RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy6201
(220 letters)
>d1zn7a1 c.61.1.1 (A:3-180) Adenine PRTase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 178
Score = 80.1 bits (197), Expect = 1e-19
Identities = 64/183 (34%), Positives = 94/183 (51%), Gaps = 36/183 (19%)
Query: 44 RDIFSVYRDQAASTALHCLLKCYALSLKD-KIDVVYAIESRGFLFGPYIGQVLDIPFVPI 102
RDI V +D A+ A LL + + +ID + ++SRGFLFGP + Q L + V I
Sbjct: 25 RDISPVLKDPASFRAAIGLLARHLKATHGGRIDYIAGLDSRGFLFGPSLAQELGLGCVLI 84
Query: 103 RKKGKLPGVVERLEYGLEYGTVLDIPFVPIRKKGKLPGVVERLEYGLEYGTDCIEVQKDG 162
RK+GKLPG Y LEYG +E+QKD
Sbjct: 85 RKRGKLPGPTLWASYSLEYGK------------------------------AELEIQKDA 114
Query: 163 GKAGKKALIVDDLIATG----ASCQLLTTLGVDVVECFAVMELKDLNGRQKVPS-KVVSL 217
+ G++ ++VDDL+ATG A+C+LL L +V+EC +++EL L GR+K+ SL
Sbjct: 115 LEPGQRVVVVDDLLATGGTMNAACELLGRLQAEVLECVSLVELTSLKGREKLAPVPFFSL 174
Query: 218 LEF 220
L++
Sbjct: 175 LQY 177
>d1y0ba1 c.61.1.1 (A:1-191) Xanthine phosphoribosyltransferase
{Bacillus subtilis [TaxId: 1423]}
Length = 191
Score = 75.0 bits (184), Expect = 2e-17
Identities = 30/171 (17%), Positives = 46/171 (26%), Gaps = 34/171 (19%)
Query: 58 ALHCLLKCYALSLKD-KIDVVYAIESRGFLFGPYIGQVLDIPFVPIRKKGKLPGVVERLE 116
+ + +A I + IES G G L +P V RK L L
Sbjct: 34 LMQRIGDEFASRFAKDGITKIVTIESSGIAPAVMTGLKLGVPVVFARKHKSLTLTDNLLT 93
Query: 117 YGLEYGTVLDIPFVPIRKKGKLPGVVERLEYGLEYGTDCIEVQKDGGKAGKKALIVDDLI 176
+ + I V LI+DD +
Sbjct: 94 A--------------------------SVYSFTKQTESQIAVSGTHLSDQDHVLIIDDFL 127
Query: 177 ATG----ASCQLLTTLGVDVVECFAVMELKDLNGRQKVPS---KVVSLLEF 220
A G ++ G + V+E GR ++ +V SL
Sbjct: 128 ANGQAAHGLVSIVKQAGASIAGIGIVIEKSFQPGRDELVKLGYRVESLARI 178
>d1g2qa_ c.61.1.1 (A:) Adenine PRTase {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 178
Score = 74.4 bits (182), Expect = 2e-17
Identities = 60/181 (33%), Positives = 84/181 (46%), Gaps = 36/181 (19%)
Query: 44 RDIFSVYRDQAASTAL--HCLLKCYALSLKDKIDVVYAIESRGFLFGPYIGQVLDIPFVP 101
D ++R+ L L + KID + +ESRGFLFGP + L + FVP
Sbjct: 28 EDFLPIFRNPGLFQKLIDAFKLHLEEAFPEVKIDYIVGLESRGFLFGPTLALALGVGFVP 87
Query: 102 IRKKGKLPGVVERLEYGLEYGTVLDIPFVPIRKKGKLPGVVERLEYGLEYGTDCIEVQKD 161
+RK GKLPG + Y EYG+ D E+QK+
Sbjct: 88 VRKAGKLPGECFKATYEKEYGS------------------------------DLFEIQKN 117
Query: 162 GGKAGKKALIVDDLIATG----ASCQLLTTLGVDVVECFAVMELKDLNGRQKVPSKVVSL 217
