RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy6201
(220 letters)
>gnl|CDD|235028 PRK02304, PRK02304, adenine phosphoribosyltransferase; Provisional.
Length = 175
Score = 141 bits (359), Expect = 1e-42
Identities = 68/183 (37%), Positives = 90/183 (49%), Gaps = 39/183 (21%)
Query: 44 RDIFSVYRDQAA-STALHCLLKCYALSLKDKIDVVYAIESRGFLFGPYIGQVLDIPFVPI 102
RDI + D A + L++ Y ID + IE+RGF+FG + L I FVP+
Sbjct: 24 RDITPLLADPEAFREVIDALVERYK---DADIDKIVGIEARGFIFGAALAYKLGIGFVPV 80
Query: 103 RKKGKLPGVVERLEYGLEYGTVLDIPFVPIRKKGKLPGVVERLEYGLEYGTDCIEVQKDG 162
RK GKLP T+ Y LEYGTD +E+ KD
Sbjct: 81 RKPGKLPR-----------ETI-------------------SESYELEYGTDTLEIHKDA 110
Query: 163 GKAGKKALIVDDLIATG----ASCQLLTTLGVDVVECFAVMELKDLNGRQKVPS-KVVSL 217
K G + LIVDDL+ATG A+ +LL LG +VV V+EL DL GR+K+ V SL
Sbjct: 111 IKPGDRVLIVDDLLATGGTLEAAIKLLERLGAEVVGAAFVIELPDLGGREKLEGYPVKSL 170
Query: 218 LEF 220
++F
Sbjct: 171 VKF 173
>gnl|CDD|233267 TIGR01090, apt, adenine phosphoribosyltransferase. A phylogenetic
analysis suggested omitting the bi-directional best hit
homologs from the spirochetes from the seed for This
model and making only tentative predictions of adenine
phosphoribosyltransferase function for this lineage. The
trusted cutoff score is made high for this reason. Most
proteins scoring between the trusted and noise cutoffs
are likely to act as adenine phosphotransferase
[Purines, pyrimidines, nucleosides, and nucleotides,
Salvage of nucleosides and nucleotides].
Length = 169
Score = 130 bits (328), Expect = 3e-38
Identities = 68/193 (35%), Positives = 90/193 (46%), Gaps = 40/193 (20%)
Query: 34 YSTPGFLSPPRDIFSVYRDQAASTALHCLLKCYALSLKDKIDVVYAIESRGFLFGPYIGQ 93
+ G L RDI + + L LL ID + E+RGF+FG +
Sbjct: 11 FPKKGILF--RDITPLLNNPELFRFLIDLLVERYKDAN--IDYIVGPEARGFIFGAALAY 66
Query: 94 VLDIPFVPIRKKGKLPGVVERLEYGLEYGTVLDIPFVPIRKKGKLPGVVERLEYGLEYGT 153
L + FVP+RK GKLPG Y LEYG
Sbjct: 67 KLGVGFVPVRK------------------------------PGKLPGETISASYDLEYGK 96
Query: 154 DCIEVQKDGGKAGKKALIVDDLIATG----ASCQLLTTLGVDVVECFAVMELKDLNGRQK 209
D +E+ KD K G++ LIVDDL+ATG A+ +L+ LG +VVE ++ELKDLNGR K
Sbjct: 97 DQLEIHKDAIKPGQRVLIVDDLLATGGTAEATDELIRKLGGEVVEAAFLIELKDLNGRAK 156
Query: 210 VPSKVV--SLLEF 220
+ V SLLE+
Sbjct: 157 LEPNVPVFSLLEY 169
>gnl|CDD|177930 PLN02293, PLN02293, adenine phosphoribosyltransferase.
