RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy620
(1290 letters)
>3fby_A COMP, cartilage oligomeric matrix protein; signature domain, cell
adhesion, disease mutation, dwarfism, EGF-like domain,
glycoprotein, secreted; HET: NAG MAN; 3.15A {Homo
sapiens}
Length = 551
Score = 386 bits (993), Expect = e-121
Identities = 239/460 (51%), Positives = 279/460 (60%), Gaps = 24/460 (5%)
Query: 687 SVRCDDIPEHPYYRCGSCPEGTTGNGTRCHDIDEDNCVH---IPNSGQEDADEDNIGDIC 743
P C E R V D D D D
Sbjct: 12 VWWNSAQRFCPDGSPSECHEHADCVLERDGSRSCVCAVGWAGNGILCGRDTDLDGFPDEK 71
Query: 744 DDDADNDGILNPSDNCPYVHNPDQLDSDQDGMRDRRLGDACDNCP--------TDNCPYV 795
+ DNC V N Q D D+DG +GDACD DNCP V
Sbjct: 72 LRCPERQCR---KDNCVTVPNSGQEDVDRDG-----IGDACDPDADGDGVPNEKDNCPLV 123
Query: 796 HNPDQLDSDQDGMRDRRLGDACDNCPTVPNVDQTDTDNDGTGDACDNDMDNDGINNHADN 855
NPDQ ++D+D GDACDNC + N DQ DTD DG GDACD+D+D D I N ADN
Sbjct: 124 RNPDQRNTDEDK-----WGDACDNCRSQKNDDQKDTDQDGRGDACDDDIDGDRIRNQADN 178
Query: 856 CPRNANPDQRDSDHDGIGDACDNCPRVSNPEQTDSNSNHIGDVCDSGVDTDHDGVPDPMD 915
CPR N DQ+DSD DGIGDACDNCP+ SNP+Q D + + +GD CDS D D DG D D
Sbjct: 179 CPRVPNSDQKDSDGDGIGDACDNCPQKSNPDQADVDHDFVGDACDSDQDQDGDGHQDSRD 238
Query: 916 NCPKVANPNQLDNDRDGKGDECDPDLDGDGISNDEDNCRLIYNPNQDDSDGDGVGNVCDK 975
NCP V N Q D+D DG+GD CD D D DG+ + DNCRL+ NP Q+D+D DGVG+VC
Sbjct: 239 NCPTVPNSAQEDSDHDGQGDACDDDDDNDGVPDSRDNCRLVPNPGQEDADRDGVGDVCQD 298
Query: 976 DFDKDGTPDVSDVCPNNSLVYRTDFRRYTTVILDPQGTSQIDPHWVIYNHGAEILQTMNS 1035
DFD D D DVCP N+ V TDFR + TV+LDP+G +QIDP+WV+ N G EI+QTMNS
Sbjct: 299 DFDADKVVDKIDVCPENAEVTLTDFRAFQTVVLDPEGDAQIDPNWVVLNQGREIVQTMNS 358
Query: 1036 DPGLAIGQDKFSGVDFEGTFFVDTDIDDDYAGFVFSYQSSQKFYVMMWKKNSQVYWQTTP 1095
DPGLA+G F+GVDFEGTF V+T DDDYAGF+F YQ S FYV+MWK+ Q YWQ P
Sbjct: 359 DPGLAVGYTAFNGVDFEGTFHVNTVTDDDYAGFIFGYQDSSSFYVVMWKQMEQTYWQANP 418
Query: 1096 FRAVAEPGIQLKVVDSATGPGTMLRNSLWHTGDTENQCDL 1135
FRAVAEPGIQLK V S+TGPG LRN+LWHTGDTE+Q L
Sbjct: 419 FRAVAEPGIQLKAVKSSTGPGEQLRNALWHTGDTESQVRL 458
Score = 131 bits (332), Expect = 5e-32
Identities = 70/230 (30%), Positives = 87/230 (37%), Gaps = 21/230 (9%)
Query: 773 DGMRDRRLGDACDNCPTDNCPYVHNPDQLDSDQDGMRDRRLGDACDNCPTVPNVDQTDTD 832
+ C + C H ++DG R + DTD
Sbjct: 10 SPVWWNSAQRFCPDGSPSEC---HEHADCVLERDGSRS---CVCAVGWAGNGILCGRDTD 63
Query: 833 NDGTGDACDNDMDNDGINNHADNCPRNANPDQRDSDHDGIGDACDNCPRVSNPEQTDSNS 892
DG D + DNC N Q D D DGIGDACD +
Sbjct: 64 LDGFPDEKLRCPERQCRK---DNCVTVPNSGQEDVDRDGIGDACDPDA--DGDGVPNEKD 118
Query: 893 NHIGDVCDSGVDTDHDGVPDPMDNCPKVANPNQLDNDRDGKGDECDPDLDGDGISNDEDN 952
N +TD D D DNC N +Q D D+DG+GD CD D+DGD I N DN
Sbjct: 119 NCPLVRNPDQRNTDEDKWGDACDNCRSQKNDDQKDTDQDGRGDACDDDIDGDRIRNQADN 178
Query: 953 CRLIYNPNQDDSDGDGVGNVCD----------KDFDKDGTPDVSDVCPNN 992
C + N +Q DSDGDG+G+ CD D D D D D +
Sbjct: 179 CPRVPNSDQKDSDGDGIGDACDNCPQKSNPDQADVDHDFVGDACDSDQDQ 228
Score = 127 bits (321), Expect = 1e-30
Identities = 102/241 (42%), Positives = 119/241 (49%), Gaps = 47/241 (19%)
Query: 338 NFGADVCPDGTR--CDRNAKCTRILGNHYACKCDNGWAGDGQFCGRDTDLDGWPDYDLAC 395
N CPDG+ C +A C +C C GWAG+G CGRDTDLDG+PD L C
Sbjct: 15 NSAQRFCPDGSPSECHEHADCVLERDGSRSCVCAVGWAGNGILCGRDTDLDGFPDEKLRC 74
Query: 396 PDRKCRKDNCVHIPNS---------------------GINNHADNCPRNANPDQR----- 429
P+R+CRKDNCV +PNS G+ N DNCP NPDQR
Sbjct: 75 PERQCRKDNCVTVPNSGQEDVDRDGIGDACDPDADGDGVPNEKDNCPLVRNPDQRNTDED 134
Query: 430 -------------------MCGHSLRIHIVFCLTVLGINNHADNCPRNANPDQRDSDHDG 470
+ I N ADNCPR N DQ+DSD DG
Sbjct: 135 KWGDACDNCRSQKNDDQKDTDQDGRGDACDDDIDGDRIRNQADNCPRVPNSDQKDSDGDG 194
Query: 471 IGDACDNCPRVSNPEQTDSNSNHIGDVCDSGVDTDHDGVPDPMDNCPKVANPNQLDNDRD 530
IGDACDNCP+ SNP+Q D + + +GD CDS D D DG D DNCP V N Q D+D D
Sbjct: 195 IGDACDNCPQKSNPDQADVDHDFVGDACDSDQDQDGDGHQDSRDNCPTVPNSAQEDSDHD 254
Query: 531 G 531
G
Sbjct: 255 G 255
Score = 77.3 bits (190), Expect = 1e-14
Identities = 78/332 (23%), Positives = 101/332 (30%), Gaps = 35/332 (10%)
Query: 225 GTTGNGTR-CHDIDEC--DLAEPCDPRVQCTNLFPGYRCDPCPAGFTGSTGVQGV----- 276
G + C C C G R C G+ G+ + G
Sbjct: 6 GVPTSPVWWNSAQRFCPDGSPSECHEHADCVLERDGSRSCVCAVGWAGNGILCGRDTDLD 65
Query: 277 GLEHAVRFRQTCVDIDECADGRNGGCDSNSMCTNTEGSFTCTSLCRNSYMVRNVSVGCQS 336
G C + D +S + +G + V N C
Sbjct: 66 GFPDEK---LRCPERQCRKDNCVTVPNSGQEDVDRDGIGDACDPDADGDGVPNEKDNCPL 122
Query: 337 QNFGADVCPDGTRC-DRNAKCTRILGNHYACKCDNGWAGDGQFCGRDTDLDGWPDYDLAC 395
D + D C + D G G C D D D + C
Sbjct: 123 VRNPDQRNTDEDKWGDACDNCRSQKNDDQK---DTDQDGRGDACDDDIDGDRIRNQADNC 179
Query: 396 PDRKCRKDNCVHIPNSGINNHADNCPRNANPDQR---MCGHSLRIHIVFCLTVLGINNHA 452
P + GI + DNCP+ +NPDQ G +
Sbjct: 180 PR--VPNSDQKDSDGDGIGDACDNCPQKSNPDQADVDHDFVGDACDSDQDQDGDGHQDSR 237
Query: 453 DNCPRNANPDQRDSDHDGIGDA-------------CDNCPRVSNPEQTDSNSNHIGDVCD 499
DNCP N Q DSDHDG GDA DNC V NP Q D++ + +GDVC
Sbjct: 238 DNCPTVPNSAQEDSDHDGQGDACDDDDDNDGVPDSRDNCRLVPNPGQEDADRDGVGDVCQ 297
Query: 500 SGVDTDHDGVPDPMDNCPKVANPNQLDNDRDG 531
D D D V D +D CP+ A D
Sbjct: 298 D--DFDADKVVDKIDVCPENAEVTLTDFRAFQ 327
Score = 75.0 bits (184), Expect = 8e-14
Identities = 39/55 (70%), Positives = 43/55 (78%)
Query: 1236 YQSSQKFYVMMWKKNSQVYWQTTPFRAVAEPGIQLKVVDSATGPGTMLRNSLWHT 1290
YQ S FYV+MWK+ Q YWQ PFRAVAEPGIQLK V S+TGPG LRN+LWHT
Sbjct: 395 YQDSSSFYVVMWKQMEQTYWQANPFRAVAEPGIQLKAVKSSTGPGEQLRNALWHT 449
Score = 58.4 bits (141), Expect = 9e-09
Identities = 28/124 (22%), Positives = 47/124 (37%), Gaps = 5/124 (4%)
Query: 878 NCPRVSNPEQTDSNSNHIGDVCDSGVDTDHDGVPDPMDNCPKVANPNQLDNDRDGKG--D 935
+ ++ ++ + + + + DG + N D D G D
Sbjct: 10 SPVWWNSAQRFCPDGSPSECHEHADCVLERDGSRSCVCAVGWAGNGILCGRDTDLDGFPD 69
Query: 936 ECDPDLDGDGISNDEDNCRLIYNPNQDDSDGDGVGNVCDKDFDKDGTPDVSDVCPNNSLV 995
E + +DNC + N Q+D D DG+G+ CD D D DG P+ D CP
Sbjct: 70 EKLRCPERQC---RKDNCVTVPNSGQEDVDRDGIGDACDPDADGDGVPNEKDNCPLVRNP 126
Query: 996 YRTD 999
+ +
Sbjct: 127 DQRN 130
Score = 56.5 bits (136), Expect = 4e-08
Identities = 38/177 (21%), Positives = 52/177 (29%), Gaps = 32/177 (18%)
Query: 381 RDTDLDGWPDYDLACPDRKCRK-------------DNCVHIPNSGINNHADNCPRNANPD 427
+D+D DG D CP + D+ G + DNCP N
Sbjct: 188 KDSDGDGIGDACDNCPQKSNPDQADVDHDFVGDACDSDQDQDGDGHQDSRDNCPTVPNSA 247
Query: 428 QR-MCGHSLRIHIVFCLTVLGINNHADNCPRNANPDQRDSDHDGIGDA------------ 474
Q G+ + DNC NP Q D+D DG+GD
Sbjct: 248 QEDSDHDGQGDACDDDDDNDGVPDSRDNCRLVPNPGQEDADRDGVGDVCQDDFDADKVVD 307
Query: 475 -CDNCPRVSNPEQTDSNSNHIGDVCDSGVDTDHDGVPDPMDNCPKVANPNQLDNDRD 530
D CP + TD + +D + D DP + D
Sbjct: 308 KIDVCPENAEVTLTDFRAFQTVV-----LDPEGDAQIDPNWVVLNQGREIVQTMNSD 359
Score = 54.9 bits (132), Expect = 1e-07
Identities = 43/154 (27%), Positives = 53/154 (34%), Gaps = 32/154 (20%)
Query: 388 WPDYDLACPDRKCRKDNCVHIPNSGINNHADNCPRNANPDQRMCGHSLRIHIVFCLTVLG 447
WP + + C S + HAD C +
Sbjct: 4 WPGVPTSPVWWNSAQRFCPDGSPSECHEHAD-CVLERDGS-------------------R 43
Query: 448 INNHADNCPRNANPDQRDSDHDGIGDACD----------NCPRVSNPEQTDSNSNHIGDV 497
A N RD+D DG D NC V N Q D + + IGD
Sbjct: 44 SCVCAVGWAGNGILCGRDTDLDGFPDEKLRCPERQCRKDNCVTVPNSGQEDVDRDGIGDA 103
Query: 498 CDSGVDTDHDGVPDPMDNCPKVANPNQLDNDRDG 531
CD D D DGVP+ DNCP V NP+Q + D D
Sbjct: 104 CDP--DADGDGVPNEKDNCPLVRNPDQRNTDEDK 135
>1yo8_A Thrombospondin-2; EGF, Ca(2+)-binding domains, lectin domain,
disulfide, cell; HET: NAG MAN; 2.60A {Homo sapiens} PDB:
2rhp_A*
Length = 634
Score = 370 bits (952), Expect = e-114
Identities = 240/558 (43%), Positives = 313/558 (56%), Gaps = 33/558 (5%)
Query: 593 DNPCFPGVECRDTREGP-RCMRCPDGYVGDGIHCKPGVTCNM-----RPCFQGVQCFDTV 646
NPCFPG +C +G C CP G++G+G HC+ C + + +C +T
Sbjct: 8 SNPCFPGAQCSSFPDGSWSCGFCPVGFLGNGTHCEDLDECALVPDICFSTSKVPRCVNTQ 67
Query: 647 FNASIRLKVTHVVLVRLDTQEMVRDVNALVDVRATRALKASVRCDDIPEHPYYRCGSCPE 706
N V V A C+ +C +
Sbjct: 68 PG------------FHCLPCPPRYRGNQPVGVGLEAAKTEKQVCEPENPCKDK-THNCHK 114
Query: 707 GTTGNGTRCHDIDEDNC------VHIPNSGQEDADEDNIGDICDDDADNDGILNPSDNCP 760
C ED+D D ++ A N DNCP
Sbjct: 115 HAECIYLGHFSDPMYKCECQTGYAGDGLICGEDSDLDGWPNLNLVCATNATYHCIKDNCP 174
Query: 761 YVHNPDQLDSDQDGMRDRRLGDACDNCPTDN---CPYVHNPDQLDSDQDGMRDRRLGDAC 817
++ N Q D D+DG+ D D ++ TD C + NP Q D D+D + GD C
Sbjct: 175 HLPNSGQEDFDKDGIGDACDDDDDNDGVTDEKDNCQLLFNPRQADYDKDEV-----GDRC 229
Query: 818 DNCPTVPNVDQTDTDNDGTGDACDNDMDNDGINNHADNCPRNANPDQRDSDHDGIGDACD 877
DNCP V N Q DTDN+G GDAC D+D D + N DNCP N DQRD+D DG+GD CD
Sbjct: 230 DNCPYVHNPAQIDTDNNGEGDACSVDIDGDDVFNERDNCPYVYNTDQRDTDGDGVGDHCD 289
Query: 878 NCPRVSNPEQTDSNSNHIGDVCDSGVDTDHDGVPDPMDNCPKVANPNQLDNDRDGKGDEC 937
NCP V NP+QTD +++ +GD CD+ D D DG + DNCP ++N NQ D+DRDG+GD C
Sbjct: 290 NCPLVHNPDQTDVDNDLVGDQCDNNEDIDDDGHQNNQDNCPYISNANQADHDRDGQGDAC 349
Query: 938 DPDLDGDGISNDEDNCRLIYNPNQDDSDGDGVGNVCDKDFDKDGTPDVSDVCPNNSLVYR 997
DPD D DG+ +D DNCRL++NP+Q+D DGDG G++C DFD D PD+ DVCP N+ +
Sbjct: 350 DPDDDNDGVPDDRDNCRLVFNPDQEDLDGDGRGDICKDDFDNDNIPDIDDVCPENNAISE 409
Query: 998 TDFRRYTTVILDPQGTSQIDPHWVIYNHGAEILQTMNSDPGLAIGQDKFSGVDFEGTFFV 1057
TDFR + V LDP+GT+QIDP+WVI + G E++QT NSDPG+A+G D+F VDF GTF+V
Sbjct: 410 TDFRNFQMVPLDPKGTTQIDPNWVIRHQGKELVQTANSDPGIAVGFDEFGSVDFSGTFYV 469
Query: 1058 DTDIDDDYAGFVFSYQSSQKFYVMMWKKNSQVYWQTTPFRAVAEPGIQLKVVDSATGPGT 1117
+TD DDDYAGFVF YQSS +FYV+MWK+ +Q YW+ P RA G+ LKVV+S TG G
Sbjct: 470 NTDRDDDYAGFVFGYQSSSRFYVVMWKQVTQTYWEDQPTRAYGYSGVSLKVVNSTTGTGE 529
Query: 1118 MLRNSLWHTGDTENQCDL 1135
LRN+LWHTG+T Q
Sbjct: 530 HLRNALWHTGNTPGQVRT 547
Score = 176 bits (447), Expect = 3e-46
Identities = 115/361 (31%), Positives = 150/361 (41%), Gaps = 34/361 (9%)
Query: 186 IGGCSRNPCAQGKLNEKTRCVRCDDIPEHPYYRCGSCPEGTTGNGTRCHDIDECDLA--- 242
GC NPC G +C P+ + CG CP G GNGT C D+DEC L
Sbjct: 3 PDGCLSNPCFPG--------AQCSSFPD-GSWSCGFCPVGFLGNGTHCEDLDECALVPDI 53
Query: 243 -EPCDPRVQCTNLFPGYRCDPCPAGFTGSTGVQGVGLEHAVRFRQTCVDIDECADGRNGG 301
+C N PG+ C PCP + G GVGLE A +Q C + C D
Sbjct: 54 CFSTSKVPRCVNTQPGFHCLPCPPRYRG-NQPVGVGLEAAKTEKQVCEPENPCKDK-THN 111
Query: 302 CDSNSMCTN----TEGSFTCTSLCRNSYMVRNVSVGCQSQN----FGADVCPDGTRCDRN 353
C ++ C ++ + C C+ Y + G S VC
Sbjct: 112 CHKHAECIYLGHFSDPMYKCE--CQTGYAGDGLICGEDSDLDGWPNLNLVCATNATYHCI 169
Query: 354 AKCTRILGNHYACKCDNGWAGDGQFCGRDTD--LDGWPDYDLACPDRKCRKDNCVHIPNS 411
L N D GD D D D + L R+ D
Sbjct: 170 KDNCPHLPNSGQEDFDKDGIGDACDDDDDNDGVTDEKDNCQLLFNPRQADYDKD------ 223
Query: 412 GINNHADNCPRNANPDQR-MCGHSLRIHIVFCLTVLGINNHADNCPRNANPDQRDSDHDG 470
+ + DNCP NP Q + + + N DNCP N DQRD+D DG
Sbjct: 224 EVGDRCDNCPYVHNPAQIDTDNNGEGDACSVDIDGDDVFNERDNCPYVYNTDQRDTDGDG 283
Query: 471 IGDACDNCPRVSNPEQTDSNSNHIGDVCDSGVDTDHDGVPDPMDNCPKVANPNQLDNDRD 530
+GD CDNCP V NP+QTD +++ +GD CD+ D D DG + DNCP ++N NQ D+DRD
Sbjct: 284 VGDHCDNCPLVHNPDQTDVDNDLVGDQCDNNEDIDDDGHQNNQDNCPYISNANQADHDRD 343
Query: 531 G 531
G
Sbjct: 344 G 344
Score = 133 bits (336), Expect = 3e-32
Identities = 98/311 (31%), Positives = 131/311 (42%), Gaps = 43/311 (13%)
Query: 235 DIDECDLAEPCDPRVQCTNLFPG-YRCDPCPAGFTGSTGVQGVGLEHAVRFRQTCVDIDE 293
D D C + PC P QC++ G + C CP GF G+ C D+DE
Sbjct: 2 DPDGCL-SNPCFPGAQCSSFPDGSWSCGFCPVGFLGNG--------------THCEDLDE 46
Query: 294 CADGRNG--GCDSNSMCTNTEGSFTCTSLCRNSYMVRNVSVGCQSQNFGA-------DVC 344
CA + C NT+ F C C Y + C
Sbjct: 47 CALVPDICFSTSKVPRCVNTQPGFHCLP-CPPRYRGNQPVGVGLEAAKTEKQVCEPENPC 105
Query: 345 PDGT-RCDRNAKCTRILG---NHYACKCDNGWAGDGQFCGRDTDLDGWPDYDLACPDRKC 400
D T C ++A+C + Y C+C G+AGDG CG D+DLDGWP+ +L C
Sbjct: 106 KDKTHNCHKHAECIYLGHFSDPMYKCECQTGYAGDGLICGEDSDLDGWPNLNLVCATNAT 165
Query: 401 RKDNCVHIPNSGINNHADNCPRNANPDQRMCGHSLRIHIVFCLTVLGINNHADNCPRNAN 460
+ P+ N+ ++ ++ D G+ + DNC N
Sbjct: 166 YHCIKDNCPHLP-NSGQEDFDKDGIGDACDD----------DDDNDGVTDEKDNCQLLFN 214
Query: 461 PDQRDSDHDGIGDACDNCPRVSNPEQTDSNSNHIGDVCDSGVDTDHDGVPDPMDNCPKVA 520
P Q D D D +GD CDNCP V NP Q D+++N GD C VD D D V + DNCP V
Sbjct: 215 PRQADYDKDEVGDRCDNCPYVHNPAQIDTDNNGEGDACS--VDIDGDDVFNERDNCPYVY 272
Query: 521 NPNQLDNDRDG 531
N +Q D D DG
Sbjct: 273 NTDQRDTDGDG 283
Score = 115 bits (288), Expect = 3e-26
Identities = 90/459 (19%), Positives = 140/459 (30%), Gaps = 41/459 (8%)
Query: 111 DNPCFPGVECRDTREGP-RCMRCPDGYVGDGIHCKPGVTCNM-----RPCFQGVQCFDTV 164
NPCFPG +C +G C CP G++G+G HC+ C + + +C +T
Sbjct: 8 SNPCFPGAQCSSFPDGSWSCGFCPVGFLGNGTHCEDLDECALVPDICFSTSKVPRCVNTQ 67
Query: 165 EGYTCGPCPSGYTGDGERCQRIGGCSRNPCAQGKLNE----KTRCVRCDDIPEHPYYRCG 220
G+ C PCP Y G+ + N C + + ++
Sbjct: 68 PGFHCLPCPPRYRGNQPVGVGLEAAKTEKQVCEPENPCKDKTHNCHKHAECIYLGHFSDP 127
Query: 221 S----CPEGTTGNGTRCHDIDECDLAEPCDPRVQCTNLFPGYRCDPCPAGFTGSTGVQGV 276
C G G+G C + + D + + C Y C ++G +
Sbjct: 128 MYKCECQTGYAGDGLICGEDSDLD--GWPNLNLVCAT-NATYHCIKDNCPHLPNSGQEDF 184
Query: 277 GLEHAVRFRQTCVDIDECADGRNGGCDSNSMCTNTEGSFTCTSLCRNSYMVRNVSVGCQS 336
+ D D D ++ + C N V N +
Sbjct: 185 DKDGIGDACDDDDDNDGVTDEKDNCQLLFNPRQADYDKDEVGDRCDNCPYVHNPAQIDTD 244
Query: 337 QNFGADVCPDGTRCDRNAKCTRILGNHY-ACKCDNGWAGDGQFCGRDTDLDGWPDYDLAC 395
N D C D Y + D G G C + D+
Sbjct: 245 NNGEGDACSVDIDGDDVFNERDNCPYVYNTDQRDTDGDGVGDHCDNCPLVHNPDQTDVDN 304
Query: 396 PDRKCRKDNCVHIPNSGINNHADNCPRNANPDQR-MCGHSLRIHIVFCLTVLGINNHADN 454
+ DN I + G N+ DNCP +N +Q G+ + DN
Sbjct: 305 DLVGDQCDNNEDIDDDGHQNNQDNCPYISNANQADHDRDGQGDACDPDDDNDGVPDDRDN 364
Query: 455 CPRNANPDQRDSDHDGIGDAC-------------DNCPRVSNPEQTDSNSNHIGDVCDSG 501
C NPDQ D D DG GD C D CP + +TD + + + G
Sbjct: 365 CRLVFNPDQEDLDGDGRGDICKDDFDNDNIPDIDDVCPENNAISETDFRNFQMVPLDPKG 424
Query: 502 ---------VDTDHDGVPDPMDNCPKVANPNQLDNDRDG 531
+ + ++ P +A D
Sbjct: 425 TTQIDPNWVIRHQGKELVQTANSDPGIAVGFDEFGSVDF 463
Score = 70.4 bits (172), Expect = 2e-12
Identities = 32/55 (58%), Positives = 40/55 (72%)
Query: 1236 YQSSQKFYVMMWKKNSQVYWQTTPFRAVAEPGIQLKVVDSATGPGTMLRNSLWHT 1290
YQSS +FYV+MWK+ +Q YW+ P RA G+ LKVV+S TG G LRN+LWHT
Sbjct: 484 YQSSSRFYVVMWKQVTQTYWEDQPTRAYGYSGVSLKVVNSTTGTGEHLRNALWHT 538
Score = 53.5 bits (128), Expect = 4e-07
Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Query: 1138 PCDPRVQCTNLFPGYRCDPCPAGFTGSTGVQGVGLEHAVRFRQTCVDIDECADGRNG 1194
+C N PG+ C PCP + G GVGLE A +Q C + C D +
Sbjct: 56 STSKVPRCVNTQPGFHCLPCPPRYRG-NQPVGVGLEAAKTEKQVCEPENPCKDKTHN 111
Score = 38.1 bits (88), Expect = 0.022
Identities = 18/58 (31%), Positives = 24/58 (41%), Gaps = 15/58 (25%)
Query: 1138 PCDPRVQCTNLFPG-YRCDPCPAGFTGSTGVQGVGLEHAVRFRQTCVDIDECADGRNG 1194
PC P QC++ G + C CP GF G+ C D+DECA +
Sbjct: 10 PCFPGAQCSSFPDGSWSCGFCPVGFLGNG--------------THCEDLDECALVPDI 53
>1ux6_A Thrombospondin-1; extracellular matrix, calcium binding, L-type
lectin, glycoprotein, cell adhesion, calcium-binding,
heparin- binding; 1.9A {Homo sapiens} SCOP: b.29.1.16
g.75.1.1
Length = 350
Score = 301 bits (773), Expect = 8e-93
Identities = 153/274 (55%), Positives = 192/274 (70%), Gaps = 3/274 (1%)
Query: 862 PDQRDSDHDGIGDACDNCPRVSNPEQTDSNSNHIGDVCDSGVDTDHDGVPDPMDNCPKVA 921
P H DNCP NP+Q DS+S+ IGD CD+ D D DG + +DNCP V
Sbjct: 2 PLVHHHHH---HALADNCPLEHNPDQLDSDSDRIGDTCDNNQDIDEDGHQNNLDNCPYVP 58
Query: 922 NPNQLDNDRDGKGDECDPDLDGDGISNDEDNCRLIYNPNQDDSDGDGVGNVCDKDFDKDG 981
N NQ D+D+DGKGD CD D D DGI +D+DNCRL+ NP+Q DSDGDG G+ C DFD D
Sbjct: 59 NANQADHDKDGKGDACDHDDDNDGIPDDKDNCRLVPNPDQKDSDGDGRGDACKDDFDHDS 118
Query: 982 TPDVSDVCPNNSLVYRTDFRRYTTVILDPQGTSQIDPHWVIYNHGAEILQTMNSDPGLAI 1041
PD+ D+CP N + TDFRR+ + LDP+GTSQ DP+WV+ + G E++QT+NSDPGLA+
Sbjct: 119 VPDIDDICPENVDISETDFRRFQMIPLDPKGTSQNDPNWVVRHQGKELVQTVNSDPGLAV 178
Query: 1042 GQDKFSGVDFEGTFFVDTDIDDDYAGFVFSYQSSQKFYVMMWKKNSQVYWQTTPFRAVAE 1101
G D+F+ VDF GTFF++T+ DDDYAGFVF YQSS +FYV+MWK+ +Q YW T P RA
Sbjct: 179 GYDEFNAVDFSGTFFINTERDDDYAGFVFGYQSSSRFYVVMWKQVTQSYWDTNPTRAQGY 238
Query: 1102 PGIQLKVVDSATGPGTMLRNSLWHTGDTENQCDL 1135
G+ +KVV S TGPG LRN+LWHTG+T Q
Sbjct: 239 SGLSVKVVKSTTGPGEHLRNALWHTGNTPGQVRT 272
Score = 140 bits (355), Expect = 2e-36
Identities = 84/233 (36%), Positives = 103/233 (44%), Gaps = 50/233 (21%)
Query: 756 SDNCPYVHNPDQLDSDQDGMRDRRLGDACDNCPTDNCPYVHNPDQLDSDQDGMRDRRLGD 815
+DNCP HNPDQLDSD D +GD CDN D D+DG +
Sbjct: 13 ADNCPLEHNPDQLDSDSDR-----IGDTCDNNQ-------------DIDEDG-----HQN 49
Query: 816 ACDNCPTVPNVDQTDTDNDGTGDACDNDMDNDGINNHADNCPRNANPDQRDSDHDGIGDA 875
DNCP VPN +Q D D DG GDACD+D DNDGI + DNC NPDQ+DSD DG GDA
Sbjct: 50 NLDNCPYVPNANQADHDKDGKGDACDHDDDNDGIPDDKDNCRLVPNPDQKDSDGDGRGDA 109
Query: 876 CDNCPRVSNPEQTDSNSNHIGDVCDSGVDTDHDGVPDPMDNCPKVANPNQLDNDRDGKGD 935
C + D DHD VPD D CP+ + ++ + R +
Sbjct: 110 CKD-------------------------DFDHDSVPDIDDICPENVDISE-TDFRRFQMI 143
Query: 936 ECDPDLDGDGISNDEDNCRLIYNPNQDDSD-GDGVGNVCDKDFDKDGTPDVSD 987
DP N + +SD G VG D GT ++
Sbjct: 144 PLDPKGTSQNDPNWVVRHQGKELVQTVNSDPGLAVGYDEFNAVDFSGTFFINT 196
Score = 139 bits (351), Expect = 6e-36
Identities = 71/229 (31%), Positives = 95/229 (41%), Gaps = 42/229 (18%)
Query: 721 DNCVHIPNSGQEDADEDNIGDIC--DDDADNDGILNPSDNCPYVHNPDQLDSDQDGMRDR 778
DNC N Q D+D D IGD C + D D DG N DNCPYV N +Q D D+DG
Sbjct: 14 DNCPLEHNPDQLDSDSDRIGDTCDNNQDIDEDGHQNNLDNCPYVPNANQADHDKDGK--- 70
Query: 779 RLGDACDNCPTDNCPYVHNPDQLDSDQDGMRDRRLGDACDNCPTVPNVDQTDTDNDGTGD 838
GDACD+ D D DG + D DNC VPN DQ D+D DG GD
Sbjct: 71 --GDACDH---------------DDDNDG-----IPDDKDNCRLVPNPDQKDSDGDGRGD 108
Query: 839 ACDNDMDNDGINNHADNCPRNANPDQRDSDHDGIGDACDNCPRVSNPEQTDSNSNHIGDV 898
AC +D D+D + + D CP N + + D + ++P +
Sbjct: 109 ACKDDFDHDSVPDIDDICPENVDISETDFRRFQMIPLDPKGTSQNDPNWVVRHQG----- 163
Query: 899 CDSGVDTDHDGVPDPMDNCPKVANPNQLDNDRDGKGD-ECDPDLDGDGI 946
+ +++ P +A N D G + + D D
Sbjct: 164 ---------KELVQTVNSDPGLAVGYDEFNAVDFSGTFFINTERDDDYA 203
Score = 90.8 bits (225), Expect = 1e-19
Identities = 46/95 (48%), Positives = 52/95 (54%), Gaps = 17/95 (17%)