AG +IVDD+IATG A+ +L+ L +++E VMEL L GR K+ + V +L
Sbjct: 118 AIPAGSNVIIVDDIIATGGSAAAAGELVEQLEANLLEYNFVMELDFLKGRSKLNAPVFTL 177
Query: 218 L 218
L
Sbjct: 178 L 178
>d1qb7a_ c.61.1.1 (A:) Adenine PRTase {Leishmania donovani [TaxId:
5661]}
Length = 236
Score = 74.0 bits (181), Expect = 1e-16
Identities = 43/191 (22%), Positives = 74/191 (38%), Gaps = 41/191 (21%)
Query: 44 RDIFSVYRDQAASTALHCLLKCYALSLKDKIDVVYAIESRGFLFGPYIGQVLDIPFVPIR 103
D+ S+ A+ L ++ + ++RGFLFGP I L+IPFV +R
Sbjct: 42 ADVSSITESPETLKAIRDFLVQRYRAMSPAPTHILGFDARGFLFGPMIAVELEIPFVLMR 101
Query: 104 KKGKLPGVVERLE-YGLEYGTVLDIPFVPIRKKGKLPGVVERLEYGLEYGTDCIEVQKDG 162
K K G++ R E Y EY + + ++
Sbjct: 102 KADKNAGLLIRSEPYEKEYKE---------------------------AAPEVMTIRYGS 134
Query: 163 GKAGKKALIVDDLIATG----ASCQLLTTLGVDVVECFAVMELKDLNGRQKVPSK----- 213
G + +++DD++ATG + QL+ VVE +++ + L +K+ S
Sbjct: 135 IGKGSRVVLIDDVLATGGTALSGLQLVEASDAVVVEMVSILSIPFLKAAEKIHSTANSRY 194
Query: 214 ----VVSLLEF 220
+SLL
Sbjct: 195 KDIKFISLLSD 205
>d1o57a2 c.61.1.1 (A:75-276) Pur operon repressor (PurR), C-terminal
domain {Bacillus subtilis [TaxId: 1423]}
Length = 202
Score = 64.3 bits (156), Expect = 2e-13
Identities = 32/195 (16%), Positives = 61/195 (31%), Gaps = 38/195 (19%)
Query: 34 YSTPGFLSPP--RDIFSVYRDQAASTALHCLLKCYALSLKD-KIDVVYAIESRGFLFGPY 90
+ P + P + + + L + K +A + +IDVV + ++G
Sbjct: 17 LANPERILPGGYVYLTDILGKPSV---LSKVGKLFASVFAEREIDVVMTVATKGIPLAYA 73
Query: 91 IGQVLDIPFVPIRKKGKLPGVVERLEYGLEYGTVLDIPFVPIRKKGKLPGVVERLEYGLE 150
L++P V +RK K+ V G
Sbjct: 74 AASYLNVPVVIVRKDNKVTEG---------------------------STVSINYVSGSS 106
Query: 151 YGTDCIEVQKDGGKAGKKALIVDDLIATG----ASCQLLTTLGVDVVECFAVMELKDLNG 206
+ + K K G LI+DD + G LL +V ++E + ++
Sbjct: 107 NRIQTMSLAKRSMKTGSNVLIIDDFMKAGGTINGMINLLDEFNANVAGIGVLVEAEGVDE 166
Query: 207 RQKVP-SKVVSLLEF 220
R +++L
Sbjct: 167 RLVDEYMSLLTLSTI 181
>d1vcha1 c.61.1.1 (A:2-175) Putative phosphoribosyltransferase
TTHA1613 {Thermus thermophilus [TaxId: 274]}
Length = 174
Score = 62.8 bits (152), Expect = 4e-13
Identities = 25/181 (13%), Positives = 59/181 (32%), Gaps = 38/181 (20%)
Query: 44 RDIFSVYRDQAASTALHCLLKCYALSLKDKIDVVYAIESRGFLFGPYIGQVLDIPFVPIR 103
+ D + A L+ + + ++++ E+ + + L +P+V R
Sbjct: 25 IPLVEFLGDPEFTRAAAEALRPL---VPKEAEILFTTETSPIPLTHVLAEALGLPYVVAR 81
