BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6201
(220 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1ORE|A Chain A, Human Adenine Phosphoribosyltransferase
pdb|1ZN7|A Chain A, Human Adenine Phosphoribosyltransferase Complexed With
Prpp, Ade And R5p
pdb|1ZN7|B Chain B, Human Adenine Phosphoribosyltransferase Complexed With
Prpp, Ade And R5p
pdb|1ZN8|A Chain A, Human Adenine Phosphoribosyltransferase Complexed With
Amp, In Space Group P1 At 1.76 A Resolution
pdb|1ZN8|B Chain B, Human Adenine Phosphoribosyltransferase Complexed With
Amp, In Space Group P1 At 1.76 A Resolution
pdb|1ZN9|A Chain A, Human Adenine Phosphoribosyltransferase In Apo And Amp
Complexed Forms
pdb|1ZN9|B Chain B, Human Adenine Phosphoribosyltransferase In Apo And Amp
Complexed Forms
Length = 180
Score = 97.1 bits (240), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 69/193 (35%), Positives = 102/193 (52%), Gaps = 38/193 (19%)
Query: 34 YSTPGFLSPPRDIFSVYRDQAA-STALHCLLKCYALSLKDKIDVVYAIESRGFLFGPYIG 92
+ TPG + RDI V +D A+ A+ L + + +ID + ++SRGFLFGP +
Sbjct: 19 FPTPGVVF--RDISPVLKDPASFRAAIGLLARHLKATHGGRIDYIAGLDSRGFLFGPSLA 76
Query: 93 QVLDIPFVPIRKKGKLPGVVERLEYGLEYGTVLDIPFVPIRKKGKLPGVVERLEYGLEYG 152
Q L + V IRK+GKLPG Y LEYG K +L
Sbjct: 77 QELGLGCVLIRKRGKLPGPTLWASYSLEYG------------KAEL-------------- 110
Query: 153 TDCIEVQKDGGKAGKKALIVDDLIATG----ASCQLLTTLGVDVVECFAVMELKDLNGRQ 208
E+QKD + G++ ++VDDL+ATG A+C+LL L +V+EC +++EL L GR+
Sbjct: 111 ----EIQKDALEPGQRVVVVDDLLATGGTMNAACELLGRLQAEVLECVSLVELTSLKGRE 166
Query: 209 KV-PSKVVSLLEF 220
K+ P SLL++
Sbjct: 167 KLAPVPFFSLLQY 179
>pdb|1G2Q|A Chain A, Crystal Structure Of Adenine Phosphoribosyltransferase
pdb|1G2Q|B Chain B, Crystal Structure Of Adenine Phosphoribosyltransferase
pdb|1G2P|A Chain A, Crystal Structure Of Adenine Phosphoribosyltransferase
Length = 187
Score = 80.5 bits (197), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 62/199 (31%), Positives = 91/199 (45%), Gaps = 45/199 (22%)
Query: 32 ATYSTPGFLSPP---RDIFSVYRDQAASTALHCLLKCYALSLKD-----KIDVVYAIESR 83
A + P F S D ++R+ L+ + L L++ KID + +ESR
Sbjct: 13 ALHQYPNFPSEGILFEDFLPIFRNPGL---FQKLIDAFKLHLEEAFPEVKIDYIVGLESR 69
Query: 84 GFLFGPYIGQVLDIPFVPIRKKGKLPGVVERLEYGLEYGTVLDIPFVPIRKKGKLPGVVE 143
GFLFGP + L + FVP+RK GKLPG
