BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6205
(224 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3HMU|A Chain A, Crystal Structure Of A Class Iii Aminotransferase From
Silicibacter Pomeroyi
pdb|3HMU|B Chain B, Crystal Structure Of A Class Iii Aminotransferase From
Silicibacter Pomeroyi
Length = 472
Score = 77.4 bits (189), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 57/179 (31%), Positives = 89/179 (49%), Gaps = 25/179 (13%)
Query: 53 PDVYRGKYP------ADKYPDEDLGVKYAQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQ 106
PDV+ P D P+E G+ A+++++ I +G N R AF AE +Q GG
Sbjct: 182 PDVHHINQPNWWAEGGDMDPEE-FGLARARELEEAILELGEN--RVAAFIAEPVQGAGGV 238
Query: 107 IIPPANYLREVYK------------HVQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMG 154
I+ P +Y E+ + V GFGR G +W+ Q G I P I+T+ K +
Sbjct: 239 IVAPDSYWPEIQRICDKYDILLIADEVICGFGRTG-NWFGTQTMG--IRPHIMTIAKGLS 295
Query: 155 NGH-PVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLETENLREHALDV 212
+G+ P+ I E+A + + TY G+PV+ AVA + +LE EN+ +H +V
Sbjct: 296 SGYAPIGGSIVCDEVAHVIGKDEFNHGYTYSGHPVAAAVALENLRILEEENILDHVRNV 354
>pdb|3RUY|A Chain A, Crystal Structure Of The Ornithine-Oxo Acid Transaminase
Rocd From Bacillus Anthracis
pdb|3RUY|B Chain B, Crystal Structure Of The Ornithine-Oxo Acid Transaminase
Rocd From Bacillus Anthracis
Length = 392
Score = 77.0 bits (188), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 48/142 (33%), Positives = 72/142 (50%), Gaps = 18/142 (12%)
Query: 94 AFFAESLQSCGGQIIPPANYLRE------------VYKHVQVGFGRVGTHWWAFQLQGDD 141
AF E +Q G IPPA +L+E V +Q G GR G F D+
Sbjct: 185 AFILEPIQGEAGINIPPAGFLKEALEVCKKENVLFVADEIQTGLGRTGK---VFACDWDN 241
Query: 142 IIPDIVTVGKPMGNG-HPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVL 200
+ PD+ +G +G G P++ ++I F+ + +T+GGNP++CAV+ A +EVL
Sbjct: 242 VTPDMYILGXALGGGVFPISCAAANRDILGVFEPGS--HGSTFGGNPLACAVSIAALEVL 299
Query: 201 ETENLREHALDVGNQLHTPKKE 222
E E L E +L +G +L KE
Sbjct: 300 EEEKLTERSLQLGEKLVGQLKE 321
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 11/17 (64%), Positives = 15/17 (88%)
Query: 5 PLIGDVRGIGLFVGVEL 21
P+I +VRG GLF+G+EL
Sbjct: 325 PMITEVRGKGLFIGIEL 341
>pdb|1D7R|A Chain A, Crystal Structure Of The Complex Of 2,2-Dialkylglycine
Decarboxylase With 5pa
pdb|1D7S|A Chain A, Crystal Structure Of The Complex Of 2,2-Dialkylglycine
Decarboxylase With Dcs
pdb|1D7U|A Chain A, Crystal Structure Of The Complex Of 2,2-Dialkylglycine
Decarboxylase With Lcs
pdb|1D7V|A Chain A, Crystal Structure Of The Complex Of 2,2-Dialkylglycine
Decarboxylase With Nma
Length = 433
Score = 76.3 bits (186), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 54/188 (28%), Positives = 86/188 (45%), Gaps = 20/188 (10%)
Query: 42 PPVRMSTEAPCPDVYRGKYPADKYPDEDLGVKYAQDVQDLIEAMGRNGKRPCAFFAESLQ 101
P S P P YR ++ + D + YA D+ D ++ AF AE +
Sbjct: 159 PAAVGSFAIPAPFTYRPRFERNGAYDYLAELDYAFDLIDR-----QSSGNLAAFIAEPIL 213
Query: 102 SCGGQIIPPANYLRE------------VYKHVQVGFGRVGTHWWAFQLQGDDIIPDIVTV 149
S GG I P Y+ + Q G GR GT F Q D + PDI+T+
Sbjct: 214 SSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGTM---FACQRDGVTPDILTL 270
Query: 150 GKPMGNGHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLETENLREHA 209
K +G G P+AA++T+ I + E G ++ T+ +P+ AV V++V++ + L A
Sbjct: 271 SKTLGAGLPLAAIVTSAAIEERAHELGYLFYTTHVSDPLPAAVGLRVLDVVQRDGLVARA 330
Query: 210 LDVGNQLH 217
+G++L
Sbjct: 331 NVMGDRLR 338
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 22/31 (70%)
Query: 1 MARYPLIGDVRGIGLFVGVELVTCRKQKTPA 31
M R+ IGDVRG GL +GVE+V R+ K PA
Sbjct: 345 MERFDCIGDVRGRGLLLGVEIVKDRRTKEPA 375
>pdb|1M0N|A Chain A, Structure Of Dialkylglycine Decarboxylase Complexed With
1- Aminocyclopentanephosphonate
pdb|1M0O|A Chain A, Structure Of Dialkylglycine Decarboxylase Complexed With
1- Amino-1-Methylpropanephosphonate
pdb|1M0P|A Chain A, Structure Of Dialkylglycine Decarboxylase Complexed With
1- Amino-1-Phenylethanephosphonate
pdb|1M0Q|A Chain A, Structure Of Dialkylglycine Decarboxylase Complexed With
S- 1-Aminoethanephosphonate
pdb|1ZC9|A Chain A, The Crystal Structure Of Dialkylglycine Decarboxylase
Complex With Pyridoxamine 5-phosphate
pdb|1ZOB|A Chain A, Crystal Structure Of Dialkylglycine Decarboxylases Bound
With Calcium Ion
pdb|1ZOD|A Chain A, Crystal Structure Of Dialkylglycine Decarboxylase Bound
With Cesium Ion
pdb|1DKA|A Chain A, Dialkylglycine Decarboxylase Structure: Bifunctional
Active Site And Alkali Metal Binding Sites
pdb|2DKB|A Chain A, Dialkylglycine Decarboxylase Structure: Bifunctional
Active Site And Alkali Metal Binding Sites
Length = 433
Score = 76.3 bits (186), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 54/188 (28%), Positives = 86/188 (45%), Gaps = 20/188 (10%)
Query: 42 PPVRMSTEAPCPDVYRGKYPADKYPDEDLGVKYAQDVQDLIEAMGRNGKRPCAFFAESLQ 101
P S P P YR ++ + D + YA D+ D ++ AF AE +
Sbjct: 159 PAAVGSFAIPAPFTYRPRFERNGAYDYLAELDYAFDLIDR-----QSSGNLAAFIAEPIL 213
Query: 102 SCGGQIIPPANYLRE------------VYKHVQVGFGRVGTHWWAFQLQGDDIIPDIVTV 149
S GG I P Y+ + Q G GR GT F Q D + PDI+T+
Sbjct: 214 SSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGTM---FACQRDGVTPDILTL 270
Query: 150 GKPMGNGHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLETENLREHA 209
K +G G P+AA++T+ I + E G ++ T+ +P+ AV V++V++ + L A
Sbjct: 271 SKTLGAGLPLAAIVTSAAIEERAHELGYLFYTTHVSDPLPAAVGLRVLDVVQRDGLVARA 330
Query: 210 LDVGNQLH 217
+G++L
Sbjct: 331 NVMGDRLR 338
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 22/31 (70%)
Query: 1 MARYPLIGDVRGIGLFVGVELVTCRKQKTPA 31
M R+ IGDVRG GL +GVE+V R+ K PA
Sbjct: 345 MERFDCIGDVRGRGLLLGVEIVKDRRTKEPA 375
>pdb|1Z3Z|A Chain A, The Crystal Structure Of A Dgd Mutant: Q52a
Length = 431
Score = 76.3 bits (186), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 54/188 (28%), Positives = 86/188 (45%), Gaps = 20/188 (10%)
Query: 42 PPVRMSTEAPCPDVYRGKYPADKYPDEDLGVKYAQDVQDLIEAMGRNGKRPCAFFAESLQ 101
P S P P YR ++ + D + YA D+ D ++ AF AE +
Sbjct: 157 PAAVGSFAIPAPFTYRPRFERNGAYDYLAELDYAFDLIDR-----QSSGNLAAFIAEPIL 211
Query: 102 SCGGQIIPPANYLRE------------VYKHVQVGFGRVGTHWWAFQLQGDDIIPDIVTV 149
S GG I P Y+ + Q G GR GT F Q D + PDI+T+
Sbjct: 212 SSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGTM---FACQRDGVTPDILTL 268
Query: 150 GKPMGNGHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLETENLREHA 209
K +G G P+AA++T+ I + E G ++ T+ +P+ AV V++V++ + L A
Sbjct: 269 SKTLGAGLPLAAIVTSAAIEERAHELGYLFYTTHVSDPLPAAVGLRVLDVVQRDGLVARA 328
Query: 210 LDVGNQLH 217
+G++L
Sbjct: 329 NVMGDRLR 336
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 22/31 (70%)
Query: 1 MARYPLIGDVRGIGLFVGVELVTCRKQKTPA 31
M R+ IGDVRG GL +GVE+V R+ K PA
Sbjct: 343 MERFDCIGDVRGRGLLLGVEIVKDRRTKEPA 373
>pdb|1DGD|A Chain A, An Alkali Metal Ion Size-Dependent Switch In The Active
Site Structure Of Dialkylglycine Decarboxylase
pdb|1DGE|A Chain A, An Alkali Metal Ion Size-Dependent Switch In The Active
Site Structure Of Dialkylglycine Decarboxylase
Length = 432
Score = 75.9 bits (185), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 54/188 (28%), Positives = 86/188 (45%), Gaps = 20/188 (10%)
Query: 42 PPVRMSTEAPCPDVYRGKYPADKYPDEDLGVKYAQDVQDLIEAMGRNGKRPCAFFAESLQ 101
P S P P YR ++ + D + YA D+ D ++ AF AE +
Sbjct: 158 PAAVGSFAIPAPFTYRPRFERNGAYDYLAELDYAFDLIDR-----QSSGNLAAFIAEPIL 212
Query: 102 SCGGQIIPPANYLRE------------VYKHVQVGFGRVGTHWWAFQLQGDDIIPDIVTV 149
S GG I P Y+ + Q G GR GT F Q D + PDI+T+
Sbjct: 213 SSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGTM---FACQRDGVTPDILTL 269
Query: 150 GKPMGNGHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLETENLREHA 209
K +G G P+AA++T+ I + E G ++ T+ +P+ AV V++V++ + L A
