RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6201
(220 letters)
>1g2q_A Adenine phosphoribosyltransferase 1; dimer, single domain,
catalytic loop; 1.50A {Saccharomyces cerevisiae} SCOP:
c.61.1.1 PDB: 1g2p_A
Length = 187
Score = 158 bits (403), Expect = 2e-49
Identities = 58/183 (31%), Positives = 84/183 (45%), Gaps = 36/183 (19%)
Query: 44 RDIFSVYRDQAA-STALHCLLKCYALSLKD-KIDVVYAIESRGFLFGPYIGQVLDIPFVP 101
D ++R+ + + + KID + +ESRGFLFGP
Sbjct: 28 EDFLPIFRNPGLFQKLIDAFKLHLEEAFPEVKIDYIVGLESRGFLFGP-----------T 76
Query: 102 IRKKGKLPGVVERLEYGLEYGTVLDIPFVPIRKKGKLPGVVERLEYGLEYGTDCIEVQKD 161
+ L + FVP+RK GKLPG + Y EYG+D E+QK+
Sbjct: 77 LALA-------------------LGVGFVPVRKAGKLPGECFKATYEKEYGSDLFEIQKN 117
Query: 162 GGKAGKKALIVDDLIATG----ASCQLLTTLGVDVVECFAVMELKDLNGRQKVPSKVVSL 217
AG +IVDD+IATG A+ +L+ L +++E VMEL L GR K+ + V +L
Sbjct: 118 AIPAGSNVIIVDDIIATGGSAAAAGELVEQLEANLLEYNFVMELDFLKGRSKLNAPVFTL 177
Query: 218 LEF 220
L
Sbjct: 178 LNA 180
>1zn8_A APRT, adenine phosphoribosyltransferase; glycosyltransferase,
purine salvage; HET: AMP; 1.76A {Homo sapiens} SCOP:
c.61.1.1 PDB: 1ore_A* 1zn7_A* 1zn9_A*
Length = 180
Score = 156 bits (396), Expect = 2e-48
Identities = 63/183 (34%), Positives = 94/183 (51%), Gaps = 36/183 (19%)
Query: 44 RDIFSVYRDQAA-STALHCLLKCYALSLKDKIDVVYAIESRGFLFGPYIGQVLDIPFVPI 102
RDI V +D A+ A+ L + + +ID + ++SRGFLFGP + Q L + V I
Sbjct: 27 RDISPVLKDPASFRAAIGLLARHLKATHGGRIDYIAGLDSRGFLFGPSLAQELGLGCVLI 86
Query: 103 RKKGKLPGVVERLEYGLEYGTVLDIPFVPIRKKGKLPGVVERLEYGLEYGTDCIEVQKDG 162
RK +GKLPG Y LEYG +E+QKD
Sbjct: 87 RK------------------------------RGKLPGPTLWASYSLEYGKAELEIQKDA 116
Query: 163 GKAGKKALIVDDLIATG----ASCQLLTTLGVDVVECFAVMELKDLNGRQKVPS-KVVSL 217
+ G++ ++VDDL+ATG A+C+LL L +V+EC +++EL L GR+K+ SL
Sbjct: 117 LEPGQRVVVVDDLLATGGTMNAACELLGRLQAEVLECVSLVELTSLKGREKLAPVPFFSL 176
Query: 218 LEF 220
L++
Sbjct: 177 LQY 179
>2dy0_A APRT, adenine phosphoribosyltransferase; structural genomics,
NPPSFA, national project on protein structural and
functional analyses; 1.25A {Escherichia coli K12}
Length = 190
Score = 148 bits (375), Expect = 3e-45
Identities = 60/185 (32%), Positives = 85/185 (45%), Gaps = 41/185 (22%)
Query: 44 RDIFSVYRDQAA-STALHCLLKCYALSLKDKIDVVYAIESRGFLFGPYIGQVLDIPFVPI 102
RD+ S+ D A + ++ L++ Y I V E+RGFLFG P+
Sbjct: 36 RDVTSLLEDPKAYALSIDLLVERYK---NAGITKVVGTEARGFLFGA-----------PV 81
Query: 103 RKKGKLPGVVERLEYGLEYGTVLDIPFVPIRKKGKLPGVVERLEYGLEYGTDCIEVQKDG 162
L + FVP+RK GKLP Y LEYGTD +E+ D
Sbjct: 82 ALG-------------------LGVGFVPVRKPGKLPRETISETYDLEYGTDQLEIHVDA 122
Query: 163 GKAGKKALIVDDLIATG----ASCQLLTTLGVDVVECFAVMELKDLNGRQKVPS---KVV 215
K G K L+VDDL+ATG A+ +L+ LG +V + ++ L DL G Q++
Sbjct: 123 IKPGDKVLVVDDLLATGGTIEATVKLIRRLGGEVADAAFIINLFDLGGEQRLEKQGITSY 182
Query: 216 SLLEF 220
SL+ F
Sbjct: 183 SLVPF 187
>1qb7_A APRT, adenine phosphoribosyltransferase; dinucleotide binding fold;
HET: ADE CIT; 1.50A {Leishmania donovani} SCOP: c.61.1.1
PDB: 1qb8_A* 1qcc_A* 1qcd_A 1mzv_A*
Length = 236