Length = 187
Score = 118 bits (298), Expect = 1e-33
Identities = 60/145 (41%), Positives = 78/145 (53%), Gaps = 34/145 (23%)
Query: 73 KIDVVYAIESRGFLFGPYIGQVLDIPFVPIRKKGKLPGVVERLEYGLEYGTVLDIPFVPI 132
I VV IE+RGF+FGP I + FVP+RK GKLPG V
Sbjct: 62 GISVVAGIEARGFIFGPPIALAIGAKFVPLRKPGKLPGEV-------------------- 101
Query: 133 RKKGKLPGVVERLEYGLEYGTDCIEVQKDGGKAGKKALIVDDLIATG----ASCQLLTTL 188
+ E EY LEYGTDC+E+ + G++AL++DDLIATG A+ LL
Sbjct: 102 --------ISE--EYVLEYGTDCLEMHVGAVEPGERALVIDDLIATGGTLCAAINLLERA 151
Query: 189 GVDVVECFAVMELKDLNGRQKVPSK 213
G +VVEC V+EL +L GR+K+ K
Sbjct: 152 GAEVVECACVIELPELKGREKLNGK 176
>gnl|CDD|223577 COG0503, Apt, Adenine/guanine phosphoribosyltransferases and
related PRPP-binding proteins [Nucleotide transport and
metabolism].
Length = 179
Score = 103 bits (258), Expect = 1e-27
Identities = 52/151 (34%), Positives = 75/151 (49%), Gaps = 34/151 (22%)
Query: 72 DKIDVVYAIESRGFLFGPYIGQVLDIPFVPIRKKGKLPGVVERLEYGLEYGTVLDIPFVP 131
D ID + IE+RG + L +PFVP+RKKGKLP +V++
Sbjct: 52 DGIDKIVTIEARGIPLAAAVALELGVPFVPVRKKGKLPE-----------ESVVE----- 95
Query: 132 IRKKGKLPGVVERLEYGLEYGTDCIEVQKDGGKAGKKALIVDDLIATG----ASCQLLTT 187
Y LEYG++ +E+ KD K G + LIVDDL+ATG A +LL
Sbjct: 96 --------------TYYLEYGSETLELHKDALKPGDRVLIVDDLLATGGTALALIELLEQ 141
Query: 188 LGVDVVECFAVMELKDLNGRQKVPSKVVSLL 218
G +VV V+EL +L+GR+K+ + +
Sbjct: 142 AGAEVVGAAFVIELGELDGRKKLEDDGLPVF 172
>gnl|CDD|206754 cd06223, PRTases_typeI, Phosphoribosyl transferase (PRT)-type I
domain. Phosphoribosyl transferase (PRT) domain. The
type I PRTases are identified by a conserved PRPP
binding motif which features two adjacent acidic
residues surrounded by one or more hydrophobic residue.
PRTases catalyze the displacement of the
alpha-1'-pyrophosphate of
5-phosphoribosyl-alpha1-pyrpphosphate (PRPP) by a
nitrogen-containing nucleophile. The reaction products
are an alpha-1 substituted ribose-5'-phosphate and a
free pyrophosphate (PP). PRPP, an activated form of
ribose-5-phosphate, is a key metabolite connecting
nucleotide synthesis and salvage pathways. The type I
PRTase family includes a range of diverse phosphoribosyl
transferase enzymes and regulatory proteins of the
nucleotide synthesis and salvage pathways, including
adenine phosphoribosyltransferase EC:2.4.2.7.,
hypoxanthine-guanine-xanthine phosphoribosyltransferase,
hypoxanthine phosphoribosyltransferase EC:2.4.2.8.,
ribose-phosphate pyrophosphokinase EC:2.7.6.1.,
amidophosphoribosyltransferase EC:2.4.2.14., orotate
phosphoribosyltransferase EC:2.4.2.10., uracil
phosphoribosyltransferase EC:2.4.2.9., and
xanthine-guanine phosphoribosyltransferase EC:2.4.2.22.
