BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy620
(1290 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2RHP|A Chain A, The Thrombospondin-1 Polymorphism Asn700ser Associated With
Cornoary Artery Disease Causes Local And Long-Ranging
Changes In Protein Structure
Length = 622
Score = 372 bits (954), Expect = e-102, Method: Compositional matrix adjust.
Identities = 247/577 (42%), Positives = 321/577 (55%), Gaps = 79/577 (13%)
Query: 594 NPCFPGVECRDTREGP-RCMRCPDGYVGDGIHCKPGVTCNMRP--CFQGVQ---CFDT-- 645
NPCFPG +C +G C CP G++G+G HC+ C + P CF + C +T
Sbjct: 6 NPCFPGAQCSSFPDGSWSCGFCPVGFLGNGTHCEDLDECALVPDICFSTSKVPRCVNTQP 65
Query: 646 ---VFNASIRLKVTHVVLVRLDTQEMVRDV----NALVDVRATRALKASVRCDDIPEH-- 696
R + V V L+ + + V N D T C +
Sbjct: 66 GFHCLPCPPRYRGNQPVGVGLEAAKTEKQVCEPENPCKD--KTHNCHKHAECIYLGHFSD 123
Query: 697 PYYRCGSCPEGTTGNGTRC---HDID------------------EDNCVHIPNSGQEXXX 735
P Y+C C G G+G C D+D +DNC H+PNSGQE
Sbjct: 124 PMYKC-ECQTGYAGDGLICGEDSDLDGWPSLNLVCATNATYHCIKDNCPHLPNSGQEDFD 182
Query: 736 XXXXXXXXXXXXXXXXILNPSDNCPYVHNPDQLDSDQDGMRDRRLGDACDNCPTDNCPYV 795
+ + DNC + NP Q D D+D +GD CDNCP YV
Sbjct: 183 KDGIGDACDDDDDNDGVTDEKDNCQLLFNPRQADYDKD-----EVGDRCDNCP-----YV 232
Query: 796 HNPDQLDSDQDGMRDRRLGDACDNCPTVPXXXXXXXXXXXXXXXXXXXMDNDGINNHADN 855
HNP Q+D+D +G GDAC +D D + N DN
Sbjct: 233 HNPAQIDTDNNGE-----GDAC-----------------------SVDIDGDDVFNERDN 264
Query: 856 CPRNANPDQRDSDHDGIGDACDNCPRVSNPEQTDSNSNHIGDVCDSGVDTDHDGVPDPMD 915
CP N DQRD+D DG+GD CDNCP V NP+QTD +++ +GD CD+ D D DG + D
Sbjct: 265 CPYVYNTDQRDTDGDGVGDHCDNCPLVHNPDQTDVDNDLVGDQCDNNEDIDDDGHQNNQD 324
Query: 916 NCPKVANPNQLDNDRDGKGDECDPDLDGDGISNDEDNCRLIYNPNQDDSDGDGVGNVCDK 975
NCP ++N NQ D+DRDG+GD CDPD D DG+ +D DNCRL++NP+Q+D DGDG G++C
Sbjct: 325 NCPYISNANQADHDRDGQGDACDPDDDNDGVPDDRDNCRLVFNPDQEDLDGDGRGDICKD 384
Query: 976 DFDKDGTPDVSDVCPNNSLVYRTDFRRYTTVILDPQGTSQIDPHWVIYNHGAEILQTMNS 1035
DFD D PD+ DVCP N+ + TDFR + V LDP+GT+QIDP+WVI + G E++QT NS
Sbjct: 385 DFDNDNIPDIDDVCPENNAISETDFRNFQMVPLDPKGTTQIDPNWVIRHQGKELVQTANS 444
Query: 1036 DPGLAIGQDKFSGVDFEGTFFVDTDIDDDYAGFVFSYQSSQKFYVMMWKKNSQVYWQTTP 1095
DPG+A+G D+F VDF GTF+V+TD DDDYAGFVF YQSS +FYV+MWK+ +Q YW+ P
Sbjct: 445 DPGIAVGFDEFGSVDFSGTFYVNTDRDDDYAGFVFGYQSSSRFYVVMWKQVTQTYWEDQP 504
Query: 1096 FRAVAEPGIQLKVVDSATGPGTMLRNSLWHTGDTENQ 1132
RA G+ LKVV+S TG G LRN+LWHTG+T Q
Sbjct: 505 TRAYGYSGVSLKVVNSTTGTGEHLRNALWHTGNTPGQ 541
Score = 149 bits (376), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 124/363 (34%), Positives = 160/363 (44%), Gaps = 95/363 (26%)
Query: 241 LAEPCDPRVQCTNLFPG-YRCDPCPAGFTGSTGVQGVGLEHAVRFRQTCVDIDECADGRN 299
L+ PC P QC++ G + C CP GF G+ C D+DECA +
Sbjct: 4 LSNPCFPGAQCSSFPDGSWSCGFCPVGFLGNG--------------THCEDLDECALVPD 49
Query: 300 GGCDSNSM---CTNTEGSFTCTSLCRNSYMVRNVSVGCQSQNFGADVC------PDGTR- 349
C S S C NT+ F C + V VG ++ VC D T
Sbjct: 50 I-CFSTSKVPRCVNTQPGFHCLPCPPRYRGNQPVGVGLEAAKTEKQVCEPENPCKDKTHN 108
Query: 350 CDRNAKCTRILGNH----YACKCDNGWAGDGQFCGRDTDLDGWPDYDLACPDR---KCRK 402
C ++A+C LG+ Y C+C G+AGDG CG D+DLDGWP +L C C K
Sbjct: 109 CHKHAECI-YLGHFSDPMYKCECQTGYAGDGLICGEDSDLDGWPSLNLVCATNATYHCIK 167
Query: 403 DNCVHIPNSG--------------------------------------------INNHAD 418
DNC H+PNSG + + D
Sbjct: 168 DNCPHLPNSGQEDFDKDGIGDACDDDDDNDGVTDEKDNCQLLFNPRQADYDKDEVGDRCD 227
Query: 419 NCPRNANPDQ---------RMCGHSLRIHIVFCLTVLGINNHADNCPRNANPDQRDSDHD 469
NCP NP Q C + VF N DNCP N DQRD+D D
Sbjct: 228 NCPYVHNPAQIDTDNNGEGDACSVDIDGDDVF--------NERDNCPYVYNTDQRDTDGD 279
Query: 470 GIGDACDNCPRVSNPEQTDSNSNHIGDVCDSGVDTDHDGVPDPMDNCPKVANPNQLDNDR 529
G+GD CDNCP V NP+QTD +++ +GD CD+ D D DG + DNCP ++N NQ D+DR
Sbjct: 280 GVGDHCDNCPLVHNPDQTDVDNDLVGDQCDNNEDIDDDGHQNNQDNCPYISNANQADHDR 339
Query: 530 DGK 532
DG+
Sbjct: 340 DGQ 342