Score = 148 bits (376), Expect = 6e-45
Identities = 40/185 (21%), Positives = 72/185 (38%), Gaps = 35/185 (18%)
Query: 44 RDIFSVYRDQAASTALHCLLKCYALSLKDKIDVVYAIESRGFLFGPYIGQVLDIPFVPIR 103
D+ S+ A+ L ++ + ++RGFLFGP I L+IPFV +R
Sbjct: 42 ADVSSITESPETLKAIRDFLVQRYRAMSPAPTHILGFDARGFLFGPMIAVELEIPFVLMR 101
Query: 104 KKGKLPG-VVERLEYGLEYGTVLDIPFVPIRKKGKLPGVVERLEYGLEYGTDCIEVQKDG 162
K K G ++ Y EY E + + ++
Sbjct: 102 KADKNAGLLIRSEPYEKEYK---------------------------EAAPEVMTIRYGS 134
Query: 163 GKAGKKALIVDDLIATG----ASCQLLTTLGVDVVECFAVMELKDLNGRQKVPS---KVV 215
G + +++DD++ATG + QL+ VVE +++ + L +K+ S
Sbjct: 135 IGKGSRVVLIDDVLATGGTALSGLQLVEASDAVVVEMVSILSIPFLKAAEKIHSTANSRY 194
Query: 216 SLLEF 220
++F
Sbjct: 195 KDIKF 199
>1l1q_A Adenine phosphoribosyltransferase; aprtase, giardia lamblia, purine
metabolism, cataly transferase; HET: 9DA; 1.85A {Giardia
intestinalis} SCOP: c.61.1.1 PDB: 1l1r_A*
Length = 186
Score = 141 bits (358), Expect = 1e-42
Identities = 49/187 (26%), Positives = 75/187 (40%), Gaps = 42/187 (22%)
Query: 44 RDIFSVYRDQAA-STALHCLLKCYALSLKDKIDVVYAIESRGFLFGPYIGQVLDIPFVPI 102
+D+ + AA + Y I V IESRGF+ G + L + FV +
Sbjct: 26 KDLSDILSTPAALDAVRKEVTAHYK---DVPITKVVGIESRGFILGGIVANSLGVGFVAL 82
Query: 103 RKKGKLPGVVERLEYGLEYGTVLDIPFVPIRKKGKLPGVVERLEYGLEYGTDCIEVQKDG 162
RK GKLPG V + + +EY + IEVQK
Sbjct: 83 RKAGKLPGDVCKCTFDMEYQKGVT-----------------------------IEVQKRQ 113
Query: 163 GKAGKKALIVDDLIATG----ASCQLLTTLG--VDVVECFAVMELKDLNGRQKVPSK--- 213
L+ DD++ATG A+ +L T G + + + E++ L GR+KV K
Sbjct: 114 LGPHDVVLLHDDVLATGGTLLAAIELCETAGVKPENIYINVLYEIEALKGREKVGQKCTR 173
Query: 214 VVSLLEF 220
+ S++
Sbjct: 174 LFSVIRE 180
>1y0b_A Xanthine phosphoribosyltransferase; purine metabolism, STRU
genomics, PSI, protein structure initative, midwest
center structural genomics; HET: G4P; 1.80A {Bacillus
subtilis} SCOP: c.61.1.1 PDB: 2fxv_A*
Length = 197
Score = 108 bits (273), Expect = 7e-30
Identities = 28/155 (18%), Positives = 41/155 (26%), Gaps = 33/155 (21%)
Query: 73 KIDVVYAIESRGFLFGPYIGQVLDIPFVPIRKKGKLPGVVERLEYGLEYGTVLDIPFVPI 132
I + IES G G L +P V RK L
Sbjct: 53 GITKIVTIESSGIAPAVMTGLKLGVPVVFARKHKSLT----------------------- 89
Query: 133 RKKGKLPGVVERLEYGLEYGTDCIEVQKDGGKAGKKALIVDDLIATG----ASCQLLTTL 188
+ + + I V LI+DD +A G ++
Sbjct: 90 ---LTDNLLTASVYSFTKQTESQIAVSGTHLSDQDHVLIIDDFLANGQAAHGLVSIVKQA 146
Query: 189 GVDVVECFAVMELKDLNGRQKVPSK---VVSLLEF 220
G + V+E GR ++ V SL
Sbjct: 147 GASIAGIGIVIEKSFQPGRDELVKLGYRVESLARI 181
>1o57_A PUR operon repressor; purine operon repressor, helix-turn-helix
domain, phosphoribosyltranseferases, domain
recombination, DNA binding; HET: EPE P6G 2PE PG4 1PE;
2.20A {Bacillus subtilis} SCOP: a.4.5.40 c.61.1.1 PDB:
1p4a_A*
Length = 291
Score = 107 bits (268), Expect = 3e-28
Identities = 31/183 (16%), Positives = 58/183 (31%), Gaps = 39/183 (21%)
Query: 35 STPGFLSPP--RDIFSVYRDQAASTALHCLLKCYALSLKDK-IDVVYAIESRGFLFGPYI 91
+ P + P + + + L + K +A ++ IDVV + ++G
Sbjct: 92 ANPERILPGGYVYLTDILGKPSV---LSKVGKLFASVFAEREIDVVMTVATKGIPLAYAA 148