Length = 130
Score = 66.7 bits (163), Expect = 3e-14
Identities = 34/148 (22%), Positives = 50/148 (33%), Gaps = 41/148 (27%)
Query: 66 YALSLKDKIDVVYAIESRGFLFGPYIGQVLDIPFVPIRKKGKLPGVVERLEYGLEYGTVL 125
+ DVV I G + + L +P IRK+ K PG YGLE
Sbjct: 8 EIREDLLEPDVVVGILRGGLPLAAALARALGLPLAFIRKERKGPGRTPSEPYGLELPLGG 67
Query: 126 DIPFVPIRKKGKLPGVVERLEYGLEYGTDCIEVQKDGGKAGKKALIVDDLIATGAS---- 181
D+ GK+ L+VDD+IATG +
Sbjct: 68 DVK-------------------------------------GKRVLLVDDVIATGGTLLAA 90
Query: 182 CQLLTTLGVDVVECFAVMELKDLNGRQK 209
+LL G VV +++ + R+
Sbjct: 91 IELLKEAGAKVVGVAVLLDKPEGGAREL 118
>gnl|CDD|183595 PRK12560, PRK12560, adenine phosphoribosyltransferase; Provisional.
Length = 187
Score = 57.1 bits (138), Expect = 3e-10
Identities = 28/144 (19%), Positives = 50/144 (34%), Gaps = 38/144 (26%)
Query: 73 KIDVVYAIESRGFLFGPYIGQVLDIPFVPIRKKGKLPGVVERLEYGLEYGTVLDIPFVPI 132
ID + E +G + + P+ P + L Y +
Sbjct: 51 DIDKIVTEEDKGAPLATPVSL---LSGKPLAMARWYPYSLSELNYNV------------- 94
Query: 133 RKKGKLPGVVERLEYGLEYGTDCIE--VQKDGGKAGKKALIVDDLIATG----ASCQLLT 186
+E G++ E V +G + G + I+DD ++TG A + +
Sbjct: 95 ----------------VEIGSEYFEGVVYLNGIEKGDRVAIIDDTLSTGGTVIALIKAIE 138
Query: 187 TLGVDVVECFAVMELKDLNGRQKV 210
G V + V+E NGR+K+
Sbjct: 139 NSGGIVSDVICVIEKTQNNGRKKL 162
>gnl|CDD|215757 pfam00156, Pribosyltran, Phosphoribosyl transferase domain. This
family includes a range of diverse phosphoribosyl
transferase enzymes. This family includes: Adenine
phosphoribosyltransferase EC:2.4.2.7.
Hypoxanthine-guanine-xanthine phosphoribosyltransferase.
Hypoxanthine phosphoribosyltransferase EC:2.4.2.8.
Ribose-phosphate pyrophosphokinase i EC:2.7.6.1.
Amidophosphoribosyltransferase EC:2.4.2.14. Orotate
phosphoribosyltransferase EC:2.4.2.10. Uracil
phosphoribosyltransferase EC:2.4.2.9. Xanthine-guanine
phosphoribosyltransferase EC:2.4.2.22. In Arabidopsis,
At the very N-terminus of this domain is the P-Loop
NTPase domain.
Length = 123
Score = 47.0 bits (112), Expect = 5e-07
Identities = 25/133 (18%), Positives = 39/133 (29%), Gaps = 38/133 (28%)
Query: 71 KDKIDVVYAIESRGFLFGPYIGQVLDIPFVPIRKKGKLPGVVERLEYGLEYGTVLDIPFV 130
DV+ I G + + L IP V +RK P
Sbjct: 25 GIDPDVIVGIARGGIPLATALARELGIPLVLVRKSRSYPSS------------------- 65
Query: 131 PIRKKGKLPGVVERLEYGLEYGTDCIEVQKDGGKAGKKALIVDDLIATGAS----CQLLT 186
+ + + GK+ LIVDD++ TG + +LL
Sbjct: 66 ---------------IKSRGGESVTLLSRLPELLKGKRVLIVDDVLDTGGTLRAAVELLK 110
Query: 187 TLGVDVVECFAVM 199
G VV ++
Sbjct: 111 KAGAKVVGVAVLV 123
>gnl|CDD|234771 PRK00455, pyrE, orotate phosphoribosyltransferase; Validated.