Sbjct: 270 SKTLGAGLPLAAIVTSAAIEERAHELGYLFYTTHVSDPLPAAVGLRVLDVVQRDGLVARA 329
Query: 210 LDVGNQLH 217
+G++L
Sbjct: 330 NVMGDRLR 337
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 22/31 (70%)
Query: 1 MARYPLIGDVRGIGLFVGVELVTCRKQKTPA 31
M R+ IGDVRG GL +GVE+V R+ K PA
Sbjct: 344 MERFDCIGDVRGRGLLLGVEIVKDRRTKEPA 374
>pdb|2BYL|A Chain A, Structure Of Ornithine Aminotransferase Triple Mutant Y85i
Y55a G320f
pdb|2BYL|B Chain B, Structure Of Ornithine Aminotransferase Triple Mutant Y85i
Y55a G320f
pdb|2BYL|C Chain C, Structure Of Ornithine Aminotransferase Triple Mutant Y85i
Y55a G320f
Length = 439
Score = 75.9 bits (185), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 50/134 (37%), Positives = 72/134 (53%), Gaps = 18/134 (13%)
Query: 93 CAFFAESLQSCGGQIIPPANYL---RE---------VYKHVQVGFGRVGTHWWAFQLQGD 140
AF E +Q G ++P YL RE + +Q G R G W A +
Sbjct: 225 AAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTG-RWLAVDYE-- 281
Query: 141 DIIPDIVTVGKPMGNG-HPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEV 199
++ PDIV +GK + G +PV+AV+ +I + + E+F+TYGGNP+ C VA A +EV
Sbjct: 282 NVRPDIVLLGKALSGGLYPVSAVLCDDDIMLTIKPG--EHFSTYGGNPLGCRVAIAALEV 339
Query: 200 LETENLREHALDVG 213
LE ENL E+A +G
Sbjct: 340 LEEENLAENADKLG 353
>pdb|3N5M|A Chain A, Crystals Structure Of A Bacillus Anthracis
Aminotransferase
pdb|3N5M|B Chain B, Crystals Structure Of A Bacillus Anthracis
Aminotransferase
pdb|3N5M|C Chain C, Crystals Structure Of A Bacillus Anthracis
Aminotransferase
pdb|3N5M|D Chain D, Crystals Structure Of A Bacillus Anthracis
Aminotransferase
Length = 452
Score = 73.9 bits (180), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 49/146 (33%), Positives = 76/146 (52%), Gaps = 20/146 (13%)
Query: 94 AFFAESLQSCGGQIIPPANYLREVYKHVQ------------VGFGRVGTHWWAFQLQGDD 141
AF E + + GG + P +Y + V++ Q GFGR G AF D
Sbjct: 218 AFIXEPIITGGGILXAPQDYXKAVHETCQKHGALLISDEVICGFGRTGK---AFGFXNYD 274
Query: 142 IIPDIVTVGKPMGNGH-PVAAVITTKEIAKSFQETG-VEYF---NTYGGNPVSCAVANAV 196
+ PDI+T K + + + P++A +EI ++F+ G E+F NT+GGNP +CA+A
Sbjct: 275 VKPDIITXAKGITSAYLPLSATAVKREIYEAFKGKGEYEFFRHINTFGGNPAACALALKN 334
Query: 197 MEVLETENLREHALDVGNQLHTPKKE 222
+E++E ENL E + G+ L KE
Sbjct: 335 LEIIENENLIERSAQXGSLLLEQLKE 360
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 22/30 (73%)
Query: 1 MARYPLIGDVRGIGLFVGVELVTCRKQKTP 30
+ +PL+GD+RG GL VG+ELV ++ K P
Sbjct: 362 IGEHPLVGDIRGKGLLVGIELVNDKETKEP 391
>pdb|2BYJ|A Chain A, Ornithine Aminotransferase Mutant Y85i
pdb|2BYJ|B Chain B, Ornithine Aminotransferase Mutant Y85i
pdb|2BYJ|C Chain C, Ornithine Aminotransferase Mutant Y85i
Length = 439
Score = 72.0 bits (175), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 49/134 (36%), Positives = 71/134 (52%), Gaps = 18/134 (13%)
Query: 93 CAFFAESLQSCGGQIIPPANYL---RE---------VYKHVQVGFGRVGTHWWAFQLQGD 140
AF E +Q G ++P YL RE + +Q G R G W A +
Sbjct: 225 AAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTG-RWLAVDYE-- 281
Query: 141 DIIPDIVTVGKPMGNG-HPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEV 199
++ PDIV +GK + G +PV+AV+ +I + + E+ +TYGGNP+ C VA A +EV
Sbjct: 282 NVRPDIVLLGKALSGGLYPVSAVLCDDDIMLTIKPG--EHGSTYGGNPLGCRVAIAALEV 339
Query: 200 LETENLREHALDVG 213
LE ENL E+A +G
Sbjct: 340 LEEENLAENADKLG 353
>pdb|1OAT|A Chain A, Ornithine Aminotransferase
pdb|1OAT|B Chain B, Ornithine Aminotransferase
pdb|1OAT|C Chain C, Ornithine Aminotransferase
pdb|2OAT|A Chain A, Ornithine Aminotransferase Complexed With
5-Fluoromethylornithine
pdb|2OAT|B Chain B, Ornithine Aminotransferase Complexed With
5-Fluoromethylornithine
pdb|2OAT|C Chain C, Ornithine Aminotransferase Complexed With
5-Fluoromethylornithine
Length = 439
Score = 72.0 bits (175), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 49/134 (36%), Positives = 71/134 (52%), Gaps = 18/134 (13%)
Query: 93 CAFFAESLQSCGGQIIPPANYL---RE---------VYKHVQVGFGRVGTHWWAFQLQGD 140
AF E +Q G ++P YL RE + +Q G R G W A +
Sbjct: 225 AAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTG-RWLAVDYE-- 281
Query: 141 DIIPDIVTVGKPMGNG-HPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEV 199
++ PDIV +GK + G +PV+AV+ +I + + E+ +TYGGNP+ C VA A +EV
Sbjct: 282 NVRPDIVLLGKALSGGLYPVSAVLCDDDIMLTIKPG--EHGSTYGGNPLGCRVAIAALEV 339
Query: 200 LETENLREHALDVG 213
LE ENL E+A +G
Sbjct: 340 LEEENLAENADKLG 353
>pdb|2CAN|A Chain A, Human Ornithine Aminotransferase Complexed With L-Canaline
pdb|2CAN|B Chain B, Human Ornithine Aminotransferase Complexed With L-Canaline
pdb|2CAN|C Chain C, Human Ornithine Aminotransferase Complexed With L-Canaline
pdb|1GBN|A Chain A, Human Ornithine Aminotransferase Complexed With The
Neurotoxin Gabaculine
pdb|1GBN|B Chain B, Human Ornithine Aminotransferase Complexed With The
Neurotoxin Gabaculine
pdb|1GBN|C Chain C, Human Ornithine Aminotransferase Complexed With The
Neurotoxin Gabaculine
Length = 402
Score = 71.6 bits (174), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 49/134 (36%), Positives = 71/134 (52%), Gaps = 18/134 (13%)
Query: 93 CAFFAESLQSCGGQIIPPANYL---RE---------VYKHVQVGFGRVGTHWWAFQLQGD 140
AF E +Q G ++P YL RE + +Q G R G W A +
Sbjct: 188 AAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTG-RWLAVDYE-- 244
Query: 141 DIIPDIVTVGKPMGNG-HPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEV 199
++ PDIV +GK + G +PV+AV+ +I + + E+ +TYGGNP+ C VA A +EV
Sbjct: 245 NVRPDIVLLGKALSGGLYPVSAVLCDDDIMLTIKPG--EHGSTYGGNPLGCRVAIAALEV 302
Query: 200 LETENLREHALDVG 213
LE ENL E+A +G
Sbjct: 303 LEEENLAENADKLG 316
>pdb|2PB0|A Chain A, Structure Of Biosynthetic N-Acetylornithine
Aminotransferase From Salmonella Typhimurium: Studies On
Substrate Specificity And Inhibitor Binding
pdb|2PB0|B Chain B, Structure Of Biosynthetic N-Acetylornithine
Aminotransferase From Salmonella Typhimurium: Studies On
Substrate Specificity And Inhibitor Binding
pdb|2PB2|A Chain A, Structure Of Biosynthetic N-Acetylornithine
Aminotransferase From Salmonella Typhimurium: Studies On
Substrate Specificity And Inhibitor Binding
pdb|2PB2|B Chain B, Structure Of Biosynthetic N-Acetylornithine
Aminotransferase From Salmonella Typhimurium: Studies On
Substrate Specificity And Inhibitor Binding
Length = 420
Score = 71.2 bits (173), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 44/122 (36%), Positives = 65/122 (53%), Gaps = 17/122 (13%)
Query: 93 CAFFAESLQSCGGQIIPPANYLRE------------VYKHVQVGFGRVGTHWWAFQLQGD 140
CA E +Q GG +L+ V+ VQ G GR G +A+ G
Sbjct: 203 CAVVVEPIQGEGGVQAATPEFLKGLRDLCDEHQALLVFDEVQCGMGRTGD-LFAYMHYG- 260
Query: 141 DIIPDIVTVGKPMGNGHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVL 200
+ PDI+T K +G G PV+A++TT+EIA +F + +TYGGNP++CAVA A +++
Sbjct: 261 -VTPDILTSAKALGGGFPVSAMLTTQEIASAFHVG--SHGSTYGGNPLACAVAGAAFDII 317
Query: 201 ET 202
T
Sbjct: 318 NT 319
>pdb|2EO5|A Chain A, Crystal Structure Of 4-Aminobutyrate Aminotransferase From
Sulfolobus Tokodaii Strain7
Length = 419
Score = 70.9 bits (172), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 52/197 (26%), Positives = 95/197 (48%), Gaps = 23/197 (11%)
Query: 31 ATSEAQHVITRPPVRMSTEAPCPDVYRGKYPADKYPD-EDLGVKYAQDVQDLIEAMGRNG 89
A+ Q I P + P P+ YR + + Y + +L + + ++D I
Sbjct: 151 ASKAVQRSIVGPFMPGVIHVPYPNPYRNPWHINGYENPSELVNRVIEFIEDYIFVNLVPP 210
Query: 90 KRPCAFFAESLQSCGGQIIPPANYLREVYK------------HVQVGFGRVGTHWWAFQL 137
+ F E +Q GG +IPP N+ E+ K VQ+G GR G F +
Sbjct: 211 EEVAGIFFEPIQGEGGYVIPPKNFFAELQKLAKKYGILLVDDEVQMGLGRTGK---LFAI 267
Query: 138 QGDDIIPDIVTVGKPMGNG-HPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAV 196
+ + +PD++T+ K +G G P+ A I K++ F+ + NT+GGN ++CA+ + V
Sbjct: 268 ENFNTVPDVITLAKALGGGIMPIGATIFRKDL--DFKPG--MHSNTFGGNALACAIGSKV 323