Query: 92 GQVLDIPFVPIRKKGKLP-GVVERLEYGLEYGTVLDIPFVPIRKKGKLPGVVERLEYGLE 150
L++P V +RK K+ G + Y
Sbjct: 149 ASYLNVPVVIVRKDNKVTEGSTVSINYVSGSSN--------------------------- 181
Query: 151 YGTDCIEVQKDGGKAGKKALIVDDLIATG----ASCQLLTTLGVDVVECFAVMELKDLNG 206
+ + K K G LI+DD + G LL +V ++E + ++
Sbjct: 182 -RIQTMSLAKRSMKTGSNVLIIDDFMKAGGTINGMINLLDEFNANVAGIGVLVEAEGVDE 240
Query: 207 RQK 209
R
Sbjct: 241 RLV 243
>1vch_A Phosphoribosyltransferase-related protein; structural genomics,
riken structural genomics/proteomics initiative, RSGI;
1.94A {Thermus thermophilus} SCOP: c.61.1.1
Length = 175
Score = 68.6 bits (168), Expect = 7e-15
Identities = 20/162 (12%), Positives = 51/162 (31%), Gaps = 34/162 (20%)
Query: 44 RDIFSVYRDQAASTALHCLLKCYALSLKDKIDVVYAIESRGFLFGPYIGQVLDIPFVPIR 103
+ D + + + ++++ E+ + + L +P+V R
Sbjct: 26 IPLVEFLGDPEF---TRAAAEALRPLVPKEAEILFTTETSPIPLTHVLAEALGLPYVVAR 82
Query: 104 KKGKLPGVVERLEYGLEYGTVLDIPFVPIRKKGKLPGVVERLEYGLEYGTD-CIEVQKDG 162
++ + + P + E L G ++ +
Sbjct: 83 RRRRPY--------------------------MEDPIIQEVQTLTLGVGEVLWLDRRFAE 116
Query: 163 GKAGKKALIVDDLIATG----ASCQLLTTLGVDVVECFAVME 200
++ ++V D++A+G A +++ G VV AV
Sbjct: 117 KLLNQRVVLVSDVVASGETMRAMEKMVLRAGGHVVARLAVFR 158
>2wns_A Orotate phosphoribosyltransferase; alternative splicing,
multifunctional enzyme, lyase, polymorphism,
decarboxylase, phosphoprotein; HET: OMP; 1.90A {Homo
sapiens}
Length = 205
Score = 41.9 bits (99), Expect = 5e-05
Identities = 21/96 (21%), Positives = 39/96 (40%), Gaps = 31/96 (32%)
Query: 118 GLEYG---------TVLDIPFVPIRKKGKLPGVVERLEYGLEYGTD-CIEVQKDGG-KAG 166
G+ Y + IP + RK+ K +YGT +E G G
Sbjct: 68 GVPYTALPLATVICSTNQIPMLIRRKETK------------DYGTKRLVE----GTINPG 111
Query: 167 KKALIVDDLIATGAS----CQLLTTLGVDVVECFAV 198
+ LI++D++ +G+S ++L G+ V + +
Sbjct: 112 ETCLIIEDVVTSGSSVLETVEVLQKEGLKVTDAIVL 147
>2yzk_A OPRT, oprtase, orotate phosphoribosyltransferase; rossmann fold,
glycosyltransferase, magnesium, pyrimidine biosynthesis,
structural genomics; 1.80A {Aeropyrum pernix}
Length = 178
Score = 40.3 bits (95), Expect = 1e-04
Identities = 19/95 (20%), Positives = 33/95 (34%), Gaps = 30/95 (31%)
Query: 118 GLEYGTV---------LDIPFVPIRKKGKLPGVVERLEYGLEYGTD-CIEVQKDGGKAGK 167
G+ G + L P +R + K +GT +E G
Sbjct: 64 GVATGGLPWAAMLALRLSKPLGYVRPERK------------GHGTLSQVE----GDPPKG 107
Query: 168 KALIVDDLIATGAS----CQLLTTLGVDVVECFAV 198
+ ++VDD+ TG S ++L + G V +
Sbjct: 108 RVVVVDDVATTGTSIAKSIEVLRSNGYTVGTALVL 142
>2aee_A OPRT, oprtase, orotate phosphoribosyltransferase; structural
genomics, PSI, structure initiative; 1.95A
{Streptococcus pyogenes} SCOP: c.61.1.1
Length = 211
Score = 40.1 bits (94), Expect = 2e-04
Identities = 23/94 (24%), Positives = 36/94 (38%), Gaps = 27/94 (28%)
Query: 118 GLEYGTV---------LDIPFVPIRKKGKLPGVVERLEYGLEYGTDCIEVQKDGGKAGKK 168
G + + +PF IR K K G ++E G G+K
Sbjct: 74 GTATAGIPHGAIIADKMTLPFAYIRSKPKDHGAGNQIE-----GRV---------LKGQK 119
Query: 169 ALIVDDLIATGAS----CQLLTTLGVDVVECFAV 198
+I++DLI+TG S + G DV+ A+
