RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6200
(112 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 30.4 bits (68), Expect = 0.10
Identities = 27/124 (21%), Positives = 37/124 (29%), Gaps = 52/124 (41%)
Query: 14 QSVLKSSQRK-----------------LLKASRDKSFLLDRLLEYEK---------PVWS 47
QS + S+RK LL + D + L++ PV+
Sbjct: 404 QSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDL--INKDLVKNNVSFNAKDIQIPVY- 460
Query: 48 DSSDGEATESSDEEHKRVDFRYLFIQNHPHRCLQCGTS----W---ANKGPTG--TFRGP 98
D+ DG D R L + R + C W T F GP
Sbjct: 461 DTFDGS------------DLRVL-SGSISERIVDCIIRLPVKWETTTQFKATHILDF-GP 506
Query: 99 GAAS 102
G AS
Sbjct: 507 GGAS 510
>1rm6_A 4-hydroxybenzoyl-COA reductase alpha subunit; xanthine oxidase
family, dimer heterotrimers, oxidoreductase; HET: PCD
FAD SF4 EPE; 1.60A {Thauera aromatica} SCOP: d.41.1.1
d.133.1.1 PDB: 1sb3_A*
Length = 769
Score = 27.2 bits (61), Expect = 1.1
Identities = 6/13 (46%), Positives = 6/13 (46%)
Query: 88 NKGPTGTFRGPGA 100
N P G RG G
Sbjct: 350 NTPPCGAMRGHGT 362
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 27.1 bits (59), Expect = 1.6
Identities = 12/57 (21%), Positives = 20/57 (35%), Gaps = 2/57 (3%)
Query: 26 KASRDKSFL--LDRLLEYEKPVWSDSSDGEATESSDEEHKRVDFRYLFIQNHPHRCL 80
+ ++ L L +LL P W+ SD + + + R L CL
Sbjct: 191 NCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL 247
>1t3q_B Quinoline 2-oxidoreductase large subunit; QOR, molybdenum, MCD;
HET: FAD MCN; 1.80A {Pseudomonas putida} SCOP: d.41.1.1
d.133.1.1
Length = 788
Score = 26.8 bits (60), Expect = 1.7
Identities = 7/13 (53%), Positives = 8/13 (61%)
Query: 88 NKGPTGTFRGPGA 100
NK P G +RG G
Sbjct: 363 NKCPIGAYRGVGF 375
>3hrd_A Nicotinate dehydrogenase large molybdopterin subunit; selenium
ligand, iron, iron-sulfur, metal-binding,
oxidoreductase; HET: MCN FAD; 2.20A {Eubacterium
barkeri}
Length = 425
Score = 26.0 bits (58), Expect = 2.8
Identities = 6/13 (46%), Positives = 7/13 (53%)
Query: 88 NKGPTGTFRGPGA 100
N +G FRG G
Sbjct: 343 NNPMSGAFRGFGV 355
>4efd_A Aminopeptidase; structural genomics, structural genomics
consortium, SGC, hydrolase; 2.45A {Trypanosoma brucei
brucei}
Length = 522
Score = 25.9 bits (57), Expect = 3.2
Identities = 3/11 (27%), Positives = 5/11 (45%)
Query: 83 GTSWANKGPTG 93
+ + G TG
Sbjct: 499 YPVFNSNGATG 509
>3ibj_A CGMP-dependent 3',5'-cyclic phosphodiesterase; PDE2A, GAF-domains,
allosteric regulation hydrolase, membrane; 3.02A {Homo
sapiens}
Length = 691
Score = 26.2 bits (57), Expect = 3.3
Identities = 12/61 (19%), Positives = 22/61 (36%), Gaps = 8/61 (13%)
Query: 6 IFQENECFQSVLK---SSQRKLLKASRDKSFLLDRLLEYEKPVWSDSSDGEATESSDEEH 62
+F + +L+ + R L A FLLD + + + DG + E
Sbjct: 190 LFTHLDDVSVLLQEIITEARNLSNAEICSVFLLD-----QNELVAKVFDGGVVDDESYEI 244
Query: 63 K 63
+
Sbjct: 245 R 245
>2hc9_A Leucine aminopeptidase 1; carbonate, structural genomics, P protein
structure initiative, NEW YORK SGX research center
structural genomics; 1.85A {Caenorhabditis elegans} PDB:
2hb6_A
Length = 491
Score = 25.5 bits (56), Expect = 5.1
Identities = 2/11 (18%), Positives = 3/11 (27%)
Query: 83 GTSWANKGPTG 93
+ TG
Sbjct: 460 APAEVGDRGTG 470
>2odx_A Cytochrome C oxidase polypeptide IV; all beta-protein,
metallo-protein, oxidoreductase; NMR {Saccharomyces
cerevisiae}
Length = 80
Score = 24.0 bits (52), Expect = 7.2
Identities = 12/48 (25%), Positives = 19/48 (39%), Gaps = 8/48 (16%)
Query: 42 EKPVWSDSSDGE----ATESSDEEHKRVDFRYLFI-QNHPHRCLQCGT 84
+ P+ +S D T S H + +L N RC +CG+
Sbjct: 20 KDPIIIESYDDYRYVGCTGSPAGSHTIM---WLKPTVNEVARCWECGS 64
>1t35_A Hypothetical protein YVDD, putative lysine decarboxylase;
structural genomics target, NYSGXRC, PSI, protein
structure initiative; 2.72A {Bacillus subtilis} SCOP:
c.129.1.1
Length = 191
Score = 24.9 bits (55), Expect = 7.2
Identities = 8/36 (22%), Positives = 17/36 (47%), Gaps = 4/36 (11%)
Query: 17 LKSSQRKLLKASRDKSFLLDRLLEYEKPV----WSD 48
S KL+ +S L++++ Y P+ W++
Sbjct: 155 SNESHLKLIHSSSRPDELIEQMQNYSYPILEKKWTE 190
>3c8y_A Iron hydrogenase 1; dithiomethylether, H-cluster, iron-sulfur
binding, oxidoreductase; HET: HCN; 1.39A {Clostridium
pasteurianum} SCOP: c.96.1.1 d.15.4.2 d.58.1.5 PDB:
1c4c_A* 1c4a_A* 1feh_A*
Length = 574
Score = 24.7 bits (54), Expect = 9.5
Identities = 3/16 (18%), Positives = 5/16 (31%)
Query: 70 LFIQNHPHRCLQCGTS 85
+ H +C C
Sbjct: 89 QLLDIHEFKCGPCNRR 104
>1yle_A Arginine N-succinyltransferase, alpha chain; structural genomics,
acyltransferase, arginine metabolism, protein structure
initiative; 1.70A {Pseudomonas aeruginosa} SCOP:
d.108.1.8
Length = 342
Score = 24.7 bits (54), Expect = 9.6
Identities = 6/11 (54%), Positives = 8/11 (72%)
Query: 68 RYLFIQNHPHR 78
R LF+ +HP R
Sbjct: 147 RLLFMASHPER 157
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.132 0.403
Gapped
Lambda K H
0.267 0.0655 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,574,529
Number of extensions: 77222
Number of successful extensions: 268
Number of sequences better than 10.0: 1
Number of HSP's gapped: 266
Number of HSP's successfully gapped: 18
Length of query: 112
Length of database: 6,701,793
Length adjustment: 76
Effective length of query: 36
Effective length of database: 4,579,797
Effective search space: 164872692
Effective search space used: 164872692
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.6 bits)