Query: 452 ADNCPRNANPDQRDSDHDGIGDAC---------------DNCPRVSNPEQTDSNSNHIGD 496
ADNCP NPDQ DSD D IGD C DNCP V N Q D + + GD
Sbjct: 13 ADNCPLEHNPDQLDSDSDRIGDTCDNNQDIDEDGHQNNLDNCPYVPNANQADHDKDGKGD 72
Query: 497 VCDSGVDTDHDGVPDPMDNCPKVANPNQLDNDRDG 531
CD D D+DG+PD DNC V NP+Q D+D DG
Sbjct: 73 ACDH--DDDNDGIPDDKDNCRLVPNPDQKDSDGDG 105
Score = 90.8 bits (225), Expect = 1e-19
Identities = 52/167 (31%), Positives = 67/167 (40%), Gaps = 36/167 (21%)
Query: 719 DEDNCVHIPNSGQEDADEDNIGDICDDDADNDGILNPSDNCPYVHNPDQLDSDQDGMRDR 778
+ DNC ++PN+ Q D D+D GD CD D DNDGI + DNC V NPDQ DSD DG
Sbjct: 50 NLDNCPYVPNANQADHDKDGKGDACDHDDDNDGIPDDKDNCRLVPNPDQKDSDGDG---- 105
Query: 779 RLGDACDNCPTDNCPYVHNPDQLDSDQDGMRDRRLGDACDNCPTVPNVDQTDTDN----- 833
GDAC + D D D + D D CP ++ +TD
Sbjct: 106 -RGDACKD---------------DFDHDS-----VPDIDDICPENVDISETDFRRFQMIP 144
Query: 834 ---DGTGDACDND---MDNDGINNHADNCPRNANPDQRDSDHDGIGD 874
GT N + ++ P A + D G
Sbjct: 145 LDPKGTSQNDPNWVVRHQGKELVQTVNSDPGLAVGYDEFNAVDFSGT 191
Score = 86.6 bits (214), Expect = 4e-18
Identities = 44/148 (29%), Positives = 58/148 (39%), Gaps = 34/148 (22%)
Query: 381 RDTDLDGWPDYDLACPDRKCRKDNCVHIPNSGINNHADNCPRNANPDQRMCGHSLRIHIV 440
D+D D D D I G N+ DNCP N +Q
Sbjct: 25 LDSDSDRIGDTCDNNQD----------IDEDGHQNNLDNCPYVPNANQ------------ 62
Query: 441 FCLTVLGINNHADNCPRNANPDQRDSDHDGIGDACDNCPRVSNPEQTDSNSNHIGDVCDS 500
++ D + D D+DGI D DNC V NP+Q DS+ + GD C
Sbjct: 63 -------ADHDKDGKG---DACDHDDDNDGIPDDKDNCRLVPNPDQKDSDGDGRGDACKD 112
Query: 501 GVDTDHDGVPDPMDNCPKVANPNQLDND 528
D DHD VPD D CP+ + ++ D
Sbjct: 113 --DFDHDSVPDIDDICPENVDISETDFR 138
Score = 80.4 bits (198), Expect = 4e-16
Identities = 33/55 (60%), Positives = 40/55 (72%)
Query: 1236 YQSSQKFYVMMWKKNSQVYWQTTPFRAVAEPGIQLKVVDSATGPGTMLRNSLWHT 1290
YQSS +FYV+MWK+ +Q YW T P RA G+ +KVV S TGPG LRN+LWHT
Sbjct: 209 YQSSSRFYVVMWKQVTQSYWDTNPTRAQGYSGLSVKVVKSTTGPGEHLRNALWHT 263
Score = 74.7 bits (183), Expect = 3e-14
Identities = 33/71 (46%), Positives = 41/71 (57%), Gaps = 3/71 (4%)
Query: 461 PDQRDSDHDGIGDACDNCPRVSNPEQTDSNSNHIGDVCDSGVDTDHDGVPDPMDNCPKVA 520
P H DNCP NP+Q DS+S+ IGD CD+ D D DG + +DNCP V
Sbjct: 2 PLVHHHHH---HALADNCPLEHNPDQLDSDSDRIGDTCDNNQDIDEDGHQNNLDNCPYVP 58
Query: 521 NPNQLDNDRDG 531
N NQ D+D+DG
Sbjct: 59 NANQADHDKDG 69
Score = 46.9 bits (111), Expect = 3e-05
Identities = 33/178 (18%), Positives = 55/178 (30%), Gaps = 34/178 (19%)
Query: 369 DNGWAGDGQFCGRDTDLDGWPDYDLACP----------DRKCRKDNC-VHIPNSGINNHA 417
D+ GD +D D DG + CP D+ + D C N GI +
Sbjct: 28 DSDRIGDTCDNNQDIDEDGHQNNLDNCPYVPNANQADHDKDGKGDACDHDDDNDGIPDDK 87
Query: 418 DNCPRNANPDQR-----MCGHSLRIHIVFCLTVLGINNHADNCPRNANPDQRDSDHDGIG 472
DNC NPDQ+ G + + + + D CP N + + D +
Sbjct: 88 DNCRLVPNPDQKDSDGDGRGDACKDDFDHD----SVPDIDDICPENVDISETDFRRFQMI 143
Query: 473 DACDNCPRVSNPEQTDSNSNHIGDVCDSGVDTDHDGVPDPMDNCPKVANPNQLDNDRD 530
++P + + +++ P +A N D
Sbjct: 144 PLDPKGTSQNDPNWVVRHQG--------------KELVQTVNSDPGLAVGYDEFNAVD 187
>2bou_A EGF-like module containing mucin-like hormone receptor-like 2
precursor; CD97, CD55, 7TM, calcium-binding, cell
adhesion, EGF-LI domain; 1.90A {Homo sapiens} PDB:
2bo2_A 2box_A
Length = 143
Score = 82.9 bits (205), Expect = 1e-18
Identities = 41/150 (27%), Positives = 59/150 (39%), Gaps = 21/150 (14%)
Query: 235 DIDECDLAEPCDPRVQCTNLFPGYRCDPCPAGFTGSTGVQGVGLEHAVRFRQTCVDIDEC 294
D C A C C N C C GF+ + + +TC DI+EC
Sbjct: 1 DSRGC--ARWCPQDSSCVN---ATACR-CNPGFSSFSEIITTP-------METCDDINEC 47
Query: 295 ADGRNGGCDSNSMCTNTEGSFTCTSLCRNSYMVRNVSVGCQSQNFG--ADV--CPDGT-R 349
A C S C NTEGS+ C C Y + + ++++ DV C G +
Sbjct: 48 ATLSKVSCGKFSDCWNTEGSYDCV--CSPGYEPVSGAKTFKNESENTCQDVDECSSGQHQ 105
Query: 350 CDRNAKCTRILGNHYACKCDNGWAGDGQFC 379
CD + C +G+ Y+C+C GW
Sbjct: 106 CDSSTVCFNTVGS-YSCRCRPGWKPRHGIP 134
Score = 52.9 bits (127), Expect = 4e-08
Identities = 29/149 (19%), Positives = 37/149 (24%), Gaps = 30/149 (20%)
Query: 159 QCFDTVEGYTCGPCPSGYTGDGERCQRIGGCSR--NPCAQGKLNEKTRCVRCDDIPEHPY 216
Q V C C G++ E N CA + C +
Sbjct: 11 QDSSCVNATACR-CNPGFSSFSEIITTPMETCDDINECATLSKVSCGKFSDCWNTE--GS 67
Query: 217 YRCGSCPEG----------TTGNGTRCHDIDECDLAE-PCDPRVQCTNLFPGYRCDPCPA 265
Y C C G + C D+DEC + CD C N Y C C
Sbjct: 68 YDC-VCSPGYEPVSGAKTFKNESENTCQDVDECSSGQHQCDSSTVCFNTVGSYSCR-CRP 125
Query: 266 GFTGSTGVQGVGLEHAVRFRQTCVDIDEC 294
G+ G C
Sbjct: 126 GWKPRHG------------IPNNQKDTVC 142
Score = 39.4 bits (92), Expect = 0.002
Identities = 15/57 (26%), Positives = 21/57 (36%), Gaps = 5/57 (8%)
Query: 1138 PCDPRVQCTNLFPGYRCDPCPAGFTGSTGVQGVGLEHAVRFRQTCVDIDECADGRNG 1194
C C N Y C C G+ +G TC D+DEC+ G++
Sbjct: 54 SCGKFSDCWNTEGSYDCV-CSPGYEPVSG----AKTFKNESENTCQDVDECSSGQHQ 105
Score = 37.1 bits (86), Expect = 0.009
Identities = 28/154 (18%), Positives = 39/154 (25%), Gaps = 40/154 (25%)
Query: 111 DNPCFPGVECRDTREGPRCMRCPDGYVGDGIHCK-PGVTC---------NMRPCFQGVQC 160
C C + C RC G+ P TC + C + C
Sbjct: 6 ARWCPQDSSCVNA---TAC-RCNPGFSSFSEIITTPMETCDDINECATLSKVSCGKFSDC 61
Query: 161 FDTVEGYTCGPCPSGYT----------GDGERCQRIGGCS--RNPCAQGKLNEKTRCVRC 208
++T Y C C GY CQ + CS ++ C C
Sbjct: 62 WNTEGSYDCV-CSPGYEPVSGAKTFKNESENTCQDVDECSSGQHQCDSST--------VC 112
Query: 209 DDIPEHPYYRCGSCPEGTTGNGTR--CHDIDECD 240
+ Y C C G C+
Sbjct: 113 FNTVGS--YSC-RCRPGWKPRHGIPNNQKDTVCE 143
Score = 32.9 bits (75), Expect = 0.23
Identities = 15/59 (25%), Positives = 20/59 (33%), Gaps = 11/59 (18%)
Query: 1136 AEPCDPRVQCTNLFPGYRCDPCPAGFTGSTGVQGVGLEHAVRFRQTCVDIDECADGRNG 1194
A C C N C C GF+ + + +TC DI+ECA
Sbjct: 6 ARWCPQDSSCVN---ATACR-CNPGFSSFSEIITTP-------METCDDINECATLSKV 53
Score = 31.7 bits (72), Expect = 0.69
Identities = 10/51 (19%), Positives = 11/51 (21%), Gaps = 13/51 (25%)
Query: 1138 PCDPRVQCTNLFPGYRCDPCPAGFTGSTGVQGVGLEHAVRFRQTCVDIDEC 1188
CD C N Y C C G+ G C
Sbjct: 105 QCDSSTVCFNTVGSYSCR-CRPGWKPRHG------------IPNNQKDTVC 142
>1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB
domain, disease mutation, extracellular matrix,
polymorphism, cbegf domain; 1.35A {Homo sapiens} SCOP:
g.3.11.1 g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A
Length = 162
Score = 77.4 bits (191), Expect = 1e-16
Identities = 33/172 (19%), Positives = 40/172 (23%), Gaps = 32/172 (18%)
Query: 149 CNMRPCFQGVQCFDTVEGYTCGPCPSGYTG--DGERCQRIGGCSRNPCAQGKLNEKTRCV 206
C C +T Y C CP + C +
Sbjct: 6 CLDPTTCISGNCVNTPGSYICD-CPPDFELNPTRVGCVDTRSGNCYLDI----------- 53
Query: 207 RCDDIPEHPYYRCGSCPEGTTGNGTRCHDIDECDLAEPCDPRVQCTNLFPGYRCDPCPAG 266
R C S G + C PC+ C P G
Sbjct: 54 RPRGDNGD--TAC-SNEIGVGVSKASCCCSLGKAWGTPCEMCPAVNTSEYKILC-PGGEG 109
Query: 267 FTGSTGVQGVGLEHAVRFRQTCVDIDECADGRNGGCDSNSMCTNTEGSFTCT 318
F + DIDEC + G C C NT GSF C
Sbjct: 110 FRPNPI------------TVILEDIDECQEL-PGLCQ-GGKCINTFGSFQCR 147
Score = 72.0 bits (177), Expect = 1e-14
Identities = 24/164 (14%), Positives = 42/164 (25%), Gaps = 35/164 (21%)
Query: 217 YRCGSCPEGTTGN--GTRCHDIDECDLAEPCDPRVQCTNLFPGYRCDPCPAGFTGSTGVQ 274
Y C CP N C D C ++ C G S
Sbjct: 24 YIC-DCPPDFELNPTRVGCVDTRSG----NCYLDIRPRGDNGDTACS-NEIGVGVSKA-- 75
Query: 275 GVGLEHAVRFRQTCVDIDECADGRNGGCDSNSMCTNTEGSFTCTSLCRNSYMVRNVSVGC 334
C + + C+ +E C + ++V
Sbjct: 76 -----------SCCCSLGKAW---GTPCEMCPAVNTSEYKILCP--GGEGFRPNPITVIL 119
Query: 335 QSQNFGADV--CPDGTRCDRNAKCTRILGNHYACKCDNGWAGDG 376
+ D+ C + + KC G+ + C+C G+ +
Sbjct: 120 E------DIDECQELPGLCQGGKCINTFGS-FQCRCPTGYYLNE 156
Score = 69.3 bits (170), Expect = 1e-13
Identities = 33/166 (19%), Positives = 46/166 (27%), Gaps = 19/166 (11%)
Query: 108 CATDNPCFPGVECRDTREGPRCMRCPDGYVGDGIHCKPGVTCNMRPCFQGVQCFDTVEGY 167
C C G C +T C CP + + V C+ ++
Sbjct: 6 CLDPTTCISG-NCVNTPGSYIC-DCPPDFELNPTRVGC-VDTRSGNCYLDIRPRGDNGDT 62
Query: 168 TCGPCPSGYTGDG-ERCQRIGGCSRNPCAQGKLNEKTRCVRCDDIPEHPYYRCGSCPEGT 226
C G C +G PC C + C EG
Sbjct: 63 ACS-NEIGVGVSKASCCCSLGKAWGTPCEM--------CPAVNTSEYK--ILC-PGGEGF 110
Query: 227 TGN--GTRCHDIDECDLAEPCDPRVQCTNLFPGYRCDPCPAGFTGS 270
N DIDEC +C N F ++C CP G+ +
Sbjct: 111 RPNPITVILEDIDECQELPGLCQGGKCINTFGSFQCR-CPTGYYLN 155
Score = 63.9 bits (156), Expect = 7e-12
Identities = 27/142 (19%), Positives = 35/142 (24%), Gaps = 29/142 (20%)
Query: 235 DIDECDLAEPCDPRVQCTNLFPGYRCDPCPAGFTGSTGVQGVGLEHAVRFRQTCVDIDEC 294
D++EC C C N Y CD CP F + R CVD
Sbjct: 2 DVNECLDPTTCISG-NCVNTPGSYICD-CPPDFELNP------------TRVGCVDTRSG 47
Query: 295 ADGRNGGCDSNSMCTNTEGSFTCTSLCRNSYMVRNVSVGCQSQNFGADVCPDGTRCDRNA 354
C + G C+ V S C GT C+
Sbjct: 48 N------CYLDIRPRGDNGDTACS--NEIGVGVSKASCCCS------LGKAWGTPCEMCP 93
Query: 355 KCTRILGNHYACKCDNGWAGDG 376
C G+ +
Sbjct: 94 AVNTSEYK-ILCPGGEGFRPNP 114
Score = 49.3 bits (118), Expect = 8e-07
Identities = 21/95 (22%), Positives = 31/95 (32%), Gaps = 14/95 (14%)
Query: 290 DIDECADGRNGGCDSNSMCTNTEGSFTCTSLCRNSYMVRNVSVGCQSQNFGADVCPDGTR 349
D++EC D + C NT GS+ C C + + VGC D
Sbjct: 2 DVNECLDP-TTCI--SGNCVNTPGSYICD--CPPDFELNPTRVGCV------DTRSG--N 48
Query: 350 CDRNAKCTRILGNHYACKCDNGWAGDGQFCGRDTD 384
C + + G+ AC + G C
Sbjct: 49 CYLDIRPRGDNGD-TACSNEIGVGVSKASCCCSLG 82
Score = 35.4 bits (82), Expect = 0.046
Identities = 11/62 (17%), Positives = 14/62 (22%), Gaps = 13/62 (20%)
Query: 1133 CDLAEPCDPRVQCTNLFPGYRCDPCPAGFTGSTGVQGVGLEHAVRFRQTCVDIDECADGR 1192
PC+ C P GF + DIDEC +
Sbjct: 83 KAWGTPCEMCPAVNTSEYKILC-PGGEGFRPNPI------------TVILEDIDECQELP 129
Query: 1193 NG 1194
Sbjct: 130 GL 131
Score = 30.8 bits (70), Expect = 1.8
Identities = 12/51 (23%), Positives = 14/51 (27%), Gaps = 13/51 (25%)
Query: 1144 QCTNLFPGYRCDPCPAGFTGSTGVQGVGLEHAVRFRQTCVDIDECADGRNG 1194
C N Y CD CP F + R CVD +
Sbjct: 16 NCVNTPGSYICD-CPPDFELNP------------TRVGCVDTRSGNCYLDI 53
>1lmj_A Fibrillin 1; EGF, calcium, microfibril, neonatal, marfan syndrome,
connective tissue, extracellular matrix, structural
protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1
Length = 86
Score = 66.9 bits (164), Expect = 9e-14
Identities = 26/84 (30%), Positives = 34/84 (40%), Gaps = 14/84 (16%)
Query: 235 DIDECDLAEPCDPRVQCTNLFPGYRCDPCPAGFTGSTGVQGVGLEHAVRFRQTCVDIDEC 294
DIDEC ++ R QC N + C C G+ + C+DIDEC
Sbjct: 2 DIDECRISPDLCGRGQCVNTPGDFECK-CDEGYESGF-----------MMMKNCMDIDEC 49
Query: 295 ADGRNGGCDSNSMCTNTEGSFTCT 318
C +C NTEGS+ C
Sbjct: 50 QRD-PLLCR-GGVCHNTEGSYRCE 71
Score = 42.3 bits (100), Expect = 4e-05
Identities = 19/57 (33%), Positives = 21/57 (36%), Gaps = 5/57 (8%)
Query: 217 YRCGSCPEGTTGN---GTRCHDIDECDLAEPCDPRVQCTNLFPGYRCDPCPAGFTGS 270
+ C C EG C DIDEC C N YRC+ CP G S
Sbjct: 25 FEC-KCDEGYESGFMMMKNCMDIDECQRDPLLCRGGVCHNTEGSYRCE-CPPGHQLS 79
Score = 39.2 bits (92), Expect = 5e-04
Identities = 14/64 (21%), Positives = 22/64 (34%), Gaps = 12/64 (18%)
Query: 1131 NQCDLAEPCDPRVQCTNLFPGYRCDPCPAGFTGSTGVQGVGLEHAVRFRQTCVDIDECAD 1190
++C ++ R QC N + C C G+ + C+DIDEC
Sbjct: 4 DECRISPDLCGRGQCVNTPGDFECK-CDEGYESGF-----------MMMKNCMDIDECQR 51
Query: 1191 GRNG 1194
Sbjct: 52 DPLL 55
Score = 30.3 bits (69), Expect = 0.77
Identities = 19/86 (22%), Positives = 28/86 (32%), Gaps = 16/86 (18%)
Query: 108 CATDNPCFPGVECRDTREGPRCMRCPDGYVGDGIHCKPGVTC--------NMRPCFQGVQ 159
C +C +T C +C +GY + C + C GV
Sbjct: 6 CRISPDLCGRGQCVNTPGDFEC-KCDEGYESGFM---MMKNCMDIDECQRDPLLCRGGV- 60
Query: 160 CFDTVEGYTCGPCPSGYT--GDGERC 183
C +T Y C CP G+ + C
Sbjct: 61 CHNTEGSYRCE-CPPGHQLSPNISAC 85
>2w86_A Fibrillin-1, fibrillin1; phosphoprotein, EGF-like domain, disease
mutation, craniosynostosis, extracellular matrix,
fibrillin calcium cbegf hybrid; 1.80A {Homo sapiens}
Length = 147
Score = 66.6 bits (163), Expect = 7e-13
Identities = 35/170 (20%), Positives = 45/170 (26%), Gaps = 44/170 (25%)
Query: 149 CNMRPCFQGVQCFDTVEGYTCGPCPSGYTGDGERCQRIGGCSRNPCAQGKLNEKTRCVRC 208
C PC G C ++ + C C S T D + I ++
Sbjct: 7 CESSPCING-VCKNSPGSFICE-CSSESTLDPTKTICI-----------------ETIKG 47
Query: 209 DDIPEHPYYRCGSCPEGTTGNGTRCHDIDECDLAEPCDPRVQCTNLFPGYRCDPCPAGFT 268
RC G T C + C G++
Sbjct: 48 TCWQTVIDGRCEININGATLKSQCCSSLGAAW---------GSPCTLCQVDPI-CGKGYS 97
Query: 269 GSTGVQGVGLEHAVRFRQTCVDIDECADGRNGGCDSNSMCTNTEGSFTCT 318
G C DIDEC G C N +C NT GSF C
Sbjct: 98 RIKG-------------TQCEDIDECEVF-PGVC-KNGLCVNTRGSFKCQ 132
Score = 59.3 bits (144), Expect = 2e-10
Identities = 36/163 (22%), Positives = 54/163 (33%), Gaps = 32/163 (19%)
Query: 110 TDNPCFPGVECRDTREGPRCMRCPDGYVGDGIHCKPGVTCN-MRPCFQGVQCFDTVEGYT 168
+PC GV C+++ C C D C C+ TV
Sbjct: 8 ESSPCINGV-CKNSPGSFIC-ECSSESTLDPTKT----ICIETIKG----TCWQTVIDGR 57
Query: 169 CGPCPSGYTGDGERCQRIGGCSRNPCAQGKLNEKTRCVRCDDIPEHPYYRCGSCPEGTTG 228
C +G T + C +G +PC + C +G +
Sbjct: 58 CEININGATLKSQCCSSLGAAWGSPCTLCQ------------------VDP-ICGKGYSR 98
Query: 229 -NGTRCHDIDECDLAEPCDPRVQCTNLFPGYRCDPCPAGFTGS 270
GT+C DIDEC++ C N ++C CP+G T
Sbjct: 99 IKGTQCEDIDECEVFPGVCKNGLCVNTRGSFKCQ-CPSGMTLD 140
Score = 43.1 bits (102), Expect = 9e-05
Identities = 20/146 (13%), Positives = 33/146 (22%), Gaps = 45/146 (30%)
Query: 235 DIDECDLAEPCDPRVQCTNLFPGYRCDPCPAGFTGSTGVQGVGLEHAVRFRQTCVDIDEC 294
DIDEC+ + + C N + C+ C + T + C++ +
Sbjct: 3 DIDECESSPCINGV--CKNSPGSFICE-CSSESTLDP------------TKTICIETIKG 47
Query: 295 ADGRNGGCDSNSMCTNTEGSFTCTSLCRNSYMVRNVSVGCQSQNFGADVCPDGTRCDRNA 354
C T C N +
Sbjct: 48 T------------CWQTVIDGRCEINI----------------NGATLKSQCCSSLGAAW 79
Query: 355 KCTRILGNHYACKCDNGWAG-DGQFC 379
L C G++ G C
Sbjct: 80 GSPCTLCQ-VDPICGKGYSRIKGTQC 104
Score = 37.3 bits (87), Expect = 0.007
Identities = 20/96 (20%), Positives = 26/96 (27%), Gaps = 23/96 (23%)
Query: 290 DIDECADGRNGGCDSNSMCTNTEGSFTCTSLCRNSYMVRNVSVGCQSQNFGADVCPDGTR 349
DIDEC N +C N+ GSF C C + + T
Sbjct: 3 DIDECES----SPCINGVCKNSPGSFICE--CSSESTLDP----------------TKTI 40
Query: 350 CDRNAKCTRILGN-HYACKCDNGWAGDGQFCGRDTD 384
C K T C+ + A C
Sbjct: 41 CIETIKGTCWQTVIDGRCEININGATLKSQCCSSLG 76
Score = 30.8 bits (70), Expect = 1.4
Identities = 9/69 (13%), Positives = 12/69 (17%), Gaps = 14/69 (20%)
Query: 1126 TGDTENQCDLAEPCDPRVQCTNLFPGYRCDPCPAGFTGSTGVQGVGLEHAVRFRQTCVDI 1185
+ C G++ G C DI
Sbjct: 62 INGATLKSQCCSSLGAAWGSPCTLCQVDPI-CGKGYSRIKG-------------TQCEDI 107
Query: 1186 DECADGRNG 1194
DEC
Sbjct: 108 DECEVFPGV 116
Score = 29.6 bits (67), Expect = 3.8
Identities = 6/53 (11%), Positives = 14/53 (26%), Gaps = 13/53 (24%)
Query: 1144 QCTNLFPGYRCDPCPAGFTGSTGVQGVGLEHAVRFRQTCVDIDECADGRNGGS 1196
C N + C+ C + T + C++ + +
Sbjct: 16 VCKNSPGSFICE-CSSESTLDP------------TKTICIETIKGTCWQTVID 55
>1emn_A Fibrillin; extracellular matrix, calcium-binding, glycoprotein,
repeat, signal, multigene family, disease mutation,
matrix protein; NMR {Homo sapiens} SCOP: g.3.11.1
g.3.11.1 PDB: 1emo_A
Length = 82
Score = 63.4 bits (155), Expect = 2e-12
Identities = 29/86 (33%), Positives = 35/86 (40%), Gaps = 19/86 (22%)
Query: 233 CHDIDECDLAEPCDPRVQCTNLFPGYRCDPCPAGFTGSTGVQGVGLEHAVRFRQTCVDID 292
D+DEC + C QC N YRC+ CP G+ + CVD D
Sbjct: 2 AVDMDECKEPDVCKHG-QCINTDGSYRCE-CPFGYILA--------------GNECVDTD 45
Query: 293 ECADGRNGGCDSNSMCTNTEGSFTCT 318
EC+ G N N C N G F CT
Sbjct: 46 ECSVG-NPCG--NGTCKNVIGGFECT 68
Score = 52.2 bits (126), Expect = 1e-08
Identities = 24/92 (26%), Positives = 36/92 (39%), Gaps = 17/92 (18%)
Query: 287 TCVDIDECADGRNGGCDSNSMCTNTEGSFTCTSLCRNSYMVRNVSVGCQSQNFGADV--C 344
+ VD+DEC + C NT+GS+ C C Y++ C D C
Sbjct: 1 SAVDMDECK---EPDVCKHGQCINTDGSYRCE--CPFGYILAGNE--CV------DTDEC 47
Query: 345 PDGTRCDRNAKCTRILGNHYACKCDNGWAGDG 376
G C N C ++G + C C+ G+
Sbjct: 48 SVGNPCG-NGTCKNVIGG-FECTCEEGFEPGP 77
Score = 47.6 bits (114), Expect = 6e-07
Identities = 21/56 (37%), Positives = 24/56 (42%), Gaps = 3/56 (5%)
Query: 217 YRCGSCPEGTTGNGTRCHDIDECDLAEPCDPRVQCTNLFPGYRCDPCPAGFTGSTG 272
YRC CP G G C D DEC + PC C N+ G+ C C GF
Sbjct: 26 YRC-ECPFGYILAGNECVDTDECSVGNPC-GNGTCKNVIGGFECT-CEEGFEPGPM 78
Score = 38.3 bits (90), Expect = 0.001
Identities = 20/78 (25%), Positives = 30/78 (38%), Gaps = 4/78 (5%)
Query: 108 CATDNPCFPGVECRDTREGPRCMRCPDGYVGDGIHCKPGVTCNMRPCFQGVQCFDTVEGY 167
C + C G C +T RC CP GY+ G C C++ C + + G+
Sbjct: 8 CKEPDVCKHGQ-CINTDGSYRC-ECPFGYILAGNECVDTDECSVGNPCGNGTCKNVIGGF 65
Query: 168 TCGPCPSGYTGDGER-CQ 184
C C G+ C+
Sbjct: 66 ECT-CEEGFEPGPMMTCE 82
Score = 35.3 bits (82), Expect = 0.012
Identities = 17/60 (28%), Positives = 22/60 (36%), Gaps = 15/60 (25%)
Query: 1138 PCDPRVQCTNLFPGYRCDPCPAGFTGSTGVQGVGLEHAVRFRQTCVDIDECADGRNGGSA 1197
QC N YRC+ CP G+ + CVD DEC+ G G+
Sbjct: 12 DVCKHGQCINTDGSYRCE-CPFGYILA--------------GNECVDTDECSVGNPCGNG 56
Score = 29.5 bits (67), Expect = 1.4
Identities = 11/22 (50%), Positives = 11/22 (50%), Gaps = 1/22 (4%)
Query: 699 YRCGSCPEGTTGNGTRCHDIDE 720
YRC CP G G C D DE
Sbjct: 26 YRC-ECPFGYILAGNECVDTDE 46
Score = 27.2 bits (61), Expect = 8.6
Identities = 13/36 (36%), Positives = 16/36 (44%), Gaps = 2/36 (5%)
Query: 590 CATDNPCFPGVECRDTREGPRCMRCPDGYVGDGIHC 625
C + C G C +T RC CP GY+ G C
Sbjct: 8 CKEPDVCKHGQ-CINTDGSYRC-ECPFGYILAGNEC 41
>2vj3_A Neurogenic locus notch homolog protein 1; transcription,
metal-binding, transmembrane, developmental protein,
notch signaling pathway; 2.60A {Homo sapiens} SCOP:
g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A
2rr2_A*
Length = 135
Score = 64.9 bits (159), Expect = 2e-12
Identities = 40/153 (26%), Positives = 57/153 (37%), Gaps = 37/153 (24%)
Query: 148 TCNMRPCFQGVQCFDTVEGYTCGPCPSGYTGDGERCQR-IGGCSRNPCAQGKLNEKTRCV 206
+ PC +C +T+ + C C GYTG RC+ + C NPC
Sbjct: 9 SLGANPCEHAGKCINTLGSFECQ-CLQGYTGP--RCEIDVNECVSNPCQNDA-------- 57
Query: 207 RCDDIPEHPYYRCGSCPEGTTGNGTRCH-DIDECDLAEPCDPRVQCTNLFPGYRCDPCPA 265