Sbjct: 70 GFLFGPTLA------------------------------LALGVGFVPVRKAGKLPGECF 99
Query: 144 RLEYGLEYGTDCIEVQKDGGKAGKKALIVDDLI----ATGASCQLLTTLGVDVVECFAVM 199
+ Y EYG+D E+QK+ AG +IVDD+I + A+ +L+ L +++E VM
Sbjct: 100 KATYEKEYGSDLFEIQKNAIPAGSNVIIVDDIIATGGSAAAAGELVEQLEANLLEYNFVM 159
Query: 200 ELKDLNGRQKVPSKVVSLL 218
EL L GR K+ + V +LL
Sbjct: 160 ELDFLKGRSKLNAPVFTLL 178
>pdb|2DY0|A Chain A, Crystal Structure Of Project Jw0458 From Escherichia Coli
pdb|2DY0|B Chain B, Crystal Structure Of Project Jw0458 From Escherichia Coli
Length = 190
Score = 76.6 bits (187), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 63/188 (33%), Positives = 90/188 (47%), Gaps = 40/188 (21%)
Query: 34 YSTPGFLSPPRDIFSVYRD-QAASTALHCLLKCYALSLKDKIDVVYAIESRGFLFGPYIG 92
Y PG L RD+ S+ D +A + ++ L++ Y I V E+RGFLFG
Sbjct: 28 YPKPGILF--RDVTSLLEDPKAYALSIDLLVERYK---NAGITKVVGTEARGFLFG---- 78
Query: 93 QVLDIPFVPIRKKGKLPGVVERLEYGLEYGTVLDIPFVPIRKKGKLPGVVERLEYGLEYG 152
P+ GL G FVP+RK GKLP Y LEYG
Sbjct: 79 -------APV-------------ALGLGVG------FVPVRKPGKLPRETISETYDLEYG 112
Query: 153 TDCIEVQKDGGKAGKKALIVDDLIATG----ASCQLLTTLGVDVVECFAVMELKDLNGRQ 208
TD +E+ D K G K L+VDDL+ATG A+ +L+ LG +V + ++ L DL G Q
Sbjct: 113 TDQLEIHVDAIKPGDKVLVVDDLLATGGTIEATVKLIRRLGGEVADAAFIINLFDLGGEQ 172
Query: 209 KVPSKVVS 216
++ + ++
Sbjct: 173 RLEKQGIT 180
>pdb|1L1Q|A Chain A, Crystal Structure Of Aprtase From Giardia Lamblia
Complexed With 9- Deazaadenine
pdb|1L1R|A Chain A, Crystal Structure Of Aprtase From Giardia Lamblia
Complexed With 9- Deazaadenine, Mg2+ And Prpp
Length = 186
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/151 (31%), Positives = 67/151 (44%), Gaps = 35/151 (23%)
Query: 74 IDVVYAIESRGFLFGPYIGQVLDIPFVPIRKKGKLPGVVERLEYGLEYGTVLDIPFVPIR 133
I V IESRGF+ G + L + FV +RK GKLPG V + + +EY
Sbjct: 54 ITKVVGIESRGFILGGIVANSLGVGFVALRKAGKLPGDVCKCTFDMEY------------ 101
Query: 134 KKGKLPGVVERLEYGLEYGTDCIEVQKDGGKAGKKALIVDDLIATG----ASCQLLTTLG 189
+KG IEVQK L+ DD++ATG A+ +L T G
Sbjct: 102 QKGV-----------------TIEVQKRQLGPHDVVLLHDDVLATGGTLLAAIELCETAG 144
Query: 190 V--DVVECFAVMELKDLNGRQKVPSKVVSLL 218
V + + + E++ L GR+KV K L
Sbjct: 145 VKPENIYINVLYEIEALKGREKVGQKCTRLF 175
>pdb|1QB7|A Chain A, Crystal Structures Of Adenine Phosphoribosyltransferase
From Leishmania Donovani.
