLECSGRHRGLGVHLSFVRSVTMDKWKDIELEKMKAGGN 98
Query: 61 KAAHDFLNAQPDWDDTMTIQQKYNTKAAALYRDKVSSSY 99
+FL +Q D+D ++Q+KYN++AAAL+RDKV +
Sbjct: 99 AKFREFLESQEDYDPCWSLQEKYNSRAAALFRDKVVALA 137
>3dwd_A ADP-ribosylation factor GTPase-activating protein; GAP, structural
genomics consorti ER-golgi transport, golgi apparatus,
GTPase activation; 2.40A {Homo sapiens}
Length = 147
Score = 165 bits (419), Expect = 6e-52
Identities = 69/99 (69%), Positives = 82/99 (82%)
Query: 1 KCFECNAHNPQWASVTYGIWICLECSGKHRGLGVHLSFVRSISMDKWKDIELEKMKVGGN 60
CFEC A NPQW SVTYGIWICLECSG+HRGLGVHLSFVRS++MDKWKDIELEKMK GGN
Sbjct: 40 VCFECGAFNPQWVSVTYGIWICLECSGRHRGLGVHLSFVRSVTMDKWKDIELEKMKAGGN 99
Query: 61 KAAHDFLNAQPDWDDTMTIQQKYNTKAAALYRDKVSSSY 99
+FL +Q D+D ++Q+KYN++AAAL+RDKV +
Sbjct: 100 AKFREFLESQEDYDPCWSLQEKYNSRAAALFRDKVVALA 138
>2owa_A Arfgap-like finger domain containing protein; zinc finger protein,
cysteine-rich motif, GTPase activation; 2.00A
{Cryptosporidium parvum iowa II}
Length = 138
Score = 153 bits (389), Expect = 1e-47
Identities = 33/97 (34%), Positives = 57/97 (58%)
Query: 1 KCFECNAHNPQWASVTYGIWICLECSGKHRGLGVHLSFVRSISMDKWKDIELEKMKVGGN 60
CF+C + NP W S+++ ++ICL CS HR +GVH+SFVRS +DK+ I+L +M +GGN
Sbjct: 38 TCFDCESRNPTWLSLSFAVFICLNCSSDHRKMGVHISFVRSSDLDKFTPIQLVRMDIGGN 97
Query: 61 KAAHDFLNAQPDWDDTMTIQQKYNTKAAALYRDKVSS 97
A ++ + + ++ ++ Y+ + S
Sbjct: 98 GRARNYFKQVLGVNFSPKTKEYASSICGRQYKQILDS 134
>3sub_A ADP-ribosylation factor GTPase-activating protein; protein
trafficking, hydrolase AC; 2.40A {Plasmodium falciparum
3D7}
Length = 163
Score = 152 bits (385), Expect = 1e-46
Identities = 51/154 (33%), Positives = 71/154 (46%), Gaps = 14/154 (9%)
Query: 1 KCFECNAHNPQWASVTYGIWICLECSGKHRGLGVHLSFVRSISMDKWKDIELEKMKVGGN 60
KCF+C NP W SV +GI++C+ CSG HR LGVH+S VRSI MD + D +L+ + GGN
Sbjct: 24 KCFDCGISNPDWVSVNHGIFLCINCSGVHRSLGVHISIVRSIKMDIFTDEQLKYIDKGGN 83
Query: 61 KAAHDFLNAQPDWDDTMTIQQKYNTKAAALYRDKVSSSYMFNTFTTKGIFDFSQSGGSTV 120
K +L D ++KY TKAA YR + S D +S +
Sbjct: 84 KKCQTYLENYGISD--FIPERKYRTKAADHYRKILRSIVHNVDPPAPLPLDEGKSLINYG 141
Query: 121 TSSYQGGGGGYQSGGGGGMVNSASFQSEKEAFFS 154
+ N + +E+ F S
Sbjct: 142 RNENVNEN------------NKNQYSNEEPDFIS 163
>2p57_A GTPase-activating protein ZNF289; zinc finger, GAP, structural
genomics, structural genomics consortium, SGC, metal
binding protein; 1.80A {Homo sapiens}
Length = 144
Score = 142 bits (359), Expect = 6e-43
Identities = 45/96 (46%), Positives = 61/96 (63%), Gaps = 3/96 (3%)
Query: 1 KCFECNAHNPQWASVTYGIWICLECSGKHRGLGVHLSFVRSISMD-KWKDIELEKMKVGG 59
CF+C A NP WAS+TYG+++C++CSG HR LGVHLSF+RS +D W +L M+VGG
Sbjct: 39 ACFDCGAKNPSWASITYGVFLCIDCSGVHRSLGVHLSFIRSTELDSNWNWFQLRCMQVGG 98
Query: 60 NKAAHDFLNAQPDWDDTMTIQQKYNTKAAALYRDKV 95
N A F KYN++AA +YR+K+
Sbjct: 99 NANATAFFRQHG--CTANDANTKYNSRAAQMYREKI 132
>2crw_A ARF GAP 3, ADP-ribosylation factor GTPase-activating protein 3;
arfgap domain, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 149