Length = 202
Score = 34.7 bits (81), Expect = 0.019
Identities = 23/94 (24%), Positives = 38/94 (40%), Gaps = 27/94 (28%)
Query: 118 GLEYGTV---------LDIPFVPIRKKGKLPGVVERLEYGLEYGTDCIEVQKDGGKAGKK 168
G G + LD+P + +RK+ K G ++E G GK+
Sbjct: 70 GPATGGIPLAAAVARALDLPAIFVRKEAKDHGEGGQIE-GRR-------------LFGKR 115
Query: 169 ALIVDDLIATGAS----CQLLTTLGVDVVECFAV 198
L+V+D+I TG S + + G +VV +
Sbjct: 116 VLVVEDVITTGGSVLEAVEAIRAAGAEVVGVAVI 149
>gnl|CDD|235678 PRK06031, PRK06031, phosphoribosyltransferase; Provisional.
Length = 233
Score = 34.3 bits (79), Expect = 0.026
Identities = 12/40 (30%), Positives = 22/40 (55%), Gaps = 4/40 (10%)
Query: 165 AGKKALIVDDLIATGASC----QLLTTLGVDVVECFAVME 200
G++ ++DD+I++GAS +LL G++ A M
Sbjct: 153 EGRRVALIDDVISSGASIVAGLRLLAACGIEPAGIGAAML 192
>gnl|CDD|238149 cd00245, Glm_e, Coenzyme B12-dependent glutamate mutase epsilon
subunit-like family; contains proteins similar to
Clostridium cochlearium glutamate mutase (Glm) and
Streptomyces tendae Tu901 NikV. Glm catalyzes a
carbon-skeleton rearrangement of L-glutamate to
L-threo-3-methylaspartate. The first step in the
catalysis is a homolytic cleavage of the Co-C bond of
the coenzyme B12 cofactor to generate a 5'-deoxyadenosyl
radical. This radical then initiates the rearrangement
reaction. C. cochlearium Glm is a sigma2epsilon2
heterotetramer. Glm plays a role in glutamate
fermentation in Clostridium sp. and in members of the
family Enterobacteriaceae, and in the synthesis of the
lipopeptide antibiotic friulimicin in Actinoplanes
friuliensis. S. tendae Tu901 glutamate mutase-like
proteins NikU and NIkV participate in the synthesis of
the peptidyl nucleoside antibiotic nikkomycin. NikU and
NikV proteins have sequence similarity to Clostridium
Glm sigma and epsilon components respectively, and may
catalyze the rearrangement of 2-oxoglutaric acid to
2-keto-3-methylsuccinic acid during nikkomycin
synthesis.
Length = 428
Score = 33.9 bits (78), Expect = 0.051
Identities = 17/57 (29%), Positives = 24/57 (42%), Gaps = 3/57 (5%)
Query: 24 PIITRNGPATYSTPGFLSPPRDIFSVYRDQAASTALHCLLKCYALSLKDKIDVVYAI 80
P NG Y G L P DI +R + A A + LS + ID ++A+
Sbjct: 375 PARDDNGRIRYLEFGNLPIPEDIKDFHRQRLAERA---KAEGRELSFQMVIDDIFAV 428
>gnl|CDD|223537 COG0461, PyrE, Orotate phosphoribosyltransferase [Nucleotide
transport and metabolism].
Length = 201
Score = 31.8 bits (73), Expect = 0.16
Identities = 21/76 (27%), Positives = 33/76 (43%), Gaps = 20/76 (26%)
Query: 128 PFVPIRKKGKLPGVVERLEYGLEYGT-DCIEVQKDGGKAGKKALIVDDLIATGAS----C 182
P +RK+ K ++GT IE G G+K ++V+D+I TG S
Sbjct: 88 PMAYVRKEAK------------DHGTGGLIEG---GEVKGEKVVVVEDVITTGGSILEAV 132
Query: 183 QLLTTLGVDVVECFAV 198
+ L G +VV +
Sbjct: 133 EALREAGAEVVGVAVI 148
>gnl|CDD|130318 TIGR01251, ribP_PPkin, ribose-phosphate pyrophosphokinase.