Score = 77.0 bits (188), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 32/55 (58%), Positives = 40/55 (72%)
Query: 1236 YQSSQKFYVMMWKKNSQVYWQTTPFRAVAEPGIQLKVVDSATGPGTMLRNSLWHT 1290
YQSS +FYV+MWK+ +Q YW+ P RA G+ LKVV+S TG G LRN+LWHT
Sbjct: 481 YQSSSRFYVVMWKQVTQTYWEDQPTRAYGYSGVSLKVVNSTTGTGEHLRNALWHT 535
Score = 75.5 bits (184), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 116/428 (27%), Positives = 159/428 (37%), Gaps = 92/428 (21%)
Query: 112 NPCFPGVECRDTREGP-RCMRCPDGYVGDGIHCKPGVTCNMRP--CFQGVQ---CFDTVE 165
NPCFPG +C +G C CP G++G+G HC+ C + P CF + C +T
Sbjct: 6 NPCFPGAQCSSFPDGSWSCGFCPVGFLGNGTHCEDLDECALVPDICFSTSKVPRCVNTQP 65
Query: 166 GYTCGPCPSGYTGDGERCQRIGGCSRNPCAQGKLNEKTRCVRCDDIPEHPYYRCGSCPEG 225
G+ C PCP Y G+ P G KT C+ PE+P C +
Sbjct: 66 GFHCLPCPPRYRGN------------QPVGVGLEAAKTEKQVCE--PENP------CKDK 105
Query: 226 TTGNGTRCHDIDEC-DLAEPCDPRVQCTNLFPGYRCDPCPAGFTGSTGVQG--------- 275
T CH EC L DP +C C G+ G + G
Sbjct: 106 T----HNCHKHAECIYLGHFSDPMYKCE----------CQTGYAGDGLICGEDSDLDGWP 151
Query: 276 -VGLEHAVRFRQTCVDIDECADGRNGGCDSNSMCTNTEGSFTCTSLCRNSYMVRNVSVGC 334
+ L A C+ D C N G + + + N +
Sbjct: 152 SLNLVCATNATYHCIK-DNCPHLPNSGQEDFDKDGIGDACDDDDDNDGVTDEKDNCQLLF 210
Query: 335 QSQNFGADVCPDGTRCDRNAKCTRILGNHYACKCDNGWAGDGQFCGRDTDLDGWPDYDLA 394
+ D G RCD C + H + D G+G C D D D
Sbjct: 211 NPRQADYDKDEVGDRCD---NCPYV---HNPAQIDTDNNGEGDACSVDIDGD-------- 256
Query: 395 CPDRKCRKDNCVHIPNS--------GINNHADNCPRNANPDQRMCGHSL---RIHIVFCL 443
D +DNC ++ N+ G+ +H DNCP NPDQ + L + +
Sbjct: 257 --DVFNERDNCPYVYNTDQRDTDGDGVGDHCDNCPLVHNPDQTDVDNDLVGDQCDNNEDI 314
Query: 444 TVLGINNHADNCPRNANPDQRDSDHDGIGDAC-------------DNCPRVSNPEQTDSN 490
G N+ DNCP +N +Q D D DG GDAC DNC V NP+Q D +
Sbjct: 315 DDDGHQNNQDNCPYISNANQADHDRDGQGDACDPDDDNDGVPDDRDNCRLVFNPDQEDLD 374
Query: 491 SNHIGDVC 498
+ GD+C
Sbjct: 375 GDGRGDIC 382
Score = 41.2 bits (95), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 101/429 (23%), Positives = 143/429 (33%), Gaps = 112/429 (26%)
Query: 149 CNMRPCFQGVQCFDTVEG-YTCGPCPSGYTGDGERCQRIGGCSRNPCAQGKLNEKTRCVR 207
C PCF G QC +G ++CG CP G+ G+G C+ + C+ P ++ RCV
Sbjct: 3 CLSNPCFPGAQCSSFPDGSWSCGFCPVGFLGNGTHCEDLDECALVPDICFSTSKVPRCVN 62
Query: 208 CDDIPEHPYYRCGSCPEGTTGN-----GTRCHDIDE--CDLAEPCDPR-------VQCTN 253
P + C CP GN G ++ C+ PC + +C
Sbjct: 63 -----TQPGFHCLPCPPRYRGNQPVGVGLEAAKTEKQVCEPENPCKDKTHNCHKHAECIY 117
Query: 254 LF----PGYRCDPCPAGFTGSTGVQG----------VGLEHAVRFRQTCVDIDECADGRN 299
L P Y+C+ C G+ G + G + L A C+ D C N
Sbjct: 118 LGHFSDPMYKCE-CQTGYAGDGLICGEDSDLDGWPSLNLVCATNATYHCIK-DNCPHLPN 175
Query: 300 GGCDSNSMCTNTEGSFTCTSLCRNSYMVRNVSVGCQSQNFGADVCPDGTRCDRNAKCTRI 359
G + + + N + + D G RCD C +
Sbjct: 176 SGQEDFDKDGIGDACDDDDDNDGVTDEKDNCQLLFNPRQADYDKDEVGDRCD---NCPYV 232
Query: 360 LGNHYACKCDNGWAGDGQFCGRDTDLDGWPDYDLACPDRKCRKDNCVHIPNS-------- 411
H + D G+G C D D D D +DNC ++ N+
Sbjct: 233 ---HNPAQIDTDNNGEGDACSVDIDGD----------DVFNERDNCPYVYNTDQRDTDGD 279
Query: 412 GINNHADNCPRNANPDQRMCGHSL---RIHIVFCLTVLGINNHADNCP--RNAN------ 460
G+ +H DNCP NPDQ + L + + G N+ DNCP NAN
Sbjct: 280 GVGDHCDNCPLVHNPDQTDVDNDLVGDQCDNNEDIDDDGHQNNQDNCPYISNANQADHDR 339
Query: 461 ----------------------------PDQRDSDHDGIGD-------------ACDNCP 479
PDQ D D DG GD D CP
Sbjct: 340 DGQGDACDPDDDNDGVPDDRDNCRLVFNPDQEDLDGDGRGDICKDDFDNDNIPDIDDVCP 399
Query: 480 RVSNPEQTD 488
+ +TD
Sbjct: 400 ENNAISETD 408
Score = 37.0 bits (84), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 1144 QCTNLFPGYRCDPCPAGFTGSTGVQGVGLEHAVRFRQTCVDIDECAD 1190
+C N PG+ C PCP + G+ V GVGLE A +Q C + C D
Sbjct: 59 RCVNTQPGFHCLPCPPRYRGNQPV-GVGLEAAKTEKQVCEPENPCKD 104
>pdb|1YO8|A Chain A, Structure Of The C-Terminal Domain Of Human Thrombospondin-2
Length = 634
Score = 368 bits (945), Expect = e-101, Method: Compositional matrix adjust.