Score = 141 bits (357), Expect = 1e-42
Identities = 48/98 (48%), Positives = 65/98 (66%), Gaps = 3/98 (3%)
Query: 1 KCFECNAHNPQWASVTYGIWICLECSGKHRGLGVHLSFVRSISMD-KWKDIELEKMKVGG 59
CF+C A NP WAS+TYG+++C++CSG HR LGVHLSF+RS +D W +L M+VGG
Sbjct: 31 VCFDCGAKNPSWASITYGVFLCIDCSGSHRSLGVHLSFIRSTELDSNWSWFQLRCMQVGG 90
Query: 60 NKAAHDFLNAQPDWDDTMTIQQKYNTKAAALYRDKVSS 97
N +A F + T KYN++AA LYR+K+ S
Sbjct: 91 NASASSFFHQHG--CSTNDTNAKYNSRAAQLYREKIKS 126
>2iqj_A Stromal membrane-associated protein 1-like; zinc, structural
genomics, structural genomics consortium, SGC, protein
transport; 1.90A {Homo sapiens}
Length = 134
Score = 122 bits (309), Expect = 1e-35
Identities = 35/103 (33%), Positives = 57/103 (55%), Gaps = 12/103 (11%)
Query: 1 KCFECNAHNPQWASVTYGIWICLECSGKHRGLGVHLSFVRSISMDKWKDIELEKMKVGGN 60
C +C + P+WAS G++IC+ C+G HR LGVH+S V+S+++D+W +++ M+ GN
Sbjct: 29 FCADCQSKGPRWASWNIGVFICIRCAGIHRNLGVHISRVKSVNLDQWTQEQIQCMQEMGN 88
Query: 61 KAAHDFLNA-------QPDWDDTMT--IQQKYNTKAAALYRDK 94
A+ A +P D + I+ KY K Y D+
Sbjct: 89 GKANRLYEAYLPETFRRPQIDPAVEGFIRDKYEKK---KYMDR 128
>2crr_A Stromal membrane-associated protein SMAP1B; arfgap domain, zinc
finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 141
Score = 122 bits (308), Expect = 2e-35
Identities = 37/107 (34%), Positives = 57/107 (53%), Gaps = 12/107 (11%)
Query: 1 KCFECNAHNPQWASVTYGIWICLECSGKHRGLGVHLSFVRSISMDKWKDIELEKMKVGGN 60
C +C A P+WAS G++IC+ C+G HR LGVH+S V+S+++D+W +++ M+ GN
Sbjct: 31 YCADCEAKGPRWASWNIGVFICIRCAGIHRNLGVHISRVKSVNLDQWTAEQIQCMQDMGN 90
Query: 61 KAAHDFLNAQ-------PDWDDTMT--IQQKYNTKAAALYRDKVSSS 98
A A P D + I+ KY K Y DK + +
Sbjct: 91 TKARLLYEANLPENFRRPQTDQAVEFFIRDKYEKK---KYYDKNAIA 134
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats,
metal binding protein; 2.10A {Mus musculus} SCOP:
d.211.1.1 g.45.1.1
Length = 278
Score = 119 bits (300), Expect = 1e-32
Identities = 32/100 (32%), Positives = 46/100 (46%), Gaps = 13/100 (13%)
Query: 1 KCFECNAHNPQWASVTYGIWICLECSGKHRGLGVHLSFVRSISMDKWKDIELEKMKVGGN 60
C +C A +P W S GI C+ECSG HR LGVH S ++S+++D EL K GN
Sbjct: 19 VCCDCGAPDPTWLSTNLGILTCIECSGIHRELGVHYSRMQSLTLDVLGTSELLLAKNIGN 78
Query: 61 KAAHDFLNA--------QPDWDDTMT-----IQQKYNTKA 87
++ + +P+ M I KY +
Sbjct: 79 AGFNEIMECCLPSEDPVKPNPGSDMIARKDYITAKYMERR 118
>2olm_A Nucleoporin-like protein RIP; arfgap, GTPase-activating protein,
REV-interacting protein, human immunodeficiency virus,
AIDS, structural genomics; 1.48A {Homo sapiens} PDB:
2d9l_A
Length = 140
Score = 115 bits (289), Expect = 1e-32
Identities = 30/98 (30%), Positives = 46/98 (46%), Gaps = 13/98 (13%)
Query: 1 KCFECNAHNPQWASVTYGIWICLECSGKHRGLGVHLSFVRSISMDKWKDIELEKMKVGGN 60
KCF+C+ P + ++T G ++C CSG RGL V+SISM + E+E ++ GN
Sbjct: 27 KCFDCDQRGPTYVNMTVGSFVCTSCSGSLRGLNPP-HRVKSISMTTFTQQEIEFLQKHGN 85
Query: 61 KAAHDFLNAQ--------PDWDDTMT----IQQKYNTK 86
+ PD+ D +Q+KY K
Sbjct: 86 EVCKQIWLGLFDDRSSAIPDFRDPQKVKEFLQEKYEKK 123