C D ++C C G G C + DEC + PC +C + ++C+ CP
Sbjct: 58 TCLDQIGE--FQC-ICMPGYEG--VHCEVNTDECA-SSPCLHNGRCLDKINEFQCE-CPT 110
Query: 266 GFTGSTGVQGVGLEHAVRFRQTC-VDIDECADG 297
GFTG C VD+ D
Sbjct: 111 GFTG----------------HLCQVDLHHILDA 127
Score = 59.5 bits (145), Expect = 2e-10
Identities = 38/137 (27%), Positives = 49/137 (35%), Gaps = 23/137 (16%)
Query: 112 NPCFPGVECRDTREGPRCMRCPDGYVGDGIHCKPGV-TCNMRPCFQGVQCFDTVEGYTCG 170
NPC +C +T C C GY G C+ V C PC C D + + C
Sbjct: 13 NPCEHAGKCINTLGSFECQ-CLQGYTGP--RCEIDVNECVSNPCQNDATCLDQIGEFQCI 69
Query: 171 PCPSGYTGDGERCQR-IGGCSRNPCAQGKLNEKTRCVRCDDIPEHPYYRCGSCPEGTTGN 229
C GY G C+ C+ +PC RC D ++C CP G T
Sbjct: 70 -CMPGYEGV--HCEVNTDECASSPCLHNG--------RCLDKINE--FQC-ECPTGFT-- 113
Query: 230 GTRC-HDIDECDLAEPC 245
G C D+ L
Sbjct: 114 GHLCQVDLHHI-LDAQK 129
Score = 52.2 bits (126), Expect = 5e-08
Identities = 38/154 (24%), Positives = 58/154 (37%), Gaps = 35/154 (22%)
Query: 233 CHDIDECDLA-EPCDPRVQCTNLFPGYRCDPCPAGFTGSTGVQGVGLEHAVRFRQTC-VD 290
D+DEC L PC+ +C N + C C G+TG C +D
Sbjct: 2 AQDVDECSLGANPCEHAGKCINTLGSFECQ-CLQGYTG----------------PRCEID 44
Query: 291 IDECADGRNGGCDSNSMCTNTEGSFTCTSLCRNSYMVRNVSVGCQSQNFGADVCPDGTRC 350
++EC + C +++ C + G F C C Y + C+ D C + C
Sbjct: 45 VNECV---SNPCQNDATCLDQIGEFQCI--CMPGYEGVH----CEVN---TDEC-ASSPC 91
Query: 351 DRNAKCTRILGNHYACKCDNGWAGDGQFCGRDTD 384
N +C N + C+C G+ G C D
Sbjct: 92 LHNGRCLD-KINEFQCECPTGFTGH--LCQVDLH 122
Score = 40.7 bits (96), Expect = 4e-04
Identities = 28/98 (28%), Positives = 38/98 (38%), Gaps = 14/98 (14%)
Query: 287 TCVDIDECADGRNGGCDSNSMCTNTEGSFTCTSLCRNSYMVRNVSVGCQSQNFGADVCPD 346
+ D+DEC+ G N C+ C NT GSF C C Y C+ + C
Sbjct: 1 SAQDVDECSLGANP-CEHAGKCINTLGSFECQ--CLQGYTGPR----CEID---VNEC-V 49
Query: 347 GTRCDRNAKCTRILGNHYACKCDNGWAGDGQFCGRDTD 384
C +A C + C C G+ G C +TD
Sbjct: 50 SNPCQNDATCL-DQIGEFQCICMPGYE--GVHCEVNTD 84
Score = 29.5 bits (67), Expect = 3.0
Identities = 17/54 (31%), Positives = 21/54 (38%), Gaps = 4/54 (7%)
Query: 594 NPCFPGVECRDTREGPRCMRCPDGYVGDGIHCKPGV-TCNMRPCFQGVQCFDTV 646
NPC +C +T C C GY G C+ V C PC C D +
Sbjct: 13 NPCEHAGKCINTLGSFECQ-CLQGYTGP--RCEIDVNECVSNPCQNDATCLDQI 63
Score = 29.5 bits (67), Expect = 3.4
Identities = 17/54 (31%), Positives = 21/54 (38%), Gaps = 4/54 (7%)
Query: 594 NPCFPGVECRDTREGPRCMRCPDGYVGDGIHCKPGV-TCNMRPCFQGVQCFDTV 646
NPC C D +C C GY G HC+ C PC +C D +
Sbjct: 51 NPCQNDATCLDQIGEFQC-ICMPGYEGV--HCEVNTDECASSPCLHNGRCLDKI 101
Score = 29.5 bits (67), Expect = 3.7
Identities = 14/62 (22%), Positives = 20/62 (32%), Gaps = 20/62 (32%)
Query: 1138 PCDPRVQCTNLFPGYRCDPCPAGFTGSTGVQGVGLEHAVRFRQTC-VDIDECADG--RNG 1194
PC C + ++C C G+ G C V+ DECA +
Sbjct: 52 PCQNDATCLDQIGEFQCI-CMPGYEG----------------VHCEVNTDECASSPCLHN 94
Query: 1195 GS 1196
G
Sbjct: 95 GR 96
Score = 28.7 bits (65), Expect = 6.2
Identities = 14/62 (22%), Positives = 23/62 (37%), Gaps = 20/62 (32%)
Query: 1138 PCDPRVQCTNLFPGYRCDPCPAGFTGSTGVQGVGLEHAVRFRQTC-VDIDECADG--RNG 1194
PC+ +C N + C C G+TG C +D++EC +N
Sbjct: 14 PCEHAGKCINTLGSFECQ-CLQGYTG----------------PRCEIDVNECVSNPCQND 56
Query: 1195 GS 1196
+
Sbjct: 57 AT 58
>1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A
{Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L*
Length = 195
Score = 64.4 bits (157), Expect = 9e-12
Identities = 27/164 (16%), Positives = 45/164 (27%), Gaps = 18/164 (10%)
Query: 110 TDNPCFPGVECRDTREGPRCMRCPDGYVGDGIHCKPGVTCNMRPCFQGVQCFDTVEGYTC 169
+PC +C+D C C +G+ G C++ C + C
Sbjct: 46 ETSPCQNQGKCKDGLGEYTC-TCLEGFEGKNCELFTRKLCSLDNGDCDQFCHEEQNSVVC 104
Query: 170 GPCPSGYTGDGERCQR-IGGCSRNPCAQGKLNEKTRCVRCDDIPEHPYYRCGSCPEGTTG 228
C GYT + PC + L + R V + + G
Sbjct: 105 S-CARGYTLA--DNGKACIPTGPYPCGKQTLERRKRSV----------AQA-TSSSGEAP 150
Query: 229 NGTRCHDIDECDLAEPCDPRVQCTNLFPGYRCDPCPAGFTGSTG 272
+ D DL P + + + + T G
Sbjct: 151 DSITWKPYDAADLD-PTENPFDLLDF-NQTQPERGDNNLTRIVG 192
Score = 49.0 bits (117), Expect = 2e-06
Identities = 23/172 (13%), Positives = 36/172 (20%), Gaps = 37/172 (21%)
Query: 152 RPCFQGVQCFDTVEGYTCGPCPSGYTGDGERCQRIGGCSRNPCAQGKLNEKTRCVRCDDI 211
R C + ++ + + C +PC +C D
Sbjct: 10 RECMEETCSYEEAREVFED-SDKTNEF-WNKYKDGDQCETSPCQNQG--------KCKDG 59
Query: 212 PEHPYYRCGSCPEGTTGNGTRC-HDIDECDLAEPCDPRVQCTNLFPGYRCDPCPAGFTGS 270
Y C +C EG G C + + D C C C G+T
Sbjct: 60 LGE--YTC-TCLEGFE--GKNCELFTRKLCSLDNGDCDQFCHEEQNSVVCS-CARGYTL- 112
Query: 271 TGVQGVGLEHAVRFRQTC-VDIDECADGRNGGCDSNSMCTNTEGSFTCTSLC 321
C ++ TS
Sbjct: 113 ---------------ADNGKACIPTGPYP---CGKQTLERRKRSVAQATSSS 146
Score = 48.6 bits (116), Expect = 3e-06
Identities = 14/92 (15%), Positives = 22/92 (23%), Gaps = 7/92 (7%)
Query: 108 CATDNPCFPGVECRDTREGPRCMRCPDGYVG--DGIHCKPGVTCNMRPCFQGVQCFDTVE 165
+ + C + + C C GY +G C P PC +
Sbjct: 83 LCSLDNGDCDQFCHEEQNSVVC-SCARGYTLADNGKACIP---TGPYPCGKQTLERRKRS 138
Query: 166 GYTCGPCPSGYTGDGERCQRIGGCSRNPCAQG 197
SG D + +P
Sbjct: 139 VAQAT-SSSGEAPDSITWKPYDAADLDPTENP 169
Score = 34.7 bits (80), Expect = 0.11
Identities = 23/154 (14%), Positives = 35/154 (22%), Gaps = 39/154 (25%)
Query: 235 DIDECDLAEPCDPRVQCTNLFPGYRCDPCPAGFTGSTGVQGVGLEHAVRFRQTCVDIDEC 294
++ + L C D D D+C
Sbjct: 2 EMKKGHLERECMEETCSYEEAREVFED-SDKTNEFWN---------------KYKDGDQC 45
Query: 295 ADGRNGGCDSNSMCTNTEGSFTCTSLCRNSYMVRN----VSVGCQSQNFGADVCPDGTRC 350
C + C + G +TCT C + +N C N
Sbjct: 46 ETSP---CQNQGKCKDGLGEYTCT--CLEGFEGKNCELFTRKLCSLDN-----------G 89
Query: 351 DRNAKCTRILGNHYACKCDNGWAGDGQFCGRDTD 384
D + C N C C G+ G+
Sbjct: 90 DCDQFCH-EEQNSVVCSCARGYT--LADNGKACI 120
Score = 32.4 bits (74), Expect = 0.67
Identities = 11/51 (21%), Positives = 14/51 (27%), Gaps = 1/51 (1%)
Query: 594 NPCFPGVECRDTREGPRCMRCPDGYVGDGIHCKPGVTCNMRPCFQGVQCFD 644
PC R R + G D I KP ++ P D
Sbjct: 125 YPCGKQTLERRKRSVAQA-TSSSGEAPDSITWKPYDAADLDPTENPFDLLD 174
Score = 30.5 bits (69), Expect = 2.8
Identities = 10/55 (18%), Positives = 18/55 (32%), Gaps = 1/55 (1%)
Query: 592 TDNPCFPGVECRDTREGPRCMRCPDGYVGDGIHCKPGVTCNMRPCFQGVQCFDTV 646
+PC +C+D C C +G+ G C++ C +
Sbjct: 46 ETSPCQNQGKCKDGLGEYTC-TCLEGFEGKNCELFTRKLCSLDNGDCDQFCHEEQ 99
>2w2n_E LDL receptor, low-density lipoprotein receptor; hydrolase-receptor
complex, PCSK9, proprotein converta low-density
lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB:
2w2q_E 2w2o_E 2w2p_E 2w2m_E 3gcw_E 3bps_E 3gcx_E 1hz8_A
1i0u_A 1hj7_A
Length = 107
Score = 59.3 bits (144), Expect = 9e-11
Identities = 30/120 (25%), Positives = 39/120 (32%), Gaps = 26/120 (21%)
Query: 217 YRCGSCPEGTTGNGTRCHDIDECDLAE-PCDPRVQCTNLFPGYRCDPCPAGFTGSTGVQG 275
Y E G +EC C C +L GY C CP GF
Sbjct: 13 YDI-PTTENLYFQG--AMGTNECLDNNGGCS--YVCNDLKIGYECL-CPDGFQLVAQ--- 63
Query: 276 VGLEHAVRFRQTCVDIDECADGRNGGCDSNSMCTNTEGSFTCTSLCRNSYMVRNVSVGCQ 335
+ C DIDEC D C +C N EG + C C + + + C+
Sbjct: 64 ----------RRCEDIDECQD--PDTCSQ--LCVNLEGGYKCQ--CEEGFQLDPHTKACK 107
Score = 51.6 bits (124), Expect = 5e-08
Identities = 30/113 (26%), Positives = 37/113 (32%), Gaps = 22/113 (19%)
Query: 159 QCFDTVEGYTCGPCPSGYTGDGERCQRIGGCSRNP--CAQGKLNEKTRCVRCDDIPEHPY 216
+ Y P G C N C+ C+D+
Sbjct: 5 HHHHPMSDYDI-PTTENLYFQG--AMGTNECLDNNGGCSY----------VCNDLKIG-- 49
Query: 217 YRCGSCPEG-TTGNGTRCHDIDECDLAEPCDPRVQCTNLFPGYRCDPCPAGFT 268
Y C CP+G RC DIDEC + C C NL GY+C C GF
Sbjct: 50 YEC-LCPDGFQLVAQRRCEDIDECQDPDTCS--QLCVNLEGGYKCQ-CEEGFQ 98
Score = 29.6 bits (67), Expect = 2.0
Identities = 16/49 (32%), Positives = 18/49 (36%), Gaps = 14/49 (28%)
Query: 1144 QCTNLFPGYRCDPCPAGFTGSTGVQGVGLEHAVRFRQTCVDIDECADGR 1192
C +L GY C CP GF + C DIDEC D
Sbjct: 42 VCNDLKIGYECL-CPDGFQLVAQ-------------RRCEDIDECQDPD 76
Score = 28.4 bits (64), Expect = 5.3
Identities = 7/51 (13%), Positives = 10/51 (19%), Gaps = 17/51 (33%)
Query: 1144 QCTNLFPGYRCDPCPAGFTGSTGVQGVGLEHAVRFRQTCVDIDECADGRNG 1194
+ Y P Q + +EC D G
Sbjct: 5 HHHHPMSDYDI-PTTENLYF----------------QGAMGTNECLDNNGG 38
>1z6c_A Vitamin K-dependent protein S; EGF module, blood clotting; NMR
{Homo sapiens}
Length = 87
Score = 57.3 bits (139), Expect = 2e-10
Identities = 24/101 (23%), Positives = 39/101 (38%), Gaps = 18/101 (17%)
Query: 235 DIDECDLAEPCDPRVQCTNLFPGYRCDPCPAGFTGSTGVQGVGLEHAVRFRQTCVDIDEC 294
D+DEC L C N+ + C+ CP G+ + ++C DIDEC
Sbjct: 2 DVDECSLKPSICGTAVCKNIPGDFECE-CPEGYRYNLK------------SKSCEDIDEC 48
Query: 295 ADGRNGGCDSNSMCTNTEGSFTCTSLCRNSYMVRNVSVGCQ 335
+ C +C N G +TC + + + C+
Sbjct: 49 S---ENMCAQ--LCVNYPGGYTCYCDGKKGFKLAQDQKSCE 84
Score = 36.5 bits (85), Expect = 0.006
Identities = 19/55 (34%), Positives = 20/55 (36%), Gaps = 7/55 (12%)
Query: 217 YRCGSCPEG--TTGNGTRCHDIDECDLAEPCDPRVQCTNLFPGYRCD-PCPAGFT 268
+ C CPEG C DIDEC C C N GY C GF
Sbjct: 25 FEC-ECPEGYRYNLKSKSCEDIDEC-SENMCA--QLCVNYPGGYTCYCDGKKGFK 75
Score = 33.4 bits (77), Expect = 0.055
Identities = 12/48 (25%), Positives = 21/48 (43%), Gaps = 13/48 (27%)
Query: 1144 QCTNLFPGYRCDPCPAGFTGSTGVQGVGLEHAVRFRQTCVDIDECADG 1191
C N+ + C+ CP G+ + ++C DIDEC++
Sbjct: 17 VCKNIPGDFECE-CPEGYRYNLK------------SKSCEDIDECSEN 51
Score = 32.2 bits (74), Expect = 0.14
Identities = 16/46 (34%), Positives = 20/46 (43%), Gaps = 4/46 (8%)
Query: 153 PCFQGVQCFDTVEGYTCGPCPSGYT--GDGERCQRIGGCSRNPCAQ 196
C V C + + C CP GY + C+ I CS N CAQ
Sbjct: 12 ICGTAV-CKNIPGDFECE-CPEGYRYNLKSKSCEDIDECSENMCAQ 55
>1dx5_I Thrombomodulin; serine proteinase, EGF-like domains, anticoagulant
complex, antifibrinolytic complex, hydrolase-hydrolase
inhibitor COM; HET: AR7 NDG; 2.30A {Homo sapiens} SCOP:
g.3.11.1 g.3.11.1 g.3.11.1 PDB: 3gis_X 1dqb_A* 1zaq_A
1adx_A 2adx_A
Length = 118
Score = 57.8 bits (140), Expect = 3e-10
Identities = 28/130 (21%), Positives = 38/130 (29%), Gaps = 33/130 (25%)
Query: 189 CSRNPCAQGKLNEKTRCVRCDDIPEHPYYRCGSCPEGTTGNGTRCHDIDECDLAEPCDPR 248
C R C + Y C C EG H+ C +
Sbjct: 7 CFRANCEYQCQPL-DQTS----------YLC-VCAEGFAPI---PHEPHRCQMFCNQTAC 51
Query: 249 VQCTNLFPGYRCDPCPAGFTGSTGVQGVGLEHAVRFRQTCVDIDECADGRNGGCDSNSMC 308
+ C+ CP G+ G C DIDEC + G C + +C
Sbjct: 52 PADCDPNTQASCE-CPEGYILDDG-------------FICTDIDECEN--GGFC--SGVC 93
Query: 309 TNTEGSFTCT 318
N G+F C
Sbjct: 94 HNLPGTFECI 103
Score = 47.7 bits (114), Expect = 1e-06
Identities = 31/126 (24%), Positives = 39/126 (30%), Gaps = 25/126 (19%)
Query: 149 CNMRPCFQGVQCFDTVEGYTCGPCPSGYTG---DGERCQRIGGCSRNPCAQGKLNEKTRC 205
C C Q Y C C G+ + RCQ + C
Sbjct: 7 CFRANCEYQCQPL-DQTSYLCV-CAEGFAPIPHEPHRCQMFCNQT--ACPAD-------- 54
Query: 206 VRCDDIPEHPYYRCGSCPEG-TTGNGTRCHDIDECDLAEPCDPRVQCTNLFPGYRCDPCP 264
CD + C CPEG +G C DIDEC+ C C NL + C C
Sbjct: 55 --CD---PNTQASC-ECPEGYILDDGFICTDIDECENGGFCSGV--CHNLPGTFECI-CG 105
Query: 265 AGFTGS 270
+
Sbjct: 106 PDSALA 111
Score = 33.9 bits (78), Expect = 0.080
Identities = 13/66 (19%), Positives = 20/66 (30%), Gaps = 14/66 (21%)
Query: 1126 TGDTENQCDLAEPCDPRVQCTNLFPGYRCDPCPAGFTGSTGVQGVGLEHAVRFRQTCVDI 1185
++C + + C+ CP G+ G C DI
Sbjct: 35 IPHEPHRCQMFCNQTACPADCDPNTQASCE-CPEGYILDDG-------------FICTDI 80
Query: 1186 DECADG 1191
DEC +G
Sbjct: 81 DECENG 86
Score = 29.3 bits (66), Expect = 2.8
Identities = 23/108 (21%), Positives = 32/108 (29%), Gaps = 20/108 (18%)
Query: 131 RCPDGYVGDGIHCKP-GVTCNMRPCFQGVQCFDTVEGYTCGPCPSGYT-GDGERCQRIGG 188
C +G+ + CN C D +C CP GY DG C I
Sbjct: 27 VCAEGFAPIPHEPHRCQMFCNQTACPADC---DPNTQASCE-CPEGYILDDGFICTDIDE 82
Query: 189 CSRN-PCAQGKLNEKTRCVRCDDIPEHPYYRCGSCPEGTTGNGTRCHD 235
C C+ C ++P + C C + G D
Sbjct: 83 CENGGFCSG----------VCHNLPG--TFEC-ICGPDSALAGQIGTD 117
>4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD
finger, cell adhesion, innate immunity, extracellular MA
protein; HET: NGA NAG FUC; 2.60A {Homo sapiens}
Length = 143
Score = 55.9 bits (135), Expect = 3e-09
Identities = 43/135 (31%), Positives = 55/135 (40%), Gaps = 23/135 (17%)
Query: 149 CNMRPCFQGVQCFDTVE--GYTCGPCPSGYTGD-----------GERCQRIGGCSRNPCA 195
C+ PC G C + ++C CP G+T E G C+ NPC
Sbjct: 3 CDPNPCENGGICLPGLADGSFSCE-CPDGFTDPNCSSVVEVASDEEEPTSAGPCTPNPCH 61
Query: 196 QGKLNEKTRCVRCDDIPEHPYYRCGSCPEGTTGNGTRC-HDIDECDLAEPCDPRVQCTNL 254
G E + R D Y C CP G G C H+I+EC+ EPC CT+L
Sbjct: 62 NGGTCEISEAYRGDTFIG---YVC-KCPRGFN--GIHCQHNINECE-VEPCKNGGICTDL 114
Query: 255 FPGYRCDPCPAGFTG 269
Y C+ CP F G
Sbjct: 115 VANYSCE-CPGEFMG 128
Score = 45.9 bits (109), Expect = 1e-05
Identities = 39/150 (26%), Positives = 44/150 (29%), Gaps = 39/150 (26%)
Query: 112 NPCFPGVECRDTREGP--RCMRCPDGYVGD-----------GIHCKPGVTCNMRPCFQGV 158
NPC G C C CPDG+ C PC G
Sbjct: 6 NPCENGGICLPGLADGSFSC-ECPDGFTDPNCSSVVEVASDEEEPTSAGPCTPNPCHNGG 64
Query: 159 QC-------FDTVEGYTCGPCPSGYTGDGERCQR-IGGCSRNPCAQGKLNEKTRCVRCDD 210
C DT GY C CP G+ G CQ I C PC G C D
Sbjct: 65 TCEISEAYRGDTFIGYVCK-CPRGFNGI--HCQHNINECEVEPCKNGG--------ICTD 113
Query: 211 IPEHPYYRCGSCPEGTTGNGTRC-HDIDEC 239
+ + Y C CP G C +
Sbjct: 114 LVAN--YSC-ECPGEFM--GRNCQYKGGGH 138
Score = 41.6 bits (98), Expect = 3e-04
Identities = 36/113 (31%), Positives = 47/113 (41%), Gaps = 17/113 (15%)
Query: 89 EESVDEIELPAIPIVKKPTCATDNPCFPGVECR-------DTREGPRCMRCPDGYVGDGI 141
V+ P P C NPC G C DT G C +CP G+ +GI
Sbjct: 37 SSVVEVASDEEEPTSAGP-CT-PNPCHNGGTCEISEAYRGDTFIGYVC-KCPRGF--NGI 91
Query: 142 HCKPGVT-CNMRPCFQGVQCFDTVEGYTCGPCPSGYTGDGERCQ-RIGGCSRN 192
HC+ + C + PC G C D V Y+C CP + G CQ + GG +
Sbjct: 92 HCQHNINECEVEPCKNGGICTDLVANYSCE-CPGEFMGR--NCQYKGGGHHHH 141
Score = 29.7 bits (67), Expect = 2.9
Identities = 33/154 (21%), Positives = 49/154 (31%), Gaps = 24/154 (15%)
Query: 237 DECDLAEPCDPRVQCTNLFP--GYRCDPCPAGFTGSTGVQGVGLEHAVRFRQTCVDIDEC 294
D CD PC+ C + C+ CP GFT V + C
Sbjct: 1 DICD-PNPCENGGICLPGLADGSFSCE-CPDGFTDPNCSSVVE---VASDEEEPTSAGPC 55
Query: 295 ADG--RNGG--CDSNSMCTNTEGSFTCTSLCRNSYMVRNVSVGCQSQNFGADVCPDGTRC 350
NGG S + +T + C C + + CQ + C + C
Sbjct: 56 TPNPCHNGGTCEISEAYRGDTFIGYVCK--CPRGFNGIH----CQHN---INEC-EVEPC 105
Query: 351 DRNAKCTRILGNHYACKCDNGWAGDGQFCGRDTD 384
CT L +Y+C+C + G+ C
Sbjct: 106 KNGGICTD-LVANYSCECPGEFM--GRNCQYKGG 136
>1aut_L Activated protein C; serine proteinase, plasma calcium binding,
glycoprotein, HYD hydrolase inhibitor complex, blood
clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: g.3.11.1
g.3.11.1 PDB: 3f6u_L*
Length = 114
Score = 51.6 bits (124), Expect = 5e-08
Identities = 31/135 (22%), Positives = 42/135 (31%), Gaps = 34/135 (25%)
Query: 231 TRCHDIDECD-------LAEPCDPRVQCTNLFPGYRCDPCPAGFTGSTGVQGVGLEHAVR 283
++ D D+C A C C + + CD C +G+ G R
Sbjct: 1 SKHVDGDQCLVLPLEHPCASLCCGHGTCIDGIGSFSCD-CRSGWEG-------------R 46
Query: 284 FRQTCVDIDECADGRNGGCDSNSMCTNTEGSFTCTSLCRNSYMVRNVSVGCQSQNFGADV 343
F Q V C+ NGGC C G C+ C Y + + Q A
Sbjct: 47 FCQREVSFLNCSL-DNGGCTHY--CLEEVGWRRCS--CAPGYKLGD----DLLQCHPAVK 97
Query: 344 CPDGTRCDRNAKCTR 358
P C R K
Sbjct: 98 FP----CGRPWKRME 108
Score = 47.0 bits (112), Expect = 2e-06
Identities = 20/101 (19%), Positives = 28/101 (27%), Gaps = 7/101 (6%)
Query: 108 CATDNPCFPGVECRDTREGPRCMRCPDGYVGDGI-HCKPGVTCNMRPCFQGVQCFDTVEG 166
+ C C D C C G+ G + C++ C + V
Sbjct: 16 HPCASLCCGHGTCIDGIGSFSCD-CRSGWEGRFCQREVSFLNCSLDNGGCTHYCLEEVGW 74
Query: 167 YTCGPCPSGYTGDGERCQR-IGGCSRNPCAQ-GKLNEKTRC 205
C C GY + PC + K EK R
Sbjct: 75 RRCS-CAPGYKLG--DDLLQCHPAVKFPCGRPWKRMEKKRS 112
Score = 42.4 bits (100), Expect = 7e-05
Identities = 23/106 (21%), Positives = 33/106 (31%), Gaps = 17/106 (16%)
Query: 139 DGIHCK--PGVTCNMRPCFQGVQCFDTVEGYTCGPCPSGYTGDG-ERCQRIGGCSRNPCA 195
DG C P C C D + ++C C SG+ G +R CS +
Sbjct: 5 DGDQCLVLPLEHPCASLCCGHGTCIDGIGSFSCD-CRSGWEGRFCQREVSFLNCSLDNGG 63
Query: 196 QGKLNEKTRCVRCDDIPEHPYYRCGSCPEGTTG--NGTRCHDIDEC 239
C + RC SC G + +CH +
Sbjct: 64 CT--------HYCLEEVGW--RRC-SCAPGYKLGDDLLQCHPAVKF 98
Score = 36.6 bits (85), Expect = 0.008
Identities = 15/87 (17%), Positives = 19/87 (21%), Gaps = 16/87 (18%)
Query: 217 YRCGSCPEGTTG-NGTRCHDIDECDLAEPCDPRVQCTNLFPGYRCDPCPAGFTGSTGVQG 275
+ C C G G R C L + C RC C G+
Sbjct: 35 FSC-DCRSGWEGRFCQREVSFLNCSL-DNGGCTHYCLEEVGWRRCS-CAPGYKLGDD--- 88
Query: 276 VGLEHAVRFRQTCVDIDECADGRNGGC 302
C + GR
Sbjct: 89 ---------LLQCHPAVKFPCGRPWKR 106
Score = 32.4 bits (74), Expect = 0.28
Identities = 21/103 (20%), Positives = 30/103 (29%), Gaps = 16/103 (15%)
Query: 287 TCVDIDECA-----DGRNGGCDSNSMCTNTEGSFTCTSLCRNSYMVRNVSVGCQSQNFGA 341
VD D+C C + C + GSF+C CR+ + R CQ +
Sbjct: 2 KHVDGDQCLVLPLEHPCASLCCGHGTCIDGIGSFSCD--CRSGWEGRF----CQ-REVSF 54
Query: 342 DVCPDGTRCDRNAKCTRILGNHYACKCDNGWAGDGQFCGRDTD 384
C C +G C C G+
Sbjct: 55 LNCSLDN-GGCTHYCLEEVGW-RRCSCAPGYK--LGDDLLQCH 93
Score = 30.8 bits (70), Expect = 0.97
Identities = 16/63 (25%), Positives = 21/63 (33%), Gaps = 15/63 (23%)
Query: 1133 CDLAEPCDPRVQCTNLFPGYRCDPCPAGFTGSTGVQGVGLEHAVRFRQTCVDIDECADGR 1192
A C C + + CD C +G+ G RF Q V C+
Sbjct: 16 HPCASLCCGHGTCIDGIGSFSCD-CRSGWEG-------------RFCQREVSFLNCSL-D 60
Query: 1193 NGG 1195
NGG
Sbjct: 61 NGG 63
>1x7a_L Coagulation factor IX, light chain; inhibition, blood
clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP:
g.3.11.1 g.3.11.1 PDB: 1pfx_L*
Length = 146
Score = 49.7 bits (119), Expect = 4e-07
Identities = 23/142 (16%), Positives = 31/142 (21%), Gaps = 25/142 (17%)
Query: 119 ECRDTREGPRCMR-----CPDGYVGDGIHCKPGVTCNMRPCFQGVQCFDTVEGYTCGPCP 173
EC + + R G C PC G C D + Y C C
Sbjct: 17 ECIEEKCSFEEAREVFENTEKTNEF-WKQYVDGDQCEPNPCLNGGLCKDDINSYEC-WCQ 74
Query: 174 SGYTGDGERCQR-IGGCSRNPCAQGKLNEKTRCVRCDDIPEHPYYRCGSCPEGTTGNGTR 232
G+ G C+ +N + C SC G
Sbjct: 75 VGFEGK--NCELDATCNIKNGRCKQ--------FCKTGADSK--VLC-SCTTGYR--LAP 119