Sbjct: 120 MVIIEDLISTGGSVLDAAAAASREGADVLGVVAI 153
>2p1z_A Phosphoribosyltransferase; STRU genomics, PSI-2, protein structure
initiative, midwest CENT structural genomics, MCSG;
2.44A {Corynebacterium diphtheriae}
Length = 180
Score = 39.5 bits (93), Expect = 2e-04
Identities = 26/96 (27%), Positives = 35/96 (36%), Gaps = 29/96 (30%)
Query: 118 GLEYGTV-----------LDIPFVPIRKKGKLPGVVERLEYGLEYGTDCIEVQKDGGKAG 166
GL G +I +RK+ K G+ R+E G D G
Sbjct: 69 GLTLGADPVATSVMHADGREIHAFVVRKEAKKHGMQRRIE-----GPD---------VVG 114
Query: 167 KKALIVDDLIATGAS----CQLLTTLGVDVVECFAV 198
KK L+V+D TG S + L G +VV V
Sbjct: 115 KKVLVVEDTTTTGNSPLTAVKALREAGAEVVGVATV 150
>3m3h_A OPRT, oprtase, orotate phosphoribosyltransferase; pyrimidine
ribonucleotide biosynthesis, structural genomics,
infectious diseases; 1.75A {Bacillus anthracis} PDB:
3osc_A*
Length = 234
Score = 39.0 bits (91), Expect = 6e-04
Identities = 20/78 (25%), Positives = 36/78 (46%), Gaps = 18/78 (23%)
Query: 125 LDIPFVPIRKKGKLPGVVERLEYGLEYGTDCIEVQKDGGKAGKKALIVDDLIATGAS--- 181
+D+P +R K K G ++E G + G+K ++V+DLI+TG S
Sbjct: 110 MDLPMCYVRSKAKGHGKGNQIE-----GKA---------EKGQKVVVVEDLISTGGSAIT 155
Query: 182 -CQLLTTLGVDVVECFAV 198
+ L G +V+ ++
Sbjct: 156 CVEALREAGCEVLGIVSI 173
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 38.5 bits (89), Expect = 0.001
Identities = 45/234 (19%), Positives = 69/234 (29%), Gaps = 111/234 (47%)
Query: 17 NLTQ--QP-----EPIITR----NGPATYSTPGFLSPPRDIF---SV--YRDQAASTALH 60
+ TQ QP E G L P F S+ Y AL
Sbjct: 1727 SATQFTQPALTLMEKAAFEDLKSKG---------LIPADATFAGHSLGEY------AALA 1771
Query: 61 CLLKCYA--LSLKDKIDVVYAIESRGFLFGPYIGQVLDIPFVPIRKKGKLPGVVERLEYG 118
L A +S++ ++VV+ RG + V R E G
Sbjct: 1772 SL----ADVMSIESLVEVVFY---RGMT---------------------MQVAVPRDELG 1803
Query: 119 LEYGTVLDIPFVPIRKKGKLPGVV------ERLEYGLEYGTDCIEVQKDGGK-------- 164
++ I PG V E L+Y +E V K G
Sbjct: 1804 RSNYGMIAI----------NPGRVAASFSQEALQYVVE------RVGKRTGWLVEIVNYN 1847
Query: 165 --------AG-KKALIVDDLIATGASCQLLTTLG---VDVVECFAVMELKDLNG 206
AG +AL D + +L + +D++E + L+++ G
Sbjct: 1848 VENQQYVAAGDLRAL--DTV------TNVLNFIKLQKIDIIELQKSLSLEEVEG 1893
Score = 35.4 bits (81), Expect = 0.013
Identities = 35/202 (17%), Positives = 58/202 (28%), Gaps = 72/202 (35%)
Query: 44 RDIFSVYRD------QAASTALHCLLKCYALSLKDKIDVVYAIESRGF-----LFGPYIG 92
RD++ Y + ++ L L++ + V+ ++G L P
Sbjct: 174 RDLYQTYHVLVGDLIKFSAETLSELIRT-----TLDAEKVF---TQGLNILEWLENP--S 223
Query: 93 QVLDIPF---VPIRKKGKLP--GVVERLEYGLEYGTVLDIPFVPIRKKGKLPGVVERLEY 147
D + +PI P GV++ Y V + G PG +
Sbjct: 224 NTPDKDYLLSIPI----SCPLIGVIQLAHY-----------VVTAKLLGFTPGELRSYLK 268
Query: 148 GLEYGTDCIEVQKDGGKAGKKALIVDDLIATGAS-----------CQLLTTLGVDVVECF 196
G T + L+ IA S +L +GV E +
Sbjct: 269 GA---TGHS-----------QGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAY 314
Query: 197 AVMEL------KDLNGRQKVPS 212
L L + VPS
Sbjct: 315 PNTSLPPSILEDSLENNEGVPS 336
>3qw4_B UMP synthase; N-terminal orotidine monophosphate decarboxylase
domain C-TE orotate phosphoribosyltransferase domain,