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium,
SGC, metal binding protein; 2.06A {Homo sapiens}
Length = 301
Score = 115 bits (288), Expect = 9e-31
Identities = 29/100 (29%), Positives = 46/100 (46%), Gaps = 13/100 (13%)
Query: 1 KCFECNAHNPQWASVTYGIWICLECSGKHRGLGVHLSFVRSISMDKWKDIELEKMKVGGN 60
+C +C A +P W S G+ C++CSG HR LGV S ++S+++D EL GN
Sbjct: 44 QCCDCGAADPTWLSTNLGVLTCIQCSGVHRELGVRFSRMQSLTLDLLGPSELLLALNMGN 103
Query: 61 KAAHDFLNA--------QPDWDDTMT-----IQQKYNTKA 87
+ ++ + A +P + M I KY
Sbjct: 104 TSFNEVMEAQLPSHGGPKPSAESDMGTRRDYIMAKYVEHR 143
>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural
genomics consortium, GTPase activation, SGC, binding,
nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens}
PDB: 3feh_A* 3fm8_C 3mdb_C*
Length = 386
Score = 115 bits (290), Expect = 2e-30
Identities = 33/99 (33%), Positives = 51/99 (51%), Gaps = 13/99 (13%)
Query: 1 KCFECNAHNPQWASVTYGIWICLECSGKHRGLGVHLSFVRSISMDKWKDIELEKMKVGGN 60
+C +C A +P WAS T G++ICL CSG HR + +S V+S+ +D W++ ++E M GN
Sbjct: 36 RCADCGAPDPDWASYTLGVFICLSCSGIHRNIP-QVSKVKSVRLDAWEEAQVEFMASHGN 94
Query: 61 KAAHDFLNAQ-------PDWDDTMT-----IQQKYNTKA 87
AA ++ P D I+ KY +
Sbjct: 95 DAARARFESKVPSFYYRPTPSDCQLLREQWIRAKYERQE 133
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing
protein 1; arfgap domain, zinc-binding module, GTPase
activ metal-binding, nitration; 2.30A {Homo sapiens}
Length = 368
Score = 111 bits (278), Expect = 8e-29
Identities = 32/100 (32%), Positives = 49/100 (49%), Gaps = 13/100 (13%)
Query: 1 KCFECNAHNPQWASVTYGIWICLECSGKHRGLGVHLSFVRSISMDKWKDIELEKMKVGGN 60
+C +C P+WAS+ G+ +C++CSG HR LGVH S VRS+++D W+ ++ M GN
Sbjct: 47 QCCDCREPAPEWASINLGVTLCIQCSGIHRSLGVHFSKVRSLTLDSWEPELVKLMCELGN 106
Query: 61 KAAHDFLNAQ--------PDWDDTMT-----IQQKYNTKA 87
+ A+ P + I KY K
Sbjct: 107 VIINQIYEARVEAMAVKKPGPSCSRQEKEAWIHAKYVEKK 146
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing
protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1,
linkers, alternat splicing; HET: GDP; 3.38A {Homo
sapiens} PDB: 3lvr_E*
Length = 497
Score = 106 bits (265), Expect = 2e-26
Identities = 30/100 (30%), Positives = 46/100 (46%), Gaps = 13/100 (13%)
Query: 1 KCFECNAHNPQWASVTYGIWICLECSGKHRGLGVHLSFVRSISMDKWKDIELEKMKVGGN 60
+C +C A +P W S G+ C++CSG HR LGV S ++S+++D EL GN
Sbjct: 25 QCCDCGAADPTWLSTNLGVLTCIQCSGVHRELGVRFSRMQSLTLDLLGPSELLLALNMGN 84
Query: 61 KAAHDFLNAQ--------PDWDDTMT-----IQQKYNTKA 87
+ ++ + AQ P + M I KY
Sbjct: 85 TSFNEVMEAQLPSHGGPKPSAESDMGTRRDYIMAKYVEHR 124
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 32.6 bits (73), Expect = 0.051
Identities = 10/27 (37%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
Query: 199 AVSSLTSGWSMFS-SSATKLASKAT-E 223
A+ L + +++ SA LA KAT E
Sbjct: 21 ALKKLQASLKLYADDSAPALAIKATME 47
>1u5k_A Hypothetical protein; OBD-fold, Zn-binding,
recombination,replication; 2.00A {Deinococcus
radiodurans} SCOP: b.40.4.13 g.45.1.2 PDB: 1w3s_A 2v1c_C