Query: 104 KKGKLPGVVERLEYGLEYGTVLDIPFVPIRKKGKLPGVVERLEYGLEYGTD-CIEVQKDG 162
++ + + P + E L G ++ +
Sbjct: 82 RRRRPY--------------------------MEDPIIQEVQTLTLGVGEVLWLDRRFAE 115
Query: 163 GKAGKKALIVDDLIATG----ASCQLLTTLGVDVVECFAVMELKDLNGRQKVPSKVVSLL 218
++ ++V D++A+G A +++ G VV AV G + V+ L
Sbjct: 116 KLLNQRVVLVSDVVASGETMRAMEKMVLRAGGHVVARLAVFR----QGTPGLAVDTVAEL 171
Query: 219 E 219
Sbjct: 172 P 172
>d1l1qa_ c.61.1.1 (A:) Adenine PRTase {Giardia lamblia [TaxId:
5741]}
Length = 181
Score = 61.6 bits (149), Expect = 1e-12
Identities = 50/186 (26%), Positives = 76/186 (40%), Gaps = 40/186 (21%)
Query: 44 RDIFSVYRDQAASTALHCLLKCYALSLKDKIDVVYAIESRGFLFGPYIGQVLDIPFVPIR 103
+D+ + AA A+ + A I V IESRGF+ G + L + FV +R
Sbjct: 25 KDLSDILSTPAALDAVRKEV--TAHYKDVPITKVVGIESRGFILGGIVANSLGVGFVALR 82
Query: 104 KKGKLPGVVERLEYGLEYGTVLDIPFVPIRKKGKLPGVVERLEYGLEYGTDCIEVQKDGG 163
K GKLPG V + + +EY IEVQK
Sbjct: 83 KAGKLPGDVCKCTFDMEYQK-----------------------------GVTIEVQKRQL 113
Query: 164 KAGKKALIVDDLIATG----ASCQLLTTLG--VDVVECFAVMELKDLNGRQKVPSK---V 214
L+ DD++ATG A+ +L T G + + + E++ L GR+KV K +
Sbjct: 114 GPHDVVLLHDDVLATGGTLLAAIELCETAGVKPENIYINVLYEIEALKGREKVGQKCTRL 173
Query: 215 VSLLEF 220
S++
Sbjct: 174 FSVIRE 179
>d1nula_ c.61.1.1 (A:) Xanthine-guanine PRTase (XPRTase)
{Escherichia coli [TaxId: 562]}
Length = 150
Score = 28.9 bits (64), Expect = 0.25
Identities = 8/44 (18%), Positives = 18/44 (40%)
Query: 142 VERLEYGLEYGTDCIEVQKDGGKAGKKALIVDDLIATGASCQLL 185
+ ++V K G+ +++DDL+ TG + +
Sbjct: 55 TVCISSYDHDNQRELKVLKRAEGDGEGFIVIDDLVDTGGTAVAI 98
>d1dkua2 c.61.1.2 (A:167-315) Phosphoribosylpyrophosphate synthetase
{Bacillus subtilis [TaxId: 1423]}
Length = 149
Score = 28.8 bits (64), Expect = 0.28
Identities = 18/78 (23%), Positives = 25/78 (32%), Gaps = 17/78 (21%)
Query: 125 LDIPFVPIRKKGKLPGVVERLEYGLEYGTDCIEVQKDGGKAGKKALIVDDLIATG----A 180
L P I K+ P V E + G GK A+++DD+I T
Sbjct: 22 LKAPIAIIDKRRPRPNVAEVMN-------------IVGNIEGKTAILIDDIIDTAGTITL 68
Query: 181 SCQLLTTLGVDVVECFAV 198
+ L G V
Sbjct: 69 AANALVENGAKEVYACCT 86
>d1wd5a_ c.61.1.1 (A:) Putative phosphoribosyltransferase TT1426
(TTHA1462) {Thermus thermophilus [TaxId: 274]}
Length = 208
Score = 28.9 bits (64), Expect = 0.34
Identities = 24/138 (17%), Positives = 47/138 (34%), Gaps = 9/138 (6%)
Query: 70 LKDKIDVVYAIESRGFLFGPYIGQVLDIPFVPIRKKG-KLPGVVERLEYGLEYGTVLDIP 128