transferase, LYAS; HET: U5P; 3.00A {Leishmania donovani}
Length = 453
Score = 37.8 bits (88), Expect = 0.002
Identities = 24/98 (24%), Positives = 43/98 (43%), Gaps = 33/98 (33%)
Query: 118 GLEYGTV---------LDIPFVPIRKKGKLPGVVERLEYGLEYGTD-CIEVQKDGG--KA 165
GL Y + +++P + R++ K YGT IE G K
Sbjct: 322 GLPYAALPIASAISNEMNVPLIYPRREAK------------IYGTKAAIE-----GEYKK 364
Query: 166 GKKALIVDDLIATGAS----CQLLTTLGVDVVECFAVM 199
G + +I+DDL++TG + + L + G++VV ++
Sbjct: 365 GDRVVIIDDLVSTGETKVEAIEKLRSAGLEVVSIVVLV 402
>3dez_A OPRT, oprtase, orotate phosphoribosyltransferase;
glycosyltransferase, MAGN pyrimidine biosynthesis; 2.40A
{Streptococcus mutans}
Length = 243
Score = 37.5 bits (87), Expect = 0.002
Identities = 23/97 (23%), Positives = 36/97 (37%), Gaps = 33/97 (34%)
Query: 118 GLEYGTV---------LDIPFVPIRKKGKLPGVVERLEYGLEYGTD-CIEVQKDGG--KA 165
G + +++P IR K K ++G IE G
Sbjct: 106 GTATAGIPHGAIIADKMNLPLAYIRSKPK------------DHGAGNQIE-----GRVTK 148
Query: 166 GKKALIVDDLIATGAS----CQLLTTLGVDVVECFAV 198
G+K +I++DLI+TG S G DV+ A+
Sbjct: 149 GQKMVIIEDLISTGGSVLDAVAAAQREGADVLGVVAI 185
>1wd5_A Hypothetical protein TT1426; structural genomics, riken structural
genomics/proteomics initiative, RSGI, unknown function;
HET: MES; 2.00A {Thermus thermophilus} SCOP: c.61.1.1
Length = 208
Score = 36.9 bits (85), Expect = 0.002
Identities = 34/156 (21%), Positives = 56/156 (35%), Gaps = 8/156 (5%)
Query: 70 LKDKIDVVYAIESRGFLFGPYIGQVLDIPF-VPIRKKGKLPGVVER-LEYGLEYGT-VLD 126
L + VV + G + + + L V + +K PG E L E G VL
Sbjct: 20 LGLEAPVVLGLPRGGVVVADEVARRLGGELDVVLVRKVGAPGNPEFALGAVGEGGELVLM 79
Query: 127 IPFVPIRKKGKLPGVVERLEYGLEYGTDCIEVQKDGGK-AGKKALIVDDLIATGAS---- 181
+ + L R L + + G+ ++VDD +ATGAS
Sbjct: 80 PYALRYADQSYLEREAARQRDVLRKRAERYRRVRPKAARKGRDVVLVDDGVATGASMEAA 139
Query: 182 CQLLTTLGVDVVECFAVMELKDLNGRQKVPSKVVSL 217
++ G V + + R K ++VV+L
Sbjct: 140 LSVVFQEGPRRVVVAVPVASPEAVERLKARAEVVAL 175
>2xbu_A Hypoxanthine-guanine phosphoribosyltransferase;
glycosyltransferase, purine salvage, FLIP pepti; HET:
5GP; 1.80A {Saccharomyces cerevisiae} PDB: 2jkz_A*
2jky_A*
Length = 221
Score = 34.0 bits (77), Expect = 0.020
Identities = 21/109 (19%), Positives = 32/109 (29%), Gaps = 19/109 (17%)
Query: 73 KIDVVYAIESRGFLFGPYIGQVLDIPFVPIRKKGKLPGVVERLEYGLEYGTVLDIPFVPI 132
K D++ AI GF+ + L P VP + L
Sbjct: 29 KPDLIIAIGGGGFIPARILRTFLKEPGVP---------TIRIFAIILSL----------Y 69
Query: 133 RKKGKLPGVVERLEYGLEYGTDCIEVQKDGGKAGKKALIVDDLIATGAS 181
+ VE + + Q GK LIVD++ T +
Sbjct: 70 EDLNSVGSEVEEVGVKVSRTQWIDYEQCKLDLVGKNVLIVDEVDDTRTT 118
>3mjd_A Orotate phosphoribosyltransferase; IDP02311, csgid, structural
genomics, center for structural genomics of infectious
diseases; 1.90A {Francisella tularensis}
Length = 232
Score = 31.7 bits (72), Expect = 0.14
Identities = 13/79 (16%), Positives = 26/79 (32%), Gaps = 20/79 (25%)
Query: 126 DIPFVPIRKKGKLPGVVERLEYGLEYGTD-CIEVQKDGGKAGKKALIVDDLIATGASC-- 182
D+P+ RK+ K ++G KK L++DD++ G +
Sbjct: 110 DMPYAFDRKEAK------------DHGEGGVFVG---ADMTNKKVLLIDDVMTAGTAFYE 154