Identities = 245/575 (42%), Positives = 318/575 (55%), Gaps = 75/575 (13%)
Query: 594 NPCFPGVECRDTREGP-RCMRCPDGYVGDGIHCKPGVTCNMRP--CFQGVQ---CFDT-- 645
NPCFPG +C +G C CP G++G+G HC+ C + P CF + C +T
Sbjct: 9 NPCFPGAQCSSFPDGSWSCGFCPVGFLGNGTHCEDLDECALVPDICFSTSKVPRCVNTQP 68
Query: 646 ---VFNASIRLKVTHVVLVRLDTQEMVRDV----NALVDVRATRALKASVRCDDIPEHPY 698
R + V V L+ + + V N D A P
Sbjct: 69 GFHCLPCPPRYRGNQPVGVGLEAAKTEKQVCEPENPCKDKTHNCHKHAECIYLGHFSDPX 128
Query: 699 YRCGSCPEGTTGNGTRC---HDID------------------EDNCVHIPNSGQEXXXXX 737
Y+C C G G+G C D+D +DNC H+PNSGQE
Sbjct: 129 YKC-ECQTGYAGDGLICGEDSDLDGWPNLNLVCATNATYHCIKDNCPHLPNSGQEDFDKD 187
Query: 738 XXXXXXXXXXXXXXILNPSDNCPYVHNPDQLDSDQDGMRDRRLGDACDNCPTDNCPYVHN 797
+ + DNC + NP Q D D+D +GD CDNCP YVHN
Sbjct: 188 GIGDACDDDDDNDGVTDEKDNCQLLFNPRQADYDKD-----EVGDRCDNCP-----YVHN 237
Query: 798 PDQLDSDQDGMRDRRLGDACDNCPTVPXXXXXXXXXXXXXXXXXXXMDNDGINNHADNCP 857
P Q+D+D +G GDAC +D D + N DNCP
Sbjct: 238 PAQIDTDNNGE-----GDAC-----------------------SVDIDGDDVFNERDNCP 269
Query: 858 RNANPDQRDSDHDGIGDACDNCPRVSNPEQTDSNSNHIGDVCDSGVDTDHDGVPDPMDNC 917
N DQRD+D DG+GD CDNCP V NP+QTD +++ +GD CD+ D D DG + DNC
Sbjct: 270 YVYNTDQRDTDGDGVGDHCDNCPLVHNPDQTDVDNDLVGDQCDNNEDIDDDGHQNNQDNC 329
Query: 918 PKVANPNQLDNDRDGKGDECDPDLDGDGISNDEDNCRLIYNPNQDDSDGDGVGNVCDKDF 977
P ++N NQ D+DRDG+GD CDPD D DG+ +D DNCRL++NP+Q+D DGDG G++C DF
Sbjct: 330 PYISNANQADHDRDGQGDACDPDDDNDGVPDDRDNCRLVFNPDQEDLDGDGRGDICKDDF 389
Query: 978 DKDGTPDVSDVCPNNSLVYRTDFRRYTTVILDPQGTSQIDPHWVIYNHGAEILQTMNSDP 1037
D D PD+ DVCP N+ + TDFR + V LDP+GT+QIDP+WVI + G E++QT NSDP
Sbjct: 390 DNDNIPDIDDVCPENNAISETDFRNFQXVPLDPKGTTQIDPNWVIRHQGKELVQTANSDP 449
Query: 1038 GLAIGQDKFSGVDFEGTFFVDTDIDDDYAGFVFSYQSSQKFYVMMWKKNSQVYWQTTPFR 1097
G+A+G D+F VDF GTF+V+TD DDDYAGFVF YQSS +FYV+ WK+ +Q YW+ P R
Sbjct: 450 GIAVGFDEFGSVDFSGTFYVNTDRDDDYAGFVFGYQSSSRFYVVXWKQVTQTYWEDQPTR 509
Query: 1098 AVAEPGIQLKVVDSATGPGTMLRNSLWHTGDTENQ 1132
A G+ LKVV+S TG G LRN+LWHTG+T Q
Sbjct: 510 AYGYSGVSLKVVNSTTGTGEHLRNALWHTGNTPGQ 544
Score = 149 bits (376), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 124/363 (34%), Positives = 161/363 (44%), Gaps = 95/363 (26%)
Query: 241 LAEPCDPRVQCTNLFPG-YRCDPCPAGFTGSTGVQGVGLEHAVRFRQTCVDIDECADGRN 299
L+ PC P QC++ G + C CP GF G+ C D+DECA +
Sbjct: 7 LSNPCFPGAQCSSFPDGSWSCGFCPVGFLGNG--------------THCEDLDECALVPD 52
Query: 300 GGCDSNSM---CTNTEGSFTCTSLCRNSYMVRNVSVGCQSQNFGADVC------PDGTR- 349
C S S C NT+ F C + V VG ++ VC D T
Sbjct: 53 I-CFSTSKVPRCVNTQPGFHCLPCPPRYRGNQPVGVGLEAAKTEKQVCEPENPCKDKTHN 111
Query: 350 CDRNAKCTRILGNH----YACKCDNGWAGDGQFCGRDTDLDGWPDYDLACPDR---KCRK 402
C ++A+C LG+ Y C+C G+AGDG CG D+DLDGWP+ +L C C K
Sbjct: 112 CHKHAECI-YLGHFSDPXYKCECQTGYAGDGLICGEDSDLDGWPNLNLVCATNATYHCIK 170
Query: 403 DNCVHIPNSG--------------------------------------------INNHAD 418
DNC H+PNSG + + D
Sbjct: 171 DNCPHLPNSGQEDFDKDGIGDACDDDDDNDGVTDEKDNCQLLFNPRQADYDKDEVGDRCD 230
Query: 419 NCPRNANPDQ---------RMCGHSLRIHIVFCLTVLGINNHADNCPRNANPDQRDSDHD 469
NCP NP Q C + VF N DNCP N DQRD+D D
Sbjct: 231 NCPYVHNPAQIDTDNNGEGDACSVDIDGDDVF--------NERDNCPYVYNTDQRDTDGD 282
Query: 470 GIGDACDNCPRVSNPEQTDSNSNHIGDVCDSGVDTDHDGVPDPMDNCPKVANPNQLDNDR 529
G+GD CDNCP V NP+QTD +++ +GD CD+ D D DG + DNCP ++N NQ D+DR
Sbjct: 283 GVGDHCDNCPLVHNPDQTDVDNDLVGDQCDNNEDIDDDGHQNNQDNCPYISNANQADHDR 342
Query: 530 DGK 532
DG+
Sbjct: 343 DGQ 345
Score = 75.1 bits (183), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 116/428 (27%), Positives = 159/428 (37%), Gaps = 92/428 (21%)
Query: 112 NPCFPGVECRDTREGP-RCMRCPDGYVGDGIHCKPGVTCNMRP--CFQGVQ---CFDTVE 165
NPCFPG +C +G C CP G++G+G HC+ C + P CF + C +T
Sbjct: 9 NPCFPGAQCSSFPDGSWSCGFCPVGFLGNGTHCEDLDECALVPDICFSTSKVPRCVNTQP 68
