BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy6200
         (112 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q29RS4|IN80E_BOVIN INO80 complex subunit E OS=Bos taurus GN=INO80E PE=2 SV=1
          Length = 244

 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 28/40 (70%), Positives = 33/40 (82%)

Query: 3  LLFIFQENECFQSVLKSSQRKLLKASRDKSFLLDRLLEYE 42
          L F+  E+ECFQ  L+ +QRKLLK SRDKSFLLDRLL+YE
Sbjct: 22 LKFLIYEHECFQEELRKAQRKLLKVSRDKSFLLDRLLQYE 61


>sp|Q6AYH2|IN80E_RAT INO80 complex subunit E OS=Rattus norvegicus GN=Ino80e PE=2 SV=1
          Length = 244

 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 28/40 (70%), Positives = 33/40 (82%)

Query: 3  LLFIFQENECFQSVLKSSQRKLLKASRDKSFLLDRLLEYE 42
          L F+  E+ECFQ  L+ +QRKLLK SRDKSFLLDRLL+YE
Sbjct: 22 LKFLIYEHECFQEELRKAQRKLLKVSRDKSFLLDRLLQYE 61


>sp|Q8NBZ0|IN80E_HUMAN INO80 complex subunit E OS=Homo sapiens GN=INO80E PE=1 SV=1
          Length = 244

 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 28/40 (70%), Positives = 33/40 (82%)

Query: 3  LLFIFQENECFQSVLKSSQRKLLKASRDKSFLLDRLLEYE 42
          L F+  E+ECFQ  L+ +QRKLLK SRDKSFLLDRLL+YE
Sbjct: 22 LKFLIYEHECFQEELRKAQRKLLKVSRDKSFLLDRLLQYE 61


>sp|P23883|PUUC_ECOLI Aldehyde dehydrogenase PuuC OS=Escherichia coli (strain K12)
          GN=puuC PE=1 SV=2
          Length = 495

 Score = 30.4 bits (67), Expect = 3.6,   Method: Composition-based stats.
 Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 5/47 (10%)

Query: 9  ENECFQSVLKSSQRKLLKASRDKSFLLDRLLE-----YEKPVWSDSS 50
          ENE F++V   +Q  L K +R KS  +DR +      +E+  WS SS
Sbjct: 33 ENETFETVDPVTQAPLAKIARGKSVDIDRAMSAARGVFERGDWSLSS 79


>sp|P44130|Y1223_HAEIN Uncharacterized protein HI_1223 OS=Haemophilus influenzae (strain
           ATCC 51907 / DSM 11121 / KW20 / Rd) GN=HI_1223 PE=4 SV=1
          Length = 396

 Score = 29.6 bits (65), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 7/67 (10%)

Query: 19  SSQRKLLKASRDK--SFLLDRLLEYEKPVWSDSSDGEATESSDEEHKRVDFRYLFIQNHP 76
           ++Q KL +    K  + +  R ++Y+     D+ DG   ES    HK V  R    Q  P
Sbjct: 307 AAQAKLYQQLTKKPSTLIFHRFMQYQ---IDDAEDGRGKESLILLHKMVGER--IKQTSP 361

Query: 77  HRCLQCG 83
           +RC  CG
Sbjct: 362 YRCTNCG 368


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.317    0.132    0.403 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,543,333
Number of Sequences: 539616
Number of extensions: 1552092
Number of successful extensions: 4880
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 4867
Number of HSP's gapped (non-prelim): 15
length of query: 112
length of database: 191,569,459
effective HSP length: 80
effective length of query: 32
effective length of database: 148,400,179
effective search space: 4748805728
effective search space used: 4748805728
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)