RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy62
         (262 letters)



>d1dcqa2 g.45.1.1 (A:247-368) Pyk2-associated protein beta ARF-GAP
           domain {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 122

 Score =  104 bits (261), Expect = 5e-29
 Identities = 34/108 (31%), Positives = 52/108 (48%), Gaps = 5/108 (4%)

Query: 1   KCFECNAHNPQWASVTYGIWICLECSGKHRGLGVHLSFVRSISMDKWKDIELEKMKVGGN 60
            C +C A +P W S   GI  C+ECSG HR LGVH S ++S+++D     EL   K  GN
Sbjct: 17  VCCDCGAPDPTWLSTNLGILTCIECSGIHRELGVHYSRMQSLTLDVLGTSELLLAKNIGN 76

Query: 61  KAAHDFLNAQPDWDDTMTIQQKYNTKAAALYRDK-VSSSYMFNTFTTK 107
              ++ +      +D      K N  +  + R   +++ YM   +  K
Sbjct: 77  AGFNEIMECCLPSED----PVKPNPGSDMIARKDYITAKYMERRYARK 120


>d1u5ka2 g.45.1.2 (A:81-237) Recombinational repair protein RecO,
           C-terminal domain {Deinococcus radiodurans [TaxId:
           1299]}
          Length = 157

 Score = 29.7 bits (66), Expect = 0.19
 Identities = 12/68 (17%), Positives = 21/68 (30%)

Query: 2   CFECNAHNPQWASVTYGIWICLECSGKHRGLGVHLSFVRSISMDKWKDIELEKMKVGGNK 61
           C  C A +P+      G  +C +C+         L F+R       +    + +      
Sbjct: 73  CARCGAPDPEHPDPLGGQLLCSKCAALPPYPPAVLDFLRHAVRRTVRASFEQPVPSADRP 132

Query: 62  AAHDFLNA 69
           A    L  
Sbjct: 133 ALWRALEK 140


>d1uzea_ d.92.1.5 (A:) Angiotensin converting enzyme, ACE {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 579

 Score = 27.1 bits (59), Expect = 2.8
 Identities = 4/26 (15%), Positives = 15/26 (57%)

Query: 81  QKYNTKAAALYRDKVSSSYMFNTFTT 106
           ++Y+  +  ++ +   +++ +NT  T
Sbjct: 10  EEYDRTSQVVWNEYAEANWNYNTNIT 35


>d1wema_ g.50.1.2 (A:) Death associated transcription factor 1,
          Datf1 (DIO-1) {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 76

 Score = 24.7 bits (53), Expect = 5.0
 Identities = 4/29 (13%), Positives = 8/29 (27%)

Query: 1  KCFECNAHNPQWASVTYGIWICLECSGKH 29
           C   +    +        +IC  C+   
Sbjct: 43 DCVGISEARGRLLERNGEDYICPNCTILS 71


>d1rq2a1 c.32.1.1 (A:8-205) Cell-division protein FtsZ
           {Mycobacterium tuberculosis [TaxId: 1773]}
          Length = 198

 Score = 25.6 bits (56), Expect = 5.5
 Identities = 14/63 (22%), Positives = 22/63 (34%), Gaps = 9/63 (14%)

Query: 52  LEKMKV-----GGNKAAHDFLNAQPDWDDTMTIQQKYNTKAAALYRDKVSSSYMFNTFTT 106
           L  +KV     GG  A +  +       + + I    NT A AL              +T
Sbjct: 1   LAVIKVVGIGGGGVNAVNRMIEQGLKGVEFIAI----NTDAQALLMSDADVKLDVGRDST 56

Query: 107 KGI 109
           +G+
Sbjct: 57  RGL 59


>d2g45a1 g.44.1.5 (A:173-285) Ubiquitin carboxyl-terminal
          hydrolase 5, UBP5 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 113

 Score = 24.9 bits (54), Expect = 5.8
 Identities = 5/25 (20%), Positives = 9/25 (36%), Gaps = 8/25 (32%)

Query: 1  KCFECNAHNPQWASVTYGIWICLEC 25
          KC +C+            +W+ L  
Sbjct: 26 KCSKCDMRE--------NLWLNLTD 42


>d2ajfa1 d.92.1.5 (A:19-615) Angiotensin converting enzyme 2, ACE2
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 597

 Score = 25.5 bits (55), Expect = 9.0
 Identities = 8/26 (30%), Positives = 14/26 (53%)

Query: 81  QKYNTKAAALYRDKVSSSYMFNTFTT 106
            K+N +A  L+     +S+ +NT  T
Sbjct: 12  DKFNHEAEDLFYQSSLASWNYNTNIT 37


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.314    0.129    0.391 

Gapped
Lambda     K      H
   0.267   0.0521    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 956,132
Number of extensions: 40746
Number of successful extensions: 66
Number of sequences better than 10.0: 1
Number of HSP's gapped: 65
Number of HSP's successfully gapped: 10
Length of query: 262
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 178
Effective length of database: 1,254,276
Effective search space: 223261128
Effective search space used: 223261128
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 52 (24.3 bits)