Query: 166 GYTCGPCPSGYTGDGERCQRIGGCSRNPCAQGKLNEKTRCVRCDDIPEHPYYRCGSCPEG 225
G+ C PCP Y G+ P G KT C+ PE+P C +
Sbjct: 69 GFHCLPCPPRYRGN------------QPVGVGLEAAKTEKQVCE--PENP------CKDK 108
Query: 226 TTGNGTRCHDIDEC-DLAEPCDPRVQCTNLFPGYRCDPCPAGFTGSTGVQG--------- 275
T CH EC L DP +C C G+ G + G
Sbjct: 109 T----HNCHKHAECIYLGHFSDPXYKCE----------CQTGYAGDGLICGEDSDLDGWP 154
Query: 276 -VGLEHAVRFRQTCVDIDECADGRNGGCDSNSMCTNTEGSFTCTSLCRNSYMVRNVSVGC 334
+ L A C+ D C N G + + + N +
Sbjct: 155 NLNLVCATNATYHCIK-DNCPHLPNSGQEDFDKDGIGDACDDDDDNDGVTDEKDNCQLLF 213
Query: 335 QSQNFGADVCPDGTRCDRNAKCTRILGNHYACKCDNGWAGDGQFCGRDTDLDGWPDYDLA 394
+ D G RCD C + H + D G+G C D D D
Sbjct: 214 NPRQADYDKDEVGDRCD---NCPYV---HNPAQIDTDNNGEGDACSVDIDGD-------- 259
Query: 395 CPDRKCRKDNCVHIPNS--------GINNHADNCPRNANPDQRMCGHSL---RIHIVFCL 443
D +DNC ++ N+ G+ +H DNCP NPDQ + L + +
Sbjct: 260 --DVFNERDNCPYVYNTDQRDTDGDGVGDHCDNCPLVHNPDQTDVDNDLVGDQCDNNEDI 317
Query: 444 TVLGINNHADNCPRNANPDQRDSDHDGIGDAC-------------DNCPRVSNPEQTDSN 490
G N+ DNCP +N +Q D D DG GDAC DNC V NP+Q D +
Sbjct: 318 DDDGHQNNQDNCPYISNANQADHDRDGQGDACDPDDDNDGVPDDRDNCRLVFNPDQEDLD 377
Query: 491 SNHIGDVC 498
+ GD+C
Sbjct: 378 GDGRGDIC 385
Score = 74.3 bits (181), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 31/55 (56%), Positives = 39/55 (70%)
Query: 1236 YQSSQKFYVMMWKKNSQVYWQTTPFRAVAEPGIQLKVVDSATGPGTMLRNSLWHT 1290
YQSS +FYV+ WK+ +Q YW+ P RA G+ LKVV+S TG G LRN+LWHT
Sbjct: 484 YQSSSRFYVVXWKQVTQTYWEDQPTRAYGYSGVSLKVVNSTTGTGEHLRNALWHT 538
Score = 41.2 bits (95), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 101/429 (23%), Positives = 143/429 (33%), Gaps = 112/429 (26%)
Query: 149 CNMRPCFQGVQCFDTVEG-YTCGPCPSGYTGDGERCQRIGGCSRNPCAQGKLNEKTRCVR 207
C PCF G QC +G ++CG CP G+ G+G C+ + C+ P ++ RCV
Sbjct: 6 CLSNPCFPGAQCSSFPDGSWSCGFCPVGFLGNGTHCEDLDECALVPDICFSTSKVPRCVN 65
Query: 208 CDDIPEHPYYRCGSCPEGTTGN-----GTRCHDIDE--CDLAEPCDPR-------VQCTN 253
P + C CP GN G ++ C+ PC + +C
Sbjct: 66 -----TQPGFHCLPCPPRYRGNQPVGVGLEAAKTEKQVCEPENPCKDKTHNCHKHAECIY 120
Query: 254 LF----PGYRCDPCPAGFTGSTGVQG----------VGLEHAVRFRQTCVDIDECADGRN 299
L P Y+C+ C G+ G + G + L A C+ D C N
Sbjct: 121 LGHFSDPXYKCE-CQTGYAGDGLICGEDSDLDGWPNLNLVCATNATYHCIK-DNCPHLPN 178
Query: 300 GGCDSNSMCTNTEGSFTCTSLCRNSYMVRNVSVGCQSQNFGADVCPDGTRCDRNAKCTRI 359
G + + + N + + D G RCD C +
Sbjct: 179 SGQEDFDKDGIGDACDDDDDNDGVTDEKDNCQLLFNPRQADYDKDEVGDRCD---NCPYV 235
Query: 360 LGNHYACKCDNGWAGDGQFCGRDTDLDGWPDYDLACPDRKCRKDNCVHIPNS-------- 411
H + D G+G C D D D D +DNC ++ N+
Sbjct: 236 ---HNPAQIDTDNNGEGDACSVDIDGD----------DVFNERDNCPYVYNTDQRDTDGD 282
Query: 412 GINNHADNCPRNANPDQRMCGHSL---RIHIVFCLTVLGINNHADNCP--RNAN------ 460
G+ +H DNCP NPDQ + L + + G N+ DNCP NAN
Sbjct: 283 GVGDHCDNCPLVHNPDQTDVDNDLVGDQCDNNEDIDDDGHQNNQDNCPYISNANQADHDR 342
Query: 461 ----------------------------PDQRDSDHDGIGD-------------ACDNCP 479
PDQ D D DG GD D CP
Sbjct: 343 DGQGDACDPDDDNDGVPDDRDNCRLVFNPDQEDLDGDGRGDICKDDFDNDNIPDIDDVCP 402
Query: 480 RVSNPEQTD 488
+ +TD
Sbjct: 403 ENNAISETD 411
Score = 37.0 bits (84), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 1144 QCTNLFPGYRCDPCPAGFTGSTGVQGVGLEHAVRFRQTCVDIDECAD 1190
+C N PG+ C PCP + G+ V GVGLE A +Q C + C D
Sbjct: 62 RCVNTQPGFHCLPCPPRYRGNQPV-GVGLEAAKTEKQVCEPENPCKD 107
>pdb|3FBY|A Chain A, The Crystal Structure Of The Signature Domain Of Cartilage
Oligomeric Matrix Protein.
pdb|3FBY|B Chain B, The Crystal Structure Of The Signature Domain Of Cartilage
Oligomeric Matrix Protein.
pdb|3FBY|C Chain C, The Crystal Structure Of The Signature Domain Of Cartilage
Oligomeric Matrix Protein
Length = 551
Score = 357 bits (915), Expect = 3e-98, Method: Compositional matrix adjust.