Query: 197 MEVLETENLREHALDVG 213
++++ ++L H ++G
Sbjct: 324 IDIV--KDLLPHVNEIG 338
>pdb|1Z7D|A Chain A, Ornithine Aminotransferase Py00104 From Plasmodium Yoelii
pdb|1Z7D|B Chain B, Ornithine Aminotransferase Py00104 From Plasmodium Yoelii
pdb|1Z7D|C Chain C, Ornithine Aminotransferase Py00104 From Plasmodium Yoelii
pdb|1Z7D|D Chain D, Ornithine Aminotransferase Py00104 From Plasmodium Yoelii
pdb|1Z7D|E Chain E, Ornithine Aminotransferase Py00104 From Plasmodium Yoelii
pdb|1Z7D|F Chain F, Ornithine Aminotransferase Py00104 From Plasmodium Yoelii
Length = 433
Score = 70.5 bits (171), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 48/149 (32%), Positives = 73/149 (48%), Gaps = 20/149 (13%)
Query: 80 DLIEAMGRNGKRP--CAFFAESLQSCGGQIIPPANYLREVYK------------HVQVGF 125
D +EA+ K P CAF E +Q G I+P NYL+ VY VQ G
Sbjct: 199 DDLEALEEELKDPNVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGL 258
Query: 126 GRVGTHWWAFQLQGDDIIPDIVTVGKPMGNGH-PVAAVITTKEIAKSFQETGVEYFNTYG 184
GR G ++ PD++ +GK + GH P++AV+ +I + E+ +TYG
Sbjct: 259 GRTGKLLCVHHY---NVKPDVILLGKALSGGHYPISAVLANDDIMLVIKPG--EHGSTYG 313
Query: 185 GNPVSCAVANAVMEVLETENLREHALDVG 213
GNP++ ++ + VL E L E+A +G
Sbjct: 314 GNPLAASICVEALNVLINEKLCENAEKLG 342
>pdb|3NX3|A Chain A, Crystal Structure Of Acetylornithine Aminotransferase
(Argd) From Campylobacter Jejuni
pdb|3NX3|B Chain B, Crystal Structure Of Acetylornithine Aminotransferase
(Argd) From Campylobacter Jejuni
Length = 395
Score = 70.1 bits (170), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 51/154 (33%), Positives = 76/154 (49%), Gaps = 25/154 (16%)
Query: 71 GVKYAQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVYK----------- 119
GVK+A+ D+ ++ CA ES+Q GG I PAN ++ YK
Sbjct: 160 GVKFAK-YNDISSVEKLVNEKTCAIILESVQGEGG--INPAN--KDFYKALRKLCDEKDI 214
Query: 120 -----HVQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNGHPVAAVITTKEIAKSFQE 174
+Q G GR G F + I+PDI T K +G G V A + +++A + E
Sbjct: 215 LLIADEIQCGXGRSGKF---FAYEHAQILPDIXTSAKALGCGLSVGAFVINQKVASNSLE 271
Query: 175 TGVEYFNTYGGNPVSCAVANAVMEVLETENLREH 208
G ++ +TYGGNP+ CA NAV E+ + E + E+
Sbjct: 272 AG-DHGSTYGGNPLVCAGVNAVFEIFKEEKILEN 304
>pdb|3DU4|A Chain A, Crystal Structure Of 7-Keto-8-Aminopelargonic Acid Bound
7,8- Diaminopelargonic Acid Synthase In Bacillus
Subtilis
pdb|3DU4|B Chain B, Crystal Structure Of 7-Keto-8-Aminopelargonic Acid Bound
7,8- Diaminopelargonic Acid Synthase In Bacillus
Subtilis
Length = 448
Score = 68.2 bits (165), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 60/203 (29%), Positives = 96/203 (47%), Gaps = 29/203 (14%)
Query: 34 EAQHVITRPPVRMSTEAPCPDVYRGKYPADKYPDEDLGVKYAQDVQDLIEAMGRNGKRPC 93
E H + P + S +AP P VYR + D PDE Q +++L + + + +
Sbjct: 160 ELFHHVYGPLMFESYKAPIPYVYRSE-SGD--PDE----CRDQXLRELAQLLEEHHEEIA 212
Query: 94 AFFAESL-QSCGGQIIPPANYL---RE---------VYKHVQVGFGRVGTHWWAFQLQGD 140
A ES+ Q G I+ P YL RE + V GFGR G F + +
Sbjct: 213 ALSIESMVQGASGMIVMPEGYLAGVRELCTTYDVLMIVDEVATGFGRTGK---MFACEHE 269
Query: 141 DIIPDIVTVGKPMGNGH-PVAAVITTKEIAKSFQ---ETGVEYFN--TYGGNPVSCAVAN 194
++ PD++ GK + G+ P+A T++I K+F E +F+ +Y GN + CAVA
Sbjct: 270 NVQPDLMAAGKGITGGYLPIAVTFATEDIYKAFYDDYENLKTFFHGHSYTGNQLGCAVAL 329
Query: 195 AVMEVLETENLREHALDVGNQLH 217
+ + E+EN+ E + +LH
Sbjct: 330 ENLALFESENIVEQVAEKSKKLH 352
Score = 29.3 bits (64), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 5 PLIGDVRGIGLFVGVELVTCRKQKTP 30
P +GD+R +G G ELV ++ K P
Sbjct: 362 PHVGDIRQLGFMCGAELVRSKETKEP 387
>pdb|3DOD|A Chain A, Crystal Structure Of Plp Bound 7,8-diaminopelargonic Acid
Synthase In Bacillus Subtilis
pdb|3DOD|B Chain B, Crystal Structure Of Plp Bound 7,8-diaminopelargonic Acid
Synthase In Bacillus Subtilis
pdb|3DRD|A Chain A, Crystal Structure Of 7,8 Diaminopelargonic Acid Synthase
Apoenzyme In Bacillus Subtilis
pdb|3DRD|B Chain B, Crystal Structure Of 7,8 Diaminopelargonic Acid Synthase
Apoenzyme In Bacillus Subtilis
Length = 448
Score = 67.4 bits (163), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 60/203 (29%), Positives = 96/203 (47%), Gaps = 29/203 (14%)
Query: 34 EAQHVITRPPVRMSTEAPCPDVYRGKYPADKYPDEDLGVKYAQDVQDLIEAMGRNGKRPC 93
E H + P + S +AP P VYR + D PDE Q +++L + + + +
Sbjct: 160 ELFHHVYGPLMFESYKAPIPYVYRSE-SGD--PDE----CRDQCLRELAQLLEEHHEEIA 212
Query: 94 AFFAESL-QSCGGQIIPPANYL---RE---------VYKHVQVGFGRVGTHWWAFQLQGD 140
A ES+ Q G I+ P YL RE + V GFGR G F + +
Sbjct: 213 ALSIESMVQGASGMIVMPEGYLAGVRELCTTYDVLMIVDEVATGFGRTGK---MFACEHE 269
Query: 141 DIIPDIVTVGKPMGNGH-PVAAVITTKEIAKSFQ---ETGVEYFN--TYGGNPVSCAVAN 194
++ PD++ GK + G+ P+A T++I K+F E +F+ +Y GN + CAVA
Sbjct: 270 NVQPDLMAAGKGITGGYLPIAVTFATEDIYKAFYDDYENLKTFFHGHSYTGNQLGCAVAL 329
Query: 195 AVMEVLETENLREHALDVGNQLH 217
+ + E+EN+ E + +LH
Sbjct: 330 ENLALFESENIVEQVAEKSKKLH 352
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 5 PLIGDVRGIGLFVGVELVTCRKQKTP 30
P +GD+R +G G ELV ++ K P
Sbjct: 362 PHVGDIRQLGFMCGAELVRSKETKEP 387
>pdb|4ADB|A Chain A, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADB|B Chain B, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADB|C Chain C, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADB|D Chain D, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADC|A Chain A, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADC|B Chain B, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADC|C Chain C, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADC|D Chain D, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADD|A Chain A, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADD|B Chain B, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADD|C Chain C, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADD|D Chain D, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADE|A Chain A, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADE|B Chain B, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
Length = 406
Score = 64.7 bits (156), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 66/123 (53%), Gaps = 19/123 (15%)
Query: 93 CAFFAESLQSCGGQIIPPANY----LRE---------VYKHVQVGFGRVGTHWWAFQLQG 139
CA E +Q GG ++P +N LRE ++ VQ G GR G +A+ G
Sbjct: 185 CAVIVEPIQGEGG-VVPASNAFLQGLRELCNRHNALLIFDEVQTGVGRTG-ELYAYMHYG 242
Query: 140 DDIIPDIVTVGKPMGNGHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEV 199
+ PD++T K +G G PV A++ T+E A+ T + TYGGNP++ AVA V+E+
Sbjct: 243 --VTPDLLTTAKALGGGFPVGALLATEECARVM--TVGTHGTTYGGNPLASAVAGKVLEL 298
Query: 200 LET 202
+ T
Sbjct: 299 INT 301
>pdb|2E54|A Chain A, Crystal Structure Of Acetylornithine Aminotransferase From
Thermotoga Maritima
Length = 385
Score = 63.5 bits (153), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 83/178 (46%), Gaps = 25/178 (14%)
Query: 61 PADKYPDEDL--GVKYAQ--DVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLRE 116
P + P E L G +Y + +V+DL M + CA F E +Q G + +L E
Sbjct: 140 PKYQKPFEPLVPGFEYFEFNNVEDLRRKMSED---VCAVFLEPIQGESGIVPATKEFLEE 196
Query: 117 ------------VYKHVQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNGHPVAAVIT 164
V+ VQ G GR G +A+Q G ++PD++T K +G G P+ AVI
Sbjct: 197 ARKLCDEYDALLVFDEVQCGMGRTG-KLFAYQKYG--VVPDVLTTAKGLGGGVPIGAVIV 253
Query: 165 TKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLETENLREHALDVGNQLHTPKKE 222
+ + E G ++ T+GGNP++C V++ L E E + GN L +E
Sbjct: 254 NER--ANVLEPG-DHGTTFGGNPLACRAGVTVIKELTKEGFLEEVEEKGNYLMKKLQE 308
>pdb|3LG0|A Chain A, Structure Of Plasmodium Falciparum Ornithine
Delta-Aminotransferase
pdb|3LG0|B Chain B, Structure Of Plasmodium Falciparum Ornithine
Delta-Aminotransferase
pdb|3LG0|C Chain C, Structure Of Plasmodium Falciparum Ornithine
Delta-Aminotransferase