Length = 244
Score = 31.0 bits (70), Expect = 0.34
Identities = 12/68 (17%), Positives = 21/68 (30%)
Query: 2 CFECNAHNPQWASVTYGIWICLECSGKHRGLGVHLSFVRSISMDKWKDIELEKMKVGGNK 61
C C A +P+ G +C +C+ L F+R + + +
Sbjct: 153 CARCGAPDPEHPDPLGGQLLCSKCAALPPYPPAVLDFLRHAVRRTVRASFEQPVPSADRP 212
Query: 62 AAHDFLNA 69
A L
Sbjct: 213 ALWRALEK 220
>2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl
reductase, ketoacyl synthase, ketoacyl reductase; 3.1A
{Thermomyces lanuginosus} PDB: 2uvb_A*
Length = 1878
Score = 30.3 bits (68), Expect = 0.72
Identities = 10/46 (21%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Query: 120 VTSSYQGGGGGYQSGGGGGMVNSASFQ--SEKEAFFSRKQQENLSR 163
+T S GG + GG +++ A+ ++ + ++Q E ++R
Sbjct: 300 ITLSSPSSGGDGGAAGGAMLMDPAAIDALTKDQRALFKQQLEIIAR 345
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 29.2 bits (65), Expect = 1.1
Identities = 7/29 (24%), Positives = 11/29 (37%), Gaps = 7/29 (24%)
Query: 1 KCFECNAHNPQWASVTY----GIWICLEC 25
C EC + P+ + G +C C
Sbjct: 23 TCPECKVYPPK---IVERFSEGDVVCALC 48
>2de3_A Dibenzothiophene desulfurization enzyme B; alpha-beta, hydrolase;
HET: OBP; 1.60A {Rhodococcus SP} PDB: 2de4_A* 2de2_A
Length = 365
Score = 28.7 bits (63), Expect = 2.0
Identities = 15/107 (14%), Positives = 28/107 (26%), Gaps = 6/107 (5%)
Query: 29 HRGLGVHLSFVRSISMD--KWKDIELEKMKVGGNKAAHDFLNAQPDWDDTMTIQQKYNTK 86
G + + ++ D+EL + G + L +
Sbjct: 151 ALGSWEARALLHTLEHGELGVDDVELVPISSPGVDVPAEQLEESATVKGADLFPDVARGQ 210
Query: 87 AAALYRDKVSSSYMFNTFTTKGIFDFSQSGGSTVTSSYQGGGGGYQS 133
AA L V + Y + + + +G V Y S
Sbjct: 211 AAVLASGDVDALYSWLPWAGELQ----ATGARPVVDLGLDERNAYAS 253
>2gki_A Nuclease; anti-DNA antibody, catalytic antibody, immune system;
2.88A {Mus musculus}
Length = 291
Score = 28.5 bits (64), Expect = 2.3
Identities = 12/22 (54%), Positives = 14/22 (63%)
Query: 119 TVTSSYQGGGGGYQSGGGGGMV 140
TV+S GG GG SGGGG +
Sbjct: 139 TVSSRGGGGSGGGGSGGGGSDL 160
Score = 28.1 bits (63), Expect = 3.0
Identities = 13/23 (56%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Query: 117 GSTVT-SSYQGGGGGYQSGGGGG 138
G++VT SS GGG G GGGG
Sbjct: 135 GTSVTVSSRGGGGSGGGGSGGGG 157
>2ghw_B Anti-SARS SCFV antibody, 80R; S protein, neutralizing antibody,
virus/viral protein/antibiotic complex; 2.30A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.1
Length = 247
Score = 28.0 bits (63), Expect = 3.0
Identities = 14/23 (60%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Query: 117 GSTVT-SSYQGGGGGYQSGGGGG 138
G+ VT SS GG GG SGGGG
Sbjct: 112 GTLVTVSSGGGGSGGGGSGGGGS 134
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 28.3 bits (63), Expect = 3.1
Identities = 8/43 (18%), Positives = 15/43 (34%), Gaps = 7/43 (16%)
Query: 128 GGGYQSGGGGGMVNSASFQSEKEAFFSRKQQENLSRPDHLPPS 170
G G GG+ ++ + + F + + D L S
Sbjct: 1044 VGNCSGSGMGGV---SALRGMFKDRFKDEP----VQNDILQES 1079
>2uzg_A Ubiquitin carboxyl-terminal hydrolase 33; UBL conjugation