Query: 233 CH-DIDECDLAEPCDPRVQCTN 253
PC +
Sbjct: 120 DQKSCKPAV-PFPCGRVSVSHS 140
Score = 49.3 bits (118), Expect = 6e-07
Identities = 21/90 (23%), Positives = 32/90 (35%), Gaps = 8/90 (8%)
Query: 110 TDNPCFPGVECRDTREGPRCMRCPDGYVGDGIHCKPGVTCNMR-PCFQGVQCFDTVEGYT 168
NPC G C+D C C G+ +G +C+ TCN++ +
Sbjct: 52 EPNPCLNGGLCKDDINSYEC-WCQVGF--EGKNCELDATCNIKNGRCKQFCKTGADSKVL 108
Query: 169 CGPCPSGYTGDGERCQR-IGGCSRNPCAQG 197
C C +GY Q+ PC +
Sbjct: 109 CS-CTTGYRLA--PDQKSCKPAVPFPCGRV 135
Score = 43.9 bits (104), Expect = 5e-05
Identities = 17/101 (16%), Positives = 27/101 (26%), Gaps = 27/101 (26%)
Query: 221 SCPEGTTGNGTRCHDIDECDLAEPCDPRVQCTNLFPGYRCDPCPAGFTGSTGVQGVGLEH 280
+ + + D D+C+ PC C + Y C C GF G
Sbjct: 34 NTEKTNEF-WKQYVDGDQCEPN-PCLNGGLCKDDINSYECW-CQVGFEG----------- 79
Query: 281 AVRFRQTC-VDIDECAD--GRNGGCDSNSMCTNTEGSFTCT 318
+ C +D C T + C+
Sbjct: 80 -----KNCELDATCNIKNGRCKQFC-----KTGADSKVLCS 110
Score = 38.9 bits (91), Expect = 0.002
Identities = 20/103 (19%), Positives = 31/103 (30%), Gaps = 20/103 (19%)
Query: 284 FRQTCVDIDECADG--RNGGCDSNSMCTNTEGSFTCTSLCRNSYMVRNVSVGCQSQNFGA 341
F + VD D+C NGG C + S+ C C+ + +N C+
Sbjct: 41 FWKQYVDGDQCEPNPCLNGGL-----CKDDINSYECW--CQVGFEGKN----CELDA--- 86
Query: 342 DVCPDGTRCDRNAKCTRILGNHYACKCDNGWAGDGQFCGRDTD 384
RC C + C C G+ +
Sbjct: 87 TCNIKNGRC--KQFCKTGADSKVLCSCTTGYR--LAPDQKSCK 125
Score = 29.6 bits (67), Expect = 3.3
Identities = 15/57 (26%), Positives = 23/57 (40%), Gaps = 3/57 (5%)
Query: 592 TDNPCFPGVECRDTREGPRCMRCPDGYVGDGIHCKPGVTCNMRPCFQGVQCFDTVFN 648
NPC G C+D C C G+ +G +C+ TCN++ C +
Sbjct: 52 EPNPCLNGGLCKDDINSYEC-WCQVGF--EGKNCELDATCNIKNGRCKQFCKTGADS 105
Score = 28.5 bits (64), Expect = 7.1
Identities = 12/57 (21%), Positives = 13/57 (22%), Gaps = 6/57 (10%)
Query: 590 CATDNPCFPGVECRDTREGPRCMRCPDGYVG--DGIHCKPGVTCNMRPCFQGVQCFD 644
C N C C GY D CKP PC +
Sbjct: 88 CNIKNGRCKQFCKTGADSKVLC-SCTTGYRLAPDQKSCKP---AVPFPCGRVSVSHS 140
>1z1y_A Ookinete surface protein PVS25; four EGF-like domains, cell
adhesion; HET: MLY; 2.00A {Plasmodium vivax} PDB: 1z27_A
1z3g_A
Length = 186
Score = 50.4 bits (119), Expect = 5e-07
Identities = 30/198 (15%), Positives = 40/198 (20%), Gaps = 31/198 (15%)
Query: 108 CATDNPCFPGVECRDTREGPRCMRCPDGYVGDGIHC----------KPGVTCNMRPCFQG 157
T + + C C +G V + G C
Sbjct: 6 AVTVDTICXNGQLVQMSNHFXC-MCNEGLVHLSENTCEEXNECXXETLGXACGEFGQCIE 64
Query: 158 VQCFDTVEGYTCGPCPSGYTGDGERCQRIGGCSRNPCAQGKLNEKTRCVRCDDIPEHPYY 217
V Y CG C GYT + C N G+ +
Sbjct: 65 NPDPAQVNMYXCG-CIEGYTLXEDTCVLDVCQYXNCGESGECIV-----EYLSEIQSAGC 118
Query: 218 RCGSCPEGTTGNGTRCHDIDECDLAE-PCDPRVQCTNLFPGYRCDPCPAGFTGSTGVQGV 276
C + C E C N+ Y C C GFT
Sbjct: 119 SCAIGXVPNPEDEXXCTXTGETACQLXCNTDNEVCXNVEGVYXCQ-CMEGFTFD------ 171
Query: 277 GLEHAVRFRQTCVDIDEC 294
C+
Sbjct: 172 ------XEXNVCLGPHHH 183
Score = 36.6 bits (83), Expect = 0.024
Identities = 28/170 (16%), Positives = 40/170 (23%), Gaps = 26/170 (15%)
Query: 217 YRCGSCPEGTTGNGTRCHDIDEC---DLAEPCDPRVQCTNL----FPGYRCDPCPAGFTG 269
+ C + C + +EC L C QC C G+T
Sbjct: 25 FXCMCNEGLVHLSENTCEEXNECXXETLGXACGEFGQCIENPDPAQVNMYXCGCIEGYTL 84
Query: 270 STGVQGVGLEHAVRFRQTCVDIDECADGRNGGCDSNSMCTNTEGSFTCTSLCRNSYMVRN 329
TCV + + S C+ V N
Sbjct: 85 XED--------------TCVLDVCQYXNCGESGECIVEYLSEIQSAGCSC---AIGXVPN 127
Query: 330 VSVGCQSQNFGADVCPDGTRCDRNAKCTRILGNHYACKCDNGWAGDGQFC 379
G C N C + G Y C+C G+ D +
Sbjct: 128 PEDEXXCTXTGETACQLXC-NTDNEVCXNVEGV-YXCQCMEGFTFDXEXN 175
Score = 35.4 bits (80), Expect = 0.056
Identities = 22/139 (15%), Positives = 32/139 (23%), Gaps = 16/139 (11%)
Query: 111 DNPCFPGVECRDTR----EGPRCMRCPDGYVGDGIHCKPGVTCNMRPCFQG---VQCFDT 163
C +C + C +GY C V G V+
Sbjct: 53 GXACGEFGQCIENPDPAQVNMYXCGCIEGYTLXEDTCVLDVCQYXNCGESGECIVEYLSE 112
Query: 164 VEGYTCGPCPSGYTGDGERCQRIGGCSRNPCAQGKLNEKTRCVRCDDIPEHPYYRCGSCP 223
++ C C G + E C + C + Y C C
Sbjct: 113 IQSAGCS-CAIGXVPNPEDEXXCTXTGETACQLXCNTDNEVCXNVEG-----VYXC-QCM 165
Query: 224 EGTTGNGTR--CHDIDECD 240
EG T + C
Sbjct: 166 EGFTFDXEXNVCLGPHHHH 184
Score = 34.6 bits (78), Expect = 0.11
Identities = 14/104 (13%), Positives = 18/104 (17%)
Query: 292 DECADGRNGGCDSNSMCTNTEGSFTCTSLCRNSYMVRNVSVGCQSQNFGADVCPDGTRCD 351
E + N F C ++ N G
Sbjct: 2 AEASAVTVDTICXNGQLVQMSNHFXCMCNEGLVHLSENTCEEXNECXXETLGXACGEFGQ 61
Query: 352 RNAKCTRILGNHYACKCDNGWAGDGQFCGRDTDLDGWPDYDLAC 395
N Y C C G+ C D C
Sbjct: 62 CIENPDPAQVNMYXCGCIEGYTLXEDTCVLDVCQYXNCGESGEC 105
Score = 29.6 bits (65), Expect = 5.4
Identities = 17/137 (12%), Positives = 34/137 (24%), Gaps = 8/137 (5%)
Query: 593 DNPCFPGVECRDTR----EGPRCMRCPDGYVGDGIHCKPGVTCNMRPCFQGVQCFDTVFN 648
C +C + C +GY C C C + +C +
Sbjct: 53 GXACGEFGQCIENPDPAQVNMYXCGCIEGYTLXEDTCVL-DVCQYXNCGESGECIVEYLS 111
Query: 649 ASIRLKVTHVVLVRLDTQEMVRDVNALVDVRATRALKASVRCDDIPEHPYYRCGSCPEGT 708
+ + + ++ + C ++ Y C C EG
Sbjct: 112 EIQSAGCSCAIGXVPNPEDEXXCTXTGETACQLXCNTDNEVCXNVE--GVYXC-QCMEGF 168
Query: 709 TGNGTRCHDIDEDNCVH 725
T + + + H
Sbjct: 169 TFDXEXNVCLGPHHHHH 185
>2vh0_B Activated factor XA light chain; serine protease, EGF-like domain,
blood coagulation, polymorphism, glycoprotein,
hydroxylation; HET: GSI; 1.7A {Homo sapiens} PDB:
1ezq_B* 1f0s_B* 1ksn_B* 1f0r_B* 1lpk_A* 1lpz_A* 1lqd_A*
1nfw_B* 1nfx_B* 1nfy_B* 2boh_A* 2cji_B* 1lpg_A* 2j34_B*
2j38_B* 2j2u_B* 2j94_B* 2j95_B* 2uwl_B* 2j4i_B* ...
Length = 134
Score = 48.8 bits (117), Expect = 8e-07
Identities = 18/91 (19%), Positives = 30/91 (32%), Gaps = 9/91 (9%)
Query: 110 TDNPCFPGVECRDTREGPRCMRCPDGYVGDGIHCKPGV--TCNMRPCFQGVQCFDTVEGY 167
+PC +C+D C C +G+ G +C+ C++ C +
Sbjct: 46 ETSPCQNQGKCKDGLGEYTC-TCLEGFEGK--NCELFTRKLCSLDNGDCDQFCHEEQNSV 102
Query: 168 TCGPCPSGYTGDGERCQR-IGGCSRNPCAQG 197
C C GYT + PC +
Sbjct: 103 VCS-CARGYTLA--DNGKACIPTGPYPCGKQ 130
Score = 48.1 bits (115), Expect = 1e-06
Identities = 25/136 (18%), Positives = 32/136 (23%), Gaps = 20/136 (14%)
Query: 112 NPCFPGVECRDTREGPRCMRCPDGYVGDGIHCKPGVTCNMRPCFQGVQCFDTVEGYTCGP 171
C + K G C PC +C D + YTC
Sbjct: 10 RECMEETCSYEEAREVFE-DSDKTNEF-WNKYKDGDQCETSPCQNQGKCKDGLGEYTCT- 66
Query: 172 CPSGYTGDGERCQR--IGGCSRNPCAQGKLNEKTRCVRCDDIPEHPYYRCGSCPEGTTGN 229
C G+ G C+ CS + C + C SC G T
Sbjct: 67 CLEGFEGK--NCELFTRKLCSLDNGDCD--------QFCHEEQNS--VVC-SCARGYTL- 112
Query: 230 GTRCHDIDECDLAEPC 245
PC
Sbjct: 113 ADNGKACIPTG-PYPC 127
Score = 46.5 bits (111), Expect = 4e-06
Identities = 19/99 (19%), Positives = 32/99 (32%), Gaps = 22/99 (22%)
Query: 221 SCPEGTTGNGTRCHDIDECDLAEPCDPRVQCTNLFPGYRCDPCPAGFTGSTGVQGVGLEH 280
+ + D D+C+ PC + +C + Y C C GF G
Sbjct: 28 DSDKTNEF-WNKYKDGDQCE-TSPCQNQGKCKDGLGEYTCT-CLEGFEG----------- 73
Query: 281 AVRFRQTC-VDIDECADGRNGGCDSNSMCTNTEGSFTCT 318
+ C + + NG C + C + S C+
Sbjct: 74 -----KNCELFTRKLCSLDNGDC--DQFCHEEQNSVVCS 105
Score = 37.3 bits (87), Expect = 0.006
Identities = 24/156 (15%), Positives = 36/156 (23%), Gaps = 43/156 (27%)
Query: 235 DIDECDLAEPCDPRVQCTNLFPGYRCDPCPAGFTGSTGVQGVGLEHAVRFRQTCVDIDEC 294
++ + L C D D D+C
Sbjct: 2 EMKKGHLERECMEETCSYEEAREVFED-SDKTNEFWN---------------KYKDGDQC 45
Query: 295 ADG--RNGGCDSNSMCTNTEGSFTCTSLCRNSYMVRN----VSVGCQSQNFGADVCPDGT 348
+N G C + G +TCT C + +N C N
Sbjct: 46 ETSPCQNQG-----KCKDGLGEYTCT--CLEGFEGKNCELFTRKLCSLDN---------- 88
Query: 349 RCDRNAKCTRILGNHYACKCDNGWAGDGQFCGRDTD 384
D + C N C C G+ G+
Sbjct: 89 -GDCDQFCHE-EQNSVVCSCARGYT--LADNGKACI 120
>2c4f_L Coagulation factor VII precursor; blood coagulation, serine
protease, EGF, EGF-like domain, GLA, receptor enzyme,
glycoprotein, hydrolase, protease; HET: CGU GLC FUC NAG
GIL; 1.72A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1
g.32.1.1 PDB: 1w2k_L* 1w0y_L* 1z6j_L* 2b8o_L* 2aer_L*
2ec9_L* 2fir_L* 2a2q_L* 1fak_L* 1o5d_L* 1wqv_L* 1wss_L*
1wtg_L* 1wun_L* 1wv7_L* 1dan_L* 2aei_L* 2b7d_L* 2f9b_L*
2flb_L* ...
Length = 142
Score = 46.9 bits (112), Expect = 4e-06
Identities = 25/133 (18%), Positives = 34/133 (25%), Gaps = 19/133 (14%)
Query: 119 ECRDTREGPRCMR----CPDGYVGDGIHCKPGVTCNMRPCFQGVQCFDTVEGYTCGPCPS 174
EC++ + R + I G C PC G C D ++ Y C C
Sbjct: 16 ECKEEQCSFEEAREIFKDAERTKLFWISYSDGDQCASSPCQNGGSCKDQLQSYICF-CLP 74
Query: 175 GYTGDGERCQR-IGGCSRNPCAQGKLNEKTRCVRCDDIPEHPYYRCGSCPEGTTGNGTRC 233
+ G C+ G C D C C EG +
Sbjct: 75 AFEGR--NCETHKDDQLICVNENG-----GCEQYCSDHTGT-KRSC-RCHEGYS--LLAD 123
Query: 234 H-DIDECDLAEPC 245
PC
Sbjct: 124 GVSCTPTV-EYPC 135
Score = 40.4 bits (95), Expect = 7e-04
Identities = 18/94 (19%), Positives = 29/94 (30%), Gaps = 12/94 (12%)
Query: 110 TDNPCFPGVECRDTREGPRCMRCPDGYVGDGIHCKPGV-TCNMRPCFQG---VQCFDTVE 165
+PC G C+D + C C + +G +C+ + G C D
Sbjct: 51 ASSPCQNGGSCKDQLQSYIC-FCLPAF--EGRNCETHKDDQLICVNENGGCEQYCSDHTG 107
Query: 166 -GYTCGPCPSGYTGDGERCQR-IGGCSRNPCAQG 197
+C C GY+ PC +
Sbjct: 108 TKRSCR-CHEGYSLL--ADGVSCTPTVEYPCGKI 138
Score = 39.2 bits (92), Expect = 0.002
Identities = 25/166 (15%), Positives = 36/166 (21%), Gaps = 73/166 (43%)
Query: 222 CPEGTTGNGTRCHDIDECDLAEPCDPRVQCTNLFPGYRCDPCPAGFTGSTGVQGVGLEHA 281
E T D D+C + PC C + Y C C F G
Sbjct: 33 DAERTKLFWISYSDGDQC-ASSPCQNGGSCKDQLQSYICF-CLPAFEG------------ 78
Query: 282 VRFRQTC-VDIDECADG--RNGGCDSNSMCTNTEGSFTCTSLCRNSYMVRNVSVGCQSQN 338
+ C D+ NGGC+
Sbjct: 79 ----RNCETHKDDQLICVNENGGCE----------------------------------- 99
Query: 339 FGADVCPDGTRCDRNAKCTRILGNHYACKCDNGWAGDGQFCGRDTD 384
C+ G +C+C G++ G
Sbjct: 100 ---------------QYCSDHTGTKRSCRCHEGYS--LLADGVSCT 128
>4aqs_A Laminin subunit beta-1; cell adhesion; HET: NAG BMA MAN FUL; 3.11A
{Mus musculus}
Length = 525
Score = 45.8 bits (108), Expect = 8e-05
Identities = 34/201 (16%), Positives = 52/201 (25%), Gaps = 20/201 (9%)
Query: 111 DNPCFPGVECRDTREGPRCMRCPDGYVGDGIHCKPGVTCNMRPCFQGVQCFDTVEGYTCG 170
+ CR +G C C D Y +P N C +C +C
Sbjct: 274 EGMVHGHCMCRHNTKGLNCELCMDFYHDL--PWRPAEGRNSNAC---KKCNCNEHSSSCH 328
Query: 171 PCPSGYTGDGERCQRIGGCSRNPCA--QGKLNEKTRCVRCDDIPEHPYYRCGSCPEGTTG 228
+ + G GG N G+ E+ + P
Sbjct: 329 FDMAVFLATGNVS---GGVCDNCQHNTMGRNCEQCKPFYFQHPERDIRDPNLCEPCTCDP 385
Query: 229 NGTRCHDIDECDLAEPCDP---RVQCTNLFPGYRCDPCPAGFTGSTGVQGVGLEHAVRFR 285
G+ I + + +C G RCD C GF + G
Sbjct: 386 AGSENGGICDGYTDFSVGLIAGQCRCKLHVEGERCDVCKEGFYDLSAEDPYG-------C 438
Query: 286 QTCVDIDECADGRNGGCDSNS 306
++C CDS +
Sbjct: 439 KSCACNPLGTIPGGNPCDSET 459
Score = 37.0 bits (85), Expect = 0.040
Identities = 23/101 (22%), Positives = 28/101 (27%), Gaps = 16/101 (15%)
Query: 107 TCATDNPCFPGVECRDTREGPRCMRCPDGYVG----DGIHCKP------GVTCNMRPCFQ 156
T + C+ EG RC C +G+ D CK G PC
Sbjct: 398 TDFSVGLIAGQCRCKLHVEGERCDVCKEGFYDLSAEDPYGCKSCACNPLGTIPGGNPCDS 457
Query: 157 GV---QCFDTVEGYTCGPCPSGYTGDGERCQRIGGCSRNPC 194
C V G C C + G GC C
Sbjct: 458 ETGYCYCKRLVTGQRCDQCLPQHWGLSNDLD---GCRPCDC 495
>2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET:
NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B*
Length = 423
Score = 43.9 bits (103), Expect = 3e-04
Identities = 41/289 (14%), Positives = 64/289 (22%), Gaps = 72/289 (24%)
Query: 132 CPDGYVGDGIHCKPGVTCNMRPCFQGVQCFDT-VEGYTCGPCPSGYTGD----------- 179
PD H +P + G F + C + G
Sbjct: 148 VPDILEVHLPHAQPQDAGVYSARYIGGNLFTSAFTRLIVRRCEAQKWGPECNHLCTACMN 207
Query: 180 ------------------GERCQR-IGGCSRNPCAQGKLNEKTRCVRCDDIPEHPYYRCG 220
G C++ + + + + + C + Y C
Sbjct: 208 NGVCHEDTGECICPPGFMGRTCEKACELHTFGRTCKERCSGQEGC-KSYVFCLPDPYGC- 265
Query: 221 SCPEGTTGNGTRCH-DIDECDLAEPCDPRVQCTNLFPGYRCDP-----CPAGFTGSTGVQ 274
SC G G +C+ C R C N G CD C G+ G
Sbjct: 266 SCATGWK--GLQCNEACHPGFYGPDCKLRCSCNN---GEMCDRFQGCLCSPGWQG----- 315
Query: 275 GVGLEHAVRFRQTCVDIDECADGRNGGCDSNSMCTNTEGSFTCTSLCRNSYMVRNVSVGC 334
C + + D G F + N +
Sbjct: 316 -----------LQC-EREGIPRMTPKIVDLPDHIEVNSGKFNPICKASGWPLPTNEEMTL 363
Query: 335 QSQNFGADVCPDGTRCDRNAKCTRILGNHYACKCDNGWAGDGQFCGRDT 383
V PDGT + K +H++ G
Sbjct: 364 --------VKPDGTVL--HPKDF-NHTDHFSVAIFTIHRILPPDSGVWV 401
Score = 32.8 bits (74), Expect = 0.79
Identities = 11/89 (12%), Positives = 19/89 (21%), Gaps = 6/89 (6%)
Query: 106 PTCATDNPCFPGVECRDTREGPRCMRCPDGYVGDGIHCKPGVTCNMRPCFQGVQCFDTVE 165
P C C G C C C G+ G + +
Sbjct: 287 PDCKLRCSCNNGEMCDRF---QGC-LCSPGWQGLQCEREGIPRMTPKIVDLPDHIEVNSG 342
Query: 166 GYTCGPCPSGYTGDGERCQRIGGCSRNPC 194
+ SG+ + + +
Sbjct: 343 KFNPICKASGWP--LPTNEEMTLVKPDGT 369
Score = 32.0 bits (72), Expect = 1.3
Identities = 31/208 (14%), Positives = 46/208 (22%), Gaps = 31/208 (14%)
Query: 220 GSCPEGTTGNGTRCHDIDECDLAEPCDPRVQCTNLFPGYRCDPCPAGFTG------STGV 273
P+ + D + T+ F C A G T
Sbjct: 146 HEVPDILEVHLPHAQPQDAGVYSARYIGGNLFTSAFTRLIVRRCEAQKWGPECNHLCTAC 205
Query: 274 QGVGLEHAVRFRQTC----------VDIDECADGRN--GGCDSNSMCTNTE----GSFTC 317
G+ H C + GR C C + + C
Sbjct: 206 MNNGVCHEDTGECICPPGFMGRTCEKACELHTFGRTCKERCSGQEGCKSYVFCLPDPYGC 265
Query: 318 TSLCRNSYMVRNVSVGCQSQNFGADVCPDGTRCDRNAKCTRILGNHYACKCDNGWAGDGQ 377
+ C + + C +G D C C+ C C C GW G
Sbjct: 266 S--CATGWKGLQCNEACHPGFYGPD-CKLRCSCNNGEMCD----RFQGCLCSPGWQ--GL 316
Query: 378 FCGRDTDLDGWPDYDLACPDRKCRKDNC 405
C R+ P +
Sbjct: 317 QCEREGIPRMTPKIVDLPDHIEVNSGKF 344
Score = 31.2 bits (70), Expect = 2.5
Identities = 24/155 (15%), Positives = 36/155 (23%), Gaps = 22/155 (14%)
Query: 106 PTCATDNPCFPGV---ECRDTREGPRC-MRCPDGYVGDG----IHCKPGVTCNM------ 151
C + C P C +G +C C G+ G C G C+
Sbjct: 250 EGCKSYVFCLPDPYGCSCATGWKGLQCNEACHPGFYGPDCKLRCSCNNGEMCDRFQGCLC 309
Query: 152 RPCFQGVQCFDTVEGYTCGPCPSGYTGDGERCQRIGGCSRNPCAQGKLNEKTRCVRCDDI 211
P +QG+QC G + A G +++
Sbjct: 310 SPGWQGLQCEREGIPRMTPKIVDL---PDHIEVNSGKFNPICKASG-----WPLPTNEEM 361
Query: 212 PEHPYYRCGSCPEGTTGNGTRCHDIDECDLAEPCD 246
P+ I P D
Sbjct: 362 TLVKPDGTVLHPKDFNHTDHFSVAIFTIHRILPPD 396
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 44.3 bits (104), Expect = 3e-04
Identities = 56/378 (14%), Positives = 110/378 (29%), Gaps = 142/378 (37%)
Query: 975 KDFDKDGTPDVSD-VCPNN------SLVYRTDFRRYTTVILDPQGTSQIDPHWVIYNHGA 1027
+ F+K P+ ++ ++ LV + F Y + +++P Q D
Sbjct: 35 EQFNKI-LPEPTEGFAADDEPTTPAELVGK--FLGYVSSLVEPSKVGQFD---------- 81
Query: 1028 EILQTMNSDPGLAIGQDKFSGVDFEGTFFVDTDIDDDYAGFVFSYQSSQKFYVMMWKKNS 1087
++L L + +FE + DI +A ++ K+
Sbjct: 82 QVLN-------LCLT-------EFENCYLEGNDI---HA-LAAKLLQENDTTLVKTKELI 123
Query: 1088 QVYWQT-----TP---------FRAVAEPGIQLKVVDSAT---GPGTM------LRNSLW 1124
+ Y P FRAV E QL G G LR L+
Sbjct: 124 KNYITARIMAKRPFDKKSNSALFRAVGEGNAQL-----VAIFGGQGNTDDYFEELR-DLY 177
Query: 1125 HT-----GDTENQCD--LAEPCDPRVQCTNLFP-GYRCD-----------PCPAGFTGST 1165
T GD L+E + +F G + P + S
Sbjct: 178 QTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQG--LNILEWLENPSNTP-DKDYLLSI 234
Query: 1166 GVQ--GVGLEHAVRFRQTC----------VDIDECADGRNGG--SALLLVRINSQAWTSR 1211
+ +G+ + T + A G + G +A+ + ++
Sbjct: 235 PISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAI----AET---- 286
Query: 1212 ELSSWIRILMTTMLDLCSGNVATFYQSSQKFYVMMWKKNSQVYW------QTTPFRAVAE 1265
SW +F+ S +K ++ ++ + P ++
Sbjct: 287 --DSW----------------ESFFVSVRKAITVL-------FFIGVRCYEAYPNTSLPP 321
Query: 1266 PGIQLKVVDSATGPGTML 1283
++ + ++ P ML
Sbjct: 322 SILEDSLENNEGVPSPML 339
Score = 36.2 bits (83), Expect = 0.084
Identities = 60/400 (15%), Positives = 112/400 (28%), Gaps = 160/400 (40%)
Query: 992 NSLVY----RTDFRRYTTVI----------LDPQGTSQIDPHWVIYNHGAEI---LQTMN 1034
N+ Y R ++ Y ++ L + +D ++ G I L+ +
Sbjct: 165 NTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAE-KVFTQGLNILEWLENPS 223
Query: 1035 SDPG---LA--------IG--Q-------DKFSGVD-------FEGTFFVDTDI------ 1061
+ P L IG Q K G +G +
Sbjct: 224 NTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAI 283
Query: 1062 --DDDYAGFVFSYQSSQKFYVMMWKKNSQVYW------QTTPFRAVAEPGIQLKVVDSAT 1113
D + F + S +K ++ ++ + P ++ ++ + ++
Sbjct: 284 AETDSWESF---FVSVRKAITVL-------FFIGVRCYEAYPNTSLPPSILEDSLENNEG 333
Query: 1114 GPGTMLRNSLWHTGDTENQCDLAE-----PCDPRVQCTNLFPGYRCDPCPAGFTGSTGVQ 1168
P ML S+ + + Q + + P +V+ + L G + V
Sbjct: 334 VPSPML--SISNLTQEQVQDYVNKTNSHLPAGKQVEIS-LVNGAKN------LV----VS 380
Query: 1169 G-----VGLEHAVRFRQTCVDIDECADGRNGGSALLLVRI-NSQAWTSRELSSWIRILMT 1222
G GL +R + +D+ RI S+ R+L R L
Sbjct: 381 GPPQSLYGLNLTLRKAKAPSGLDQS-------------RIPFSE----RKLKFSNRFLPV 423
Query: 1223 T---------------MLDLCSGNVATFYQSSQKFYV----------------------M 1245
DL NV+ F + V
Sbjct: 424 ASPFHSHLLVPASDLINKDLVKNNVS-FNAKDIQIPVYDTFDGSDLRVLSGSISERIVDC 482
Query: 1246 MWKKNSQVYWQ-TTPFRAVAEPGIQLKVVDSATGPGTMLR 1284
+ + V W+ TT F+A ++D GPG
Sbjct: 483 IIRL--PVKWETTTQFKA-------THILD--FGPGGASG 511
>1apq_A Complement protease C1R; EGF, calcium binding, serine protease; NMR
{Homo sapiens} SCOP: g.3.11.1
Length = 53
Score = 38.6 bits (90), Expect = 5e-04
Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 7/54 (12%)
Query: 289 VDIDECADGRNGGCDSNS-----MCTNTEGSFTCTSLCRNSYMVRNVSVGCQSQ 337
VD+DECA G + +C N G + C+ CR Y ++ CQ++
Sbjct: 2 VDLDECASRSKSGEEDPQPQCQHLCHNYVGGYFCS--CRPGYELQEDRHSCQAE 53
>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion,
pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo
sapiens} PDB: 3k71_B* 3k72_B*
Length = 687
Score = 42.0 bits (98), Expect = 0.001
Identities = 37/266 (13%), Positives = 61/266 (22%), Gaps = 41/266 (15%)
Query: 106 PTCATDNPCFPGV-ECRDTREGPRCMRCPDGYVGDGIHCKPGVTCNMRPCFQGVQCFDTV 164
C G+ C G C G + N C C
Sbjct: 435 SLCHGKGFLECGICRCDTGYIGKNCECQTQGRSSQELEGSCRKDNNSIICSGLGDC---- 490
Query: 165 EGYTCGPC--PSGYTGDGERCQRIGGCSRNPCAQGKLNEKTRCVRCDDIPEHPYYRCGSC 222
CG C + + C C + R +C C
Sbjct: 491 ---VCGQCLCHTSDVPGKLIYGQYCECDTINCERYNGQVCGGPGRGLCFC----GKC-RC 542