L + VV + G + + + L + + PG E + G L +
Sbjct: 20 LGLEAPVVLGLPRGGVVVADEVARRLGGELDVVLVRKVGAPGNPEFALGAVGEGGELVLM 79
Query: 129 FVPIRKKGK---LPGVVERLEYGLEYGTDCIEVQKDGGKAGKKALIVDDLIATG----AS 181
+R + + + + V+ + G+ ++VDD +ATG A+
Sbjct: 80 PYALRYADQSYLEREAARQRDVLRKRAERYRRVRPKAARKGRDVVLVDDGVATGASMEAA 139
Query: 182 CQLLTTLGV-DVVECFAV 198
++ G VV V
Sbjct: 140 LSVVFQEGPRRVVVAVPV 157
>d2guya2 c.1.8.1 (A:1-381) Fungal alpha-amylases {Aspergillus
oryzae, Taka-amylase [TaxId: 5062]}
Length = 381
Score = 28.8 bits (63), Expect = 0.47
Identities = 6/43 (13%), Positives = 14/43 (32%)
Query: 75 DVVYAIESRGFLFGPYIGQVLDIPFVPIRKKGKLPGVVERLEY 117
+Y + + F G G++++L+Y
Sbjct: 9 QSIYFLLTDRFARTDGSTTATCNTADQKYCGGTWQGIIDKLDY 51
>d1bf2a3 c.1.8.1 (A:163-637) Isoamylase, central domain {Pseudomonas
amyloderamosa [TaxId: 32043]}
Length = 475
Score = 28.1 bits (61), Expect = 0.90
Identities = 6/30 (20%), Positives = 11/30 (36%)
Query: 128 PFVPIRKKGKLPGVVERLEYGLEYGTDCIE 157
+P + +G G + Y G +E
Sbjct: 32 TSIPAQYRGTYYGAGLKASYLASLGVTAVE 61
>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor
{Human (Homo sapiens) [TaxId: 9606]}
Length = 242
Score = 27.2 bits (58), Expect = 1.7
Identities = 5/19 (26%), Positives = 10/19 (52%)
Query: 7 SPRTPNCRSNNLTQQPEPI 25
S R C+ + +T+ P +
Sbjct: 9 SNRVFLCQESKVTEIPSDL 27
>d2aaaa2 c.1.8.1 (A:1-381) Fungal alpha-amylases {Aspergillus niger,
acid amylase [TaxId: 5061]}
Length = 381
Score = 26.9 bits (58), Expect = 2.2
Identities = 7/43 (16%), Positives = 14/43 (32%)
Query: 75 DVVYAIESRGFLFGPYIGQVLDIPFVPIRKKGKLPGVVERLEY 117
+Y + + F I G G+++ L+Y
Sbjct: 9 QSIYFLLTDRFGRTDNSTTATCNTGNEIYCGGSWQGIIDHLDY 51
>d1jo0a_ d.68.4.1 (A:) YhbY homologue HI1333 {Haemophilus influenzae
[TaxId: 727]}
Length = 97
Score = 25.0 bits (55), Expect = 3.4
Identities = 12/68 (17%), Positives = 22/68 (32%), Gaps = 5/68 (7%)
Query: 98 PFVPIRKKGKLPGVVERLEYGLEYGTVLDIPFVPIRKKGKLPGVVERLEYGLEYGTDCIE 157
P V + G GV+ +E L + ++ G + + + T +
Sbjct: 20 PVVMLGGNGLTEGVLAEIENALN-----HHELIKVKVAGADRETKQLIINAIVRETKAAQ 74
Query: 158 VQKDGGKA 165
VQ G
Sbjct: 75 VQTIGHIL 82
>d1dcfa_ c.23.1.2 (A:) Receiver domain of the ethylene receptor
{Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 134
Score = 25.3 bits (55), Expect = 4.1