pdb|3LG0|D Chain D, Structure Of Plasmodium Falciparum Ornithine
Delta-Aminotransferase
pdb|3NTJ|A Chain A, Redox Regulation Of Plasmodium Falciparum Ornithine Delta-
Aminotransferase
pdb|3NTJ|B Chain B, Redox Regulation Of Plasmodium Falciparum Ornithine Delta-
Aminotransferase
pdb|3NTJ|C Chain C, Redox Regulation Of Plasmodium Falciparum Ornithine Delta-
Aminotransferase
pdb|3NTJ|D Chain D, Redox Regulation Of Plasmodium Falciparum Ornithine Delta-
Aminotransferase
Length = 422
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 74/153 (48%), Gaps = 28/153 (18%)
Query: 80 DLIEAMGRNGKRP--CAFFAESLQSCGGQIIPPANYL------------REVYKHVQVGF 125
D +EA+ + + P CAF E +Q G I+P +Y V VQ G
Sbjct: 180 DDLEALEKELQDPNVCAFIVEPVQGEAGVIVPSDSYFPGVASLCKKYNVLFVADEVQTGL 239
Query: 126 GRVG----THWWAFQLQGDDIIPDIVTVGKPMGNGH-PVAAVITTKEIAKSFQETGVEYF 180
GR G TH + + PD++ +GK + GH P++A++ ++ + E+
Sbjct: 240 GRTGKLLCTHHYGVK-------PDVILLGKALSGGHYPISAILANDDVMLVLKPG--EHG 290
Query: 181 NTYGGNPVSCAVANAVMEVLETENLREHALDVG 213
+TYGGNP++ A+ ++VL E L E+A +G
Sbjct: 291 STYGGNPLAAAICVEALKVLINEKLCENADKLG 323
>pdb|1SZK|A Chain A, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: E211s
pdb|1SZK|B Chain B, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: E211s
pdb|1SZK|C Chain C, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: E211s
pdb|1SZK|D Chain D, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: E211s
Length = 426
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 52/100 (52%), Gaps = 5/100 (5%)
Query: 117 VYKHVQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNGHPVAAVITTKEIAKSFQETG 176
+ VQ G GR GT F ++ + PD+ T K + G P+A V E+ + G
Sbjct: 237 IADEVQSGAGRTGT---LFAMEQMGVAPDLTTFAKSIAGGFPLAGVTGRAEVMDAVAPGG 293
Query: 177 VEYFNTYGGNPVSCAVANAVMEVLETENLREHALDVGNQL 216
+ TY GNP++C A V++V E ENL + A D+G +L
Sbjct: 294 LG--GTYAGNPIACVAALEVLKVFEQENLLQKANDLGQKL 331
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 19/39 (48%)
Query: 3 RYPLIGDVRGIGLFVGVELVTCRKQKTPATSEAQHVITR 41
++P IGDVRG+G + +EL P ++ R
Sbjct: 341 KHPEIGDVRGLGAMIAIELFEDGDHNKPDAKLTAEIVAR 379
>pdb|3OKS|A Chain A, Crystal Structure Of 4-Aminobutyrate Transaminase From
Mycobacterium Smegmatis
pdb|3OKS|B Chain B, Crystal Structure Of 4-Aminobutyrate Transaminase From
Mycobacterium Smegmatis
pdb|3OKS|C Chain C, Crystal Structure Of 4-Aminobutyrate Transaminase From
Mycobacterium Smegmatis
pdb|3OKS|D Chain D, Crystal Structure Of 4-Aminobutyrate Transaminase From
Mycobacterium Smegmatis
Length = 451
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 77/178 (43%), Gaps = 28/178 (15%)
Query: 52 CPDVYRG--KYPADKYPDEDLGVKYAQD----VQDLIEAMGRN--GKRPCAFFAESLQSC 103
P++YR YP + D + G + A D + I + + A E +Q
Sbjct: 183 APEIYRAPLSYP---FRDAEFGKELATDGELAAKRAITVIDKQIGADNLAAVVIEPIQGE 239
Query: 104 GGQIIPPANYLRE------------VYKHVQVGFGRVGTHWWAFQLQGDDIIPDIVTVGK 151
GG I+P +L + VQ GF R G F + + I PD++
Sbjct: 240 GGFIVPADGFLPTLLDWCRKNDVVFIADEVQTGFARTGAM---FACEHEGIDPDLIVTAX 296
Query: 152 PMGNGHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLETENLREHA 209
+ G P++AV EI S +G+ TYGGNP++CA A A +E +E+E L A
Sbjct: 297 GIAGGLPLSAVTGRAEIMDSPHVSGLG--GTYGGNPIACAAALATIETIESEGLVARA 352
>pdb|1SZS|A Chain A, The Structure Of Gamma-aminobutyrate Aminotransferase
Mutant: I50q
pdb|1SZS|B Chain B, The Structure Of Gamma-aminobutyrate Aminotransferase
Mutant: I50q
pdb|1SZS|C Chain C, The Structure Of Gamma-aminobutyrate Aminotransferase
Mutant: I50q
pdb|1SZS|D Chain D, The Structure Of Gamma-aminobutyrate Aminotransferase
Mutant: I50q
Length = 426
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 52/100 (52%), Gaps = 5/100 (5%)
Query: 117 VYKHVQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNGHPVAAVITTKEIAKSFQETG 176
+ VQ G GR GT F ++ + PD+ T K + G P+A V E+ + G
Sbjct: 237 IADEVQSGAGRTGT---LFAMEQMGVAPDLTTFAKSIAGGFPLAGVTGRAEVMDAVAPGG 293
Query: 177 VEYFNTYGGNPVSCAVANAVMEVLETENLREHALDVGNQL 216
+ TY GNP++C A V++V E ENL + A D+G +L
Sbjct: 294 LG--GTYAGNPIACVAALEVLKVFEQENLLQKANDLGQKL 331
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 19/39 (48%)
Query: 3 RYPLIGDVRGIGLFVGVELVTCRKQKTPATSEAQHVITR 41
++P IGDVRG+G + +EL P ++ R
Sbjct: 341 KHPEIGDVRGLGAMIAIELFEDGDHNKPDAKLTAEIVAR 379
>pdb|1SF2|A Chain A, Structure Of E. Coli Gamma-Aminobutyrate Aminotransferase
pdb|1SF2|B Chain B, Structure Of E. Coli Gamma-Aminobutyrate Aminotransferase
pdb|1SF2|C Chain C, Structure Of E. Coli Gamma-Aminobutyrate Aminotransferase
pdb|1SF2|D Chain D, Structure Of E. Coli Gamma-Aminobutyrate Aminotransferase
pdb|1SFF|A Chain A, Structure Of Gamma-Aminobutyrate Aminotransferase Complex
With Aminooxyacetate
pdb|1SFF|B Chain B, Structure Of Gamma-Aminobutyrate Aminotransferase Complex
With Aminooxyacetate
pdb|1SFF|C Chain C, Structure Of Gamma-Aminobutyrate Aminotransferase Complex
With Aminooxyacetate
pdb|1SFF|D Chain D, Structure Of Gamma-Aminobutyrate Aminotransferase Complex
With Aminooxyacetate
Length = 426
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 52/100 (52%), Gaps = 5/100 (5%)
Query: 117 VYKHVQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNGHPVAAVITTKEIAKSFQETG 176
+ VQ G GR GT F ++ + PD+ T K + G P+A V E+ + G
Sbjct: 237 IADEVQSGAGRTGT---LFAMEQMGVAPDLTTFAKSIAGGFPLAGVTGRAEVMDAVAPGG 293
Query: 177 VEYFNTYGGNPVSCAVANAVMEVLETENLREHALDVGNQL 216
+ TY GNP++C A V++V E ENL + A D+G +L
Sbjct: 294 LG--GTYAGNPIACVAALEVLKVFEQENLLQKANDLGQKL 331
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 19/39 (48%)
Query: 3 RYPLIGDVRGIGLFVGVELVTCRKQKTPATSEAQHVITR 41
++P IGDVRG+G + +EL P ++ R
Sbjct: 341 KHPEIGDVRGLGAMIAIELFEDGDHNKPDAKLTAEIVAR 379
>pdb|2EH6|A Chain A, Crystal Structure Of Acetylornithine Aminotransferase From
Aquifex Aeolicus Vf5
pdb|2EH6|B Chain B, Crystal Structure Of Acetylornithine Aminotransferase From
Aquifex Aeolicus Vf5
Length = 375
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 60/106 (56%), Gaps = 7/106 (6%)
Query: 117 VYKHVQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNGHPVAAVITTKEIAKSFQETG 176
+ VQ G GR G ++A+Q ++ PD++ + K +G G P+ A++ +E+A+SF T
Sbjct: 210 IIDEVQTGIGRTG-EFYAYQ--HFNLKPDVIALAKGLGGGVPIGAILAREEVAQSF--TP 264
Query: 177 VEYFNTYGGNPVSCAVANAVMEVLETENLREHALDVGNQLHTPKKE 222
+ +T+GGNP++C V++ E E L H +VGN KE
Sbjct: 265 GSHGSTFGGNPLACRAGTVVVD--EVEKLLPHVREVGNYFKEKLKE 308
>pdb|1VEF|A Chain A, Acetylornithine Aminotransferase From Thermus Thermophilus
Hb8
pdb|1VEF|B Chain B, Acetylornithine Aminotransferase From Thermus Thermophilus
Hb8
pdb|1WKG|A Chain A, Acetylornithine Aminotransferase From Thermus Thermophilus
Hb8
pdb|1WKG|B Chain B, Acetylornithine Aminotransferase From Thermus Thermophilus
Hb8
pdb|1WKH|A Chain A, Acetylornithine Aminotransferase From Thermus Thermophilus
Hb8
pdb|1WKH|B Chain B, Acetylornithine Aminotransferase From Thermus Thermophilus
Hb8
Length = 395
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 52/97 (53%), Gaps = 5/97 (5%)
Query: 117 VYKHVQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNGHPVAAVITTKEIAKSFQETG 176
+ +Q G GR G F + I+PDI+T+ K +G G P+ + +E+A+S + G
Sbjct: 223 ILDEIQTGMGRTGKR---FAFEHFGIVPDILTLAKALGGGVPLGVAVMREEVARSMPKGG 279
Query: 177 VEYFNTYGGNPVSCAVANAVMEVLETENLREHALDVG 213
+ T+GGNP++ A A + LE L E A ++G
Sbjct: 280 --HGTTFGGNPLAMAAGVAAIRYLERTRLWERAAELG 314
>pdb|3I5T|A Chain A, Crystal Structure Of Aminotransferase Prk07036 From
Rhodobacter Sphaeroides Kd131
pdb|3I5T|B Chain B, Crystal Structure Of Aminotransferase Prk07036 From
Rhodobacter Sphaeroides Kd131
Length = 476
Score = 61.6 bits (148), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 80/157 (50%), Gaps = 22/157 (14%)