pdb|1QB8|A Chain A, Crystal Structures Of Adenine Phosphoribosyltransferase
From Leishmania Donovani
pdb|1QCC|A Chain A, Crystal Structures Of Adenine Phosphoribosyltransferase
From Leishmania Donovani
pdb|1QCD|A Chain A, Crystal Structures Of Adenine Phosphoribosyltransferase
From Leishmania Donovani
Length = 236
Score = 50.4 bits (119), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 68/145 (46%), Gaps = 32/145 (22%)
Query: 77 VYAIESRGFLFGPYIGQVLDIPFVPIRKKGKLPGVVERLE-YGLEYGTVLDIPFVPIRKK 135
+ ++RGFLFGP I L+IPFV +RK K G++ R E Y EY K
Sbjct: 75 ILGFDARGFLFGPMIAVELEIPFVLMRKADKNAGLLIRSEPYEKEY-------------K 121
Query: 136 GKLPGVVERLEYGLEYGTDCIEVQKDGGKAGKKALIVDDLIATGASC----QLLTTLGVD 191
P V+ + YG+ GK G + +++DD++ATG + QL+
Sbjct: 122 EAAPEVMT-----IRYGSI--------GK-GSRVVLIDDVLATGGTALSGLQLVEASDAV 167
Query: 192 VVECFAVMELKDLNGRQKVPSKVVS 216
VVE +++ + L +K+ S S
Sbjct: 168 VVEMVSILSIPFLKAAEKIHSTANS 192
>pdb|1MZV|A Chain A, Crystal Structure Of Adenine Phosphoribosyltransferase
(Aprt) From Leishmania Tarentolae
Length = 235
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 64/144 (44%), Gaps = 38/144 (26%)
Query: 77 VYAIESRGFLFGPYIGQVLDIPFVPIRKKGKLPGVVERLEYGLEYGTVLDIPFVPIRKKG 136
+ ++RGFLFGP I VE L IPFV +RK
Sbjct: 76 ILGFDARGFLFGPMIA-------------------VE-----------LGIPFVLMRKAD 105
Query: 137 KLPGVVERLE-YGLEYGTDCIEVQK-DGGKAGK--KALIVDDLIATGASC----QLLTTL 188
K G++ R E Y EY EV G GK + +++DD++ATG + QL+
Sbjct: 106 KNAGLLIRSEPYEKEYKEAAPEVMTIRHGSIGKNSRVVLIDDVLATGGTALSGLQLVEAS 165
Query: 189 GVDVVECFAVMELKDLNGRQKVPS 212
G +VVE +++ + L +++ S
Sbjct: 166 GAEVVEMVSILTIPFLKAAERIHS 189
>pdb|3M3H|A Chain A, 1.75 Angstrom Resolution Crystal Structure Of An Orotate
Phosphoribosyltransferase From Bacillus Anthracis Str.
'ames Ancestor'
pdb|3OSC|A Chain A, 2.65 Angstrom Resolution Crystal Structure Of An Orotate
Phosphoribosyltransferase From Bacillus Anthracis Str.
'ames Ancestor' In Complex With
5-Phospho-Alpha-D-Ribosyl Diphosphate (Prpp)
pdb|3OSC|B Chain B, 2.65 Angstrom Resolution Crystal Structure Of An Orotate
Phosphoribosyltransferase From Bacillus Anthracis Str.
'ames Ancestor' In Complex With
5-Phospho-Alpha-D-Ribosyl Diphosphate (Prpp)
pdb|3OSC|C Chain C, 2.65 Angstrom Resolution Crystal Structure Of An Orotate
Phosphoribosyltransferase From Bacillus Anthracis Str.
'ames Ancestor' In Complex With
5-Phospho-Alpha-D-Ribosyl Diphosphate (Prpp)
Length = 234
Score = 30.4 bits (67), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 46/98 (46%), Gaps = 22/98 (22%)
Query: 125 LDIPFVPIRKKGKLPGVVERLEYGLEYGTDCIEVQKDGGKA--GKKALIVDDLIATGASC 182
+D+P +R K K G ++E GKA G+K ++V+DLI+TG S
Sbjct: 110 MDLPMCYVRSKAKGHGKGNQIE----------------GKAEKGQKVVVVEDLISTGGSA 153
Query: 183 ----QLLTTLGVDVVECFAVMELKDLNGRQKVPSKVVS 216
+ L G +V+ ++ + G++K+ + V+
Sbjct: 154 ITCVEALREAGCEVLGIVSIFTYELEAGKEKLEAANVA 191
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.141 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,898,205
Number of Sequences: 62578
Number of extensions: 296185
Number of successful extensions: 597
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 578
Number of HSP's gapped (non-prelim): 19
length of query: 220
length of database: 14,973,337
effective HSP length: 95
effective length of query: 125
effective length of database: 9,028,427
effective search space: 1128553375
effective search space used: 1128553375
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)