Identities = 220/395 (55%), Positives = 259/395 (65%), Gaps = 19/395 (4%)
Query: 756 SDNCPYVHNPDQLDSDQDGMRDRRLGDACD------NCPT--DNCPYVHNPDQLDSDQDG 807
DNC V N Q D D+DG +GDACD P DNCP V NPDQ ++D+D
Sbjct: 81 KDNCVTVPNSGQEDVDRDG-----IGDACDPDADGDGVPNEKDNCPLVRNPDQRNTDED- 134
Query: 808 MRDRRLGDACDNCPTVPXXXXXXXXXXXXXXXXXXXMDNDGINNHADNCPRNANPDQRDS 867
+ GDACDNC + +D D I N ADNCPR N DQ+DS
Sbjct: 135 ----KWGDACDNCRSQKNDDQKDTDQDGRGDACDDDIDGDRIRNQADNCPRVPNSDQKDS 190
Query: 868 DHDGIGDACDNCPRVSNPEQTDSNSNHIGDVCDSGVDTDHDGVPDPMDNCPKVANPNQLD 927
D DGIGDACDNCP+ SNP+Q D + + +GD CDS D D DG D DNCP V N Q D
Sbjct: 191 DGDGIGDACDNCPQKSNPDQADVDHDFVGDACDSDQDQDGDGHQDSRDNCPTVPNSAQED 250
Query: 928 NDRDGKGDECDPDLDGDGISNDEDNCRLIYNPNQDDSDGDGVGNVCDKDFDKDGTPDVSD 987
+D DG+GD CD D D DG+ + DNCRL+ NP Q+D+D DGVG+VC DFD D D D
Sbjct: 251 SDHDGQGDACDDDDDNDGVPDSRDNCRLVPNPGQEDADRDGVGDVCQDDFDADKVVDKID 310
Query: 988 VCPNNSLVYRTDFRRYTTVILDPQGTSQIDPHWVIYNHGAEILQTMNSDPGLAIGQDKFS 1047
VCP N+ V TDFR + TV+LDP+G +QIDP+WV+ N G EI+QTMNSDPGLA+G F+
Sbjct: 311 VCPENAEVTLTDFRAFQTVVLDPEGDAQIDPNWVVLNQGREIVQTMNSDPGLAVGYTAFN 370
Query: 1048 GVDFEGTFFVDTDIDDDYAGFVFSYQSSQKFYVMMWKKNSQVYWQTTPFRAVAEPGIQLK 1107
GVDFEGTF V+T DDDYAGF+F YQ S FYV+MWK+ Q YWQ PFRAVAEPGIQLK
Sbjct: 371 GVDFEGTFHVNTVTDDDYAGFIFGYQDSSSFYVVMWKQMEQTYWQANPFRAVAEPGIQLK 430
Query: 1108 VVDSATGPGTMLRNSLWHTGDTENQCDLAEPCDPR 1142
V S+TGPG LRN+LWHTGDTE+Q L DPR
Sbjct: 431 AVKSSTGPGEQLRNALWHTGDTESQVRLLWK-DPR 464
Score = 142 bits (358), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 100/238 (42%), Positives = 117/238 (49%), Gaps = 47/238 (19%)
Query: 338 NFGADVCPDGT--RCDRNAKCTRILGNHYACKCDNGWAGDGQFCGRDTDLDGWPDYDLAC 395
N CPDG+ C +A C +C C GWAG+G CGRDTDLDG+PD L C
Sbjct: 15 NSAQRFCPDGSPSECHEHADCVLERDGSRSCVCAVGWAGNGILCGRDTDLDGFPDEKLRC 74
Query: 396 PDRKCRKDNCVHIPNSG---------------------INNHADNCPRNANPDQRMCGHS 434
P+R+CRKDNCV +PNSG + N DNCP NPDQR
Sbjct: 75 PERQCRKDNCVTVPNSGQEDVDRDGIGDACDPDADGDGVPNEKDNCPLVRNPDQRNTDED 134
Query: 435 LR------------------------IHIVFCLTVLGINNHADNCPRNANPDQRDSDHDG 470
+ I N ADNCPR N DQ+DSD DG
Sbjct: 135 KWGDACDNCRSQKNDDQKDTDQDGRGDACDDDIDGDRIRNQADNCPRVPNSDQKDSDGDG 194
Query: 471 IGDACDNCPRVSNPEQTDSNSNHIGDVCDSGVDTDHDGVPDPMDNCPKVANPNQLDND 528
IGDACDNCP+ SNP+Q D + + +GD CDS D D DG D DNCP V N Q D+D
Sbjct: 195 IGDACDNCPQKSNPDQADVDHDFVGDACDSDQDQDGDGHQDSRDNCPTVPNSAQEDSD 252
Score = 92.4 bits (228), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 39/55 (70%), Positives = 43/55 (78%)
Query: 1236 YQSSQKFYVMMWKKNSQVYWQTTPFRAVAEPGIQLKVVDSATGPGTMLRNSLWHT 1290
YQ S FYV+MWK+ Q YWQ PFRAVAEPGIQLK V S+TGPG LRN+LWHT
Sbjct: 395 YQDSSSFYVVMWKQMEQTYWQANPFRAVAEPGIQLKAVKSSTGPGEQLRNALWHT 449
Score = 67.0 bits (162), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 57/138 (41%), Positives = 65/138 (47%), Gaps = 30/138 (21%)
Query: 754 NPSDNCPYVHNPDQLDSDQDGMRDRRLGDACDNCPTDNCPYVHNPDQLDSDQDGMRDRRL 813
N +DNCP V N DQ DSD DG +GDACDNCP + NPDQ D D D +
Sbjct: 174 NQADNCPRVPNSDQKDSDGDG-----IGDACDNCPQKS-----NPDQADVDHD-----FV 218
Query: 814 GDAC---------------DNCPTVPXXXXXXXXXXXXXXXXXXXMDNDGINNHADNCPR 858
GDAC DNCPTVP DNDG+ + DNC
Sbjct: 219 GDACDSDQDQDGDGHQDSRDNCPTVPNSAQEDSDHDGQGDACDDDDDNDGVPDSRDNCRL 278
Query: 859 NANPDQRDSDHDGIGDAC 876
NP Q D+D DG+GD C
Sbjct: 279 VPNPGQEDADRDGVGDVC 296
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 35/69 (50%), Gaps = 10/69 (14%)
Query: 932 GKGDECDPDLDGDGISNDE----------DNCRLIYNPNQDDSDGDGVGNVCDKDFDKDG 981
G G C D D DG +++ DNC + N Q+D D DG+G+ CD D D DG
Sbjct: 53 GNGILCGRDTDLDGFPDEKLRCPERQCRKDNCVTVPNSGQEDVDRDGIGDACDPDADGDG 112
Query: 982 TPDVSDVCP 990
P+ D CP
Sbjct: 113 VPNEKDNCP 121
>pdb|1UX6|A Chain A, Structure Of A Thrombospondin C-Terminal Fragment Reveals A
Novel Calcium Core In The Type 3 Repeats
Length = 350