Alternate name: phosphoribosylpyrophosphate synthetase
In some systems, close homologs lacking enzymatic
activity exist and perform regulatory functions. The
model is designated subfamily rather than equivalog for
this reason [Purines, pyrimidines, nucleosides, and
nucleotides, Purine ribonucleotide biosynthesis].
Length = 308
Score = 31.9 bits (73), Expect = 0.24
Identities = 10/20 (50%), Positives = 12/20 (60%)
Query: 160 KDGGKAGKKALIVDDLIATG 179
G GK +IVDD+I TG
Sbjct: 204 LVGDVEGKDVVIVDDIIDTG 223
>gnl|CDD|130804 TIGR01743, purR_Bsub, pur operon repressor, Bacillus subtilis type.
This model represents the puring operon repressor PurR
of low-GC Gram-positive bacteria. This homodimeric
repressor contains a large region homologous to
phosphoribosyltransferases and is inhibited by
5-phosphoribosyl 1-pyrophosphate [Purines, pyrimidines,
nucleosides, and nucleotides, Purine ribonucleotide
biosynthesis, Regulatory functions, DNA interactions].
Length = 268
Score = 30.9 bits (70), Expect = 0.41
Identities = 28/116 (24%), Positives = 47/116 (40%), Gaps = 27/116 (23%)
Query: 73 KIDVVYAIESRGFLFGPYIGQVLDIPFVPIRKKGKLPGVVERLEYGLEYGTVLDIPFVPI 132
+ID V + ++G + VL++P V +RK K V E G+ + I +V
Sbjct: 128 EIDAVMTVATKGIPLAYAVASVLNVPLVIVRKDSK---VTE--------GSTVSINYV-- 174
Query: 133 RKKGKLPGVVERLEYGLEYGTDCIEVQKDGGKAGKKALIVDDLIATGASCQLLTTL 188
G R++ + + K K G K LI+DD + G + + L
Sbjct: 175 ------SGSSNRIQT--------MSLAKRSLKTGSKVLIIDDFMKAGGTINGMINL 216
>gnl|CDD|234868 PRK00934, PRK00934, ribose-phosphate pyrophosphokinase;
Provisional.
Length = 285
Score = 30.7 bits (70), Expect = 0.49
Identities = 10/14 (71%), Positives = 12/14 (85%)
Query: 166 GKKALIVDDLIATG 179
GK LIVDD+I+TG
Sbjct: 204 GKDVLIVDDIISTG 217
>gnl|CDD|129436 TIGR00336, pyrE, orotate phosphoribosyltransferase. Orotate
phosphoribosyltransferase (OPRTase) is involved in the
biosynthesis of pyrimidine nucleotides.
Alpha-D-ribosyldiphosphate 5-phosphate (PRPP) and
orotate are utilized to form pyrophosphate and orotidine
5'-monophosphate (OMP) in the presence of divalent
cations, preferably Mg2+. In a number of eukaryotes,
this protein is fused to a domain that catalyses the
reaction (EC 4.1.1.23). The combined activity of EC
2.4.2.10 and EC 4.1.1.23 is termed uridine
5'-monophosphate synthase. The conserved Lys (K) residue
at position 101 of the seed alignment has been proposed
as the active site for the enzyme [Purines, pyrimidines,
nucleosides, and nucleotides, Pyrimidine ribonucleotide
biosynthesis].