Query: 223 PEGTTGNG---TRCHDIDECDLAEPCDPRVQCTNLFPGYRCDPCPAGFTGSTGVQGVGLE 279
G G+ R + C R +C C+ C +G+ + G
Sbjct: 543 HPGFEGSACQCERTTEGCLNPRRVECSGRGRCRC----NVCE-CHSGYQLPLCQECPGCP 597
Query: 280 HAVRFRQTCVDIDECADGRNGGCDSNSMCTNTEGSFTCTSLCRNSYMVRNVSVGCQSQNF 339
+C + + G G C++ C + N G +
Sbjct: 598 SPCGKYISCAECLKFEKGPFGK--------------NCSAACPGLQLSNNPVKGRTCKER 643
Query: 340 GADVCPD---GTRCDRNAKCTRILGN 362
++ C + D I +
Sbjct: 644 DSEGCWVAYTLEQQD-GMDRYLIYVD 668
Score = 36.2 bits (83), Expect = 0.083
Identities = 28/218 (12%), Positives = 48/218 (22%), Gaps = 34/218 (15%)
Query: 160 CFDTVEGYTCGPCPSGYTGDGERCQRIGGCSRNPCAQGKLNEKTRCVRCDDIPEHPYYRC 219
C + V DG + A + E++ +R
Sbjct: 364 CSNGVTHRNQPRG----DCDGVQINVPITFQVKVTATECIQEQSFVIRALG--------F 411
Query: 220 GSCPEGTTGNGTRCHDIDECDLAEPCDPRVQCTNLFPGYRCDPCPAGFTGSTGVQGVGLE 279
C D+ C + C C G+ G
Sbjct: 412 TDIVTVQVLPQCECRCRDQSRDRSLCHGKGFLEC----GICR-CDTGYIGKNCECQTQGR 466
Query: 280 HAVRFRQTCVDIDECADGRNGGCDSNSMCTNTEGSFTCTSLCRNSYMVRNVSVG--CQSQ 337
+ +C + G C C S + + G C+
Sbjct: 467 SSQELEGSCRKDNNSIICSGLGDCVCGQCL-----------CHTSDVPGKLIYGQYCECD 515
Query: 338 NFGADVCPDGTRCDRNAKCTRILGNHYACKCDNGWAGD 375
+ +G C + G C+C G+ G
Sbjct: 516 TINCE-RYNGQVCGGPGRGLCFCGK---CRCHPGFEGS 549
Score = 31.6 bits (71), Expect = 2.3
Identities = 43/264 (16%), Positives = 62/264 (23%), Gaps = 41/264 (15%)
Query: 114 CFPGVECRDTREGPRCMRCPDGYVGDGIHCKPGVTCNMRPCFQGVQCFDTVEGYTCGPCP 173
C GV R+ G C + I V C Q G+
Sbjct: 364 CSNGVTHRNQPRG----DCDGVQINVPITF--QVKVTATECIQEQSFVIRALGF-TDIVT 416
Query: 174 SGYTGDGERCQRIGGCSRNPCAQGKLNEKTRCVRCDDIPEHPYYRCGSCPEGTTGNGTRC 233
E R R+ C E C RCD + C +G +
Sbjct: 417 VQVLPQCECRCRDQSRDRSLCHGKGFLECGIC-RCD--TGYIGKNCECQTQGRSSQELEG 473
Query: 234 HDIDECDLAEPCDPRVQCTNLFPGYRCDPCPAGFTGSTGVQGVGLEHAVRFRQTC-VDID 292
+ + + C C +C C + G Q C D
Sbjct: 474 SCRKDNN-SIICSGLGDCVC----GQCL-CHTSDVPGKLIYG----------QYCECDTI 517
Query: 293 ECADGRNGGCDSNSMCTNTEGSFTCTSLCRNSYMVRNVSVGCQ-SQNFGADVCPDGTRCD 351
C C G C C + CQ + + P C
Sbjct: 518 NCERYNGQVCGGPGRGLCFCG--KCR--CHPGFEGSA----CQCERTTEGCLNPRRVECS 569
Query: 352 RNAKCTRILGNHYACKCDNGWAGD 375
+C C+C +G+
Sbjct: 570 GRGRC-----RCNVCECHSGYQLP 588
>1tpg_A T-plasminogen activator F1-G; plasminogen activation; NMR {Homo
sapiens} SCOP: g.3.11.1 g.27.1.1 PDB: 1tpm_A 1tpn_A
Length = 91
Score = 37.8 bits (88), Expect = 0.002
Identities = 15/56 (26%), Positives = 21/56 (37%), Gaps = 7/56 (12%)
Query: 131 RCPDGYVGDGIHCKPGVTCNMRPCFQGVQCFDTVE--GYTCGPCPSGYTGDGERCQ 184
C G H P +C+ CF G C + + C CP G+ G C+
Sbjct: 35 WCNSGRAQC--HSVPVKSCSEPRCFNGGTCQQALYFSDFVCQ-CPEGFAGK--SCE 85
Score = 35.5 bits (82), Expect = 0.014
Identities = 19/97 (19%), Positives = 24/97 (24%), Gaps = 21/97 (21%)
Query: 132 CPDGYVGDGIHCKPGVTCNMRPCFQGVQCFDTVEGYTCGPCPSGYTGDGERCQRIGGCSR 191
C D +RP + + C C SG + CS
Sbjct: 6 CRDEKTQMIYQQHQ---SWLRPVLRSNRV------EYCW-CNSGRAQC--HSVPVKSCSE 53
Query: 192 NPCAQGKLNEKTRCVRCDDIPEHPYYRCGSCPEGTTG 228
C G C + C CPEG G
Sbjct: 54 PRCFNGG--------TCQQALYFSDFVC-QCPEGFAG 81
Score = 31.7 bits (72), Expect = 0.24
Identities = 13/57 (22%), Positives = 16/57 (28%), Gaps = 7/57 (12%)
Query: 217 YRCGSCPEGTTGNGTRCHDIDECDLAEPCDPRVQCTNL--FPGYRCDPCPAGFTGST 271
C C G + C C C F + C CP GF G +
Sbjct: 32 EYC-WCNSGRAQC--HSVPVKSCS-EPRCFNGGTCQQALYFSDFVCQ-CPEGFAGKS 83
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G,
beta-propeller, protein binding; 3.30A {Rattus
norvegicus}
Length = 386
Score = 41.3 bits (96), Expect = 0.002
Identities = 25/181 (13%), Positives = 44/181 (24%), Gaps = 12/181 (6%)
Query: 290 DIDECADGRNGGCDSNSMCTNTEGSFTCTSLCRNSYMVRNVSVGCQSQNFGADVCPDGTR 349
+ C NGGC C G+ CT C Y + CQ N C +
Sbjct: 2 GEENCNVN-NGGCAQK--CQMIRGAVQCT--CHTGYRLTEDGRTCQDVNE----CAEEGY 52
Query: 350 CDRNAKCTRILGNHYACKCDNGWAGDGQFCGRDTDLDGWPDYDLACPDRKCRKDNCVHIP 409
C + + + C C+ G+ D + +
Sbjct: 53 CSQGCTNSE---GAFQCWCEAGYELRPDRRSCKALGPEPVLLFANRIDIRQVLPHRSEYT 109
Query: 410 NSGINNHADNCPRNANPDQRMCGHSLRIHIVFCLTVLGINNHADNCPRNANPDQRDSDHD 469
N + + + + + + + G N +P D
Sbjct: 110 LLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWV 169
Query: 470 G 470
Sbjct: 170 H 170
Score = 35.5 bits (81), Expect = 0.10
Identities = 29/142 (20%), Positives = 43/142 (30%), Gaps = 16/142 (11%)
Query: 108 CATDNPCFPGVECRDTREGPRCMRCPDGYV--GDGIHCKPGVTC-NMRPCFQGVQCFDTV 164
C +N +C+ R +C C GY DG C+ C C Q C ++
Sbjct: 6 CNVNN-GGCAQKCQMIRGAVQC-TCHTGYRLTEDGRTCQDVNECAEEGYCSQ--GCTNSE 61
Query: 165 EGYTCGPCPSGYTGDGERCQRIGGCSRNPCAQGKLNEKTRCVRCDDIPEHPYYRCGSCPE 224
+ C C +GY +R R+ A G R D P+ +
Sbjct: 62 GAFQCW-CEAGYELRPDR--------RSCKALGPEPVLLFANRIDIRQVLPHRSEYTLLL 112
Query: 225 GTTGNGTRCHDIDECDLAEPCD 246
N +L D
Sbjct: 113 NNLENAIALDFHHRRELVFWSD 134
Score = 33.2 bits (75), Expect = 0.59
Identities = 21/119 (17%), Positives = 32/119 (26%), Gaps = 17/119 (14%)
Query: 149 CNMRPCFQGVQCFDTVEGYTCGPCPSGYT--GDGERCQRIGGCSRNP-CAQGKLNEKTRC 205
CN+ +C C C +GY DG CQ + C+ C+QG N +
Sbjct: 6 CNVNNGGCAQKCQMIRGAVQCT-CHTGYRLTEDGRTCQDVNECAEEGYCSQGCTNSE--- 61
Query: 206 VRCDDIPEHPYYRCGSCPEGTTGNGTRCHDIDECDLAEPCDPRVQCTNLFPGYRCDPCP 264
++C C G R +R +
Sbjct: 62 ---------GAFQC-WCEAGYELRPDRRSCKALGPEPVLLFANRIDIRQVLPHRSEYTL 110
Score = 30.9 bits (69), Expect = 3.0
Identities = 22/122 (18%), Positives = 35/122 (28%), Gaps = 8/122 (6%)
Query: 207 RCDDIPEHPYYRCGSCPEG--TTGNGTRCHDIDECDLAEPCDPRVQCTNLFPGYRCDPCP 264
+C I +C +C G T +G C D++EC C CTN ++C C
Sbjct: 16 KCQMIRGA--VQC-TCHTGYRLTEDGRTCQDVNECAEEGYCSQ--GCTNSEGAFQCW-CE 69
Query: 265 AGFTGSTGVQGVGLEHAVRFRQTCVDIDECADGRNGGCDSNSMCTNTEGSFTCTSLCRNS 324
AG+ + ID + + + R
Sbjct: 70 AGYELRPDRRSCKALGPEPVLLFANRIDIRQVLPHRSEYTLLLNNLENAIALDFHHRREL 129
Query: 325 YM 326
Sbjct: 130 VF 131
>2ygq_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling
pathway, WNT antagonist, MO cancer, glycosaminoglycan;
HET: PCF NAG FUC SCR; 3.95A {Homo sapiens}
Length = 324
Score = 40.6 bits (95), Expect = 0.003
Identities = 41/246 (16%), Positives = 54/246 (21%), Gaps = 71/246 (28%)
Query: 139 DGIHCKPGVTCNMRPCFQGVQCFDTVEGYTCGPCPSGYTGDGERCQRIGGCSRNPCAQGK 198
G C + + CQ+ C G
Sbjct: 105 VGFPCLGKQDGVAAFEVDVIVMNSEGNTILK-TPQNAIFFK--TCQQ--AECPGGCRNGG 159
Query: 199 LNEKTRCVRCDDIPEHPYYRCGSCPEGTTGNGTRCHDIDECDLAEPCDPRVQCTNLFPGY 258
C++ C CP+G G C ++ C C
Sbjct: 160 --------FCNE-----RRIC-ECPDGFHG--PHC---EKALCTPRCMNGGLCVT---PG 197
Query: 259 RCDPCPAGFTGSTGVQGVGLEHAVRFRQTCVDIDECADGRNGGCDSNSMCTNTEGSFTCT 318
C CP GF G C D C+ C + C C
Sbjct: 198 FCI-CPPGFYG----------------VNC-DKANCSTT----CFNGGTCFYP---GKCI 232
Query: 319 SLCRNSYMVRNVSVGCQSQNFGADVCPDGTRCDRNAKCTRILGNHYACKCDNGWAGDGQF 378
C C+ CP C KC CKC G+ GD
Sbjct: 233 --CPPGLEGEQ----CEI-----SKCPQP--CRNGGKCI----GKSKCKCSKGYQGD--L 273
Query: 379 CGRDTD 384
C +
Sbjct: 274 CSKPVC 279
>2hr7_A Insulin receptor; hormone receptor, leucine rich repeat,
transferase; HET: NAG BMA MAN FUC P33; 2.32A {Homo
sapiens}
Length = 486
Score = 40.6 bits (94), Expect = 0.003
Identities = 30/230 (13%), Positives = 54/230 (23%), Gaps = 31/230 (13%)
Query: 148 TCNMRPCFQGVQCFDTVEGYTCGPCPSGYTGDGERCQRIGGCSRNPCAQGKLNEKTRCVR 207
+ + + + CG G C +
Sbjct: 134 SRILDSVEDNHIVLNKDDNEECGDICPGTAKGKTNCPA--TVINGQFVERCWTHSHCQKV 191
Query: 208 CDDIPEHPYY--RCGSCPEGTTGNGTRCHDIDECDLAEPCDPRVQCTNLFPGYRC-DPCP 264
C I + C GN ++ D +C V C N + RC + CP
Sbjct: 192 CPTICKSHGCTAEGLCCHSECLGNCSQPDDPTKC---------VACRNFYLDGRCVETCP 242
Query: 265 AGFTGSTGVQGVGLEHAVRFRQTCVDIDECADGRNGGCDSNSMCTNTEGSF---TCTSLC 321
+ CV+ C D + C ++ + C C
Sbjct: 243 PPYYHFQD-------------WRCVNFSFCQDL-HHKCKNSRRQGCHQYVIHNNKCIPEC 288
Query: 322 RNSYMVRNVSVGCQSQNFGADVCPDGTRCDRNAKCTRILGNHYACKCDNG 371
+ Y + + ++ C ++ C NG
Sbjct: 289 PSGYTMNSSNLLCTPCLGPCPKVCHLLEGEKTIDSVTSAQELRGCTVING 338
Score = 34.4 bits (78), Expect = 0.28
Identities = 32/231 (13%), Positives = 53/231 (22%), Gaps = 28/231 (12%)
Query: 107 TCATDNPCFPGVECRDTREGPRCMRCPDGYVGDGIHCKPGVTCNMRPCFQGVQCFDTVEG 166
+ D+ + CP G +
Sbjct: 134 SRILDSVEDNHIVLNKDDNEECGDICPGTAKGKTNCPATVINGQFVERCWTHS------- 186
Query: 167 YTCGPCPSGYTGDGERCQRIGGCSRNPCAQG--KLNEKTRCVRCDDIPEHPYYRCG---- 220
+ CP+ G C G C + C + ++ T+CV C +Y G
Sbjct: 187 HCQKVCPTICKSHG--CTAEGLCCHSECLGNCSQPDDPTKCVACR-----NFYLDGRCVE 239
Query: 221 SCPEGTTGN-GTRCHDIDECD-----LAEPCDPRVQCTNLFPGYRCDPCPAGFTGSTGVQ 274
+CP RC + C + CP+G+T ++
Sbjct: 240 TCPPPYYHFQDWRCVNFSFCQDLHHKCKNSRRQGCHQYVIHNNKCIPECPSGYTMNSSNL 299
Query: 275 GVGLEHAVRFRQTCVDIDECADGRNGGCDSNSMCTNTEGSFTCTSLCRNSY 325
+ + E CT GS R
Sbjct: 300 LCTPCLGPCPKVCHLLEGEKTIDSVTSAQELRGCTVINGS--LIINIRGGN 348
>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor
complex, blood coagulation, CL PAIR of basic residues,
disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A
{Homo sapiens}
Length = 317
Score = 39.7 bits (93), Expect = 0.004
Identities = 22/120 (18%), Positives = 35/120 (29%), Gaps = 21/120 (17%)
Query: 235 DIDECDLAEPCDPRVQCTNLFPGYRCDPCPAGFTGSTGVQGVGLEHAVRFRQTC-VDIDE 293
C +++PC C + GY C C G+ G C + +E
Sbjct: 4 GGSPC-ISQPCLHNGSCQDSIWGYTCT-CSPGYEG----------------SNCELAKNE 45
Query: 294 CADGRNGGCDSNSMCTNTEGSFTCTSLCRNSYMVRNVSVGCQSQNFGADVCPDGTRCDRN 353
C R GC C + S+TC+ + Q + + D
Sbjct: 46 CHPERTDGCQHF--CLPGQESYTCSCAQGYRLGEDHKQCVPHDQCACGVLTSEKRAPDLQ 103
Score = 37.8 bits (88), Expect = 0.017
Identities = 20/90 (22%), Positives = 27/90 (30%), Gaps = 14/90 (15%)
Query: 149 CNMRPCFQGVQCFDTVEGYTCGPCPSGYTGD------GERCQRIGGCSRNPCAQGKLNEK 202
C +PC C D++ GYTC C GY G E ++ C G+ +
Sbjct: 8 CISQPCLHNGSCQDSIWGYTCT-CSPGYEGSNCELAKNECHPERTDGCQHFCLPGQESYT 66
Query: 203 TRC-------VRCDDIPEHPYYRCGSCPEG 225
C H CG
Sbjct: 67 CSCAQGYRLGEDHKQCVPHDQCACGVLTSE 96
Score = 32.4 bits (74), Expect = 0.89
Identities = 20/109 (18%), Positives = 26/109 (23%), Gaps = 13/109 (11%)
Query: 289 VDIDECADGRNGGCDSNSMCTNTEGSFTCTSLCRNSYMVRN----VSVGCQSQNFGAD-V 343
C C N C ++ +TCT C Y N + + G
Sbjct: 3 KGGSPCISQP---CLHNGSCQDSIWGYTCT--CSPGYEGSNCELAKNECHPERTDGCQHF 57
Query: 344 CPDGT---RCDRNAKCTRILGNHYACKCDNGWAGDGQFCGRDTDLDGWP 389
C G C + D G R DL P
Sbjct: 58 CLPGQESYTCSCAQGYRLGEDHKQCVPHDQCACGVLTSEKRAPDLQDLP 106
>1klo_A Laminin; glycoprotein; 2.10A {Mus musculus} SCOP: g.3.11.2 g.3.11.2
g.3.11.2 PDB: 1npe_B 1tle_A
Length = 162
Score = 38.3 bits (89), Expect = 0.004
Identities = 35/176 (19%), Positives = 48/176 (27%), Gaps = 55/176 (31%)
Query: 118 VECRDTREGPRCMRCPDGYVGD-------GIHCKP------GVTCNMRPCFQG----VQC 160
C G RC C DGY GD C+P + C + ++C
Sbjct: 21 THCPTGTAGKRCELCDDGYFGDPLGSNGPVRLCRPCQCNDNIDPNAVGNCNRLTGECLKC 80
Query: 161 FDTVEGYTCGPCPSGYTGDGERCQRIGGCSRNPCAQGKLNEKTRCVRCDDIPEHPYYRCG 220
G+ C C G+ G+ C C
Sbjct: 81 IYNTAGFYCDRCKEGFFGNPLAPNPADKCKACACN------------------------- 115
Query: 221 SCPEGTTGNGTRCHDID-ECDLAEPCDPRVQCTNLFPGYRCDPCPAGFTGSTGVQG 275
P GT + C+ + +C C P V G C C G+ QG
Sbjct: 116 --PYGTVQQQSSCNPVTGQC----QCLPHVS------GRDCGTCDPGYYNLQSGQG 159
Score = 34.0 bits (78), Expect = 0.11
Identities = 23/85 (27%), Positives = 31/85 (36%), Gaps = 17/85 (20%)
Query: 118 VECRDTREGPRCMRCPDGYVGDGIH------CKP------GVTCNMRPCFQGV---QCFD 162
++C G C RC +G+ G+ + CK G C QC
Sbjct: 78 LKCIYNTAGFYCDRCKEGFFGNPLAPNPADKCKACACNPYGTVQQQSSCNPVTGQCQCLP 137
Query: 163 TVEGYTCGPCPSGYTGD--GERCQR 185
V G CG C GY G+ C+R
Sbjct: 138 HVSGRDCGTCDPGYYNLQSGQGCER 162
Score = 28.6 bits (64), Expect = 7.7
Identities = 10/37 (27%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
Query: 600 VECRDTREGPRCMRCPDGYVGDGIHCKPGVTCNMRPC 636
++C G C RC +G+ G+ + P C + C
Sbjct: 78 LKCIYNTAGFYCDRCKEGFFGNPLAPNPADKC--KAC 112
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex,
beta propeller, cholesterol clearance, PCSK
autocatalytic cleavage; 7.01A {Homo sapiens}
Length = 791
Score = 40.2 bits (93), Expect = 0.005
Identities = 47/312 (15%), Positives = 82/312 (26%), Gaps = 29/312 (9%)
Query: 108 CATDNPCFPGVECRDTREGPRCMRCPDGYVGDGIHCKPGVTCNMRPCFQGVQCFDTVEGY 167
C +D C G D P P + + C P + C C D + +
Sbjct: 125 CDSDRDCLDG---SDEASCPVLTCGPASFQCNSSTCIPQLW----ACDNDPDCEDGSDEW 177
Query: 168 TCG-PCPSGYTGDGERCQRI-GGCSRNPCAQGKLNEKTRC---VRCDDIPEHPYYRCGSC 222
+ GD C C C ++ RC C D + +C
Sbjct: 178 PQRCRGLYVFQGDSSPCSAFEFHCLSGEC----IHSSWRCDGGPDCKDKSDEENCAVATC 233
Query: 223 PEG--TTGNGTRCHDIDECDLAEPCDPRVQCTNLFPGYRCDPCPAGFTGSTGVQGVGLEH 280
+G H +CD C C+ P F +G
Sbjct: 234 RPDEFQCSDGNCIHGSRQCDREYDCKDMSDEVGCVNVTLCEG-PNKFKCHSG-------E 285
Query: 281 AVRFRQTCVDIDECADGRNGGCDSNSMCTNTEGSFTCTSLCRNSYMVRNVSVGCQSQNFG 340
+ + C +C D + + + C+ +C + + Q
Sbjct: 286 CITLDKVCNMARDCRDWSDEPIKECGTNECLDNNGGCSHVCNDLKIGYECLCPDGFQLVA 345
Query: 341 ADVCPDGTRCDRNAKCTRILGN---HYACKCDNGWAGDGQFCGRDTDLDGWPDYDLACPD 397
C D C C+++ N Y C+C+ G+ D + +
Sbjct: 346 QRRCEDIDECQDPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHE 405
Query: 398 RKCRKDNCVHIP 409
+ +
Sbjct: 406 VRKMTLDRSEYT 417
Score = 35.2 bits (80), Expect = 0.16
Identities = 27/215 (12%), Positives = 46/215 (21%), Gaps = 6/215 (2%)
Query: 108 CATDNPCFPGVECRDTREGPRCMRCPDGYVGDGIHCKPGVTCNMRPCFQGVQCFDTVEGY 167
CA +C D +C Y CK + + + +
Sbjct: 228 CAVATCRPDEFQCSDGNCIHGSRQCDREY-----DCKDMSDEVGCVNVTLCEGPNKFKCH 282
Query: 168 TCGPCPSGYTGDGER-CQRIGGCSRNPCAQGKLNEKTRCVRCDDIPEHPYYRCGSCPEGT 226
+ + R C+ C + + Y C
Sbjct: 283 SGECITLDKVCNMARDCRDWSDEPIKECGTNECLDNNGGCSHVCNDLKIGYECLCPDGFQ 342
Query: 227 TGNGTRCHDIDECDLAEPCDPRVQCTNLFPGYRCDPCPAGFTGSTGVQGVGLEHAVRFRQ 286
RC DIDEC + C +C+ + + VG + F
Sbjct: 343 LVAQRRCEDIDECQDPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKAVGSIAYLFFTN 402
Query: 287 TCVDIDECADGRNGGCDSNSMCTNTEGSFTCTSLC 321
D ++ S
Sbjct: 403 RHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNR 437
Score = 34.0 bits (77), Expect = 0.33
Identities = 46/326 (14%), Positives = 86/326 (26%), Gaps = 28/326 (8%)
Query: 232 RCHDIDECDLAEPCDPRVQCTNLFPGYRCDPC---PAGFTGSTGVQGVGLEHAVRFRQTC 288
RCHD CD C + C PA F ++ + C
Sbjct: 112 RCHDGKCISRQFVCDSDRDCLDGSDEASCPVLTCGPASFQCNSS-------TCIPQLWAC 164
Query: 289 VDIDECADGRNGGCDSNSMCTNTEGSFTCTSLCRNSYMVRNVSVGCQSQNF---GADVCP 345
+ +C DG + C +S C +++ +S C ++ G C
Sbjct: 165 DNDPDCEDGS---DEWPQRCRGLYVFQGDSSPC-SAFEFHCLSGECIHSSWRCDGGPDCK 220
Query: 346 DGTRCDRNAKCTRILGNHYACKCDNG------WAGDGQF-CGRDTDLDGWPDYDLACPDR 398
D + + C +C +G D ++ C +D G + L
Sbjct: 221 DKSDEEN---CAVATCRPDEFQCSDGNCIHGSRQCDREYDCKDMSDEVGCVNVTLCEGPN 277
Query: 399 KCRKDNCVHIPNSGINNHADNCPRNANPDQRMCGHSLRIHIVFCLTVLGINNHADNCPRN 458
K + + I + N A +C ++ + CG + + + + +
Sbjct: 278 KFKCHSGECITLDKVCNMARDCRDWSDEPIKECGTNECLDNNGGCSHVCNDLKIGYECLC 337
Query: 459 ANPDQRDSDHDGIGDACDNCPRVSNPEQTDSNSNHIGDVCDSGVDTDHDGVPDPMDNCPK 518
+ Q + P + + + C+ G D
Sbjct: 338 PDGFQLVAQRRCEDIDECQDPDTCSQLCVNLEGGYK-CQCEEGFQLDPHTKACKAVGSIA 396
Query: 519 VANPNQLDNDRDGKSIPWAMVFLIRW 544
R LI
Sbjct: 397 YLFFTNRHEVRKMTLDRSEYTSLIPN 422
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 40.2 bits (93), Expect = 0.006
Identities = 33/218 (15%), Positives = 52/218 (23%), Gaps = 60/218 (27%)
Query: 633 MRPCFQGVQCFDTVFNASIRLKVTHVVLVRL----DTQEMVRDVNALVDVRATRALKASV 688
R F + VF S + ++L + +++ VN L + V
Sbjct: 371 YRKMFD--RLS--VFPPSA--HIPTILLSLIWFDVIKSDVMVVVNKLHK-------YSLV 417
Query: 689 RCDDIPEHPYYRCGSCPEGTTGNGTRCHDIDEDNCVHIPNSGQEDA---DEDNIGDICDD 745
E I + V + N D NI D
Sbjct: 418 EKQP-KESTIS---------------IPSIYLELKVKLENEYALHRSIVDHYNIPKTFDS 461
Query: 746 DADNDGILNPSDNCPYVH------NPDQLDSDQDGMR----DRRLGDA--CDNCPTDNCP 793
+D I D Y H N + + R D R + + N
Sbjct: 462 ---DDLIPPYLDQYFYSHIGHHLKNIEHPERM-TLFRMVFLDFRFLEQKIRHDSTAWNAS 517
Query: 794 YVHNPDQLD--------SDQDGMRDRRLGDACDNCPTV 823
D D +R + D P +
Sbjct: 518 GSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKI 555
Score = 37.1 bits (85), Expect = 0.045
Identities = 51/319 (15%), Positives = 100/319 (31%), Gaps = 105/319 (32%)
Query: 975 KDFDKDGTPDVSDVCPNNSLVYRTDFRRYTTVILDPQGTSQIDP-HWVIYNHGAEILQTM 1033
+FD DV D+ P + L + +I+ S W + + E++Q
Sbjct: 31 DNFD---CKDVQDM-PKSIL---SK-EEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQK- 81
Query: 1034 NSDPGLAIGQDKFSGVDFEGTFFVDTDIDDDYAGFV---FSYQSSQ-----KFYV----M 1081
FV+ + +Y F+ + Q + Y+
Sbjct: 82 ----------------------FVEEVLRINY-KFLMSPIKTEQRQPSMMTRMYIEQRDR 118
Query: 1082 MWKKNSQVYWQTTPFRAVAEPGIQLK------------VVDSATGPG-TMLRNSLWHTGD 1128
++ N QV+ + R +P ++L+ ++D G G T +
Sbjct: 119 LYNDN-QVFAKYNVSR--LQPYLKLRQALLELRPAKNVLIDGVLGSGKTWV--------- 166
Query: 1129 TENQCDLAEPC-DPRVQCTNLFPGY-----RCDPCPAG--------FTGSTGVQGVGLEH 1174
+ C +VQC F + C+ P +H
Sbjct: 167 ------ALDVCLSYKVQCKMDFKIFWLNLKNCN-SPETVLEMLQKLLYQIDPNWTSRSDH 219
Query: 1175 AVRFRQTCVDIDECAD----GRNGGSALLL---VRINSQAWTSRELSSWIRILMTTMLDL 1227
+ + I + + LL+ V+ N++AW + LS +IL+TT
Sbjct: 220 SSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQ-NAKAWNAFNLSC--KILLTTR--- 273
Query: 1228 CSGNVATFYQSSQKFYVMM 1246
V F ++ ++ +
Sbjct: 274 -FKQVTDFLSAATTTHISL 291
>1gl4_A Nidogen-1, entactin; immunoglobulin-like domain, extracellular
matrix; HET: EPE; 2.0A {Mus musculus} SCOP: d.22.1.2
g.3.11.5 PDB: 1h4u_A
Length = 285
Score = 39.0 bits (90), Expect = 0.007
Identities = 10/60 (16%), Positives = 19/60 (31%), Gaps = 3/60 (5%)
Query: 289 VDIDECADGRNGGCDSNSMCTNTEGSFTCTSLCRNSYMVRNVSVGCQSQNFGADVCPDGT 348
+ CA+ R+ C ++ C + F C C +Y + + G
Sbjct: 3 LAQQTCANNRHQ-CSVHAECRDYATGFCCR--CVANYTGNGRQCVAEGSPQRVNGKVKGR 59
Score = 38.6 bits (89), Expect = 0.010