Query: 76 QDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANY------------LREVYKHVQV 123
Q+ +D IE++G + AF AE + + GG IIPPA Y + + V
Sbjct: 208 QEFEDRIESLGPD--TIAAFLAEPILASGGVIIPPAGYHARFKAICEKHDILYISDEVVT 265
Query: 124 GFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNGH-PVAAVITTKEIAK--SFQETGVEYF 180
GFGR G W+A + + ++PDI+T K + +G+ P+ + ++ + S + +F
Sbjct: 266 GFGRCG-EWFASE-KVFGVVPDIITFAKGVTSGYVPLGGLAISEAVLARISGENAKGSWF 323
Query: 181 N---TYGGNPVSCAVANAVMEVLETENLREHALDVGN 214
TY PV+CA A A +E++E E + + A ++ +
Sbjct: 324 TNGYTYSNQPVACAAALANIELMEREGIVDQAREMAD 360
>pdb|2ORD|A Chain A, Crystal Structure Of Acetylornithine Aminotransferase (Ec
2.6.1.11) (Acoat) (Tm1785) From Thermotoga Maritima At
1.40 A Resolution
pdb|2ORD|B Chain B, Crystal Structure Of Acetylornithine Aminotransferase (Ec
2.6.1.11) (Acoat) (Tm1785) From Thermotoga Maritima At
1.40 A Resolution
Length = 397
Score = 61.6 bits (148), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 75/167 (44%), Gaps = 32/167 (19%)
Query: 68 EDLGVKYAQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLRE----------- 116
EDL K ++DV CA F E +Q G + +L E
Sbjct: 174 EDLRRKXSEDV--------------CAVFLEPIQGESGIVPATKEFLEEARKLCDEYDAL 219
Query: 117 -VYKHVQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNGHPVAAVITTKEIAKSFQET 175
V+ VQ G GR G +A+Q G ++PD++T K +G G P+ AVI + + E
Sbjct: 220 LVFDEVQCGXGRTG-KLFAYQKYG--VVPDVLTTAKGLGGGVPIGAVIVNER--ANVLEP 274
Query: 176 GVEYFNTYGGNPVSCAVANAVMEVLETENLREHALDVGNQLHTPKKE 222
G ++ T+GGNP++C V++ L E E + GN L +E
Sbjct: 275 G-DHGTTFGGNPLACRAGVTVIKELTKEGFLEEVEEKGNYLXKKLQE 320
>pdb|3R4T|A Chain A, Crystal Structure Of 4-Aminobutyrate Aminotransferase Gabt
From Mycobacterium Marinum Covalently Bound To Pyridoxal
Phosphate
Length = 467
Score = 60.5 bits (145), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 79/176 (44%), Gaps = 24/176 (13%)
Query: 52 CPDVYRG--KYP-ADKYPDEDL---GVKYAQDVQDLIEAMGRNGKRPCAFFAESLQSCGG 105
P++YR YP D D+D+ G A+ +LI+ A E + GG
Sbjct: 200 APEIYRAPVSYPYRDNLLDKDIATDGELAAERAINLIDKQ-IGAANLAAVIIEPIAGEGG 258
Query: 106 QIIPPANYLREVYK------------HVQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPM 153
I+P +L + + VQ GF R G F +++ PD++ +
Sbjct: 259 FIVPADGFLPALQRWCRDNDVVFIADEVQTGFARTGAM---FACDHENVEPDLIVTAXGI 315
Query: 154 GNGHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLETENLREHA 209
+G P++AV EI + +G+ T+GGNPV+CA A A +E +E + + E A
Sbjct: 316 ADGFPLSAVTGRAEIMDAPHTSGLG--GTFGGNPVACAAALATIETIERDGMVERA 369
>pdb|1SZU|A Chain A, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: V241a
pdb|1SZU|B Chain B, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: V241a
pdb|1SZU|C Chain C, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: V241a
pdb|1SZU|D Chain D, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: V241a
Length = 426
Score = 60.5 bits (145), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 51/100 (51%), Gaps = 5/100 (5%)
Query: 117 VYKHVQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNGHPVAAVITTKEIAKSFQETG 176
+ Q G GR GT F ++ + PD+ T K + G P+A V E+ + G
Sbjct: 237 IADEAQSGAGRTGT---LFAMEQMGVAPDLTTFAKSIAGGFPLAGVTGRAEVMDAVAPGG 293
Query: 177 VEYFNTYGGNPVSCAVANAVMEVLETENLREHALDVGNQL 216
+ TY GNP++C A V++V E ENL + A D+G +L
Sbjct: 294 LG--GTYAGNPIACVAALEVLKVFEQENLLQKANDLGQKL 331
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 19/39 (48%)
Query: 3 RYPLIGDVRGIGLFVGVELVTCRKQKTPATSEAQHVITR 41
++P IGDVRG+G + +EL P ++ R
Sbjct: 341 KHPEIGDVRGLGAMIAIELFEDGDHNKPDAKLTAEIVAR 379
>pdb|3NUI|A Chain A, Crystal Structure Of Omega-Transferase From Vibrio
Fluvialis Js17
pdb|3NUI|B Chain B, Crystal Structure Of Omega-Transferase From Vibrio
Fluvialis Js17
Length = 478
Score = 58.5 bits (140), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 76/177 (42%), Gaps = 29/177 (16%)
Query: 52 CPDVYRGKYPADKYPDEDLGVKYAQDVQDLIEAMGRNGKRPCA-FFAESLQSCGGQIIPP 110
CP +R Y + +E + A+++++ I+ R G A FFAE + GG I P
Sbjct: 195 CPHYWR--YGEEGETEEQFVARLARELEETIQ---REGADTIAGFFAEPVMGAGGVIPPA 249
Query: 111 ANYLREVY------------KHVQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNGH- 157
Y + + V GFGR G W D PD + K + G
Sbjct: 250 KGYFQAILPILRKYDIPVISDEVICGFGRTGNTWGCVTY---DFTPDAIISSKNLTAGFF 306
Query: 158 PVAAVITTKEIAKSFQETGVEYFN------TYGGNPVSCAVANAVMEVLETENLREH 208
P+ AVI E++K ET +E T G+PV CA+A ++V+ E L E+
Sbjct: 307 PMGAVILGPELSKRL-ETAIEAIEEFPHGFTASGHPVGCAIALKAIDVVMNEGLAEN 362
Score = 28.1 bits (61), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 1 MARYPLIGDVRGIGLFVGVELVTCRKQKTP 30
+A P IG+ RGIG +E V + KTP
Sbjct: 377 IAERPNIGEYRGIGFMWALEAVKDKASKTP 406
>pdb|4E3Q|A Chain A, Pmp-Bound Form Of Aminotransferase Crystal Structure From
Vibrio Fluvialis
pdb|4E3Q|B Chain B, Pmp-Bound Form Of Aminotransferase Crystal Structure From
Vibrio Fluvialis
pdb|4E3Q|C Chain C, Pmp-Bound Form Of Aminotransferase Crystal Structure From
Vibrio Fluvialis
pdb|4E3Q|D Chain D, Pmp-Bound Form Of Aminotransferase Crystal Structure From
Vibrio Fluvialis
Length = 473
Score = 57.8 bits (138), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 74/176 (42%), Gaps = 27/176 (15%)
Query: 52 CPDVYRGKYPADKYPDEDLGVKYAQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPA 111
CP +R Y + +E + A+++++ I+ G + FFAE + GG I P
Sbjct: 201 CPHYWR--YGEEGETEEQFVARLARELEETIQREGAD--TIAGFFAEPVXGAGGVIPPAK 256
Query: 112 NYLREVY------------KHVQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNGH-P 158
Y + + V GFGR G W D PD + K + G P
Sbjct: 257 GYFQAILPILRKYDIPVISDEVICGFGRTGNTWGCVTY---DFTPDAIISSKNLTAGFFP 313
Query: 159 VAAVITTKEIAKSFQETGVEYFN------TYGGNPVSCAVANAVMEVLETENLREH 208
AVI E++K ET +E T G+PV CA+A ++V+ E L E+
Sbjct: 314 XGAVILGPELSKRL-ETAIEAIEEFPHGFTASGHPVGCAIALKAIDVVXNEGLAEN 368
Score = 27.3 bits (59), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 1 MARYPLIGDVRGIGLFVGVELVTCRKQKTP 30
+A P IG+ RGIG +E V + KTP
Sbjct: 383 IAERPNIGEYRGIGFXWALEAVKDKASKTP 412
>pdb|4A6R|A Chain A, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In The Apo Form, Crystallised
From Polyacrylic Acid
pdb|4A6R|B Chain B, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In The Apo Form, Crystallised
From Polyacrylic Acid
pdb|4A6T|A Chain A, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In Complex With Plp
pdb|4A6T|B Chain B, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In Complex With Plp
pdb|4A6T|C Chain C, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In Complex With Plp
pdb|4A6T|D Chain D, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In Complex With Plp
pdb|4A6U|A Chain A, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In The Apo Form, Crystallised
From Peg 3350
pdb|4A6U|B Chain B, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In The Apo Form, Crystallised
From Peg 3350
pdb|4A72|A Chain A, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In A Mixture Of Apo And
Plp-Bound States
pdb|4A72|B Chain B, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In A Mixture Of Apo And
Plp-Bound States
pdb|4A72|C Chain C, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In A Mixture Of Apo And
Plp-Bound States
pdb|4A72|D Chain D, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In A Mixture Of Apo And
Plp-Bound States
pdb|4AH3|A Chain A, Crystal Structure Of The Holo Omega-Transaminase From
Chromobacterium Violaceum
pdb|4AH3|B Chain B, Crystal Structure Of The Holo Omega-Transaminase From
Chromobacterium Violaceum
pdb|4AH3|C Chain C, Crystal Structure Of The Holo Omega-Transaminase From
Chromobacterium Violaceum
pdb|4AH3|D Chain D, Crystal Structure Of The Holo Omega-Transaminase From
Chromobacterium Violaceum
Length = 459