Score = 297 bits (760), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 157/278 (56%), Positives = 196/278 (70%), Gaps = 1/278 (0%)
Query: 876 CDNCPRVSNPEQTDSNSNHIGDVCDSGVDTDHDGVPDPMDNCPKVANPNQLDNDRDGKGD 935
DNCP NP+Q DS+S+ IGD CD+ D D DG + +DNCP V N NQ D+D+DGKGD
Sbjct: 13 ADNCPLEHNPDQLDSDSDRIGDTCDNNQDIDEDGHQNNLDNCPYVPNANQADHDKDGKGD 72
Query: 936 ECDPDLDGDGISNDEDNCRLIYNPNQDDSDGDGVGNVCDKDFDKDGTPDVSDVCPNNSLV 995
CD D D DGI +D+DNCRL+ NP+Q DSDGDG G+ C DFD D PD+ D+CP N +
Sbjct: 73 ACDHDDDNDGIPDDKDNCRLVPNPDQKDSDGDGRGDACKDDFDHDSVPDIDDICPENVDI 132
Query: 996 YRTDFRRYTTVILDPQGTSQIDPHWVIYNHGAEILQTMNSDPGLAIGQDKFSGVDFEGTF 1055
TDFRR+ + LDP+GTSQ DP+WV+ + G E++QT+NSDPGLA+G D+F+ VDF GTF
Sbjct: 133 SETDFRRFQMIPLDPKGTSQNDPNWVVRHQGKELVQTVNSDPGLAVGYDEFNAVDFSGTF 192
Query: 1056 FVDTDIDDDYAGFVFSYQSSQKFYVMMWKKNSQVYWQTTPFRAVAEPGIQLKVVDSATGP 1115
F++T+ DDDYAGFVF YQSS +FYV+MWK+ +Q YW T P RA G+ +KVV S TGP
Sbjct: 193 FINTERDDDYAGFVFGYQSSSRFYVVMWKQVTQSYWDTNPTRAQGYSGLSVKVVKSTTGP 252
Query: 1116 GTMLRNSLWHTGDTENQCDLAEPCDPRVQCTNLFPGYR 1153
G LRN+LWHTG+T Q DPR F YR
Sbjct: 253 GEHLRNALWHTGNTPGQVRTLW-HDPRHIGWKDFTAYR 289
Score = 77.4 bits (189), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 33/55 (60%), Positives = 40/55 (72%)
Query: 1236 YQSSQKFYVMMWKKNSQVYWQTTPFRAVAEPGIQLKVVDSATGPGTMLRNSLWHT 1290
YQSS +FYV+MWK+ +Q YW T P RA G+ +KVV S TGPG LRN+LWHT
Sbjct: 209 YQSSSRFYVVMWKQVTQSYWDTNPTRAQGYSGLSVKVVKSTTGPGEHLRNALWHT 263
Score = 66.6 bits (161), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 63/175 (36%), Positives = 75/175 (42%), Gaps = 48/175 (27%)
Query: 756 SDNCPYVHNPDQLDSDQDGMRDRRLGDACDNCPTDNCPYVHNPDQLDSDQDGMRDRRLGD 815
+DNCP HNPDQLDSD D R+GD CDN D D+DG ++
Sbjct: 13 ADNCPLEHNPDQLDSDSD-----RIGDTCDN-------------NQDIDEDGHQNN---- 50
Query: 816 ACDNCPTVPXXXXXXXXXXXXXXXXXXXMDNDGINNHADNCPRNANPDQRDSDHDGIGDA 875
DNCP VP DNDGI + DNC NPDQ+DSD DG GDA
Sbjct: 51 -LDNCPYVPNANQADHDKDGKGDACDHDDDNDGIPDDKDNCRLVPNPDQKDSDGDGRGDA 109
Query: 876 CDNCPRVSNPEQTDSNSNHIGDVCDSGVDTDHDGVPDPMDNCPKVANPNQLDNDR 930
C + D DHD VPD D CP+ + ++ D R
Sbjct: 110 CKD-------------------------DFDHDSVPDIDDICPENVDISETDFRR 139
Score = 65.5 bits (158), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/58 (55%), Positives = 40/58 (68%)
Query: 475 CDNCPRVSNPEQTDSNSNHIGDVCDSGVDTDHDGVPDPMDNCPKVANPNQLDNDRDGK 532
DNCP NP+Q DS+S+ IGD CD+ D D DG + +DNCP V N NQ D+D+DGK
Sbjct: 13 ADNCPLEHNPDQLDSDSDRIGDTCDNNQDIDEDGHQNNLDNCPYVPNANQADHDKDGK 70
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/131 (40%), Positives = 64/131 (48%), Gaps = 22/131 (16%)
Query: 417 ADNCPRNANPDQRMCGHSLRIHIVFC-----LTVLGINNHADNCPRNANPDQRDSDHDGI 471
ADNCP NPDQ + S RI C + G N+ DNCP N +Q D D DG
Sbjct: 13 ADNCPLEHNPDQ-LDSDSDRIGDT-CDNNQDIDEDGHQNNLDNCPYVPNANQADHDKDGK 70
Query: 472 GDAC-------------DNCPRVSNPEQTDSNSNHIGDVCDSGVDTDHDGVPDPMDNCPK 518
GDAC DNC V NP+Q DS+ + GD C D DHD VPD D CP+
Sbjct: 71 GDACDHDDDNDGIPDDKDNCRLVPNPDQKDSDGDGRGDACKD--DFDHDSVPDIDDICPE 128
Query: 519 VANPNQLDNDR 529
+ ++ D R
Sbjct: 129 NVDISETDFRR 139
Score = 40.8 bits (94), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/67 (46%), Positives = 34/67 (50%), Gaps = 8/67 (11%)
Query: 754 NPSDNCPYVHNPDQLDSDQDGM---RDRRLGDACDNCPTDNCPYVHNPDQLDSDQDGMRD 810
N DNCPYV N +Q D D+DG D + DNC V NPDQ DSD DG
Sbjct: 49 NNLDNCPYVPNANQADHDKDGKGDACDHDDDNDGIPDDKDNCRLVPNPDQKDSDGDGR-- 106
Query: 811 RRLGDAC 817
GDAC
Sbjct: 107 ---GDAC 110
Score = 34.3 bits (77), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 43/97 (44%), Gaps = 8/97 (8%)
Query: 716 HDIDEDNCVHIPNSGQEXXXXXXXXXXXXXXXXXXXILNPSDNCPYVHNPDQLDSDQDGM 775
H + DNC ++PN+ Q I + DNC V NPDQ DSD DG
Sbjct: 47 HQNNLDNCPYVPNANQADHDKDGKGDACDHDDDNDGIPDDKDNCRLVPNPDQKDSDGDGR 106
Query: 776 RDRRLGDAC-DNCPTDNCPYVHN--PDQLDSDQDGMR 809
GDAC D+ D+ P + + P+ +D + R
Sbjct: 107 -----GDACKDDFDHDSVPDIDDICPENVDISETDFR 138
>pdb|4D90|A Chain A, Crystal Structure Of Del-1 Egf Domains
