BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy6200
         (112 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1QF6|A Chain A, Structure Of E. Coli Threonyl-Trna Synthetase Complexed
           With Its Cognate Trna
          Length = 642

 Score = 26.6 bits (57), Expect = 3.8,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 5/55 (9%)

Query: 6   IFQENECF-QSVLKSSQRKLLKASRDKSFLLDRLLEYEKPVWSDSSDGEATESSD 59
           IF+E E F +S LK  Q + +K      F++DR+L  +   W +  D   T SS+
Sbjct: 273 IFRELEVFVRSKLKEYQYQEVKGP----FMMDRVLWEKTGHWDNYKDAMFTTSSE 323


>pdb|1EVK|A Chain A, Crystal Structure Of A Truncated Form Of Threonyl-Trna
          Synthetase With The Ligand Threonine
 pdb|1EVK|B Chain B, Crystal Structure Of A Truncated Form Of Threonyl-Trna
          Synthetase With The Ligand Threonine
 pdb|1EVL|A Chain A, Crystal Structure Of A Truncated Form Of Threonyl-Trna
          Synthetase With A Threonyl Adenylate Analog
 pdb|1EVL|B Chain B, Crystal Structure Of A Truncated Form Of Threonyl-Trna
          Synthetase With A Threonyl Adenylate Analog
 pdb|1EVL|C Chain C, Crystal Structure Of A Truncated Form Of Threonyl-Trna
          Synthetase With A Threonyl Adenylate Analog
 pdb|1EVL|D Chain D, Crystal Structure Of A Truncated Form Of Threonyl-Trna
          Synthetase With A Threonyl Adenylate Analog
 pdb|1FYF|A Chain A, Crystal Structure Of A Truncated Form Of Threonyl-Trna
          Synthetase Complexed With A Seryl Adenylate Analog
 pdb|1FYF|B Chain B, Crystal Structure Of A Truncated Form Of Threonyl-Trna
          Synthetase Complexed With A Seryl Adenylate Analog
 pdb|1KOG|A Chain A, Crystal Structure Of E. Coli Threonyl-Trna Synthetase
          Interacting With The Essential Domain Of Its Mrna
          Operator
 pdb|1KOG|B Chain B, Crystal Structure Of E. Coli Threonyl-Trna Synthetase
          Interacting With The Essential Domain Of Its Mrna
          Operator
 pdb|1KOG|C Chain C, Crystal Structure Of E. Coli Threonyl-Trna Synthetase
          Interacting With The Essential Domain Of Its Mrna
          Operator
 pdb|1KOG|D Chain D, Crystal Structure Of E. Coli Threonyl-Trna Synthetase
          Interacting With The Essential Domain Of Its Mrna
          Operator
 pdb|1KOG|E Chain E, Crystal Structure Of E. Coli Threonyl-Trna Synthetase
          Interacting With The Essential Domain Of Its Mrna
          Operator
 pdb|1KOG|F Chain F, Crystal Structure Of E. Coli Threonyl-Trna Synthetase
          Interacting With The Essential Domain Of Its Mrna
          Operator
 pdb|1KOG|G Chain G, Crystal Structure Of E. Coli Threonyl-Trna Synthetase
          Interacting With The Essential Domain Of Its Mrna
          Operator
 pdb|1KOG|H Chain H, Crystal Structure Of E. Coli Threonyl-Trna Synthetase
          Interacting With The Essential Domain Of Its Mrna
          Operator
          Length = 401

 Score = 26.2 bits (56), Expect = 4.7,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 5/55 (9%)

Query: 6  IFQENECF-QSVLKSSQRKLLKASRDKSFLLDRLLEYEKPVWSDSSDGEATESSD 59
          IF+E E F +S LK  Q + +K      F++DR+L  +   W +  D   T SS+
Sbjct: 32 IFRELEVFVRSKLKEYQYQEVKGP----FMMDRVLWEKTGHWDNYKDAMFTTSSE 82


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.317    0.132    0.403 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,463,572
Number of Sequences: 62578
Number of extensions: 126091
Number of successful extensions: 297
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 297
Number of HSP's gapped (non-prelim): 2
length of query: 112
length of database: 14,973,337
effective HSP length: 76
effective length of query: 36
effective length of database: 10,217,409
effective search space: 367826724
effective search space used: 367826724
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)