Score = 57.0 bits (136), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 54/167 (32%), Positives = 80/167 (47%), Gaps = 20/167 (11%)
Query: 59 KYPADKYPDEDLGVKYAQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVY 118
K+ D PDE GV A+ +++ I +G + + AF E +Q GG I+PPA Y E+
Sbjct: 190 KHGKDMTPDE-FGVVAARWLEEKILEIGAD--KVAAFVGEPIQGAGGVIVPPATYWPEIE 246
Query: 119 K------------HVQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNGH-PVAAVITT 165
+ V GFGR G W+ Q G PD+ T K + +G+ P+ AV
Sbjct: 247 RICRKYDVLLVADEVICGFGRTG-EWFGHQHFG--FQPDLFTAAKGLSSGYLPIGAVFVG 303
Query: 166 KEIAKSFQETG-VEYFNTYGGNPVSCAVANAVMEVLETENLREHALD 211
K +A+ G + TY G+PV AVA+A + L E + + D
Sbjct: 304 KRVAEGLIAGGDFNHGFTYSGHPVCAAVAHANVAALRDEGIVQRVKD 350
>pdb|4E3R|A Chain A, Plp-Bound Aminotransferase Mutant Crystal Structure From
Vibrio Fluvialis
pdb|4E3R|B Chain B, Plp-Bound Aminotransferase Mutant Crystal Structure From
Vibrio Fluvialis
pdb|4E3R|C Chain C, Plp-Bound Aminotransferase Mutant Crystal Structure From
Vibrio Fluvialis
pdb|4E3R|D Chain D, Plp-Bound Aminotransferase Mutant Crystal Structure From
Vibrio Fluvialis
Length = 473
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 75/177 (42%), Gaps = 29/177 (16%)
Query: 52 CPDVYRGKYPADKYPDEDLGVKYAQDVQDLIEAMGRNGKRPCA-FFAESLQSCGGQIIPP 110
CP +R Y + +E + A+++++ I+ R G A FFAE + GG I P
Sbjct: 201 CPHYWR--YGEEGETEEQFVARLARELEETIQ---REGADTIAGFFAEPVMGAGGVIPPA 255
Query: 111 ANYLREVY------------KHVQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNGH- 157
Y + + V GFGR G W D PD + + G
Sbjct: 256 KGYFQAILPILRKYDIPVISDEVVCGFGRTGNTWGCVTY---DFTPDAIISSXNLTAGFF 312
Query: 158 PVAAVITTKEIAKSFQETGVEYFN------TYGGNPVSCAVANAVMEVLETENLREH 208
P+ AVI E++K ET +E T G+PV CA+A ++V+ E L E+
Sbjct: 313 PMGAVILGPELSKRL-ETAIEAIEEFPHGFTASGHPVGCAIALKAIDVVMNEGLAEN 368
Score = 27.7 bits (60), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 1 MARYPLIGDVRGIGLFVGVELVTCRKQKTP 30
+A P IG+ RGIG +E V + KTP
Sbjct: 383 IAERPNIGEYRGIGFMWALEAVKDKASKTP 412
>pdb|3A8U|X Chain X, Crystal Structure Of Omega-Amino Acid:pyruvate
Aminotransferase
Length = 449
Score = 54.7 bits (130), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 80/178 (44%), Gaps = 29/178 (16%)
Query: 71 GVKYAQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLRE------------VY 118
G+ A ++ LIE + A F E L G ++PP YL+ V+
Sbjct: 201 GIALADELLKLIEL--HDASNIAAVFVEPLAGSAGVLVPPEGYLKRNREICNQHNILLVF 258
Query: 119 KHVQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNGH-PVAAVITTKEIAKSFQ---- 173
V GFGR G+ F + PD++ + K + NG P+ AVI + EI ++F
Sbjct: 259 DEVITGFGRTGS---MFGADSFGVTPDLMCIAKQVTNGAIPMGAVIASTEIYQTFMNQPT 315
Query: 174 -ETGVEYFN--TYGGNPVSCAVANAVMEVLETENLREHALDVG----NQLHTPKKENN 224
E VE+ + TY +PV+CA A + +L+ ENL + +V LH K N
Sbjct: 316 PEYAVEFPHGYTYSAHPVACAAGLAALCLLQKENLVQSVAEVAPHFEKALHGIKGAKN 373
>pdb|4GRX|A Chain A, Structure Of An Omega-Aminotransferase From Paracoccus
Denitrificans
pdb|4GRX|B Chain B, Structure Of An Omega-Aminotransferase From Paracoccus
Denitrificans
pdb|4GRX|C Chain C, Structure Of An Omega-Aminotransferase From Paracoccus
Denitrificans
pdb|4GRX|D Chain D, Structure Of An Omega-Aminotransferase From Paracoccus
Denitrificans
Length = 465
Score = 54.3 bits (129), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 74/176 (42%), Gaps = 27/176 (15%)
Query: 52 CPDVYRGKYPADKYPDEDLGVKYAQDVQDLIEAMGRNGKRPCA-FFAESLQSCGGQIIPP 110
CP +R Y + + + A++++D I R G A FFAE + GG I P
Sbjct: 193 CPHYWR--YGEEGETEAQFVARLARELEDTIT---REGADTIAGFFAEPVMGAGGVIPPA 247
Query: 111 ANYLREVY------------KHVQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNGH- 157
Y + + V GFGR G W D +PD + + G
Sbjct: 248 KGYFQAILPILRKYDIPMISDEVICGFGRTGNTWGCLTY---DFMPDAIISSXNLTAGFF 304
Query: 158 PVAAVITTKEIAKSFQET--GVEYF---NTYGGNPVSCAVANAVMEVLETENLREH 208
P+ AVI ++AK + +E F T G+PV CA+A ++V+ E L E+
Sbjct: 305 PMGAVILGPDLAKRVEAAVEAIEEFPHGFTASGHPVGCAIALKAIDVVMNEGLAEN 360
>pdb|2E7U|A Chain A, Crystal Structure Of Glutamate-1-Semialdehyde
2,1-Aminomutase From Thermus Thermophilus Hb8
Length = 424
Score = 53.9 bits (128), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 83/174 (47%), Gaps = 20/174 (11%)
Query: 63 DKYPDEDLGVKYAQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVYK--- 119
++Y L ++Y D + L E + R G+ A E + G ++P ++L+ +++
Sbjct: 172 EEYAKLTLVLEY-NDPEGLREVLKRRGEEIAAIIFEPVVGNAGVLVPTEDFLKALHEAKA 230
Query: 120 --------HVQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNGHPVAAVITTKEIAKS 171
V GF R+ A +L G + PD+VT+GK +G G P AA +EI +
Sbjct: 231 YGVLLIADEVMTGF-RL-AFGGATELLG--LKPDLVTLGKILGGGLPAAAYAGRREIMEK 286
Query: 172 FQETGVEY-FNTYGGNPVSCAVANAVMEVLETENLREHAL--DVGNQLHTPKKE 222
G Y T GNP++ A A +E+LE EN +A D+G +L KE
Sbjct: 287 VAPLGPVYQAGTLSGNPLAMAAGLATLELLE-ENPGYYAYLEDLGARLEAGLKE 339
>pdb|3Q8N|A Chain A, Crystal Structure Of 4-Aminobutyrate Transaminase From
Mycobacterium Smegmatis
pdb|3Q8N|B Chain B, Crystal Structure Of 4-Aminobutyrate Transaminase From
Mycobacterium Smegmatis
pdb|3Q8N|C Chain C, Crystal Structure Of 4-Aminobutyrate Transaminase From
Mycobacterium Smegmatis
pdb|3Q8N|D Chain D, Crystal Structure Of 4-Aminobutyrate Transaminase From
Mycobacterium Smegmatis
Length = 453
Score = 53.5 bits (127), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 61/136 (44%), Gaps = 17/136 (12%)
Query: 93 CAFFAESLQSCGGQIIPPANYLREVYK------------HVQVGFGRVGTHWWAFQLQGD 140
A E + GG ++P +L + K VQ GF R G F + +
Sbjct: 230 AAVVIEPVHGEGGFVVPAPGFLGALQKWCTDNGAVFVADEVQTGFARTGA---LFACEHE 286
Query: 141 DIIPDIVTVGKPMGNGHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVL 200
+++PD++ K + G P++AV EI Q G+ NP++CA A AV++ +
Sbjct: 287 NVVPDLIVTAKGIAGGLPLSAVTGRAEIMDGPQSGGLGGTYGG--NPLACAAALAVIDTI 344
Query: 201 ETENLREHALDVGNQL 216
E ENL A +G +
Sbjct: 345 ERENLVARARAIGETM 360
>pdb|4FFC|A Chain A, Crystal Structure Of A 4-Aminobutyrate Aminotransferase
(Gabt) From Mycobacterium Abscessus
pdb|4FFC|B Chain B, Crystal Structure Of A 4-Aminobutyrate Aminotransferase
(Gabt) From Mycobacterium Abscessus
pdb|4FFC|C Chain C, Crystal Structure Of A 4-Aminobutyrate Aminotransferase
(Gabt) From Mycobacterium Abscessus
pdb|4FFC|D Chain D, Crystal Structure Of A 4-Aminobutyrate Aminotransferase
(Gabt) From Mycobacterium Abscessus
Length = 453
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 75/174 (43%), Gaps = 25/174 (14%)
Query: 52 CPDVYRGKYPADKYPDED----LGVKYAQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQI 107
P+VYR PA YP D G + A+ IE + A E +Q GG I
Sbjct: 186 APEVYR--MPA-SYPLRDEPGLTGEEAARRAISRIETQ-IGAQSLAAIIIEPIQGEGGFI 241
Query: 108 IPPANYLRE------------VYKHVQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGN 155
+P +L + VQ GF R G W+A + +G I+PDIVT+ +
Sbjct: 242 VPAPGFLATLTAWASENGVVFIADEVQTGFARTGA-WFASEHEG--IVPDIVTMAXGIAG 298
Query: 156 GHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLETENLREHA 209
G P++AV E+ + G+ NPV+CA A A + V+ +L A
Sbjct: 299 GMPLSAVTGRAELMDAVYAGGLGGTYGG--NPVTCAAAVAALGVMRELDLPARA 350
>pdb|3I4J|A Chain A, Crystal Structure Of Aminotransferase, Class Iii From
Deinococcus Radiodurans
pdb|3I4J|B Chain B, Crystal Structure Of Aminotransferase, Class Iii From
Deinococcus Radiodurans
pdb|3I4J|C Chain C, Crystal Structure Of Aminotransferase, Class Iii From
Deinococcus Radiodurans
pdb|3I4J|D Chain D, Crystal Structure Of Aminotransferase, Class Iii From
Deinococcus Radiodurans
Length = 430
Score = 50.4 bits (119), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 73/170 (42%), Gaps = 19/170 (11%)
Query: 64 KYPDEDLGVKYAQDVQDLIEAMGRNGKRP-CAFFAESLQSCGGQIIPPANYLRE------ 116
K P D A+D + L + R G AF AE + + PA E