Identities = 16/66 (24%), Positives = 22/66 (33%), Gaps = 4/66 (6%)
Query: 589 TCATD-NPCFPGVECRDTREGPRCMRCPDGYVGDGIHCKPGVTCNMRP--CFQGVQCFDT 645
TCA + + C ECRD G C RC Y G+G C + + +
Sbjct: 7 TCANNRHQCSVHAECRDYATGFCC-RCVANYTGNGRQCVAEGSPQRVNGKVKGRIFVGSS 65
Query: 646 VFNASI 651
Sbjct: 66 QVPVVF 71
Score = 38.2 bits (88), Expect = 0.012
Identities = 19/92 (20%), Positives = 25/92 (27%), Gaps = 7/92 (7%)
Query: 107 TCATD-NPCFPGVECRDTREGPRCMRCPDGYVGDGIHCKPGVTCNMRP--CFQGVQCFDT 163
TCA + + C ECRD G C RC Y G+G C + + +
Sbjct: 7 TCANNRHQCSVHAECRDYATGFCC-RCVANYTGNGRQCVAEGSPQRVNGKVKGRIFVGSS 65
Query: 164 VEGYTC-GPCPSGY--TGDGERCQRIGGCSRN 192
Y G I
Sbjct: 66 QVPVVFENTDLHSYVVMNHGRSYTAISTIPET 97
Score = 36.7 bits (84), Expect = 0.038
Identities = 17/103 (16%), Positives = 30/103 (29%), Gaps = 17/103 (16%)
Query: 235 DIDECDL-AEPCDPRVQCTNLFPGYRCDPCPAGFTGSTGVQGVGLEHAVRFRQTCVDIDE 293
C C +C + G+ C C A +TG+ + CV
Sbjct: 4 AQQTCANNRHQCSVHAECRDYATGFCC-RCVANYTGNG--------------RQCVAEGS 48
Query: 294 CADGRNGGCDSNSMCTNTEGSFTCTSLCRNSYMVRNVSVGCQS 336
NG +++ + +SY+V N +
Sbjct: 49 PQRV-NGKVKGRIFVGSSQVPVVFENTDLHSYVVMNHGRSYTA 90
Score = 36.3 bits (83), Expect = 0.055
Identities = 9/40 (22%), Positives = 18/40 (45%), Gaps = 2/40 (5%)
Query: 341 ADVCPDGT-RCDRNAKCTRILGNHYACKCDNGWAGDGQFC 379
C + +C +A+C + C+C + G+G+ C
Sbjct: 5 QQTCANNRHQCSVHAECRDYAT-GFCCRCVANYTGNGRQC 43
Score = 29.7 bits (66), Expect = 5.5
Identities = 10/52 (19%), Positives = 17/52 (32%), Gaps = 6/52 (11%)
Query: 189 CSRNPCAQGKLNEKTRCVRCDD-IPEHPYYRCGSCPEGTTGNGTRCHDIDEC 239
++ CA + +C + + C C TGNG +C
Sbjct: 3 LAQQTCANNR----HQCSVHAECRDYATGFCC-RCVANYTGNGRQCVAEGSP 49
>2vj2_A Jagged-1; signalling, polymorphism, glycoprotein, extracellular,
developmental protein, notch signaling pathway, EGF,
DSL, notch, calcium, membrane; 2.50A {Homo sapiens} PDB:
2kb9_A
Length = 169
Score = 37.3 bits (87), Expect = 0.013
Identities = 34/228 (14%), Positives = 50/228 (21%), Gaps = 65/228 (28%)
Query: 149 CNMRPCFQGVQCFDTVEGYTCGPCPSGYTGDGERCQRIGGCSRNPCAQGKLNEKTRCVRC 208
C Y G C + C G C
Sbjct: 2 RGSHHHHHHGSI---EGRSAVT-CDDYYYGF--GCNKF--CRPRDDFFG-------HYAC 46
Query: 209 DDIPEHPYYRCGSCPEGTTGNGTRCH-DIDECDLAEPCDPRVQCTNLFPGYRCDPCPAGF 267
D +C EG G C+ I C C C G+
Sbjct: 47 DQN-----GNK-TCMEGWMG--PECNRAICRQG---CSPKHGSCKL---PGDCR-CQYGW 91
Query: 268 TGSTGVQGVGLEHAVRFRQTCVDIDECADGRNGGCDSNSMCTNTEGSFTCTSLCRNSYMV 327
G C D+C + +C + C C ++
Sbjct: 92 QG----------------LYC---DKCI---PHPGCVHGICNE---PWQCL--CETNWGG 124
Query: 328 RNVSVGCQSQNFGADVCPDGTRCDRNAKCTRILGNHYACKCDNGWAGD 375
+ C + C C C+ + Y C C G++G
Sbjct: 125 QL----CDKD---LNYCGTHQPCLNGGTCSNTGPDKYQCSCPEGYSGP 165
Score = 34.6 bits (80), Expect = 0.078
Identities = 32/178 (17%), Positives = 49/178 (27%), Gaps = 63/178 (35%)
Query: 108 CATDNPCFPGVECRDTREGPRCMRCPDGYVGD--------------GIHCKPGVTCNMRP 153
C + F C C +G++G CK C +
Sbjct: 34 CRPRDDFFGHYACDQN---GNK-TCMEGWMGPECNRAICRQGCSPKHGSCKLPGDCRCQY 89
Query: 154 CFQGVQCFDTVEGYTCGPCPSGYTGDGERCQRIGGCSRNPCAQGKLNEKTRCVRCDDIPE 213
+QG+ C C +P C
Sbjct: 90 GWQGLYCDK--------------------------CIPHPGCVH-----GICNEP----- 113
Query: 214 HPYYRCGSCPEGTTGNGTRC-HDIDECDLAEPCDPRVQCTNLFPG-YRCDPCPAGFTG 269
++C C G C D++ C +PC C+N P Y+C CP G++G
Sbjct: 114 ---WQC-LCETNWG--GQLCDKDLNYCGTHQPCLNGGTCSNTGPDKYQCS-CPEGYSG 164
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 36.5 bits (83), Expect = 0.020
Identities = 12/40 (30%), Positives = 18/40 (45%), Gaps = 14/40 (35%)
Query: 68 QSLKKMFDSMKNPQMRLRKTDEESVDEIELPAIPIVKKPT 107
Q+LKK+ Q L+ ++S PA+ I K T
Sbjct: 20 QALKKL-------QASLKLYADDSA-----PALAI--KAT 45
>3u3p_A Tumor necrosis factor receptor superfamily member; trigger
apoptosis, apoptosis; 2.09A {Homo sapiens} PDB: 3u3q_A
3u3s_A 3u3t_A 3u3v_A 3qo4_A
Length = 313
Score = 37.2 bits (85), Expect = 0.029
Identities = 24/168 (14%), Positives = 37/168 (22%), Gaps = 25/168 (14%)
Query: 108 CATDNPCFPGVECRDTREGPRCMRCPDGYVGDGIHCKPGVTCNMRPCFQGVQCFDTVEGY 167
C+ P + R CP G C P C + + E
Sbjct: 68 CSQPCPWPMIEKLPCAALTDRECTCPPGMFQSNATCAPHTVCP--VGWGVRKKGTETEDV 125
Query: 168 TCGPCPSGY----TGDGERCQRIGGCSRNPCAQGKLNEKTRCVRCDDIPEHPYYRCGSCP 223
C C G +C+ + C L + D CG+ P
Sbjct: 126 RCKQCARGTFSDVPSSVMKCKA---YTD--CLSQNLVVIKPGTKETDN------VCGTLP 174
Query: 224 EGTTGNGTRCHDIDECDLAEPCDPRVQCTNLFPGYRCDPCPAGFTGST 271
++ PR + P G +
Sbjct: 175 SFSSST--------SPSPGTAIFPRPEHMETHEVPSSTYVPKGMNSTE 214
>3ghm_A A disintegrin and metalloproteinase with thrombos motifs 13;
thrombospondin type-1 motif, beta sandwich, hydrolase;
HET: NAG FUC BGC; 2.60A {Homo sapiens} PDB: 3ghn_A*
Length = 410
Score = 37.2 bits (85), Expect = 0.032
Identities = 23/140 (16%), Positives = 30/140 (21%), Gaps = 12/140 (8%)
Query: 108 CATDNPCFPGVECRDTREGP-RCMRCPDGYVGDGIHCKPGVTCNMRP--------CFQGV 158
C F +C T P R + G + F
Sbjct: 154 CEKTQLEFMSQQCARTDGQPLRSSPGGASFYHWGAAVPHSQGDALCRHMCRAIGESFIMK 213
Query: 159 QCFDTVEGYTCGPCPSGYTGDGERCQRIGGCSRNPCAQ--GKLNEKTRCVRCDDIPEHPY 216
+ ++G C P G C G C C RC C
Sbjct: 214 RGDSFLDGTRCMPSGPREDGTLSLCVL-GSCRTFGCDGRMDSQQVWDRCQVCGGDNSTCS 272
Query: 217 YRCGSCPEGTTGNGTRCHDI 236
R GS G +
Sbjct: 273 PRKGSFTAGRAREYVTFLTV 292
Score = 32.2 bits (72), Expect = 1.1
Identities = 33/222 (14%), Positives = 51/222 (22%), Gaps = 11/222 (4%)
Query: 113 PCFPGVECRDTREGPRCMRCPDGYVGDGIHCKPGVTCNMRPCFQGVQCFDTVEGYTCGPC 172
C C R P V + R C GV + P
Sbjct: 75 ECGVEKWCSKGRCRSLVELTPIAAVHGRWSSWGPRSPCSRSCGGGVV-TRRRQCNNPRPA 133
Query: 173 PSGYTGDGERCQRIGGCSRNPCAQGKLNEKTRCVRCDDIPEHPYYRCG------SCPEGT 226
G G + C+ C + +L +C P
Sbjct: 134 FGGRACVGAD-LQAEMCNTQACEKTQLE--FMSQQCARTDGQPLRSSPGGASFYHWGAAV 190
Query: 227 TGNGTRCHDIDECDLAEPCDPRVQCTNLFPGYRCDPCPAGFTGSTGVQGVGLEHAVRFRQ 286
+ C + + G RC P G+ + +G
Sbjct: 191 PHSQGDALCRHMCRAIGESFIMKRGDSFLDGTRCMPSGPREDGTLSLCVLGSCRTFG-CD 249
Query: 287 TCVDIDECADGRNGGCDSNSMCTNTEGSFTCTSLCRNSYMVR 328
+D + D NS C+ +GSFT +
Sbjct: 250 GRMDSQQVWDRCQVCGGDNSTCSPRKGSFTAGRAREYVTFLT 291
>1igr_A Insulin-like growth factor receptor 1; hormone receptor, insulin
receptor family; HET: NAG FUC BMA MAN; 2.60A {Homo
sapiens} SCOP: c.10.2.5 c.10.2.5 g.3.9.1
Length = 478
Score = 37.1 bits (85), Expect = 0.039
Identities = 31/229 (13%), Positives = 47/229 (20%), Gaps = 29/229 (12%)
Query: 148 TCNMRPCFQGVQCFDTVEGYTCGPCPSGYTGDGERCQR-IGGCSRNPCAQGKLNEKTRCV 206
T + V V C G E N
Sbjct: 124 TVDWSLILDAVSNNYIVGNKPPKECGDLCPGTMEEKPMCEKTTINNEYNYRCWTTNRCQK 183
Query: 207 RCDDIPEHPYY--RCGSCPEGTTGNGTRCHDIDECDLAEPCDPRVQCTNLFPGYRC-DPC 263
C C G+ + + C V C + + C C
Sbjct: 184 MCPSTCGKRACTENNECCHPECLGSCSAPDNDTAC---------VACRHYYYAGVCVPAC 234
Query: 264 PAGFTGSTGVQGVGLEHAVRFRQTCVDIDECADGRNGGCDSNSMCTNTEGSFTCTSLCRN 323
P G CVD D CA+ S+S C C +
Sbjct: 235 PPNTYRFEG-------------WRCVDRDFCANI-LSAESSDSEGFVIHDG-ECMQECPS 279
Query: 324 SYM-VRNVSVGCQSQNFGADVCPDGTRCDRNAKCTRILGNHYACKCDNG 371
++ + S+ C + + + C G
Sbjct: 280 GFIRNGSQSMYCIPCEGPCPKVCEEEKKTKTIDSVTSAQMLQGCTIFKG 328
Score = 35.2 bits (80), Expect = 0.15
Identities = 35/213 (16%), Positives = 51/213 (23%), Gaps = 19/213 (8%)
Query: 129 CMRCPDGYVGDGIHCKPGVTCNMRPCFQGVQCFDTVEGYTCGPCPSGYTGDGERCQRIGG 188
C D G + + CPS C
Sbjct: 145 PKECGDLCPGTMEEKPMCEKTTINNEYN---YRCWTTNRCQKMCPSTCGKRA--CTENNE 199
Query: 189 CSRNPCAQG--KLNEKTRCVRCDDIPEHPYYRCG----SCPEGT-TGNGTRCHDIDECDL 241
C C + T CV C YY G +CP T G RC D D C
Sbjct: 200 CCHPECLGSCSAPDNDTACVACR-----HYYYAGVCVPACPPNTYRFEGWRCVDRDFCAN 254
Query: 242 AEPCDPRVQCTNLFPGYRCDP-CPAGFTGSTGVQGVGLEHAVRFRQTCVDIDECAD-GRN 299
+ + C CP+GF + + + C + +
Sbjct: 255 ILSAESSDSEGFVIHDGECMQECPSGFIRNGSQSMYCIPCEGPCPKVCEEEKKTKTIDSV 314
Query: 300 GGCDSNSMCTNTEGSFTCTSLCRNSYMVRNVSV 332
CT +G+ N+ +
Sbjct: 315 TSAQMLQGCTIFKGNLLINIRRGNNIASELENF 347
Score = 32.9 bits (74), Expect = 0.87
Identities = 25/140 (17%), Positives = 43/140 (30%), Gaps = 5/140 (3%)
Query: 106 PTCATDNPCFPGVECRDTREGPRCM-RCPDG-YVGDGIHCKPGVTC--NMRPCFQGVQCF 161
+C+ + V CR C+ CP Y +G C C + + F
Sbjct: 207 GSCSAPDNDTACVACRHYYYAGVCVPACPPNTYRFEGWRCVDRDFCANILSAESSDSEGF 266
Query: 162 DTVEGYTCGPCPSGYTGDGERCQRIGGCSRNPCAQGKLNEKTRCVRCDDIPEHPYYRCGS 221
+G CPSG+ +G + C + +KT+ + + C
Sbjct: 267 VIHDGECMQECPSGFIRNGSQSMYCIPCEGPCPKVCEEEKKTKTIDSVTSAQM-LQGCTI 325
Query: 222 CPEGTTGNGTRCHDIDECDL 241
N R ++I
Sbjct: 326 FKGNLLINIRRGNNIASELE 345
>1edm_B Factor IX; epidermal growth factor, EGF, calcium- binding, EGF-like
domain, structure and function, coagulation factor;
1.50A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ixa_A
Length = 39
Score = 32.5 bits (75), Expect = 0.045
Identities = 13/36 (36%), Positives = 16/36 (44%), Gaps = 3/36 (8%)
Query: 149 CNMRPCFQGVQCFDTVEGYTCGPCPSGYTGDGERCQ 184
C PC G C D + Y C CP G+ G C+
Sbjct: 6 CESNPCLNGGSCKDDINSYEC-WCPFGFEGK--NCE 38
Score = 31.3 bits (72), Expect = 0.12
Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
Query: 235 DIDECDLAEPCDPRVQCTNLFPGYRCDPCPAGFTGST 271
D D+C+ + PC C + Y C CP GF G
Sbjct: 2 DGDQCE-SNPCLNGGSCKDDINSYECW-CPFGFEGKN 36
Score = 26.7 bits (60), Expect = 4.8
Identities = 10/32 (31%), Positives = 13/32 (40%), Gaps = 7/32 (21%)
Query: 289 VDIDECADG--RNGGCDSNSMCTNTEGSFTCT 318
VD D+C NGG C + S+ C
Sbjct: 1 VDGDQCESNPCLNGG-----SCKDDINSYECW 27
>3zyj_B Netrin-G1; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo
sapiens}
Length = 426
Score = 36.7 bits (84), Expect = 0.051
Identities = 25/160 (15%), Positives = 34/160 (21%), Gaps = 41/160 (25%)
Query: 107 TCATDNPCFPGVECRDTREGPRCMRCPDGYVGDGIHCKPGVTCNMRPCFQGVQCFDTVEG 166
T + EC GP C +C RP +G
Sbjct: 304 TVCVYDNSKLTCECEHNTTGPDCGKCKKN-------------YQGRPW-SPGSYLPIPKG 349
Query: 167 YTCGPCPSGYTGDGERCQRIGGCSRNPCAQGKLNEKTRCVRCDDIPEHPYYRCGSCPEGT 226
PS + C C G C + RC CP
Sbjct: 350 AANACIPSISSIGTNVCD----NELLHCQNGG--------TCHN-----NVRC-LCPAAY 391
Query: 227 TGNGTRCHDIDECDLAEPCDPRVQCTNLFPGYRCDPCPAG 266
T G C ++ C+ C +
Sbjct: 392 T--GILC---EKLR----CEEAGSCGSDSGQGAPPHGTHH 422
Score = 35.6 bits (81), Expect = 0.10
Identities = 21/140 (15%), Positives = 27/140 (19%), Gaps = 20/140 (14%)
Query: 108 CATDNPCFPGVECRDTREGPRCMRCPDGYVGDG-IHCKPGVTCNMRPCFQGVQCFDTVEG 166
C C C G CK RP +G
Sbjct: 294 RGRCKCNLHATVCVYDNSKLTCE-CEHNTTGPDCGKCKKN--YQGRPW-SPGSYLPIPKG 349
Query: 167 YTCGPCPSGYTG--------DGERCQRIGGCSRNPCAQGKLN-EKTRCVRCDDIPE---H 214
C + + CQ G C N C +
Sbjct: 350 AAN-ACIPSISSIGTNVCDNELLHCQNGGTCHNNVRCLCPAAYTGILCEKLRCEEAGSCG 408
Query: 215 PYYRCGSCPEGTTGNGTRCH 234
G+ P GT + H
Sbjct: 409 SDSGQGAPPHGTHHHH--HH 426
Score = 29.8 bits (66), Expect = 6.3
Identities = 28/220 (12%), Positives = 53/220 (24%), Gaps = 22/220 (10%)
Query: 108 CATDNPCFPGVECRDTREGPRCMRCPDGYVGDGIHCKPGVTCNMRPCFQGVQCFDTVEGY 167
C P ++ + C + Y + ++ F G
Sbjct: 182 CLDAFHMDPKSVKDLSQHTVLEIICTEEYSTGYTTNSKIIHFEIKDRF------AFFAGP 235
Query: 168 TCGPCPSGYTGDGERCQRIGGCSRNPCAQGKLNEKTRCVRCDDIPEHPYYRCGSCPEGTT 227
S Y + + L + D++ Y+ S +
Sbjct: 236 RLRNMASLYGQLDTTKKLRDFFTVTDLRIRLLRPAVGEIFVDELHLARYFYAISDIK--V 293
Query: 228 GNGTRCHDIDECDLAEPCDPRVQCTNLFPGYRCDPCPAGFTGSTGVQGVGLEHAVRFRQT 287
+C+ + + +C + G C C + G G L
Sbjct: 294 RGRCKCNLHATVCVYDNSKLTCECEHNTTGPDCGKCKKNYQGRPWSPGSYLPIPKGAANA 353
Query: 288 C----------VDIDECADGRNGGCDSNSMC----TNTEG 313
C V +E +NGG N++ G
Sbjct: 354 CIPSISSIGTNVCDNELLHCQNGGTCHNNVRCLCPAAYTG 393
>2uwi_A CRME protein; receptor, poxvirus TNF receptor, receptor
immunomodulator, TNF alpha receptor; 2.0A {Vaccinia
virus}
Length = 142
Score = 34.7 bits (79), Expect = 0.063
Identities = 26/134 (19%), Positives = 34/134 (25%), Gaps = 24/134 (17%)
Query: 154 CFQGVQCFDTVEGYTCGPCPSGYTGDGERCQRIGGCSRNPCAQG----KLNEKTRCVRCD 209
C QGV +++ E C C G T RC + C N C C
Sbjct: 2 CEQGVSYYNSQELKCCKLCKPG-TYSDHRCDKYSDTICGHCPSDTFTSIYNRSPWCHSCR 60
Query: 210 DIPEHPYYRCGSCPEGTTG-----NGTRCHDIDECDLAEPCDPRVQCTNLFPGYR----- 259
C T + + C C P+ +C GY
Sbjct: 61 GPCGTNRVEVTPCTPTTNRICHCDSNSYCLLKASDGNCVTCAPKTKCG---RGYGKKGED 117
Query: 260 ------CDPCPAGF 267
C C G
Sbjct: 118 EMGNTICKKCRKGT 131
>4aks_A PATG, thiazoline oxidase/subtilisin-like protease; hydrolase,
patellamide; 2.19A {Prochloron didemni} PDB: 4akt_A
Length = 360
Score = 35.9 bits (83), Expect = 0.070
Identities = 11/87 (12%), Positives = 20/87 (22%), Gaps = 3/87 (3%)
Query: 884 NPEQTDSNSNHIGDVCDSGVDTDHDGVPDPMDNC--PKVANPNQLDNDRDGKGDECDPDL 941
QT + + D D + P P + D + D
Sbjct: 41 LHNQTLGDPQITIVIIDGDPDYTLSCFEGAEVSKVFPYWHEPAEPITPEDYAAFQSIRD- 99
Query: 942 DGDGISNDEDNCRLIYNPNQDDSDGDG 968
G E+ + +D +
Sbjct: 100 QGLKGKEKEEALEAVIPDTKDRIVLND 126
>4dur_A Plasminogen, serine protease; fibrinolysis, hydrolase; HET: NAG GAL
SIA; 2.45A {Homo sapiens} PDB: 4a5t_S* 4duu_A 2feb_A
Length = 791
Score = 36.2 bits (83), Expect = 0.092
Identities = 31/179 (17%), Positives = 41/179 (22%), Gaps = 35/179 (19%)
Query: 105 KPTCATDNPCFPGVECRDTREGPRCMRCPDGYVGDGIHCKPGVTCNMRPCFQGVQ----- 159
+P C T +P C PRC P + C +G
Sbjct: 223 RPWCFTTDPNKRWELCDI----PRC------------TTPPPSSGPTYQCLKGTGENYRG 266
Query: 160 -CFDTVEGYTCGP----CPSGYTGDGERCQRIGGCSRNPCAQGKLNEKTRCVRCDDIPEH 214
TV G+TC P + E N C C +
Sbjct: 267 NVAVTVSGHTCQHWSAQTPHTHNRTPE-NFPCKNLDENYCRNPDGKRAPWC-----HTTN 320
Query: 215 PYYRCGSCPEGTTGNGTRCHDIDECDLAEPCDPRVQCTNLFPG--YRCDPCPAGFTGST 271
R C + + + P VQ G YR TG
Sbjct: 321 SQVRWEYCKIPSCDSSPVSTEQLAPTAPPELTPVVQDCYHGDGQSYRGT-SSTTTTGKK 378
>1zlg_A Anosmin 1; insulin-like growth factor receptor Cys-rich fold, WHEY
acidic protein fold, fibronectin type III fold, hormone-
growth factor complex; NMR {Homo sapiens}
Length = 680
Score = 35.7 bits (81), Expect = 0.11
Identities = 19/110 (17%), Positives = 36/110 (32%), Gaps = 9/110 (8%)
Query: 158 VQCFDTVEGYTC-GPCPSGYTGDGERCQRIGGCSRNPCAQGKLNEKTRCV-RCDDIPEHP 215
V C + + C PC +CQ + C + C+ C+ +
Sbjct: 52 VWCQNHKQCSKCLEPCKESGDLRKHQCQ-------SFCEPLFPKKSYECLTSCEFLKYIL 104
Query: 216 YYRCGSCPEGTTGNGTRCHDIDECDLAEPCDPRVQCTNLFPGYRCDPCPA 265
+ G CP +G ++ C++ C +C + G+ C
Sbjct: 105 LVKQGDCPAPEKASGFAAACVESCEVDNECSGVKKCCSNGCGHTCQVPKT 154
>2dtg_E Insulin receptor; IR ectodomain, X-RAY crystallography, hormone
receptor/immune system complex; 3.80A {Homo sapiens}
SCOP: b.1.2.1 b.1.2.1 b.1.2.1 c.10.2.5 c.10.2.5 g.3.9.1
PDB: 3loh_E
Length = 897
Score = 35.7 bits (81), Expect = 0.12
Identities = 32/211 (15%), Positives = 49/211 (23%), Gaps = 39/211 (18%)
Query: 169 CGPCPSGYTGDGERCQRIGGCSRNPCAQGKLNEKTRCVRCDDIPEHPYYR--CGSCPEGT 226
CG G C + C I + C
Sbjct: 155 CGDICPGTAKGKTNCPA--TVINGQFVERCWTHSHCQKVCPTICKSHGCTAEGLCCHSEC 212
Query: 227 TGNGTRCHDIDECDLAEPCDPRVQCTNLFPGYRC-DPCPAGFTGSTGVQGVGLEHAVRFR 285
GN ++ D +C V C N + RC + CP +
Sbjct: 213 LGNCSQPDDPTKC---------VACRNFYLDGRCVETCPPPYYHFQD------------- 250
Query: 286 QTCVDIDECADGRN--GGCDSNSMCTNTEGSFTCTSLCRNSYMVRNVSVGCQS------- 336
CV+ C D + + C C + Y + + ++ C
Sbjct: 251 WRCVNFSFCQDLHHKCKNSRRQGCHQYVIHNNKCIPECPSGYTMNSSNLLCTPCLGPCPK 310
Query: 337 ---QNFGADVCPDGTRCDRNAKCTRILGNHY 364
G T CT I G+
Sbjct: 311 VCHLLEGEKTIDSVTSAQELRGCTVINGSLI 341
>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell
adhesion, DI mutation, glycoprotein, HOST-virus
interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo
sapiens} PDB: 3ije_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*
Length = 690
Score = 35.1 bits (80), Expect = 0.16
Identities = 40/266 (15%), Positives = 68/266 (25%), Gaps = 25/266 (9%)
Query: 120 CRDTREGPRCMRCPDGYVGDGIHCKPGVTCNMRPCFQGVQCFDTVEGYTCGPCPSGYTGD 179
C + P C +GD + P + G+
Sbjct: 374 CLNNEVIPGLKSCMGLKIGDTVSFSIEAKVRGCPQEKEKSFTIKPVGFKDSLIVQVTFDC 433
Query: 180 GERCQRIGGCSRNPCAQGKLNEKTRCVRCDDIPEHPYYRCGSCPEGTTGNGTRCHDIDEC 239
CQ + + C G + RC P +C C E + +
Sbjct: 434 DCACQAQAEPNSHRCNNGNGTFECGVCRCG--PGWLGSQC-ECSEEDYRPSQQD-ECSPR 489
Query: 240 DLAEPCDPRVQCTNLFPGYRCDPCPAGFTGSTGVQGVGLEHAVRFRQTCVDIDECADGRN 299
+ C R +C +C C + G + + +CV +
Sbjct: 490 EGQPVCSQRGECLC----GQCV-CHSSDFGKITGKYCECDDF-----SCVRYKGEMCSGH 539
Query: 300 GGCDSNSMCTNTEG--SFTCTSLCRNSYMVRNVSVGCQSQNF---GADVCPD----GTRC 350
G C C + C R + + + C + G+ VC G C
Sbjct: 540 GQCSCGD-CLCDSDWTGYYCNCTTRTDTCMSSNGLLCSGRGKCECGSCVCIQPGSYGDTC 598
Query: 351 DRNAKCTRILGNHYAC-KCDNGWAGD 375
++ C C +C G
Sbjct: 599 EKCPTCPDACTFKKECVECKKFDRGA 624
Score = 35.1 bits (80), Expect = 0.16
Identities = 45/301 (14%), Positives = 69/301 (22%), Gaps = 50/301 (16%)
Query: 106 PTCATDNPCFPGVECRDTREG--------PRCMRCPDGYVGDGIHCKPGVT--------- 148
TC + C + G + CP G
Sbjct: 372 ATCLNNEVIPGLKSCMGLKIGDTVSFSIEAKVRGCPQEKEKSFTIKPVGFKDSLIVQVTF 431
Query: 149 -----CNMRPCFQGVQCFDTVEGYTCG--PCPSGYTGDGERCQRIGGCSRNPCAQGKLNE 201
C + +C + + CG C G+ G C P Q + +
Sbjct: 432 DCDCACQAQAEPNSHRCNNGNGTFECGVCRCGPGWLGSQCECSE---EDYRPSQQDECSP 488
Query: 202 KTRCVRCDDIPEHPYYRCGSCPEGTTGNGTRCHDIDECDLAE-PCDPRVQCTNLFPGYRC 260
+ C E +C C G ECD C+ +C
Sbjct: 489 REGQPVCSQRGECLCGQC-VCHSSDFGK--ITGKYCECDDFSCVRYKGEMCSG---HGQC 542
Query: 261 DP----CPAGFTGSTGVQGVGLEHAVRFRQTCVDIDECADGRNGGCDSNSMCTNTEGSF- 315
C + +TG TC+ + G C+ S GS+
Sbjct: 543 SCGDCLCDSDWTGYYCNCTTR-------TDTCMSSNGLLCSGRGKCECGSCVCIQPGSYG 595
Query: 316 -TCTSLCRNSYMVRNVSVGCQSQNFGADVCPDGTRCDRNAKCTRILGNHYACKCDNGWAG 374
TC + + F D C+R + D G
Sbjct: 596 DTCEKCPTCPDACTFKKECVECKKFDRGALHDENTCNRYCRDE---IESVKELKDTGKDA 652
Query: 375 D 375
Sbjct: 653 V 653
Score = 34.3 bits (78), Expect = 0.29
Identities = 26/145 (17%), Positives = 34/145 (23%), Gaps = 18/145 (12%)
Query: 108 CATDNPCFPGVECRDTREGPRCMRCPDGYVGDGIHCKPGVTCNMRPCFQGVQCFDTVEGY 167