Length = 173
Score = 30.1 bits (68), Expect = 0.55
Identities = 22/105 (20%), Positives = 42/105 (40%), Gaps = 28/105 (26%)
Query: 126 DIPFVPIRKKGKLPGVVERLEYGLEYGTDCI---EVQKDGGKAGKKALIVDDLIATGAS- 181
DIP RK+ K ++G E+ + G K ++V+D+I TG S
Sbjct: 82 DIPLCFNRKEAK------------DHGEGGNIEGELLE-----GDKVVVVEDVITTGTSI 124
Query: 182 ---CQLLTTLGVDVVECFAVMELKDLNGRQKVPS----KVVSLLE 219
+++ G V ++ ++ + Q+ V+SL+
Sbjct: 125 LEAVEIIQAAGGQVAGVIIAVDRQERSAGQEFEKEYGLPVISLIT 169
>gnl|CDD|177934 PLN02297, PLN02297, ribose-phosphate pyrophosphokinase.
Length = 326
Score = 30.4 bits (69), Expect = 0.56
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
Query: 160 KDGGKAGKKALIVDDLIATGAS---CQ-LLTTLGVDVVECFAV 198
K+G AG+ +IVDDL+ +G + CQ +L G V +
Sbjct: 224 KEGNPAGRHVVIVDDLVQSGGTLIECQKVLAAHGAAKVSAYVT 266
>gnl|CDD|223538 COG0462, PrsA, Phosphoribosylpyrophosphate synthetase [Nucleotide
transport and metabolism / Amino acid transport and
metabolism].
Length = 314
Score = 30.6 bits (70), Expect = 0.60
Identities = 10/19 (52%), Positives = 12/19 (63%)
Query: 161 DGGKAGKKALIVDDLIATG 179
G GK +IVDD+I TG
Sbjct: 209 IGDVEGKDVVIVDDIIDTG 227
>gnl|CDD|223970 COG1040, ComFC, Predicted amidophosphoribosyltransferases [General
function prediction only].
Length = 225
Score = 30.1 bits (68), Expect = 0.71
Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 4/43 (9%)
Query: 160 KDGGKAGKKALIVDDLIATGAS----CQLLTTLGVDVVECFAV 198
K G + K L+VDD+ TGA+ +LL G V +
Sbjct: 178 KKGIEEPKNVLLVDDVYTTGATLKEAAKLLREAGAKRVFVLTL 220
>gnl|CDD|181466 PRK08558, PRK08558, adenine phosphoribosyltransferase; Provisional.
Length = 238
Score = 30.0 bits (68), Expect = 0.88
Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 9/65 (13%)
Query: 164 KAGKKALIVDDLIATGASCQLLTTL----GVDVVECFAV-----MELKDLNGRQKVPSKV 214
K G + LIVDD+I +G + + L L G DVV F + + + P
Sbjct: 174 KKGDRVLIVDDIIRSGETQRALLDLARQAGADVVGVFFLIAVGEVGIDRAREETDAPVDA 233
Query: 215 VSLLE 219
+ LE
Sbjct: 234 LYTLE 238
>gnl|CDD|180714 PRK06827, PRK06827, phosphoribosylpyrophosphate synthetase;
Provisional.
Length = 382
Score = 29.9 bits (68), Expect = 1.1
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 12/43 (27%)
Query: 166 GKKALIVDDLIATGASCQLLTTLGVDVVECFAVMELKDLNGRQ 208
GK LIVDD+IA+G S +D + ELK ++
Sbjct: 264 GKDVLIVDDMIASGGSM-------IDAAK-----ELKSRGAKK 294
>gnl|CDD|237519 PRK13812, PRK13812, orotate phosphoribosyltransferase; Provisional.
Length = 176
Score = 29.0 bits (65), Expect = 1.5
Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 23/73 (31%)
Query: 123 TVLDIPFVPIRKKGKLPGVVERLEYGLEYGT-DCIEVQKDGGKAGKKALIVDDLIATGAS 181
+P+V RK+ K EYGT + IE + D G++ ++++D+ TG S
Sbjct: 78 VETGVPYVIARKQAK------------EYGTGNRIEGRLD---EGEEVVVLEDIATTGQS 122
Query: 182 CQLLTTLGVDVVE 194
VD VE
Sbjct: 123 -------AVDAVE 128
>gnl|CDD|236414 PRK09213, PRK09213, pur operon repressor; Provisional.