Sbjct: 162 KLPKPDPARNGAEDAEGLRALLEREGPETVAAFMAEPVVGASDAALAPAPGYYERVRDIC 221
Query: 117 -------VYKHVQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNGH-PVAAVITTKEI 168
+ V G GR G+ + G + PDI +GK + G+ P+A ++ ++
Sbjct: 222 DEAGIIFIADEVMSGMGRCGSPLALSRWSG--VTPDIAVLGKGLAAGYAPLAGLLAAPQV 279
Query: 169 AKSFQETGVEYFN--TYGGNPVSCAVANAVMEVLETENLREHALDVGNQL 216
++ + + TY G+PVS A +V++++E E+L A + G QL
Sbjct: 280 YETVMGGSGAFMHGFTYAGHPVSVAAGLSVLDIVEREDLTGAAKERGAQL 329
>pdb|2ZUK|A Chain A, The Crystal Structure Of Alpha-Amino-Epsilon-Caprolactam
Racemase From Achromobacter Obae Complexed With Epsilon
Caprolactam (Different Binding Mode)
pdb|2ZUK|B Chain B, The Crystal Structure Of Alpha-Amino-Epsilon-Caprolactam
Racemase From Achromobacter Obae Complexed With Epsilon
Caprolactam (Different Binding Mode)
pdb|3DXV|A Chain A, The Crystal Structure Of Alpha-Amino-Epsilon-Caprolactam
Racemase From Achromobacter Obae
pdb|3DXV|B Chain B, The Crystal Structure Of Alpha-Amino-Epsilon-Caprolactam
Racemase From Achromobacter Obae
Length = 439
Score = 47.4 bits (111), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 43/124 (34%), Positives = 64/124 (51%), Gaps = 18/124 (14%)
Query: 94 AFFAESLQSCGGQIIPPANYLRE------------VYKHVQVGFGRVGTHWWAFQLQGDD 141
A F E +QS GG I+PP +LR+ V V+VG R G F+ +G
Sbjct: 204 AAFIEPIQSDGGLIVPPDGFLRKFADICRAHGILVVCDEVKVGLARSG-RLHCFEHEG-- 260
Query: 142 IIPDIVTVGKPMGNGHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLE 201
+PDI+ +GK +G G P++AVI EI ++ T GNP+S A AV+E ++
Sbjct: 261 FVPDILVLGKGLGGGLPLSAVIAPAEILDCASAFAMQ---TLHGNPISAAAGLAVLETID 317
Query: 202 TENL 205
++L
Sbjct: 318 RDDL 321
Score = 43.9 bits (102), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 27/39 (69%)
Query: 3 RYPLIGDVRGIGLFVGVELVTCRKQKTPATSEAQHVITR 41
R+PLIGD+RG GL G+ELV R+ + PA +E +I R
Sbjct: 342 RHPLIGDIRGRGLACGMELVCDRQSREPARAETAKLIYR 380
>pdb|3DXW|A Chain A, The Crystal Structure Of Alpha-Amino-Epsilon-Caprolactam
Racemase From Achromobacter Obae Complexed With Epsilon
Caprolactam
pdb|3DXW|B Chain B, The Crystal Structure Of Alpha-Amino-Epsilon-Caprolactam
Racemase From Achromobacter Obae Complexed With Epsilon
Caprolactam
Length = 452
Score = 47.4 bits (111), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 43/124 (34%), Positives = 64/124 (51%), Gaps = 18/124 (14%)
Query: 94 AFFAESLQSCGGQIIPPANYLRE------------VYKHVQVGFGRVGTHWWAFQLQGDD 141
A F E +QS GG I+PP +LR+ V V+VG R G F+ +G
Sbjct: 217 AAFIEPIQSDGGLIVPPDGFLRKFADICRAHGILVVCDEVKVGLARSG-RLHCFEHEG-- 273
Query: 142 IIPDIVTVGKPMGNGHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLE 201
+PDI+ +GK +G G P++AVI EI ++ T GNP+S A AV+E ++
Sbjct: 274 FVPDILVLGKGLGGGLPLSAVIAPAEILDCASAFAMQ---TLHGNPISAAAGLAVLETID 330
Query: 202 TENL 205
++L
Sbjct: 331 RDDL 334
Score = 43.9 bits (102), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 27/39 (69%)
Query: 3 RYPLIGDVRGIGLFVGVELVTCRKQKTPATSEAQHVITR 41
R+PLIGD+RG GL G+ELV R+ + PA +E +I R
Sbjct: 355 RHPLIGDIRGRGLACGMELVCDRQSREPARAETAKLIYR 393
>pdb|2JJH|A Chain A, E243 Mutant Of M. Tuberculosis Rv3290c
Length = 449
Score = 47.4 bits (111), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 59/140 (42%), Gaps = 16/140 (11%)
Query: 95 FFAESLQSCGG-QIIPPANY--LRE---------VYKHVQVGFGRVGTHWWAFQLQGDDI 142
F AE +Q GG + P + +RE ++ VQ G G GT W QL D+
Sbjct: 235 FVAEPIQGAGGDRHFRPEFFAAMRELCDEFDALLIFDEVQTGCGLTGTAWAYQQL---DV 291
Query: 143 IPDIVTVGKPMGNGHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLET 202
PDIV GK V A E+A + +T+GGN A ++EV+E
Sbjct: 292 APDIVAFGKKT-QVCGVMAGRRVDEVADNVFAVPSRLNSTWGGNLTDMVRARRILEVIEA 350
Query: 203 ENLREHALDVGNQLHTPKKE 222
E L E A+ G L E
Sbjct: 351 EGLFERAVQHGKYLRARLDE 370
>pdb|4ATP|A Chain A, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|B Chain B, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|C Chain C, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|D Chain D, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|E Chain E, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|F Chain F, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|G Chain G, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|H Chain H, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|I Chain I, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|J Chain J, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|K Chain K, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|L Chain L, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATQ|A Chain A, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|B Chain B, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|C Chain C, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|D Chain D, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|E Chain E, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|F Chain F, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|G Chain G, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|H Chain H, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|I Chain I, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|J Chain J, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|K Chain K, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|L Chain L, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
Length = 456
Score = 47.4 bits (111), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 79/172 (45%), Gaps = 20/172 (11%)
Query: 52 CPDVYRG--KYPADKYPDEDLGVKYAQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIP 109
P+VYR YP + E G + A+ +IE G + A E +Q GG I+P
Sbjct: 186 APEVYRMPMSYPFREENPEITGAEAAKRAITMIEKQ-IGGDQVAAIIIEPIQGEGGFIVP 244
Query: 110 PANYL-------RE-----VYKHVQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNGH 157
+L +E + VQ GF R G W+A +G ++PDI+T+ K + G
Sbjct: 245 AEGFLPALSEWAKEKGIVFIADEVQSGFCRTG-EWFAVDHEG--VVPDIITMAKGIAGGL 301
Query: 158 PVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLETENLREHA 209
P++A+ ++ + G+ NPV+CA A A ++ +E +L A
Sbjct: 302 PLSAITGRADLLDAVHPGGLGGTYGG--NPVACAAALAAIDTMEQHDLNGRA 351
>pdb|3L44|A Chain A, Crystal Structure Of Bacillus Anthracis Heml-1, Glutamate
Semialdehyde Aminotransferase
pdb|3L44|B Chain B, Crystal Structure Of Bacillus Anthracis Heml-1, Glutamate
Semialdehyde Aminotransferase
Length = 434
Score = 47.4 bits (111), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 65/150 (43%), Gaps = 9/150 (6%)
Query: 76 QDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVYKHVQ-----VGFGRVGT 130
+V+ L EA+ + G A E + G + P +L +V + V V + V T
Sbjct: 187 NNVETLKEALDKWGHEVAAILVEPIVGNFGIVEPKPGFLEKVNELVHEAGALVIYDEVIT 246
Query: 131 HWWAFQLQGDDII---PDIVTVGKPMGNGHPVAAVITTKEIAKSFQETGVEY-FNTYGGN 186
+ D++ PD+ +G +G G P+ A KEI + G Y T GN
Sbjct: 247 AFRFXYGGAQDLLGVTPDLTALGXVIGGGLPIGAYGGKKEIXEQVAPLGPAYQAGTXAGN 306
Query: 187 PVSCAVANAVMEVLETENLREHALDVGNQL 216
P S A A +EVL+ E L E ++G L
Sbjct: 307 PASXASGIACLEVLQQEGLYEKLDELGATL 336
>pdb|2JJF|A Chain A, N328a Mutant Of M. Tuberculosis Rv3290c
Length = 449
Score = 47.0 bits (110), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 46/106 (43%), Gaps = 4/106 (3%)
Query: 117 VYKHVQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNGHPVAAVITTKEIAKSFQETG 176
++ VQ G G GT W QL D+ PDIV GK V A E+A +
Sbjct: 269 IFDEVQTGCGLTGTAWAYQQL---DVAPDIVAFGKKT-QVCGVMAGRRVDEVADNVFAVP 324
Query: 177 VEYFNTYGGNPVSCAVANAVMEVLETENLREHALDVGNQLHTPKKE 222
+T+GGN A ++EV+E E L E A+ G L E
Sbjct: 325 SRLASTWGGNLTDMVRARRILEVIEAEGLFERAVQHGKYLRARLDE 370
>pdb|1OHV|A Chain A, 4-aminobutyrate-aminotransferase From Pig
pdb|1OHV|B Chain B, 4-aminobutyrate-aminotransferase From Pig
pdb|1OHV|C Chain C, 4-aminobutyrate-aminotransferase From Pig