C +C C C + G +C M E
Sbjct: 530 RYKGEMCSGHGQCSC----GDC-LCDSDWTGYYCNCTTRTDTCMSSNGLLCSGRGKCECG 584
Query: 168 TCGPCPSGYTGDGERCQRIGGCSRNPCAQGKLNEKTRCVRCDDIPEHPYYRCGSCPEGTT 227
+C G GD C + P K CV C + R E T
Sbjct: 585 SCVCIQPGSYGD--------TCEKCPTCPDACTFKKECVEC-----KKFDRGALHDENTC 631
Query: 228 GNGTRCHDIDECDLAEPCDPRVQCT 252
R +L + V CT
Sbjct: 632 NRYCRDEIESVKELKDTGKDAVNCT 656
>1n1i_A Merozoite surface protein-1; MSP1, malaria, surface antigen,
glycoprotein, EGF domain, cell adhesion; HET: HIS; 2.40A
{Plasmodium knowlesi strain H} SCOP: g.3.11.4 g.3.11.4
Length = 105
Score = 32.4 bits (73), Expect = 0.21
Identities = 10/34 (29%), Positives = 12/34 (35%)
Query: 346 DGTRCDRNAKCTRILGNHYACKCDNGWAGDGQFC 379
T NA C R L +C G+ G C
Sbjct: 14 IDTNVPENAACYRYLDGTEEWRCLLGFKEVGGKC 47
Score = 31.6 bits (71), Expect = 0.43
Identities = 18/91 (19%), Positives = 27/91 (29%), Gaps = 20/91 (21%)
Query: 298 RNGGCDSNSMCTNTE-GSFTCTSLCRNSYMVRN-----VSVGCQSQNFGADVCPDGTRCD 351
+ N+ C G+ C + S+ C+ N G C
Sbjct: 14 IDTNVPENAACYRYLDGTEEWR--CLLGFKEVGGKCVPASITCEENNGG---------CA 62
Query: 352 RNAKCTRILGNHYACKCDNGWA---GDGQFC 379
A+CT CKC + +G FC
Sbjct: 63 PEAECTMDDKKEVECKCTKEGSEPLFEGVFC 93
Score = 31.2 bits (70), Expect = 0.53
Identities = 15/75 (20%), Positives = 18/75 (24%), Gaps = 15/75 (20%)
Query: 245 CDPRVQCTNLFPGYRCDPCPAGFTGSTGVQGVGLEHAVRFRQTCVDIDECADGRNGGCDS 304
C G C GF G CV + NGGC
Sbjct: 18 VPENAACYRYLDGTEEWRCLLGFKEVGG--------------KCVPASITCEENNGGCAP 63
Query: 305 NSMCTNTE-GSFTCT 318
+ CT + C
Sbjct: 64 EAECTMDDKKEVECK 78
Score = 30.5 bits (68), Expect = 1.1
Identities = 17/88 (19%), Positives = 23/88 (26%), Gaps = 6/88 (6%)
Query: 111 DNPCFPGVECRDTREGPRCMRCPDGYVGDGIHCKPGVTC---NMRPCFQGVQCFDTVEGY 167
D C +G RC G+ G C P N C +C +
Sbjct: 15 DTNVPENAACYRYLDGTEEWRCLLGFKEVGGKCVPASITCEENNGGCAPEAECTMDDKKE 74
Query: 168 ---TCGPCPSGYTGDGERCQRIGGCSRN 192
C S +G C G +
Sbjct: 75 VECKCTKEGSEPLFEGVFCSSSSGPHHH 102
>1b9w_A Protein (merozoite surface protein 1); MSP-1, candidate malaria
vaccine, surface antigen; 1.80A {Plasmodium cynomolgi}
SCOP: g.3.11.4 g.3.11.4 PDB: 2npr_A
Length = 95
Score = 31.9 bits (72), Expect = 0.30
Identities = 11/45 (24%), Positives = 15/45 (33%), Gaps = 1/45 (2%)
Query: 342 DVCPDGTRCDRNAKCTRILGNHYACKCDNGWAGDGQFCGRDTDLD 386
C D T NA C R L +C + D C ++
Sbjct: 5 HRCID-TNVPENAACYRYLDGTEEWRCLLYFKEDAGKCVPAPNMT 48
Score = 30.8 bits (69), Expect = 0.63
Identities = 18/92 (19%), Positives = 29/92 (31%), Gaps = 21/92 (22%)
Query: 298 RNGGCDSNSMCTNTE-GSFTCTSLCRNSYM------VRNVSVGCQSQNFGADVCPDGTRC 350
+ N+ C G+ C + V ++ C+ +N G C
Sbjct: 8 IDTNVPENAACYRYLDGTEEWR--CLLYFKEDAGKCVPAPNMTCKDKNGG---------C 56
Query: 351 DRNAKCTRILGNHYACKCDNGWA---GDGQFC 379
A+C N CKC + +G FC
Sbjct: 57 APEAECKMNDKNEIVCKCTKEGSEPLFEGVFC 88
Score = 27.7 bits (61), Expect = 7.0
Identities = 16/81 (19%), Positives = 23/81 (28%), Gaps = 7/81 (8%)
Query: 111 DNPCFPGVECRDTREGPRCMRCPDGYVGDGIHC--KPGVTCNMR--PCFQGVQCFDTVEG 166
D C +G RC + D C P +TC + C +C +
Sbjct: 9 DTNVPENAACYRYLDGTEEWRCLLYFKEDAGKCVPAPNMTCKDKNGGCAPEAECKMNDKN 68
Query: 167 Y---TCGPCPSGYTGDGERCQ 184
C S +G C
Sbjct: 69 EIVCKCTKEGSEPLFEGVFCS 89
>4a7k_A Aldos-2-ulose dehydratase; lyase, dehydratase/isomerase, lignin
degradation, cortalcerone/microthecin forming,
metalloenzyme; 2.00A {Phanerochaete chrysosporium} PDB:
4a7y_A* 4a7z_A*
Length = 900
Score = 34.2 bits (77), Expect = 0.32
Identities = 47/403 (11%), Positives = 92/403 (22%), Gaps = 48/403 (11%)
Query: 706 EGTTGNGTRCHDIDEDN---CVHIPNSGQEDADEDNIGD-----ICDDDADNDGILNPSD 757
+ DI ++ + G D G + ++ +
Sbjct: 90 KLDFPVAMHYADITKNGFNDVIITDQYGSSMDDIWAYGGRVSWLENPGELRDNWTMRTIG 149
Query: 758 NCPYVHNPDQLDSDQDGMRDRRLGDACDNCPTDNCPYVHNPDQLDSDQDGMRD--RRLGD 815
+ P +H + P D + R +
Sbjct: 150 HSPGMHRLKAGHFTRTDRVQVVAVPIVVASSDLTTPADVIIFTAPDDPRSEQLWQRDVVG 209
Query: 816 ACDNCPTVPNVDQTDTDNDGTGDACDNDMDNDGINNHADN------CPRNANPDQRDSDH 869
V V +TD + D + D P++R +
Sbjct: 210 TRHLVHEVAIVPAAETDGEMRFDQIILAGRDGVDCLWYDGARWQRHLVGTGLPEERGDPY 269
Query: 870 DGIGDACDNCPRVSNPEQTDSNSNHIGDVCDSGVDTDHDGVPDPMDNCPKVANPNQLDND 929
G G A RV + S V T G P + LD
Sbjct: 270 WGAGSAAVG--RVGDDYAGYICSAEAFHGNTVSVYTKPAG--SPTGIVRAEWTRHVLDVF 325
Query: 930 RDGKGDECDP-------DLDGDG------------ISNDEDNCRLIYNPNQDDS------ 964
G D+DGDG + + Y +
Sbjct: 326 GPLNGKHTGSIHQVVCADIDGDGEDEFLVAMMGADPPDFQRTGVWCYKLVDRTNMKFSKT 385
Query: 965 --DGDGVGNVCDKDFDKDGTP-DVSDVCPNNSLVYRTDFRRYTTVILDPQGTSQIDPHWV 1021
G + +F G+ D++ + + + + + ++D +
Sbjct: 386 KVSSVSAGRIATANFHSQGSEVDIATISYSVPGYFESPNPSINVFLSTGILAERLDEEVM 445
Query: 1022 IYNHGAEILQTMNSDPGLAIGQDKFSGVDFEGTFFVDTDIDDD 1064
+ A + L + K + V +D + +
Sbjct: 446 LRVVRAGSTRFKTEMEFLDVAGKKLTLVVLPPFARLDVERNVS 488
>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET:
NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A*
Length = 1245
Score = 34.4 bits (78), Expect = 0.33
Identities = 17/124 (13%), Positives = 31/124 (25%), Gaps = 3/124 (2%)
Query: 146 GVTCNMRPCFQGVQCFDTVEGYTCGPCPSGYTGDGERCQRIGGCSRNPCAQGKLNEKTRC 205
V + G G P + + +G + +
Sbjct: 102 QVEAKWVEVKSKRRDMTVFSGLFVGGLPPELRAAALKLT-LASVREREPFKGWIRDVRVQ 160
Query: 206 VRCDDIPEHPYYRCGSCPEGTTGNGTRCHDIDECDLAEPCDPRVQCTNLFPGYRCDPCPA 265
+ + P + G G+ C +E + C C+ + CD
Sbjct: 161 SSLALPVDSGEVKLDDEPPNSGG-GSPCEAGEEGE-GGVCLNGGVCSVVDDQAVCDCSRT 218
Query: 266 GFTG 269
GF G
Sbjct: 219 GFRG 222
Score = 34.4 bits (78), Expect = 0.34
Identities = 11/73 (15%), Positives = 17/73 (23%)
Query: 112 NPCFPGVECRDTREGPRCMRCPDGYVGDGIHCKPGVTCNMRPCFQGVQCFDTVEGYTCGP 171
+ G + G G C+ G C G C + C
Sbjct: 156 DVRVQSSLALPVDSGEVKLDDEPPNSGGGSPCEAGEEGEGGVCLNGGVCSVVDDQAVCDC 215
Query: 172 CPSGYTGDGERCQ 184
+G+ G
Sbjct: 216 SRTGFRGKDCSQG 228
Score = 31.4 bits (70), Expect = 2.5
Identities = 16/128 (12%), Positives = 33/128 (25%), Gaps = 26/128 (20%)
Query: 92 VDEIELPAIPIVKKPTCATDNPCFPGVECRDTREGPRCMRCPDGYVG------------- 138
+D I + + GV + P+ + +G+ G
Sbjct: 938 IDTKITTQITAGARNLDLKSDLYIGGVAKETYKSLPKLVHAKEGFQGCLASVDLNGRLPD 997
Query: 139 ---DGIHCKPGV---------TCNMRPCFQGVQCFDTVEGYTCGPCPSGYTGDGERCQRI 186
D + C + TC C C +G++C + ++G
Sbjct: 998 LISDALFCNGQIERGCEGPSTTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGPLC-NDPG 1056
Query: 187 GGCSRNPC 194
+
Sbjct: 1057 TTYIFSKG 1064
Score = 30.2 bits (67), Expect = 5.2
Identities = 11/42 (26%), Positives = 13/42 (30%)
Query: 137 VGDGIHCKPGVTCNMRPCFQGVQCFDTVEGYTCGPCPSGYTG 178
V + C PC C D Y C +GY G
Sbjct: 610 VKPSCSRETAKPCLSNPCKNNGMCRDGWNRYVCDCSGTGYLG 651
Score = 29.8 bits (66), Expect = 7.3
Identities = 12/75 (16%), Positives = 19/75 (25%), Gaps = 3/75 (4%)
Query: 586 KKPTCATDNPCFPGVECRDTREGPRCMRCPDGYVGDGIHCKPGVTCNMRPCFQGVQCFDT 645
TC + C C +G C C G C T + G +
Sbjct: 1016 PSTTCQE-DSCSNQGVCLQQWDGFSC-DCSMTSFS-GPLCNDPGTTYIFSKGGGQITYKW 1072
Query: 646 VFNASIRLKVTHVVL 660
N + + +
Sbjct: 1073 PPNDRPSTRADRLAI 1087
Score = 29.8 bits (66), Expect = 8.9
Identities = 9/57 (15%), Positives = 12/57 (21%), Gaps = 1/57 (1%)
Query: 592 TDNPCFPGVECRDTREGPRCMRCPDGYVGDGIHCKPGVTCNMRPCFQGVQCFDTVFN 648
C G C + C G+ G C+D N
Sbjct: 194 EGGVCLNGGVCSVVDDQAVCDCSRTGFRGKDCSQGKE-EYIATFKGSEYFCYDLSQN 249
Score = 29.4 bits (65), Expect = 9.9
Identities = 10/42 (23%), Positives = 15/42 (35%), Gaps = 1/42 (2%)
Query: 230 GTRCHDIDECDLAEPCDPRVQCTNLFPGYRCDPCPAGFTGST 271
C L+ PC C + + Y CD G+ G +
Sbjct: 613 SCSRETAKPC-LSNPCKNNGMCRDGWNRYVCDCSGTGYLGRS 653
>3t5o_A Complement component C6; macpf, MAC, membrane attack complex,
innate IMMU system, blood, membrane, cytolysin, immune
SYST; HET: NAG FUL FUC BGC MAN; 2.87A {Homo sapiens}
PDB: 4a5w_B* 4e0s_B*
Length = 913
Score = 34.1 bits (77), Expect = 0.40
Identities = 26/176 (14%), Positives = 50/176 (28%), Gaps = 12/176 (6%)
Query: 97 LPAIPIVKKPTCATDNPCFPGVECRDTREGPRCMRCP-DGYVGDGIHCK-PGVTCNMRPC 154
+ P V A + C T+ +R Y C+ N RP
Sbjct: 455 VKENPAVIDFELAPIVDLVRNIPCAVTK--RNNLRKALQEYAAKFDPCQCAPCPNNGRPT 512
Query: 155 FQGVQCFDTVEGYTCGPCPSGYTGDGERCQRIGGCS----RNPCAQGKLNEKTRCVRCDD 210
G +C + T G + D + G + C +++R C++
Sbjct: 513 LSGTECLCVCQSGTYGENCEKQSPDYKSNAVDGQWGCWSSWSTCDAT--YKRSRTRECNN 570
Query: 211 -IPEHPYYRC-GSCPEGTTGNGTRCHDIDECDLAEPCDPRVQCTNLFPGYRCDPCP 264
P+ RC G + + + + + + + + P P
Sbjct: 571 PAPQRGGKRCEGEKRQEEDCTFSIMENNGQPCINDDEEMKEVDLPEIEADSGCPQP 626
Score = 31.8 bits (71), Expect = 1.7
Identities = 23/157 (14%), Positives = 33/157 (21%), Gaps = 16/157 (10%)
Query: 123 TREGPRCMRCPDGYVGDGIHCKPGVTCNMRPCFQGVQCFDTVEGYTCGPCPSG---YTGD 179
T + C K C + G +C C + D
Sbjct: 731 TPPISNSLTC-----EKDTLTKLKGHCQLGQKQSGSECICMSPEEDCSHHSEDLCVFDTD 785
Query: 180 GERCQRIGGCSRN--PCAQGKLNEKTRCVRCDDIPEHPYYRCGSCPEGTTGNGTRCHDID 237
C C + C D + + + + C D
Sbjct: 786 SNDYFTSPACKFLAEKCLNNQQLHFLHIGSCQDGRQLEWGLERTRLSSNSTKKESC-GYD 844
Query: 238 ECDLAEPCDPRV-QCTNLFPGYRCDPCPAGFTGSTGV 273
C E C +C L P C G V
Sbjct: 845 TCYDWEKCSASTSKCVCLLPP----QCFKGGNQLYCV 877
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase,
hydrolase-lipid binding P complex; 3.30A {Homo sapiens}
PDB: 3p5c_L
Length = 400
Score = 33.7 bits (76), Expect = 0.40
Identities = 21/114 (18%), Positives = 30/114 (26%), Gaps = 2/114 (1%)
Query: 110 TDNPCFPGVECRDTREGPRCMRCPDGYVGDGIHCKPGVTCNMRPCFQGVQCFDTVEGYTC 169
DN C D + G C CPDG+ + P C + GY C
Sbjct: 4 LDNNGGCSHVCNDLKIGYEC-LCPDGFQLVAQRRCEDIDECQDPDTCSQLCVNLEGGYKC 62
Query: 170 -GPCPSGYTGDGERCQRIGGCSRNPCAQGKLNEKTRCVRCDDIPEHPYYRCGSC 222
+ C+ +G + K R + P R
Sbjct: 63 QCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVA 116
Score = 32.1 bits (72), Expect = 1.3
Identities = 21/55 (38%), Positives = 26/55 (47%), Gaps = 6/55 (10%)
Query: 207 RCDDIPEHPYYRCGSCPEG-TTGNGTRCHDIDECDLAEPCDPRVQCTNLFPGYRC 260
C+D+ Y C CP+G RC DIDEC + C C NL GY+C
Sbjct: 13 VCNDLKIG--YEC-LCPDGFQLVAQRRCEDIDECQDPDTCSQ--LCVNLEGGYKC 62
>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform
1, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 98
Score = 31.4 bits (70), Expect = 0.42
Identities = 11/48 (22%), Positives = 15/48 (31%), Gaps = 1/48 (2%)
Query: 757 DNCPYVHNPDQLDSDQDGMRDRRLGDAC-DNCPTDNCPYVHNPDQLDS 803
+C + H D D D C + C Y H P L +
Sbjct: 36 TDCRFAHPADSTMIDTSDNTVTVCMDYIKGRCMREKCKYFHPPAHLQA 83
>1szb_A Mannose binding lectin-associated serine protease-2 related
protein, MAP19 (19KDA)...; calcium, complement, innate
immunity, CUB, EGF; 2.50A {Homo sapiens} SCOP: b.23.1.1
g.3.11.1
Length = 170
Score = 32.6 bits (74), Expect = 0.45
Identities = 15/53 (28%), Positives = 20/53 (37%), Gaps = 2/53 (3%)
Query: 287 TCVDIDECADGRNGGCDSNSMCTNTEGSFTCTSLCRNSYMVRNVSVGCQSQNF 339
DIDEC + C N G F C+ CR Y++ C Q+
Sbjct: 120 AAEDIDECQVAPGEAPTCDHHCHNHLGGFYCS--CRAGYVLHRNKRTCSEQSL 170
>1nzi_A Complement C1S component; calcium, innate immunity, modular
structure, CUB, EGF, hydrolase; 1.50A {Homo sapiens}
SCOP: b.23.1.1 g.3.11.1
Length = 159
Score = 31.7 bits (72), Expect = 0.66
Identities = 13/53 (24%), Positives = 19/53 (35%), Gaps = 4/53 (7%)
Query: 283 RFRQTCVDIDECADGRNGGCDSNSMCTNTEGSFTCTSLCRNSYMVRNVSVGCQ 335
DI+EC D + C C N G + C+ C Y + + C
Sbjct: 109 AAYYVATDINECTDFVDVPCSH--FCNNFIGGYFCS--CPPEYFLHDDMKNCG 157
>2rjq_A Adamts-5; metalloprotease domain, aggrecanase, cleavage on PAIR of
BAS residues, extracellular matrix, glycoprotein,
hydrolase, ME binding; HET: NAG BAT; 2.60A {Homo
sapiens}
Length = 378
Score = 32.7 bits (74), Expect = 0.79
Identities = 12/83 (14%), Positives = 19/83 (22%), Gaps = 1/83 (1%)
Query: 170 GPCPSGYTGDGERCQRIGGCSRNPCAQGKLNEKTRCVRCDDIPEHPYYRCGSCPEGTT-G 228
P ++C G + C + + C + EGT G
Sbjct: 223 EELPGQTYDATQQCNLTFGPEYSVCPGMDVCARLWCAVVRQGQMVCLTKKLPAVEGTPCG 282
Query: 229 NGTRCHDIDECDLAEPCDPRVQC 251
G C D +
Sbjct: 283 KGRICLQGKCVDKTKKKYYSTSS 305
>3asi_A Neurexin-1-alpha; beta-sandwich, cell adhesion, synapse maturation,
neuroligin glycosylation, membrane; HET: NAG; 2.30A {Bos
taurus}
Length = 410
Score = 32.7 bits (74), Expect = 0.89
Identities = 9/44 (20%), Positives = 16/44 (36%), Gaps = 1/44 (2%)
Query: 135 GYVGDGIHCKPGVTCNMRPCFQGVQCFDTVEGYTCGPCPSGYTG 178
G + G TC C C +G++C + ++G
Sbjct: 175 GQIERGCEGPST-TCQEDSCSNQGVCLQQWDGFSCDCSMTSFSG 217
>4aqt_A Laminin subunit gamma-1; cell adhesion; HET: NAG BMA; 3.20A {Mus
musculus}
Length = 375
Score = 32.4 bits (73), Expect = 0.96
Identities = 18/115 (15%), Positives = 27/115 (23%), Gaps = 23/115 (20%)
Query: 108 CATDNPCFPGVECRDTREGPRCMRCPDGYVGD---GIHCKPGVTCNMRPC--------FQ 156
C + C+ G C +C + + C C F
Sbjct: 264 CVKNEFDKLMCNCKHNTYGVDCEKCLPFFNDRPWRRATAESASECLPCDCNGRSQECYFD 323
Query: 157 GVQCFDTVEGYTCGPCPSGYTGDGERCQRIGGCSRNPCAQG--KLNEKTRCVRCD 209
T G C C G +C+R C + +L C
Sbjct: 324 PELYRSTGHGGHCTNCRDNTDGA--KCER--------CRENFFRLGNTEACSPAA 368
>1ob1_C Major merozoite surface protein; immune system,
immunoglobulin/complex, immunoglobulin, antib fragment,
MSP1-19, EGF-like domain; 2.90A {Plasmodium falciparum}
SCOP: g.3.11.4 g.3.11.4 PDB: 1cej_A 2flg_A
Length = 99
Score = 30.1 bits (67), Expect = 1.1
Identities = 12/49 (24%), Positives = 19/49 (38%), Gaps = 1/49 (2%)
Query: 338 NFGADVCPDGTRCDRNAKCTRILGNHYACKCDNGWAGDGQFCGRDTDLD 386
N C +C +N+ C R L CKC + +G C + +
Sbjct: 1 NISQHQCVK-KQCPQNSGCFRHLDEREECKCLLNYKQEGDKCVENPNPT 48
>3f1s_B Vitamin K-dependent protein Z; PZ, ZPI, complex, serpin, protease
inhibitor, protease, GLYC secreted, serine protease
inhibitor, blood coagulation; HET: FLC NAG; 2.30A {Homo
sapiens}
Length = 283
Score = 32.0 bits (73), Expect = 1.2
Identities = 12/47 (25%), Positives = 18/47 (38%), Gaps = 4/47 (8%)
Query: 292 DECADGRNGGCDSNSMCTNTEGSFTCTSLCRNSYMVRNVSVGCQSQN 338
+EC R GC C + S+TC+ C Y + C +
Sbjct: 3 NECHPERTDGCQHF--CLPGQESYTCS--CAQGYRLGEDHKQCVPHD 45
>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative
splicing, metal- binding, nucleus, RNA-binding, zinc,
zinc-finger, metal binding; 1.50A {Homo sapiens} PDB:
3d2s_A
Length = 70
Score = 29.2 bits (65), Expect = 1.2
Identities = 11/48 (22%), Positives = 16/48 (33%), Gaps = 1/48 (2%)
Query: 755 PSDNCPYVHNPDQLDSDQDGMRDRRLGDAC-DNCPTDNCPYVHNPDQL 801
++C + H D D + D C + C Y H P L
Sbjct: 20 GENDCRFAHPADSTMIDTNDNTVTVCMDYIKGRCSREKCKYFHPPAHL 67
>2ahx_A P180ERBB4, receptor tyrosine-protein kinase ERBB-4; X-RAY
crystallography, neuregulins, heparin-binding, cell CY
signaling protein; HET: NAG NDG; 2.40A {Homo sapiens}
PDB: 3u2p_A*
Length = 617
Score = 31.9 bits (71), Expect = 1.5
Identities = 34/326 (10%), Positives = 64/326 (19%), Gaps = 15/326 (4%)
Query: 107 TCATDNPCFPGVECRDTREGPRCMRCPDGYVGDGIHCKPGVTCNMRPCFQGVQCFDTVEG 166
C R RC YV D H + C+ C + +
Sbjct: 172 RCWGPTENHCQTLTRTVCAEQCDGRCYGPYVSDCCHRECAGGCSGPKDTDCFACMNFNDS 231
Query: 167 YTCGP-CPSGYTGDGERCQRIGGCSRNPCAQGKLNEKTRCVRCDDIPEHPYYRCGSCPEG 225
C CP + + Q N K CV+ P + SC
Sbjct: 232 GACVTQCPQTFVYNPTTFQ----LEHNFN--AKYTYGAFCVKKC--PHNFVVDSSSCVRA 283
Query: 226 TTGNGTRCHDIDECDLAEPCDPRVQCTNLFPGYRCDPCPAGFTGSTGVQGVGLEHAVRFR 285
+ + D + + + +
Sbjct: 284 CPSSKMEVEENGIKMCKPCTDICPKACDGIGTGSLMSAQTVDSSNIDKF-----INCTKI 338
Query: 286 QTCVDIDECADGRNGGCDSNSMCTNTEGSFTCTSLCRNSYMVRNVSVGCQSQNFGADVCP 345
+ + ++ F +++ + +++
Sbjct: 339 NGNLIFLVTGIHGDPYNAIEAIDPEKLNVFRTVREITGFLNIQSWPPNMTDFSVFSNLVT 398
Query: 346 DGTRCDRNAKCTRILGNHYACKCDNGWAGDGQFCGRDTDLDGWPDYDLACPDRKCRKDNC 405
G R + IL + G D +
Sbjct: 399 IGGRVLYSGLSLLILKQQGITSLQFQSLKEIS-AGNIYITDNSNLCYYHTINWTTLFSTI 457
Query: 406 VHIPNSGINNHADNCPRNANPDQRMC 431
N A+NC +C
Sbjct: 458 NQRIVIRDNRKAENCTAEGMVCNHLC 483
Score = 31.2 bits (69), Expect = 2.8
Identities = 32/282 (11%), Positives = 62/282 (21%), Gaps = 24/282 (8%)
Query: 107 TCATDNPCFPGVECRDTREGPRCMRCPDGYVGDGIHCKPGVTCNMRPCFQGVQC------ 160
+ T + T+ + G GD + + F+ V+
Sbjct: 320 SAQTVDSSNIDKFINCTKINGNLIFLVTGIHGDPYNAIEAIDPEKLNVFRTVREITGFLN 379
Query: 161 -FDTVEGYTCGPCPSGYTGDGERCQRIGGCSRNPCAQGKLNEKTRCVRCDDIPEHPYYRC 219
T S G R G QG + + + ++
Sbjct: 380 IQSWPPNMTDFSVFSNLVTIGGRVLYSGLSLLILKQQGITSLQFQSLKEISAGNIYITDN 439
Query: 220 GSCPEGTTGNGTRCHDIDECDLAEPCDPRVQCTNLFPGYRCDPCPAGFTGSTGVQGVGLE 279
+ T N T + + + + C + G
Sbjct: 440 SNLCYYHTINWTTLFSTINQRIVIRDNRKAENCTAEGMVCNHLCSSDGCWGPGPDQCLSC 499
Query: 280 HAVRFRQTCVDIDECADGRNGGCDSNSMCTNTEGSFTCTSLCRNSYMVRNVSVGCQS--- 336
+ C++ DG +++S+C C C G
Sbjct: 500 RRFSRGRICIESCNLYDGEFREFENDSIC------VECDPQCEKMEDGLLTCHGPGPDNC 553
Query: 337 --------QNFGADVCPDGTRCDRNAKCTRILGNHYACKCDN 370
+ CPDG + + + C
Sbjct: 554 TKCSHFKDGPNCVEKCPDGLQGANSFIFKYADPDRECHPCHP 595
Score = 30.0 bits (66), Expect = 6.1
Identities = 36/319 (11%), Positives = 62/319 (19%), Gaps = 15/319 (4%)
Query: 120 CRDTREGPRCMR-CPDGYVGDGIHCKPGVTCNMRPCFQGVQC------FDTVEGYTCGPC 172
C + + C+ CP +V + + N + + F C
Sbjct: 225 CMNFNDSGACVTQCPQTFVYNPTTFQLEHNFNAKYTYGAFCVKKCPHNFVVDSSSCVRAC 284
Query: 173 PSGYTGDGERCQRIGGCSRNPCAQGKLNEKTRCVRCDDIPEHPYYRCGSCPEGTTGNGTR 232
PS E ++ + C + T + + GN
Sbjct: 285 PSSKMEVEENGIKMCKPCTDICPKACDGIGTGSLMSAQTVDSSNIDKFINCTKINGNLIF 344
Query: 233 CHDIDECDLAEPCDPRVQCTNLFPGYRCDPCPAGFTGSTGVQGVGLEHAVRFRQTCVDID 292
D + TG +Q +
Sbjct: 345 LVTGIHGDPYNAIEAIDPE-----KLNVFRTVREITGFLNIQSW---PPNMTDFSVFSNL 396
Query: 293 ECADGRNGGCDSNSMCTNTEGSFTCTSLCRNSYMVRNVSVGCQSQNFGADVCPDGTRCDR 352
GR + + +G + N+ + S T
Sbjct: 397 VTIGGRVLYSGLSLLILKQQGITSLQFQSLKEISAGNIYITDNSNLCYYHTINWTTLFST 456
Query: 353 NAKCTRILGNHYACKCDNGWAGDGQFCGRDTDLDGWPDYDLACPDRKCRKDNCVHIPNSG 412
+ I N A C C D PD L+C +