Length = 271
Score = 29.0 bits (66), Expect = 1.6
Identities = 12/35 (34%), Positives = 20/35 (57%)
Query: 73 KIDVVYAIESRGFLFGPYIGQVLDIPFVPIRKKGK 107
KID V +E++G + L++PFV +R+ K
Sbjct: 130 KIDAVMTVETKGIPLAYAVANYLNVPFVIVRRDSK 164
>gnl|CDD|225145 COG2236, COG2236, Predicted phosphoribosyltransferases [General
function prediction only].
Length = 192
Score = 28.5 bits (64), Expect = 1.8
Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 4/37 (10%)
Query: 166 GKKALIVDDLIATGASCQLLTTLGVDVVECFAVMELK 202
GKK LIVDD++ TG + +L ++ ++ A E++
Sbjct: 87 GKKVLIVDDIVDTGETLELA----LEELKKLAPAEVR 119
>gnl|CDD|233377 TIGR01367, pyrE_Therm, orotate phosphoribosyltransferase, Thermus
family. This model represents a distinct clade of
orotate phosphoribosyltransferases. Members include the
experimentally determined example from Thermus aquaticus
and additional examples from Caulobacter crescentus,
Helicobacter pylori, Mesorhizobium loti, and related
species [Purines, pyrimidines, nucleosides, and
nucleotides, Pyrimidine ribonucleotide biosynthesis].
Length = 187
Score = 28.2 bits (63), Expect = 3.0
Identities = 19/79 (24%), Positives = 34/79 (43%), Gaps = 15/79 (18%)
Query: 156 IEVQKDGG----------KAGKKALIVDDLIATGASC----QLLTTLGVDVVECFAVMEL 201
I +++GG K G+K + V+D++ TG S + + G VV A +
Sbjct: 85 IFAEREGGGMKLRRGFAVKPGEKFVAVEDVVTTGGSLLEAIRAIEGQGGQVV-GLACIID 143
Query: 202 KDLNGRQKVPSKVVSLLEF 220
+ G+ ++SL E
Sbjct: 144 RSQGGKPDSGVPLMSLKEL 162
>gnl|CDD|232871 TIGR00201, comF, comF family protein. This protein is found in
species that do (Bacillus subtilis, Haemophilus
influenzae) or do not (E. coli, Borrelia burgdorferi)
have described systems for natural transformation with
exogenous DNA. It is involved in competence for
transformation in Bacillus subtilis [Cellular processes,
DNA transformation].
Length = 190
Score = 27.9 bits (62), Expect = 3.7
Identities = 12/35 (34%), Positives = 21/35 (60%), Gaps = 4/35 (11%)
Query: 166 GKKALIVDDLIATGAS----CQLLTTLGVDVVECF 196
G+ ++VDD++ TGA+ +LL LG V+ +
Sbjct: 152 GRNIVLVDDVVTTGATLHEIARLLLELGAASVQVW 186
>gnl|CDD|180928 PRK07322, PRK07322, adenine phosphoribosyltransferase; Provisional.
Length = 178
Score = 27.6 bits (62), Expect = 3.8
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 166 GKKALIVDDLIATGASCQLLTTLGVDV 192
GK+ IVDD+++TG + L L
Sbjct: 120 GKRVAIVDDVVSTGGTLTALERLVERA 146
>gnl|CDD|114961 pfam06269, DUF1029, Protein of unknown function (DUF1029). This
family consists of several short Chordopoxvirus
proteins of unknown function.
Length = 53
Score = 25.8 bits (57), Expect = 4.0
Identities = 9/19 (47%), Positives = 14/19 (73%)
Query: 68 LSLKDKIDVVYAIESRGFL 86
LS K KID+++ I+S F+
Sbjct: 24 LSRKAKIDIIFFIQSIVFM 42
>gnl|CDD|235039 PRK02458, PRK02458, ribose-phosphate pyrophosphokinase;
Provisional.