Identities = 9/33 (27%), Positives = 14/33 (42%), Gaps = 3/33 (9%)
Query: 165 AGKKALIVDD--LIATGASCQLLTTLGVDVVEC 195
G K L++D+ + LL LG +V
Sbjct: 6 TGLKVLVMDENGVSRMVTK-GLLVHLGCEVTTV 37
>d2ih2a2 d.287.1.1 (A:244-413) DNA methylase TaqI, C-terminal
domain {Thermus aquaticus [TaxId: 271]}
Length = 170
Score = 25.6 bits (56), Expect = 4.6
Identities = 12/55 (21%), Positives = 21/55 (38%), Gaps = 11/55 (20%)
Query: 3 HLRSSPRTPNCRSNNLTQQPE-----PIIT-RN---GPATYSTP--GFLSPPRDI 46
H+R + R+P + + ++ P++T RN G Y G P
Sbjct: 22 HIRFAARSPEFKKHPAVRKEPGPGLVPVLTGRNLKPGWVDYEKNHSGLWMPKERA 76
>d1rq8a_ d.68.4.1 (A:) Hypothetical protein SAV1595 {Staphylococcus
aureus, (strain Mu50 / ATCC 700699) [TaxId: 1280]}
Length = 96
Score = 24.6 bits (54), Expect = 4.9
Identities = 12/68 (17%), Positives = 22/68 (32%), Gaps = 5/68 (7%)
Query: 98 PFVPIRKKGKLPGVVERLEYGLEYGTVLDIPFVPIRKKGKLPGVVERLEYGLEYGTDCIE 157
P I K G ++++++ LE + + + + L L T
Sbjct: 19 PIFQIGKGGINENMIKQIDDTLE-----NRELIKVHVLQNNFDDKKELAETLSEATRSEL 73
Query: 158 VQKDGGKA 165
VQ G
Sbjct: 74 VQVIGSMI 81
>d1qd1a1 d.58.34.1 (A:2-180) Formiminotransferase domain of
formiminotransferase-cyclodeaminase. {Pig (Sus scrofa)
[TaxId: 9823]}
Length = 179
Score = 24.8 bits (54), Expect = 7.5
Identities = 10/41 (24%), Positives = 16/41 (39%)
Query: 89 PYIGQVLDIPFVPIRKKGKLPGVVERLEYGLEYGTVLDIPF 129
P +G + PF+P+R V +G L +P
Sbjct: 82 PRMGALDVCPFIPVRGVTMDECVRCAQAFGQRLAEELGVPV 122
>d1dfup_ b.53.1.1 (P:) Ribosomal protein L25 {Escherichia coli
[TaxId: 562]}
Length = 94
Score = 23.8 bits (51), Expect = 8.9
Identities = 8/30 (26%), Positives = 13/30 (43%), Gaps = 4/30 (13%)
Query: 132 IRKKGKLPGVVERLEYGLEYGTDCIEVQKD 161
+R K P ++ YG + IE+ D
Sbjct: 20 LRAANKFPAII----YGGKEAPLAIELDHD 45
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.141 0.419
Gapped
Lambda K H
0.267 0.0629 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 835,096
Number of extensions: 40744
Number of successful extensions: 115
Number of sequences better than 10.0: 1
Number of HSP's gapped: 103
Number of HSP's successfully gapped: 21
Length of query: 220
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 138
Effective length of database: 1,281,736
Effective search space: 176879568
Effective search space used: 176879568
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.6 bits)