pdb|4D90|B Chain B, Crystal Structure Of Del-1 Egf Domains
Length = 143
Score = 38.9 bits (89), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 58/135 (42%), Gaps = 23/135 (17%)
Query: 149 CNMRPCFQGVQCFDTVE--GYTCGPCPSGYT-----------GDGERCQRIGGCSRNPCA 195
C+ PC G C + ++C CP G+T D E G C+ NPC
Sbjct: 3 CDPNPCENGGICLPGLADGSFSC-ECPDGFTDPNCSSVVEVASDEEEPTSAGPCTPNPCH 61
Query: 196 QGKLNEKTRCVRCDDIPEHPYYRCGSCPEGTTGNGTRC-HDIDECDLAEPCDPRVQCTNL 254
G E + R D Y C CP G NG C H+I+EC++ EPC CT+L
Sbjct: 62 NGGTCEISEAYRGDTFIG---YVC-KCPRGF--NGIHCQHNINECEV-EPCKNGGICTDL 114
Query: 255 FPGYRCDPCPAGFTG 269
Y C+ CP F G
Sbjct: 115 VANYSCE-CPGEFMG 128
Score = 34.3 bits (77), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 42/86 (48%), Gaps = 15/86 (17%)
Query: 104 KKPTCA---TDNPCFPGVECR-------DTREGPRCMRCPDGYVGDGIHCKPGVT-CNMR 152
++PT A T NPC G C DT G C +CP G+ +GIHC+ + C +
Sbjct: 47 EEPTSAGPCTPNPCHNGGTCEISEAYRGDTFIGYVC-KCPRGF--NGIHCQHNINECEVE 103
Query: 153 PCFQGVQCFDTVEGYTCGPCPSGYTG 178
PC G C D V Y+C CP + G
Sbjct: 104 PCKNGGICTDLVANYSC-ECPGEFMG 128
Score = 30.4 bits (67), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 37/78 (47%), Gaps = 14/78 (17%)
Query: 586 KKPTCA---TDNPCFPGVECR-------DTREGPRCMRCPDGYVGDGIHCKPGVT-CNMR 634
++PT A T NPC G C DT G C +CP G+ +GIHC+ + C +
Sbjct: 47 EEPTSAGPCTPNPCHNGGTCEISEAYRGDTFIGYVC-KCPRGF--NGIHCQHNINECEVE 103
Query: 635 PCFQGVQCFDTVFNASIR 652
PC G C D V N S
Sbjct: 104 PCKNGGICTDLVANYSCE 121
>pdb|2BO2|A Chain A, Egf Domains 1,2,5 Of Human Emr2, A 7-Tm Immune System
Molecule, In Complex With Calcium.
pdb|2BO2|B Chain B, Egf Domains 1,2,5 Of Human Emr2, A 7-Tm Immune System
Molecule, In Complex With Calcium.
pdb|2BOU|A Chain A, Egf Domains 1,2,5 Of Human Emr2, A 7-Tm Immune System
Molecule, In Complex With Barium.
pdb|2BOX|A Chain A, Egf Domains 1,2,5 Of Human Emr2, A 7-Tm Immune System
Molecule, In Complex With Strontium
Length = 143
Score = 38.9 bits (89), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 57/119 (47%), Gaps = 18/119 (15%)
Query: 259 RCDPCPAGFTGSTGVQGVGLEHAVRFRQTCVDIDECADGRNGGCDSNSMCTNTEGSFTCT 318
RC+P GF+ + + +E TC DI+ECA C S C NTEGS+ C
Sbjct: 22 RCNP---GFSSFSEIITTPME-------TCDDINECATLSKVSCGKFSDCWNTEGSYDC- 70
Query: 319 SLCRNSY--MVRNVSVGCQSQNFGADV--CPDGT-RCDRNAKCTRILGNHYACKCDNGW 372
+C Y + + +S+N DV C G +CD + C +G+ Y+C+C GW
Sbjct: 71 -VCSPGYEPVSGAKTFKNESENTCQDVDECSSGQHQCDSSTVCFNTVGS-YSCRCRPGW 127
>pdb|2VJ3|A Chain A, Human Notch-1 Egfs 11-13
Length = 135
Score = 35.0 bits (79), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 5/70 (7%)
Query: 110 TDNPCFPGVECRDTREGPRCMRCPDGYVGDGIHCKPGV-TCNMRPCFQGVQCFDTVEGYT 168
NPC C D +C+ C GY +G+HC+ C PC +C D + +
Sbjct: 49 VSNPCQNDATCLDQIGEFQCI-CMPGY--EGVHCEVNTDECASSPCLHNGRCLDKINEFQ 105
Query: 169 CGPCPSGYTG 178
C CP+G+TG
Sbjct: 106 C-ECPTGFTG 114
>pdb|1TOZ|A Chain A, Nmr Structure Of The Human Notch-1 Ligand Binding Region
Length = 116
Score = 33.1 bits (74), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 5/71 (7%)
Query: 109 ATDNPCFPGVECRDTREGPRCMRCPDGYVGDGIHCKPGV-TCNMRPCFQGVQCFDTVEGY 167
NPC C D +C+ C GY +G+HC+ C PC +C D + +
Sbjct: 46 CVSNPCQNDATCLDQIGEFQCI-CMPGY--EGVHCEVNTDECASSPCLHNGRCLDKINEF 102
Query: 168 TCGPCPSGYTG 178
C CP+G+TG
Sbjct: 103 QC-ECPTGFTG 112
>pdb|1EMN|A Chain A, Nmr Study Of A Pair Of Fibrillin Ca2+ Binding Epidermal
Growth Factor-Like Domains, Minimized Average Structure
pdb|1EMO|A Chain A, Nmr Study Of A Pair Of Fibrillin Ca2+ Binding Epidermal
Growth Factor-Like Domains, 22 Structures
Length = 82
Score = 32.3 bits (72), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
Query: 217 YRCGSCPEGTTGNGTRCHDIDECDLAEPCDPRVQCTNLFPGYRCDPCPAGF 267
YRC CP G G C D DEC + PC C N+ G+ C C GF
Sbjct: 26 YRC-ECPFGYILAGNECVDTDECSVGNPCG-NGTCKNVIGGFECT-CEEGF 73
>pdb|3V65|B Chain B, Crystal Structure Of Agrin And Lrp4 Complex