Query: 183 --QLLTTLGVDVVECFAVM 199
L + + +
Sbjct: 155 SYNKLKIINAKIAGVVLSI 173
>2ps1_A Orotate phosphoribosyltransferase 1; alpha beta, oprtase-OA-PRPP
complex; HET: ORO PRP; 1.75A {Saccharomyces cerevisiae}
PDB: 2pry_A* 2prz_A*
Length = 226
Score = 31.4 bits (71), Expect = 0.17
Identities = 13/79 (16%), Positives = 27/79 (34%), Gaps = 18/79 (22%)
Query: 125 LDIPFVPIRKKGKLPGVVERLEYGLEYGTDCIEVQKDGGKAGKKALIVDDLIATGASC-- 182
+I + RK+ K G + K+ LI+DD++ G +
Sbjct: 98 QNIQYAFNRKEAKDHGEGGIIVGSA--------------LENKRILIIDDVMTAGTAINE 143
Query: 183 --QLLTTLGVDVVECFAVM 199
++++ VV +
Sbjct: 144 AFEIISNAKGQVVGSIIAL 162
>1nul_A XPRT, xanthine-guanine phosphoribosyltransferase; purine salvage
enzym; 1.80A {Escherichia coli} SCOP: c.61.1.1 PDB:
1a96_A* 1a95_A 1a98_A 1a97_A*
Length = 152
Score = 29.3 bits (66), Expect = 0.51
Identities = 8/26 (30%), Positives = 16/26 (61%)
Query: 156 IEVQKDGGKAGKKALIVDDLIATGAS 181
++V K G+ +++DDL+ TG +
Sbjct: 71 LKVLKRAEGDGEGFIVIDDLVDTGGT 96
>2i14_A Nicotinate-nucleotide pyrophosphorylase; ligand binding,
phosphoribosylpyrophosphate, Zn metal ION, structural
genomics, PSI; HET: PCP; 2.90A {Pyrococcus furiosus}
SCOP: c.1.17.1 d.41.2.1
Length = 395
Score = 30.0 bits (68), Expect = 0.56
Identities = 20/82 (24%), Positives = 29/82 (35%), Gaps = 10/82 (12%)
Query: 69 SLKDKIDVVYAIESRGFLFGPYIGQVLDIPFV---PIRKKGKLPGV--VERLEYGLEYGT 123
+ D +D + + + LDI V PI K+GKL G V R E G
Sbjct: 284 EIVDVVDA-FGVGGA-IASAKPVDFALDIVEVEGKPIAKRGKLSGRKQVYRCENG---HY 338
Query: 124 VLDIPFVPIRKKGKLPGVVERL 145
+ + + VE L
Sbjct: 339 HVVPANKKLERCPVCNAKVEPL 360
>1vdm_A Purine phosphoribosyltransferase; structural genomics, riken
structural genomics/proteomics initiative, RSGI; 2.50A
{Pyrococcus horikoshii} SCOP: c.61.1.1
Length = 153
Score = 29.1 bits (66), Expect = 0.68
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 161 DGGKAGKKALIVDDLIATGAS 181
G K+ +IVDD+ TG +
Sbjct: 78 HGDLKDKRVVIVDDVSDTGKT 98
>3n2l_A OPRT, oprtase, orotate phosphoribosyltransferase; pyrimidine
ribonucleotide biosynthesis, infectious diseases; 2.10A
{Vibrio cholerae}
Length = 238
Score = 28.3 bits (63), Expect = 1.6
Identities = 15/78 (19%), Positives = 27/78 (34%), Gaps = 19/78 (24%)
Query: 126 DIPFVPIRKKGKLPGVVERLEYGLEYGTDCIEVQKDGGKAGKKALIVDDLIATGAS---- 181
D P+ RK+ K +G G K + ++VDD+I G +
Sbjct: 117 DTPYCFNRKEAK------------NHGEGG---NLVGSKLEGRVMLVDDVITAGTAIRES 161
Query: 182 CQLLTTLGVDVVECFAVM 199
+L+ D+ +
Sbjct: 162 MELIQANKADLAGVLVAI 179
>3m8e_A Putative DNA-binding protein; winged helix-turn-helix, ARSR family;
2.00A {Bacillus thuringiensis} PDB: 3m9a_A 3m8f_A
Length = 124
Score = 27.0 bits (59), Expect = 2.7
Identities = 11/22 (50%), Positives = 17/22 (77%), Gaps = 2/22 (9%)
Query: 185 LTTLGVDVVECF--AVMELKDL 204
L+ LGV++VECF ME+++L
Sbjct: 103 LSDLGVEIVECFKQKAMEMRNL 124
>3s5j_B Ribose-phosphate pyrophosphokinase 1; nucleotide synthesis,
transferase; 2.02A {Homo sapiens} PDB: 2hcr_A* 3efh_A
2h06_A 2h07_A 2h08_A
Length = 326
Score = 27.9 bits (63), Expect = 2.9