Length = 323
Score = 27.8 bits (62), Expect = 5.3
Identities = 10/18 (55%), Positives = 15/18 (83%)
Query: 162 GGKAGKKALIVDDLIATG 179
G AGKKA+++DD++ TG
Sbjct: 214 GDVAGKKAILIDDILNTG 231
>gnl|CDD|224837 COG1926, COG1926, Predicted phosphoribosyltransferases [General
function prediction only].
Length = 220
Score = 27.3 bits (61), Expect = 6.4
Identities = 9/18 (50%), Positives = 13/18 (72%)
Query: 164 KAGKKALIVDDLIATGAS 181
G+ ++VDD IATGA+
Sbjct: 122 LKGRTVILVDDGIATGAT 139
>gnl|CDD|185656 PTZ00478, PTZ00478, Sec superfamily; Provisional.
Length = 81
Score = 25.8 bits (57), Expect = 7.3
Identities = 21/84 (25%), Positives = 35/84 (41%), Gaps = 15/84 (17%)
Query: 20 QQPEPIITRNGPATYSTPGFLSPPRDIFSVYRDQAA-STALHCLLKCYALSLKDKIDVVY 78
PE + ++ P Y + S ++ A S L + KC K+ ++ Y
Sbjct: 4 GLPEFLTDKSNPVGY-----------VVSGVQEFANDSRRL--IRKCTKPDAKEYTNIAY 50
Query: 79 AIESRGFLFGPYIGQVLDIPFVPI 102
A S GF +IG + + F+PI
Sbjct: 51 AC-SVGFFIMGFIGYSIKLVFIPI 73
>gnl|CDD|219686 pfam07992, Pyr_redox_2, Pyridine nucleotide-disulphide
oxidoreductase. This family includes both class I and
class II oxidoreductases and also NADH oxidases and
peroxidases. This domain is actually a small NADH
binding domain within a larger FAD binding domain.
Length = 283
Score = 26.9 bits (60), Expect = 7.6
Identities = 27/155 (17%), Positives = 51/155 (32%), Gaps = 30/155 (19%)
Query: 66 YALSLKDKIDVVYAIESRGFLFGP----YIGQVLDIPFVPIRKKGKLPGVVERLEYGLEY 121
L K+ ++ + G + +V + + I V + +
Sbjct: 17 RLARLGLKVALIEREGGTCYNRGCLPKKLLLEVAEGLELAIGLALP-EEVYKEFGVEVLL 75
Query: 122 GT-VLDIPFVPIRKKGKLPGVVERLEYGLEYGTDCIEVQKDGGKAGKKALIVDDLIATGA 180
GT V+DI R + + + Y LI IATGA
Sbjct: 76 GTEVVDI----DRGEKTVVLKDVETGREITY----------------DKLI----IATGA 111
Query: 181 SCQLLTTLGVDVVECFAVMELKDLNGRQKVPSKVV 215
++ GV+V V++ ++ ++P +VV
Sbjct: 112 RPRIPGIPGVEVATLRGVIDSDEILELLELPKRVV 146
>gnl|CDD|235023 PRK02277, PRK02277, orotate phosphoribosyltransferase-like protein;
Provisional.
Length = 200
Score = 26.8 bits (60), Expect = 8.0
Identities = 8/17 (47%), Positives = 13/17 (76%)
Query: 165 AGKKALIVDDLIATGAS 181
GK+ +IVDD+I +G +
Sbjct: 139 EGKRCVIVDDVITSGTT 155
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.141 0.419
Gapped
Lambda K H
0.267 0.0703 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 11,452,081
Number of extensions: 1110267
Number of successful extensions: 837
Number of sequences better than 10.0: 1
Number of HSP's gapped: 825
Number of HSP's successfully gapped: 44
Length of query: 220
Length of database: 10,937,602
Length adjustment: 93
Effective length of query: 127
Effective length of database: 6,812,680
Effective search space: 865210360
Effective search space used: 865210360
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (25.8 bits)