pdb|3V65|D Chain D, Crystal Structure Of Agrin And Lrp4 Complex
Length = 386
Score = 31.6 bits (70), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 6/43 (13%)
Query: 286 QTCVDIDECADGRNGGCDSNSMCTNTEGSFTCTSLCRNSYMVR 328
+TC D++ECA+ G C CTN+EG+F C C Y +R
Sbjct: 39 RTCQDVNECAE--EGYCSQG--CTNSEGAFQC--WCEAGYELR 75
>pdb|1LMJ|A Chain A, Nmr Study Of The Fibrillin-1 Cbegf12-13 Pair Of Ca2+
Binding Epidermal Growth Factor-like Domains
Length = 86
Score = 31.2 bits (69), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 36/83 (43%), Gaps = 14/83 (16%)
Query: 235 DIDECDLAEPCDPRVQCTNLFPGYRCDPCPAGFTGSTGVQGVGLEHAVRFRQTCVDIDEC 294
DIDEC ++ R QC N + C C G+ E + C+DIDEC
Sbjct: 2 DIDECRISPDLCGRGQCVNTPGDFECK-CDEGY-----------ESGFMMMKNCMDIDEC 49
Query: 295 ADGRNGGCDSNSMCTNTEGSFTC 317
R+ +C NTEGS+ C
Sbjct: 50 Q--RDPLLCRGGVCHNTEGSYRC 70
>pdb|3P5B|L Chain L, The Structure Of The LdlrPCSK9 COMPLEX REVEALS THE
RECEPTOR IN AN Extended Conformation
Length = 400
Score = 31.2 bits (69), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 25/52 (48%), Gaps = 5/52 (9%)
Query: 217 YRCGSCPEGTTGNGTR-CHDIDECDLAEPCDPRVQCTNLFPGYRCDPCPAGF 267
Y C CP+G R C DIDEC + C C NL GY+C C GF
Sbjct: 21 YEC-LCPDGFQLVAQRRCEDIDECQDPDTCSQ--LCVNLEGGYKCQ-CEEGF 68
>pdb|3F7R|A Chain A, First Pair Of Fibronectin Type Iii Domains And Part Of The
Connecting Segment Of The Integrin Beta4
Length = 249
Score = 30.8 bits (68), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Query: 1120 RNSLWHTGDTENQCDLAEPCDPRVQCTNLFP--GYRCDPCPAGFTG 1163
R W GD+E++ L + P V+ TNL+P Y C G G
Sbjct: 37 RVKYWIQGDSESEAHLLDSKVPSVELTNLYPYCDYEMKVCAYGAQG 82
>pdb|3F7P|C Chain C, Crystal Structure Of A Complex Between Integrin Beta4 And
Plectin
pdb|3F7P|D Chain D, Crystal Structure Of A Complex Between Integrin Beta4 And
Plectin
pdb|3F7P|E Chain E, Crystal Structure Of A Complex Between Integrin Beta4 And
Plectin
Length = 248
Score = 30.8 bits (68), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Query: 1120 RNSLWHTGDTENQCDLAEPCDPRVQCTNLFP--GYRCDPCPAGFTG 1163
R W GD+E++ L + P V+ TNL+P Y C G G
Sbjct: 36 RVKYWIQGDSESEAHLLDSKVPSVELTNLYPYCDYEMKVCAYGAQG 81
>pdb|3P5C|L Chain L, The Structure Of The LdlrPCSK9 COMPLEX REVEALS THE
RECEPTOR IN AN Extended Conformation
Length = 440
Score = 30.8 bits (68), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 25/52 (48%), Gaps = 5/52 (9%)
Query: 217 YRCGSCPEGTTGNGTR-CHDIDECDLAEPCDPRVQCTNLFPGYRCDPCPAGF 267
Y C CP+G R C DIDEC + C C NL GY+C C GF
Sbjct: 61 YEC-LCPDGFQLVAQRRCEDIDECQDPDTCSQ--LCVNLEGGYKCQ-CEEGF 108
>pdb|2ZUE|A Chain A, Crystal Structure Of Pyrococcus Horikoshii Arginyl-Trna
Synthetase Complexed With Trna(Arg) And An Atp Analog
(Anp)
pdb|2ZUF|A Chain A, Crystal Structure Of Pyrococcus Horikoshii Arginyl-Trna
Synthetase Complexed With Trna(Arg)
Length = 629
Score = 30.4 bits (67), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Query: 26 VKDDLL--DDGVINGLLLGVKQDIMGARYTLYMDCVDHGTVAMTQSLKKMFDSMKNPQMR 83
VK DLL + ++ L + +++ Y+ A L+K+F MKNP +
Sbjct: 262 VKYDLLVWESDIVRRKLFEIALELLSKNENFYIPSDGKYRGAFVMDLRKLFPDMKNPILV 321
Query: 84 LRKTD 88
LR++D
Sbjct: 322 LRRSD 326
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.138 0.462
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,853,302
Number of Sequences: 62578
Number of extensions: 2111832
Number of successful extensions: 3639
Number of sequences better than 100.0: 60
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 53
Number of HSP's that attempted gapping in prelim test: 3197
Number of HSP's gapped (non-prelim): 239
length of query: 1290
length of database: 14,973,337
effective HSP length: 110
effective length of query: 1180
effective length of database: 8,089,757
effective search space: 9545913260
effective search space used: 9545913260
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)