Identities = 13/55 (23%), Positives = 23/55 (41%), Gaps = 13/55 (23%)
Query: 125 LDIPFVPIRKKGKLPGVVERLEYGLEYGTDCIEVQKDGGKAGKKALIVDDLIATG 179
L++ F I K+ K V+R+ + G + A++VDD+ T
Sbjct: 185 LNVDFALIHKERKKANEVDRM--------VLV-----GDVKDRVAILVDDMADTC 226
>3lrt_A Ribose-phosphate pyrophosphokinase; phosphoribosyl transferase, ATP
analog binding, ATP-binding, metal-binding, nucleotide
biosynthesis; HET: ADP; 1.53A {Thermoplasma volcanium}
PDB: 3lpn_A* 3nag_A* 3mbi_A*
Length = 286
Score = 27.1 bits (61), Expect = 3.9
Identities = 11/14 (78%), Positives = 13/14 (92%)
Query: 166 GKKALIVDDLIATG 179
GKK LIVDD+I+TG
Sbjct: 203 GKKLLIVDDIISTG 216
>1dku_A Protein (phosphoribosyl pyrophosphate synthetase); open alpha-beta
structure, domain duplication, phosphoribosyltransferase
type I fold; HET: AP2 ABM; 2.20A {Bacillus subtilis}
SCOP: c.61.1.2 c.61.1.2 PDB: 1dkr_A* 1ibs_A*
Length = 317
Score = 27.5 bits (62), Expect = 3.9
Identities = 7/15 (46%), Positives = 11/15 (73%)
Query: 165 AGKKALIVDDLIATG 179
GK A+++DD+I T
Sbjct: 216 EGKTAILIDDIIDTA 230
>3nuz_A Putative acetyl xylan esterase; structural genomics, joint center
for structural genomics, J protein structure initiative,
PSI-biology; 2.30A {Bacteroides fragilis}
Length = 398
Score = 27.0 bits (59), Expect = 5.2
Identities = 7/49 (14%), Positives = 16/49 (32%), Gaps = 6/49 (12%)
Query: 98 PFVPIRKKGKLPGV-VERLEYGLEYGTVLDIP---FVPIRKKGKLPGVV 142
P K+ + G +E+ E+ +P +P ++
Sbjct: 77 PAPVCIKREQREGYRLEKWEFYPLPKC--VSTFLVLIPDNINKPVPAIL 123
>3ray_A PR domain-containing protein 11; structural genomics consortium,
SGC, histone methylation, Zn transcriptional regulation,
chromatin, transcription; 1.73A {Homo sapiens}
Length = 237
Score = 26.7 bits (58), Expect = 6.3
Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 2/30 (6%)
Query: 69 SLKDKIDVVYAIES--RGFLFGPYIGQVLD 96
+ DV E +G +FGPY GQ+
Sbjct: 79 DTSGESDVRCVNEVIPKGHIFGPYEGQIST 108
>1lh0_A OMP synthase; loop closure, monomer closure, orotate
phosphoribosyltransferase; HET: ORO PRP; 2.00A
{Salmonella typhimurium} SCOP: c.61.1.1 PDB: 1opr_A*
1sto_A* 1oro_A
Length = 213
Score = 26.3 bits (58), Expect = 6.4
Identities = 13/78 (16%), Positives = 28/78 (35%), Gaps = 19/78 (24%)
Query: 126 DIPFVPIRKKGKLPGVVERLEYGLEYGTDCIEVQKDGGKAGKKALIVDDLIATGAS---- 181
D+P+ RK+ K ++G G + ++VDD+I G +
Sbjct: 92 DLPYCFNRKEAK------------DHGEGG---SLVGSALQGRVMLVDDVITAGTAIRES 136
Query: 182 CQLLTTLGVDVVECFAVM 199
+++ G + +
Sbjct: 137 MEIIQAHGATLAGVLISL 154
>2ji4_A Phosphoribosyl pyrophosphate synthetase-associated protein 2;
phosphorylation, nucleotide biosynthesis, transferase;
2.55A {Homo sapiens} PDB: 2c4k_A*
Length = 379
Score = 26.6 bits (59), Expect = 6.5
Identities = 8/16 (50%), Positives = 11/16 (68%)
Query: 166 GKKALIVDDLIATGAS 181
G+ A+IVDD+I S
Sbjct: 272 GRIAIIVDDIIDDVDS 287
>4a17_A RPL8; eukaryotic ribosome, ribosome, eukaryotic initiation factor
60S, translation, large ribosomal subunit; 3.52A
{Tetrahymena thermophila} PDB: 4a1a_A 4a1c_A 4a1e_A