pathway, DE-ubiquitination, alternative splicing,
metal-binding, thiol protease; NMR {Homo sapiens} SCOP:
g.44.1.5
Length = 97
Score = 26.5 bits (58), Expect = 3.7
Identities = 9/33 (27%), Positives = 12/33 (36%), Gaps = 7/33 (21%)
Query: 1 KCFECNAHNPQWASVTYGIWICLECSGKHRGLG 33
C +C P +W CLE + G G
Sbjct: 27 TCQDCKVQGPN-------LWACLENRCSYVGCG 52
>3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase,
hydrolase, phosphoprotein, protease; 3.14A {Drosophila
melanogaster}
Length = 1354
Score = 27.5 bits (60), Expect = 5.6
Identities = 7/64 (10%), Positives = 15/64 (23%), Gaps = 14/64 (21%)
Query: 87 AAALYRDKVSSSYMFNTFTTKGIFDFSQSG--------------GSTVTSSYQGGGGGYQ 132
A + + + Y ++ ++ G + S Q Q
Sbjct: 397 GAYVSPQMMEAEYAMREKLPGNVYTWTSRDPCIDGGQGVTVCAPGGAIASVPQFTMSKSQ 456
Query: 133 SGGG 136
G
Sbjct: 457 LMNG 460
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 27.5 bits (60), Expect = 6.0
Identities = 6/51 (11%), Positives = 16/51 (31%), Gaps = 10/51 (19%)
Query: 45 DKWKDIELEKMKVGGNKAAHDFLNAQPDWDDTMTIQQKYNTKAAALYRDKV 95
D WK + +K+ LN + ++ + +++
Sbjct: 345 DNWKHVNCDKL----TTIIESSLNVL----EPAEYRKMF--DRLSVFPPSA 385
>3fku_X Neutralizing antibody F10; influenza, hemagglutinin, SCFV, F
membrane, envelope protein, fusion protein, membrane,
trans virion; HET: NAG BMA; 3.20A {Homo sapiens}
Length = 280
Score = 26.9 bits (60), Expect = 6.6
Identities = 12/22 (54%), Positives = 13/22 (59%)
Query: 117 GSTVTSSYQGGGGGYQSGGGGG 138
G+ VT S GGG G GGGG
Sbjct: 117 GTLVTVSSGGGGSGGGGSGGGG 138
>3ov2_A Curcumin synthase; type III polyketide synthase, transferase; 2.32A
{Curcuma longa} PDB: 3ov3_A
Length = 393
Score = 27.1 bits (60), Expect = 7.2
Identities = 9/37 (24%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 209 MFSSSATKLASKATENAIKYGGMATQKVTE-IGTTVT 244
+ +LA +A E AIK G ++T + +++
Sbjct: 97 IVVEEIPRLAKEAAEKAIKEWGRPKSEITHLVFCSIS 133
>1u0m_A Putative polyketide synthase; type III polyketide synthase, PKS,
bacterial, thiolase fold, beta-alpha-beta-alpha fold,
catalytic triad; HET: 15P; 2.22A {Streptomyces
coelicolor} SCOP: c.95.1.2 c.95.1.2
Length = 382
Score = 26.9 bits (60), Expect = 7.6
Identities = 4/37 (10%), Positives = 11/37 (29%), Gaps = 1/37 (2%)
Query: 209 MFSSSATKLASKATENAIKYGGMATQKVTE-IGTTVT 244
++ A + A+ + + I + T
Sbjct: 79 VYEREAKSRVPAVIQRALDDAELLATDIDVIIYVSCT 115
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.314 0.129 0.391
Gapped
Lambda K H
0.267 0.0724 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,870,541
Number of extensions: 211917
Number of successful extensions: 470
Number of sequences better than 10.0: 1
Number of HSP's gapped: 451
Number of HSP's successfully gapped: 45
Length of query: 262
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 170
Effective length of database: 4,133,061
Effective search space: 702620370
Effective search space used: 702620370
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 56 (25.4 bits)