Sbjct: 457 INQRIVIRDNRKAENCTAEGMVCNHLCSSDGCWGPGPDQCLSCRRFSRGRICIESCNLYD 516
Query: 413 INNHADNCPRNANPDQRMC 431
C
Sbjct: 517 GEFREFENDSICVECDPQC 535
>2y38_A Laminin subunit alpha-5; structural protein, cell adhesion,
basement membrane; HET: NAG; 2.90A {Mus musculus}
Length = 403
Score = 31.4 bits (70), Expect = 1.8
Identities = 18/130 (13%), Positives = 27/130 (20%), Gaps = 3/130 (2%)
Query: 106 PTCATDNPCFPGVECRDTREGPRCMRCPDGYVGDGIHCKPGVTCNMRPCFQGVQCFDTVE 165
+ ++ C D + C + G C
Sbjct: 245 RDPTVTRRYYYSIKDISIGGRCVCHGHADVCDAKDPLDPFRLQCACQHNTCGGSCDRCCP 304
Query: 166 GYTCGPCPSGYTGDGERCQRIG-GCSRNPCAQGKLNEKTRCVRCDDIPEHPYYRCGSCPE 224
G+ P T CQ C ++ + D C C
Sbjct: 305 GFNQQPWKPATTDSANECQSCNCHGHAYDCYYDPEVDRREASQNQDNVYQGGGVCLDCQH 364
Query: 225 GTTGNGTRCH 234
TTG C
Sbjct: 365 HTTGI--NCE 372
>2vov_A MOPE, surface-associated protein; metal-binding protein, oxidized
tryptophan, methanotroph bacterium, kunurenine, copper
binding; HET: KYN; 1.35A {Methylococcus capsulatus} PDB:
2vox_A* 2vow_A
Length = 336
Score = 31.3 bits (70), Expect = 2.3
Identities = 15/86 (17%), Positives = 24/86 (27%), Gaps = 10/86 (11%)
Query: 863 DQRDSDHDG--IGDACDNCPRVSNPEQTDSNSNHIGDVCDSGVDTDHDGVPDPMDNCPKV 920
D D D DG C++ +P + GVD++ DG + +
Sbjct: 3 DTLDRDGDGSTADADCNDFAPTIHPGAAE--------ATLDGVDSNCDGRDSGVAEVVET 54
Query: 921 ANPNQLDNDRDGKGDECDPDLDGDGI 946
+ P G I
Sbjct: 55 FKNPGTYSSPVINFKIASPPGPGTPI 80
Score = 29.4 bits (65), Expect = 8.1
Identities = 18/86 (20%), Positives = 25/86 (29%), Gaps = 12/86 (13%)
Query: 901 SGVDTDHDGVP---DPMDNCPKVANPNQLDNDRDGKGDECDPDLDGDGISNDEDNCRLIY 957
+D D DG D D P + +P + DG CD D ++
Sbjct: 3 DTLDRDGDGSTADADCNDFAPTI-HPGAAEATLDGVDSNCD--------GRDSGVAEVVE 53
Query: 958 NPNQDDSDGDGVGNVCDKDFDKDGTP 983
+ V N GTP
Sbjct: 54 TFKNPGTYSSPVINFKIASPPGPGTP 79
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial
hypercholesterolemia, cholestero metabolism, lipid
transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens}
SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1
g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A
1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Length = 699
Score = 31.3 bits (70), Expect = 2.5
Identities = 42/302 (13%), Positives = 81/302 (26%), Gaps = 21/302 (6%)
Query: 232 RCHDIDECDLAEPCDPRVQCTNLFPGYRCDPC---PAGFTGSTGVQGVGLEHAVRFRQTC 288
RCHD CD C + C PA F ++ + C
Sbjct: 94 RCHDGKCISRQFVCDSDRDCLDGSDEASCPVLTCGPASFQCNSS-------TCIPQLWAC 146
Query: 289 VDIDECADGRNGGCDSNSMCTNTEGSFTCTSLCRNSYMVRNVSVGCQSQNFGADVCPDGT 348
+ +C DG D F S +++ +S C ++ D PD
Sbjct: 147 DNDPDCEDG----SDEWPQRCRGLYVFQGDSSPCSAFEFHCLSGECIHSSWRCDGGPDCK 202
Query: 349 RCDRNAKCTRILGNHYACKCDNG------WAGDGQF-CGRDTDLDGWPDYDLACPDRKCR 401
C +C +G D ++ C +D G + L K +
Sbjct: 203 DKSDEENCAVATCRPDEFQCSDGNCIHGSRQCDREYDCKDMSDEVGCVNVTLCEGPNKFK 262
Query: 402 KDNCVHIPNSGINNHADNCPRNANPDQRMCGHSLRIHIVFCLTVLGINNHADNCPRNANP 461
+ I + N A +C ++ + CG + + + + + +
Sbjct: 263 CHSGECITLDKVCNMARDCRDWSDEPIKECGTNECLDNNGGCSHVCNDLKIGYECLCPDG 322
Query: 462 DQRDSDHDGIGDACDNCPRVSNPEQTDSNSNHIGDVCDSGVDTDHDGVPDPMDNCPKVAN 521
Q + P + + + + H + + +
Sbjct: 323 FQLVAQRRCEDIDECQDPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKAVGSIAYLFF 382
Query: 522 PN 523
N
Sbjct: 383 TN 384
Score = 31.3 bits (70), Expect = 2.9
Identities = 45/330 (13%), Positives = 77/330 (23%), Gaps = 38/330 (11%)
Query: 108 CATDNPCFPGVECRDTREGPRCMRCPDGYVGDGIHCKPGVTCNMRPCFQGVQCFDTVEGY 167
C +D C G D P P + + C P + C C D + +
Sbjct: 107 CDSDRDCLDG---SDEASCPVLTCGPASFQCNSSTCIPQLWA----CDNDPDCEDGSDEW 159
Query: 168 TCG-PCPSGYTGDGERCQRI-GGCSRNPCAQGKLNEKTRC---VRCDDIPEHPYYRCGSC 222
+ GD C C C ++ RC C D + +C
Sbjct: 160 PQRCRGLYVFQGDSSPCSAFEFHCLSGEC----IHSSWRCDGGPDCKDKSDEENCAVATC 215
Query: 223 PEGTT--GNGTRCHDIDECDLAEPCDPRVQCTNLFPGYRCDPCPAGFTGSTGVQGVGLEH 280
+G H +CD C C+ P F +G
Sbjct: 216 RPDEFQCSDGNCIHGSRQCDREYDCKDMSDEVGCVNVTLCEG-PNKFKCHSG-------E 267
Query: 281 AVRFRQTCVDIDECADGRNGGCDSNSMCTNTEGSFTCTSLCRNSYMVRNVSVGCQSQNFG 340
+ + C +C D + + + C+ +C + + C
Sbjct: 268 CITLDKVCNMARDCRDWSDEPIKECGTNECLDNNGGCSHVCNDLKI----GYECL----- 318
Query: 341 ADVCPDGTRCDRNAKCTRILGNHYACKCDNGWAGDGQFCGRDTDLDGWPDYDLACPDRKC 400
CPDG + +C I C + D
Sbjct: 319 ---CPDGFQLVAQRRCEDIDECQDPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKAVG 375
Query: 401 RKDNCVHIPNSGINNHADNCPRNANPDQRM 430
+ + + +
Sbjct: 376 SIAYLFFTNRHEVRKMTLDRSEYTSLIPNL 405
>3nxp_A Prethrombin-1; allostery, blood coagulation, hydro kringle, serine
protease, zymogen; HET: NAG; 2.20A {Homo sapiens}
Length = 424
Score = 31.0 bits (70), Expect = 2.7
Identities = 14/135 (10%), Positives = 23/135 (17%), Gaps = 4/135 (2%)
Query: 123 TREGPRCMR---CPDGYVGDGIHCKPGVTCNMRPCFQGVQCFDTVEGYTCGPCPSGYTGD 179
T G C+ + V C + V Y G D
Sbjct: 30 TTHGLPCLAWASAQAKALSKHQDFNSAVQLVENFCRNPDGDEEGVWCYVAGKPGDFGYCD 89
Query: 180 GERCQR-IGGCSRNPCAQGKLNEKTRCVRCDDIPEHPYYRCGSCPEGTTGNGTRCHDIDE 238
C+ + + + + + E G
Sbjct: 90 LNYCEEAVEEETGDGLDEDSDRAIEGATATSEYQTFFNPATFGSGEADCGLRPLFEKKSL 149
Query: 239 CDLAEPCDPRVQCTN 253
D E
Sbjct: 150 EDKTERELLESYIDG 164
>2erf_A Thrombospondin-1; TSP-1, N-terminal TSPN, HBD, sugar binding
protein; 1.45A {Homo sapiens} SCOP: b.29.1.4 PDB: 2es3_A
1z78_A
Length = 209
Score = 30.5 bits (68), Expect = 3.0
Identities = 19/83 (22%), Positives = 31/83 (37%), Gaps = 6/83 (7%)
Query: 3 SPSWKDVLIESKHNGKPIVEGWSVKDDLLDDGVINGLLLGVKQDIMGARYTLYMDCVDHG 62
+ + + GK V SV++ LL G + L V+ R LY+DC
Sbjct: 98 NGKAGTLDLSLTVQGKQHVV--SVEEALLATGQWKSITLFVQ----EDRAQLYIDCEKME 151
Query: 63 TVAMTQSLKKMFDSMKNPQMRLR 85
+ ++ +F RLR
Sbjct: 152 NAELDVPIQSVFTRDLASIARLR 174
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A
{Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1
Length = 722
Score = 31.2 bits (71), Expect = 3.0
Identities = 11/32 (34%), Positives = 13/32 (40%), Gaps = 7/32 (21%)
Query: 455 CPRNANPDQRDSDHDGIGDACDNCPRVSNPEQ 486
CP DQ+ GD C+ C R PE
Sbjct: 143 CPYCGAEDQK-------GDQCEVCGRPLTPEI 167
Score = 31.2 bits (71), Expect = 3.0
Identities = 11/32 (34%), Positives = 13/32 (40%), Gaps = 7/32 (21%)
Query: 856 CPRNANPDQRDSDHDGIGDACDNCPRVSNPEQ 887
CP DQ+ GD C+ C R PE
Sbjct: 143 CPYCGAEDQK-------GDQCEVCGRPLTPEI 167
>1g1t_A E-selectin; EGF, adhesion molecule, SLEX, immune system, membrane
protein; HET: SIA GAL MAG FUC; 1.50A {Homo sapiens}
SCOP: d.169.1.1 g.3.11.1 PDB: 1esl_A
Length = 157
Score = 29.7 bits (67), Expect = 3.1
Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Query: 148 TCNMRPCFQGVQCFDTVEGYTCGPCPSGYTGDGERCQRI 186
C C +C +T+ YTC C G++G +C++I
Sbjct: 121 ACTNTSCSGHGECVETINNYTCK-CDPGFSGL--KCEQI 156
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta
propeller, protein binding-antagonist complex; HET: NAG
FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Length = 318
Score = 30.4 bits (68), Expect = 3.6
Identities = 12/34 (35%), Positives = 16/34 (47%), Gaps = 3/34 (8%)
Query: 208 CDDIPEHPYYRCGSCPEG--TTGNGTRCHDIDEC 239
C P P+Y+C +CP G NG C D +
Sbjct: 281 CLMSPVKPFYQC-ACPTGVKLLENGKTCKDGNSH 313
>1mox_A Epidermal growth factor receptor; EGFR, receptor, complex,
transferase-growth F complex; HET: NAG FUC BMA MAN;
2.50A {Homo sapiens} SCOP: c.10.2.5 c.10.2.5 g.3.9.1
g.3.9.1
Length = 501
Score = 30.7 bits (68), Expect = 3.8
Identities = 30/233 (12%), Positives = 56/233 (24%), Gaps = 21/233 (9%)
Query: 110 TDNPCFPGVECRDTREGPRCMRCPDGYVGDGIHCKPGVTCNMRPCFQGVQCFDTVEGYTC 169
+ + C +C C N + + C G
Sbjct: 144 VSSDFLSNMSMDFQNHLGSCQKCDPSC--PNGSCWGAGEENCQKLTKI-ICAQQCSGRCR 200
Query: 170 GPCPSGYTGDGERCQRIGGCSRNPCAQ-GKLNEKTRCV-RCDD--IPEHPYYRCGSCPEG 225
G PS + G + C K ++ C C + Y+ PEG
Sbjct: 201 GKSPSDCC-HNQCAAGCTGPRESDCLVCRKFRDEATCKDTCPPLMLYNPTTYQMDVNPEG 259
Query: 226 TTGNGTRCHDIDECDLAEPCDPRVQCTNLFPGYRCDPCPAGFTGSTGVQGVGLEHAVRFR 285
G C + +C C C A +
Sbjct: 260 KYSFGATC--VKKCPRNYVVTDHGSC--------VRACGADSYEMEEDGVRKCKKCEGPC 309
Query: 286 QTCVDIDECADGRNGGCDSNSMCTNTEGSFTCTSLCRNSYMVRNVSVGCQSQN 338
+ + + + + TN + CTS+ + +++ G +
Sbjct: 310 RKVCNGIGIGEFK---DSLSINATNIKHFKNCTSISGDLHILPVAFRGDSFTH 359
>1egf_A Epidermal growth factor; NMR {Mus musculus} SCOP: g.3.11.1 PDB:
1epg_A 1eph_A 1epi_A 1epj_A 3egf_A 1gk5_A
Length = 53
Score = 27.5 bits (61), Expect = 4.2
Identities = 13/45 (28%), Positives = 20/45 (44%), Gaps = 5/45 (11%)
Query: 142 HCKPGVTCNMRPCFQGVQCF--DTVEGYTCGPCPSGYTGDGERCQ 184
+ C G C ++++ YTC C GY+ G+RCQ
Sbjct: 2 SYPGCPSSYDGYCLNGGVCMHIESLDSYTC-NCVIGYS--GDRCQ 43
>2f83_A Coagulation factor XI; protease, apple domain, hydrolase; HET: NAG;
2.87A {Homo sapiens} PDB: 2j8j_A 2j8l_A
Length = 625
Score = 30.6 bits (69), Expect = 4.4
Identities = 17/126 (13%), Positives = 26/126 (20%), Gaps = 12/126 (9%)
Query: 145 PGVTCNMRPCFQGVQCFDTVEGYTCGPCPSGYTGD----GERCQRIGGCSRNPCAQGKLN 200
P G C S + D GE + S C +
Sbjct: 265 PSTRIKKSKALSGFSLQSCRHSIPV-FCHSSFYHDTDFLGEELDIVAAKSHEACQKL-CT 322
Query: 201 EKTRCVRCDDIPEHPYYRCGSC----PEGTTGNGTRCHDIDECDLAEPCDPRVQCTNLFP 256
RC P G + G+ T+ R+ +
Sbjct: 323 NAVRCQFFTYTPAQASCNEGKGKCYLKLSSNGSPTKILHGRGG--ISGYTLRLCKMDNEC 380
Query: 257 GYRCDP 262
+ P
Sbjct: 381 TTKIKP 386
>1sg1_X Tumor necrosis factor receptor superfamily member 16; nerve growth
factor, NGF, neurotrophin, common neurotrophin receptor;
2.40A {Rattus norvegicus} SCOP: g.24.1.1 g.24.1.1
g.24.1.1 g.24.1.1 PDB: 3buk_C* 3ij2_X
Length = 161
Score = 29.4 bits (65), Expect = 4.4
Identities = 20/106 (18%), Positives = 26/106 (24%), Gaps = 12/106 (11%)
Query: 123 TREGPRCMRCPDG--YVGDGIHCKPGVTCNMRPCFQGVQCFDTVEGYTCGPCPSGYTGDG 180
C C D + +P C Q + C GY D
Sbjct: 30 GANQTVCEPCLDNVTFSDVVSATEPCKPCTECLGLQSMSAPCVEADDAVCRCAYGYYQDE 89
Query: 181 ERCQRIGGCSRNPCAQGKLNEKTRCVRCDDIPEHPYYRCGSCPEGT 226
E + + C G C + C CPEGT
Sbjct: 90 ETGHC---EACSVCEVGS-GLVFSCQDKQN------TVCEECPEGT 125
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET:
NAG; 2.85A {Rattus norvegicus}
Length = 349
Score = 30.2 bits (67), Expect = 5.0
Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 6/55 (10%)
Query: 291 IDECADGRNGGCDSNSMCTNTEGSFTCTSLCRNSYMVRNVSVGCQSQNFGADVCP 345
++ECA+ G C CTN+EG+F C C Y +R C++ +
Sbjct: 1 VNECAE--EGYCSQ--GCTNSEGAFQCW--CEAGYELRPDRRSCKALGPEPVLLF 49
>3t41_A Epidermin leader peptide processing serine protea; structural
genomics, center for structural genomics of infec
diseases, csgid; 1.95A {Staphylococcus aureus} PDB:
3qfh_A
Length = 471
Score = 30.2 bits (68), Expect = 5.4
Identities = 10/52 (19%), Positives = 20/52 (38%), Gaps = 5/52 (9%)
Query: 898 VCDSGVDTDHDGVPDPMDNCPKVANPNQLDNDRDGKGDECDPDLDGDGISND 949
+ D+GV +H D +N + L +G E + D +++
Sbjct: 152 IIDTGVMKNH---DDLKNN--FSTDSKNLVPLNGFRGTEPEETGDVHDVNDR 198
>1za4_A Thrombospondin 1; TSP-1, NTSP-1, HBD, arixtra, cell adhesion; HET:
SGN; 1.90A {Homo sapiens} SCOP: b.29.1.4 PDB: 2ouh_A
2ouj_A
Length = 251
Score = 29.8 bits (66), Expect = 5.4
Identities = 19/79 (24%), Positives = 30/79 (37%), Gaps = 6/79 (7%)
Query: 7 KDVLIESKHNGKPIVEGWSVKDDLLDDGVINGLLLGVKQDIMGARYTLYMDCVDHGTVAM 66
+ + GK V SV++ LL G + L V+ R LY+DC +
Sbjct: 112 GTLDLSLTVQGKQHVV--SVEEALLATGQWKSITLFVQ----EDRAQLYIDCEKMENAEL 165
Query: 67 TQSLKKMFDSMKNPQMRLR 85
++ +F RLR
Sbjct: 166 DVPIQSVFTRDLASIARLR 184
>2kl7_A Fibulin-4; secreted, calcium, disease mutation, disulfide bond,
EGF- like domain, glycoprotein, polymorphism, structural
genomics, PSI-2; NMR {Homo sapiens}
Length = 71
Score = 27.3 bits (60), Expect = 5.8
Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Query: 235 DIDECD-LAEPCDPRVQCTNLFPGYRCDP 262
D++EC + E C ++C N + GY C P
Sbjct: 2 DVNECLTIPEACKGEMKCINHYGGYLCLP 30
>3alq_R Tumor necrosis factor receptor superfamily member; ligand-receptor
complex, cytokine, cytokine-cytokine recepto; 3.00A
{Homo sapiens}
Length = 173
Score = 29.0 bits (64), Expect = 5.9
Identities = 19/124 (15%), Positives = 27/124 (21%), Gaps = 18/124 (14%)
Query: 161 FDTVEGYTCGPCPSGYTGDGERCQRIGGCSRNPCAQG----KLNEKTRCVRCDDIPEHPY 216
+D C C G C + + C N C+ C
Sbjct: 14 YDQTAQMCCSKCSPG-QHAKVFCTKTSDTVCDSCEDSTYTQLWNWVPECLSCGSRCSSDQ 72
Query: 217 Y----------RCGSCPEGTTGNGTRCHDIDECDLAEPCDP---RVQCTNLFPGYRCDPC 263
R +C G ++ C C P + C PC
Sbjct: 73 VETQACTREQNRICTCRPGWYCALSKQEGCRLCAPLRKCRPGFGVARPGTETSDVVCKPC 132
Query: 264 PAGF 267
G
Sbjct: 133 APGT 136
>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA
synthetase, ATP-binding, ligas binding,
nucleotide-binding, protein biosynthesis; HET: CIT;
1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A
3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A*
1pg2_A* 1qqt_A 1mea_A 1med_A
Length = 560
Score = 29.9 bits (68), Expect = 6.5
Identities = 10/31 (32%), Positives = 14/31 (45%), Gaps = 7/31 (22%)
Query: 455 CPRNANPDQRDSDHDGIGDACDNCPRVSNPE 485
CP+ +PDQ GD C+ C +P
Sbjct: 158 CPKCKSPDQY-------GDNCEVCGATYSPT 181
Score = 29.9 bits (68), Expect = 6.5
Identities = 10/31 (32%), Positives = 14/31 (45%), Gaps = 7/31 (22%)
Query: 856 CPRNANPDQRDSDHDGIGDACDNCPRVSNPE 886
CP+ +PDQ GD C+ C +P
Sbjct: 158 CPKCKSPDQY-------GDNCEVCGATYSPT 181
>1g1s_A P-selectin; selectin, lectin, EGF, sulphated, SLEX, immune system,
membr protein; HET: TYS SIA GAL NAG FUC NGA; 1.90A {Homo
sapiens} SCOP: d.169.1.1 g.3.11.1 PDB: 1g1r_A* 1g1q_A*
1fsb_A
Length = 162
Score = 29.0 bits (65), Expect = 7.2
Identities = 11/43 (25%), Positives = 19/43 (44%), Gaps = 3/43 (6%)
Query: 148 TCNMRPCFQGVQCFDTVEGYTCGPCPSGYTGDGERCQRIGGCS 190
+C C + +C +T+ YTC C G+ G C+ +
Sbjct: 121 SCQDMSCSKQGECLETIGNYTCS-CYPGFYGP--ECEYVRDDD 160
>3urf_Z Tumor necrosis factor receptor superfamily member; cystein-rich
domain, beta-sandwich, cytokine; HET: NAG; 2.70A {Homo
sapiens}
Length = 171
Score = 29.0 bits (64), Expect = 7.3
Identities = 17/104 (16%), Positives = 24/104 (23%), Gaps = 7/104 (6%)
Query: 125 EGPRCMRCPDGY----VGDGIHCKPGVTCNMRPCFQGVQCFDTVEGYTCGPCPSGYTGDG 180
C CPD Y C + +C T C G +
Sbjct: 37 WKTVCAPCPDHYYTDSWHTSDECLYCSPVCKELQYVKQECNRTHN--RVCECKEGRYLEI 94
Query: 181 ERCQRIGGCSRNPCAQGKLNEKTRCVRCDDIPEHPYYRCGSCPE 224
E C + C + R C P+ + S
Sbjct: 95 EFCLKHRSCP-PGFGVVQAGTPERNTVCKRCPDGFFSNETSSKA 137
>1wmd_A Protease; alpha-beta hydrolase fold, jelly-roll beta-barrel,
hydrolase; 1.30A {Bacillus SP} SCOP: b.18.1.20 c.41.1.1
PDB: 1wme_A 1wmf_A
Length = 434
Score = 29.5 bits (66), Expect = 8.4
Identities = 13/56 (23%), Positives = 21/56 (37%), Gaps = 5/56 (8%)
Query: 898 VCDSGVDTDHDGVPDPMDNCPKVA-----NPNQLDNDRDGKGDECDPDLDGDGISN 948
V D+G+DT + K+ ND +G G + G+G +N
Sbjct: 28 VADTGLDTGRNDSSMHEAFRGKITALYALGRTNNANDTNGHGTHVAGSVLGNGSTN 83
>3cfw_A L-selectin; EGF, cell adhesion, EGF-like domain, glycoprotein,
membrane, sushi, transmembrane; HET: NAG MAN BMA; 2.20A
{Homo sapiens}
Length = 164
Score = 28.6 bits (64), Expect = 8.6
Identities = 13/49 (26%), Positives = 18/49 (36%), Gaps = 4/49 (8%)
Query: 143 CKPGVTCNMRPCFQGVQCFDTVEGYTCGPCPSGYTGDGERCQRIGGCSR 191
C C +C + + YTC C GY G +CQ + R
Sbjct: 117 CYTASCQPW-SCSGHGECVEIINNYTCN-CDVGYYGP--QCQFVQVDPR 161
>3qd6_R CD40L receptor, tumor necrosis factor receptor superfamily member;
immune regulator, cytokine-cytokine receptor compl; HET:
NAG; 3.50A {Homo sapiens}
Length = 177
Score = 28.7 bits (63), Expect = 8.6
Identities = 21/120 (17%), Positives = 29/120 (24%), Gaps = 16/120 (13%)
Query: 163 TVEGYTCGPCPSGYTGDGERCQRIGGCSRNPCAQGKL----NEKTRCVRCDDIPEHPYY- 217
+ C C G C PC + + N +T C + +
Sbjct: 12 LINSQCCSLCQPG-QKLVSDCTEFTETECLPCGESEFLDTWNRETHCHQHKYCDPNLGLR 70
Query: 218 ----------RCGSCPEGTTGNGTRCHDIDECDLAEPCDPRVQCTNLFPGYRCDPCPAGF 267
+C EG C P Q C+PCP GF
Sbjct: 71 VQQKGTSETDTICTCEEGWHCTSEACESCVLHRSCSPGFGVKQIATGVSDTICEPCPVGF 130
>1n8y_C Protooncoprotein; tyrosin kinase receptor, cell surface receptor,
transferase; HET: NAG; 2.40A {Rattus norvegicus} SCOP:
c.10.2.5 c.10.2.5 g.3.9.1 g.3.9.1 PDB: 1n8z_C* 3be1_A*
1s78_A* 3mzw_A* 3n85_A* 2a91_A* 3h3b_A
Length = 608
Score = 29.6 bits (65), Expect = 8.8
Identities = 33/239 (13%), Positives = 52/239 (21%), Gaps = 10/239 (4%)
Query: 200 NEKTRCVRCDDIPEHPYYRCGSCPEGTTGNGTRCHDIDECDLAEPCDPRVQCTNLFPGYR 259
N + V D C + G D +C P
Sbjct: 155 NNQLAPVDIDTNRSRACPPCAPACKDNHCWGESPEDCQILTGTICTSGCARCKGRLPTDC 214
Query: 260 CDP-CPAGFTGSTGVQGVGLEHAVRFRQTCVDIDECADGRNGGCDSNSMCTNTEGSFTCT 318
C C AG TG + H C C D+ N EG +T
Sbjct: 215 CHEQCAAGCTGPKHSDCLACLH-FNHSGICEL--HCPALVTYNTDTFESMHNPEGRYTFG 271
Query: 319 SLCRNSYMVRNVSVGCQSQNFGADVCPDGTRCDRNAKCTRILGNHYACKCDNGWAGDGQF 378
+ C + + VCP + T+ C G
Sbjct: 272 ASCVTTCPYNYL---STEVGSCTLVCPPNNQEVTAEDGTQRC---EKCSKPCARVCYGLG 325
Query: 379 CGRDTDLDGWPDYDLACPDRKCRKDNCVHIPNSGINNHADNCPRNANPDQRMCGHSLRI 437
++ D + + + + P+Q +L
Sbjct: 326 MEHLRGARAITSDNVQEFDGCKKIFGSLAFLPESFDGDPSSGIAPLRPEQLQVFETLEE 384
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.138 0.460
Gapped
Lambda K H
0.267 0.0548 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 21,031,909
Number of extensions: 1341884
Number of successful extensions: 5590
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3878
Number of HSP's successfully gapped: 683
Length of query: 1290
Length of database: 6,701,793
Length adjustment: 105
Effective length of query: 1185
Effective length of database: 3,770,088
Effective search space: 4467554280
Effective search space used: 4467554280
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.5 bits)