RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy6200
         (112 letters)



>d2ix0a4 b.40.4.16 (A:173-557) Exoribonuclease 2, RNB {Escherichia
          coli [TaxId: 562]}
          Length = 385

 Score = 26.5 bits (57), Expect = 0.92
 Identities = 10/22 (45%), Positives = 10/22 (45%)

Query: 51 DGEATESSDEEHKRVDFRYLFI 72
          DG ATE  DE   R D   L  
Sbjct: 4  DGVATEMLDEGLVREDLTALDF 25


>d2bopa_ d.58.8.1 (A:) Papillomavirus-1 E2 protein {Bovine
          papillomavirus type 1 [TaxId: 10559]}
          Length = 85

 Score = 25.0 bits (55), Expect = 1.1
 Identities = 10/30 (33%), Positives = 14/30 (46%)

Query: 67 FRYLFIQNHPHRCLQCGTSWANKGPTGTFR 96
          +R+   +NH HR   C T+W      G  R
Sbjct: 16 YRFRVKKNHRHRYENCTTTWFTVADNGAER 45


>d2a6na1 c.1.10.1 (A:1-292) Dihydrodipicolinate synthase
          {Escherichia coli [TaxId: 562]}
          Length = 292

 Score = 24.9 bits (53), Expect = 2.4
 Identities = 6/31 (19%), Positives = 12/31 (38%)

Query: 52 GEATESSDEEHKRVDFRYLFIQNHPHRCLQC 82
          GE+   + +EH  V    L + +     +  
Sbjct: 46 GESATLNHDEHADVVMMTLDLADGRIPVIAG 76


>d1r8ha_ d.58.8.1 (A:) Papillomavirus-1 E2 protein {Human
          papillomavirus type 6a [TaxId: 37122]}
          Length = 87

 Score = 23.8 bits (52), Expect = 3.3
 Identities = 7/30 (23%), Positives = 10/30 (33%)

Query: 67 FRYLFIQNHPHRCLQCGTSWANKGPTGTFR 96
          FRY     H H      ++W    P    +
Sbjct: 19 FRYRLNDKHRHLFDLISSTWHWASPKAPHK 48


>d1v54f_ g.41.5.3 (F:) Cytochrome c oxidase Subunit F {Cow (Bos
          taurus) [TaxId: 9913]}
          Length = 98

 Score = 23.2 bits (50), Expect = 6.8
 Identities = 5/12 (41%), Positives = 6/12 (50%)

Query: 73 QNHPHRCLQCGT 84
          +    RC  CGT
Sbjct: 76 KGEAQRCPSCGT 87


>d1ylea1 d.108.1.8 (A:1-338) Arginine N-succinyltransferase, alpha
           chain, AstA {Pseudomonas aeruginosa [TaxId: 287]}
          Length = 338

 Score = 23.5 bits (51), Expect = 7.1
 Identities = 6/11 (54%), Positives = 8/11 (72%)

Query: 68  RYLFIQNHPHR 78
           R LF+ +HP R
Sbjct: 145 RLLFMASHPER 155


>d3c8ya2 d.15.4.2 (A:1-126) Fe-only hydrogenase, N-terminal domain
           {Clostridium pasteurianum [TaxId: 1501]}
          Length = 126

 Score = 23.4 bits (50), Expect = 7.3
 Identities = 6/28 (21%), Positives = 8/28 (28%)

Query: 55  TESSDEEHKRVDFRYLFIQNHPHRCLQC 82
           T S     K        +  H  +C  C
Sbjct: 74  TNSDAVNEKIKSRISQLLDIHEFKCGPC 101


>d1b5qa2 d.16.1.5 (A:294-405) Polyamine oxidase {Maize (Zea mays)
          [TaxId: 4577]}
          Length = 112

 Score = 22.8 bits (48), Expect = 9.0
 Identities = 6/52 (11%), Positives = 15/52 (28%)

Query: 39 LEYEKPVWSDSSDGEATESSDEEHKRVDFRYLFIQNHPHRCLQCGTSWANKG 90
          L++ +  W +    E    +            F + +P   +   T    + 
Sbjct: 10 LKFPRKFWPEGKGREFFLYASSRRGYYGVWQEFEKQYPDANVLLVTVTDEES 61


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.132    0.403 

Gapped
Lambda     K      H
   0.267   0.0575    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 391,897
Number of extensions: 15566
Number of successful extensions: 55
Number of sequences better than 10.0: 1
Number of HSP's gapped: 55
Number of HSP's successfully gapped: 11
Length of query: 112
Length of database: 2,407,596
Length adjustment: 71
Effective length of query: 41
Effective length of database: 1,432,766
Effective search space: 58743406
Effective search space used: 58743406
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.2 bits)