Length = 264
Score = 26.4 bits (59), Expect = 6.7
Identities = 2/15 (13%), Positives = 8/15 (53%)
Query: 103 RKKGKLPGVVERLEY 117
++G + G + + +
Sbjct: 37 ERQGYIRGCIRDIVH 51
Score = 26.4 bits (59), Expect = 6.7
Identities = 2/15 (13%), Positives = 8/15 (53%)
Query: 133 RKKGKLPGVVERLEY 147
++G + G + + +
Sbjct: 37 ERQGYIRGCIRDIVH 51
>3jyw_B 60S ribosomal protein L2; eukaryotic ribosome, RACK1 protein,
flexible fitting; 8.90A {Thermomyces lanuginosus} PDB:
3izc_B 3izs_B 3o58_B 3o5h_B 3u5e_A 3u5i_A 1s1i_B
Length = 243
Score = 26.4 bits (59), Expect = 7.2
Identities = 3/15 (20%), Positives = 10/15 (66%)
Query: 103 RKKGKLPGVVERLEY 117
+ G + G+V+++ +
Sbjct: 35 ERHGYIRGIVKQIVH 49
Score = 26.4 bits (59), Expect = 7.2
Identities = 3/15 (20%), Positives = 10/15 (66%)
Query: 133 RKKGKLPGVVERLEY 147
+ G + G+V+++ +
Sbjct: 35 ERHGYIRGIVKQIVH 49
>1u9y_A RPPK;, ribose-phosphate pyrophosphokinase; PRPP synthase,
transferase; 2.65A {Methanocaldococcus jannaschii} SCOP:
c.61.1.2 c.61.1.2 PDB: 1u9z_A*
Length = 284
Score = 26.3 bits (59), Expect = 7.2
Identities = 7/15 (46%), Positives = 10/15 (66%)
Query: 165 AGKKALIVDDLIATG 179
+ IVDD+I+TG
Sbjct: 204 KDRDVFIVDDIISTG 218
>3dah_A Ribose-phosphate pyrophosphokinase; pyrophosphoki seattle
structural genomics center for infectious disease,
magnesium, metal binding; HET: AMP; 2.30A {Burkholderia
pseudomallei}
Length = 319
Score = 26.4 bits (59), Expect = 7.9
Identities = 5/14 (35%), Positives = 10/14 (71%)
Query: 166 GKKALIVDDLIATG 179
G+ +I+DD++ T
Sbjct: 216 GRTCVIMDDMVDTA 229
>3ihx_A PR domain zinc finger protein 10; PRDM10, methyltransferase,
structural genomics, structural G consortium, SGC,
DNA-binding, metal-binding, nucleus; 2.50A {Homo
sapiens}
Length = 152
Score = 25.8 bits (56), Expect = 8.8
Identities = 6/31 (19%), Positives = 13/31 (41%), Gaps = 2/31 (6%)
Query: 68 LSLKDKIDVVYAIES--RGFLFGPYIGQVLD 96
L + + V++ + FGP G ++
Sbjct: 25 LYIDRFLGGVFSKRRIPKRTQFGPVEGPLVR 55
>1v02_A Dhurrinase, dhurrinase-1; beta-glucosidase, dhurrin hydrolysis,
PEST defense, family GH1, hydrolase; 1.9A {Sorghum
bicolor} SCOP: c.1.8.4 PDB: 1v02_E 1v03_A*
Length = 565
Score = 26.4 bits (59), Expect = 9.8
Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Query: 1 MEHLRSSPRTPNCRSNNLTQQPE-PIITRNGPATYSTPGFLSPPRDIF 47
HL SSP+ + R +NL+ +P I+ + + P RD F
Sbjct: 29 RHHLCSSPQNISKRRSNLSFRPRAQTISSESAGIHRLSPWEIPRRDWF 76
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.141 0.419
Gapped
Lambda K H
0.267 0.0774 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,461,899
Number of extensions: 218803
Number of successful extensions: 567
Number of sequences better than 10.0: 1
Number of HSP's gapped: 542
Number of HSP's successfully gapped: 54
Length of query: 220
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 130
Effective length of database: 4,188,903
Effective search space: 544557390
Effective search space used: 544557390
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (24.9 bits)