pdb|1OHV|D Chain D, 4-aminobutyrate-aminotransferase From Pig
pdb|1OHW|A Chain A, 4-Aminobutyrate-Aminotransferase Inactivated By
Gamma-Vinyl Gaba
pdb|1OHW|B Chain B, 4-Aminobutyrate-Aminotransferase Inactivated By
Gamma-Vinyl Gaba
pdb|1OHW|C Chain C, 4-Aminobutyrate-Aminotransferase Inactivated By
Gamma-Vinyl Gaba
pdb|1OHW|D Chain D, 4-Aminobutyrate-Aminotransferase Inactivated By
Gamma-Vinyl Gaba
pdb|1OHY|A Chain A, 4-Aminobutyrate-Aminotransferase Inactivated By
Gamma-Ethynyl Gaba
pdb|1OHY|B Chain B, 4-Aminobutyrate-Aminotransferase Inactivated By
Gamma-Ethynyl Gaba
pdb|1OHY|C Chain C, 4-Aminobutyrate-Aminotransferase Inactivated By
Gamma-Ethynyl Gaba
pdb|1OHY|D Chain D, 4-Aminobutyrate-Aminotransferase Inactivated By
Gamma-Ethynyl Gaba
Length = 472
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 52/200 (26%), Positives = 83/200 (41%), Gaps = 26/200 (13%)
Query: 33 SEAQHVITRPPVRMSTEAPCPDVYRGKYPADKYPDEDLG--VKYAQDVQDLIEAMGRNGK 90
S+A H I P S + P R KYP +++ E+ + ++V+DLI + K
Sbjct: 202 SKAIHKIDIP----SFDWPIAPFPRLKYPLEEFVKENQQEEARCLEEVEDLIVKYRKKKK 257
Query: 91 RPCAFFAESLQSCGGQIIPPANYLREVY----KH--------VQVGFGRVGTHWWAFQLQ 138
E +QS GG ++ R++ KH VQ G G G +WA +
Sbjct: 258 TVAGIIVEPIQSEGGDNHASDDFFRKLRDISRKHGCAFLVDEVQTGGGSTGK-FWAHEHW 316
Query: 139 GDDIIPDIVTVGKPMGNGHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVME 198
G D D++T K M G +E + FNT+ G+P + V+
Sbjct: 317 GLDDPADVMTFSKKMMTG----GFFHKEEFRPN---APYRIFNTWLGDPSKNLLLAEVIN 369
Query: 199 VLETENLREHALDVGNQLHT 218
+++ E+L +A G L T
Sbjct: 370 IIKREDLLSNAAHAGKVLLT 389
>pdb|2CIN|A Chain A, Lysine Aminotransferase From M. Tuberculosis In The
Internal Aldimine Form
pdb|2CJG|A Chain A, Lysine Aminotransferase From M. Tuberculosis In Bound Pmp
Form
pdb|2CJH|A Chain A, Lysine Aminotransferase From M. Tuberculosis In The
Internal Aldimine Form With Bound Substrate 2-
Ketoglutarate
pdb|2JJG|A Chain A, Crystal Structure Of The M. Tuberculosis Lysine-Epsilon
Aminotransferase (Rv3290c) Complexed To An Inhibitor
pdb|2CJD|A Chain A, Lysine Aminotransferase From M. Tuberculosis In External
Aldimine Form
Length = 449
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 46/106 (43%), Gaps = 4/106 (3%)
Query: 117 VYKHVQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNGHPVAAVITTKEIAKSFQETG 176
++ VQ G G GT W QL D+ PDIV GK V A E+A +
Sbjct: 269 IFDEVQTGCGLTGTAWAYQQL---DVAPDIVAFGKKT-QVCGVMAGRRVDEVADNVFAVP 324
Query: 177 VEYFNTYGGNPVSCAVANAVMEVLETENLREHALDVGNQLHTPKKE 222
+T+GGN A ++EV+E E L E A+ G L E
Sbjct: 325 SRLNSTWGGNLTDMVRARRILEVIEAEGLFERAVQHGKYLRARLDE 370
>pdb|3BV0|A Chain A, Crystal Structure Of Plp Bound 7,8-Diaminopelargonic Acid
Synthase In Mycobacterium Tuberculosis
pdb|3BV0|B Chain B, Crystal Structure Of Plp Bound 7,8-Diaminopelargonic Acid
Synthase In Mycobacterium Tuberculosis
Length = 437
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 50/104 (48%), Gaps = 7/104 (6%)
Query: 117 VYKHVQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNGH-PVAAVITTKEIAKSFQET 175
++ + GFGR G F + PDI+ VGK + G+ +AA + T ++A +
Sbjct: 252 IFDEIATGFGRTGA---LFAADHAGVSPDIMCVGKALTGGYLSLAATLCTADVAHTISAG 308
Query: 176 GVEYFN---TYGGNPVSCAVANAVMEVLETENLREHALDVGNQL 216
T+ NP++CAV+ A +E+L ++ R ++ L
Sbjct: 309 AAGALMRGPTFMANPLACAVSVASVELLLGQDWRTRITELAAGL 352
>pdb|3TFT|A Chain A, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
(Bioa) From Mycobacterium Tuberculosis, Pre-Reaction
Complex With A 3,6- Dihydropyrid-2-One Heterocycle
Inhibitor
pdb|3TFT|B Chain B, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
(Bioa) From Mycobacterium Tuberculosis, Pre-Reaction
Complex With A 3,6- Dihydropyrid-2-One Heterocycle
Inhibitor
pdb|3TFU|A Chain A, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
(Bioa) From Mycobacterium Tuberculosis, Post-Reaction
Complex With A 3,6- Dihydropyrid-2-One Heterocycle
Inhibitor
pdb|3TFU|B Chain B, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
(Bioa) From Mycobacterium Tuberculosis, Post-Reaction
Complex With A 3,6- Dihydropyrid-2-One Heterocycle
Inhibitor
Length = 457
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 52/104 (50%), Gaps = 7/104 (6%)
Query: 117 VYKHVQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNGH-PVAAVITTKEIAKSFQET 175
++ + GFGR G F + PDI+ VGK + G+ +AA + T ++A +
Sbjct: 272 IFDEIATGFGRTGA---LFAADHAGVSPDIMCVGKALTGGYLSLAATLCTADVAHTISAG 328
Query: 176 G---VEYFNTYGGNPVSCAVANAVMEVLETENLREHALDVGNQL 216
+ + T+ NP++CAV+ A +E+L ++ R ++ L
Sbjct: 329 AAGALMHGPTFMANPLACAVSVASVELLLGQDWRTRITELAAGL 372
>pdb|3LV2|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
7,8-Diaminopelargonic Acid Synthase In Complex With
Substrate Analog Sinefungin
pdb|3LV2|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis
7,8-Diaminopelargonic Acid Synthase In Complex With
Substrate Analog Sinefungin
Length = 462
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 50/104 (48%), Gaps = 7/104 (6%)
Query: 117 VYKHVQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNGH-PVAAVITTKEIAKSFQET 175
++ + GFGR G F + PDI+ VGK + G+ +AA + T ++A +
Sbjct: 277 IFDEIATGFGRTGA---LFAADHAGVSPDIMCVGKALTGGYLSLAATLCTADVAHTISAG 333
Query: 176 GVEYFN---TYGGNPVSCAVANAVMEVLETENLREHALDVGNQL 216
T+ NP++CAV+ A +E+L ++ R ++ L
Sbjct: 334 AAGALMRGPTFMANPLACAVSVASVELLLGQDWRTRITELAAGL 377
>pdb|1DTY|A Chain A, Crystal Structure Of
Adenosylmethionine-8-Amino-7-Oxonanoate Aminotransferase
With Pyridoxal Phosphate Cofactor.
pdb|1DTY|B Chain B, Crystal Structure Of
Adenosylmethionine-8-Amino-7-Oxonanoate Aminotransferase
With Pyridoxal Phosphate Cofactor
Length = 429
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 58/104 (55%), Gaps = 7/104 (6%)
Query: 117 VYKHVQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNG-HPVAAVITTKEIAKSFQET 175
+ + GFGR G F + +I PDI+ +GK + G ++A +TT+E+A++ +
Sbjct: 243 IADEIATGFGRTGK---LFACEHAEIAPDILCLGKALTGGTMTLSATLTTREVAETISDG 299
Query: 176 GVEYFN---TYGGNPVSCAVANAVMEVLETENLREHALDVGNQL 216
F T+ GNP++CA ANA + +LE+ + ++ D+ QL
Sbjct: 300 EAGCFMHGPTFMGNPLACAAANASLAILESGDWQQQVADIEVQL 343
>pdb|3FCR|A Chain A, Crystal Structure Of Putative Aminotransferase
(Yp_614685.1) From Silicibacter Sp. Tm1040 At 1.80 A
Resolution
Length = 459
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 77/165 (46%), Gaps = 24/165 (14%)
Query: 77 DVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVY----KH--------VQVG 124
+++ LIE G + AF E + GG + PPA Y + KH V G
Sbjct: 208 ELEALIEREGAD--TIAAFIGEPILGTGGIVPPPAGYWEAIQTVLNKHDILLVADEVVTG 265
Query: 125 FGRVGTHWWAFQLQGDDIIPDIVTVG-KPMGNGH-PVAAVITTKEIAKSFQ----ETG-V 177
FGR+GT F + PDI+T+ K + + + P++ I + ++ K + E G +
Sbjct: 266 FGRLGT---XFGSDHYGLEPDIITIAXKGLTSAYAPLSGSIVSDKVWKVLEQGTDENGPI 322
Query: 178 EYFNTYGGNPVSCAVANAVMEVLETENLREHALDVGNQLHTPKKE 222
+ TY +P+ A A +++L+ NL +A +VG L+ E
Sbjct: 323 GHGWTYSAHPIGAAAGVANLKLLDELNLVSNAGEVGAYLNATXAE 367
Score = 28.5 bits (62), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 1 MARYPLIGDVRGIGLFVGVELVTCRKQKT 29
++++ +GDVRG GL VE V R +T
Sbjct: 369 LSQHANVGDVRGEGLLCAVEFVKDRDSRT 397
>pdb|2JJE|A Chain A, Crystal Structure Of T330s Mutant Of Rv3290c From M.
Tuberculosis
Length = 449
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 46/106 (43%), Gaps = 4/106 (3%)
Query: 117 VYKHVQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNGHPVAAVITTKEIAKSFQETG 176
++ VQ G G GT W QL D+ PDIV GK V A E+A +
Sbjct: 269 IFDEVQTGCGLTGTAWAYQQL---DVAPDIVAFGKKT-QVCGVMAGRRVDEVADNVFAVP 324
Query: 177 VEYFNTYGGNPVSCAVANAVMEVLETENLREHALDVGNQLHTPKKE 222
+++GGN A ++EV+E E L E A+ G L E
Sbjct: 325 SRLNSSWGGNLTDMVRARRILEVIEAEGLFERAVQHGKYLRARLDE 370
>pdb|1MGV|A Chain A, Crystal Structure Of The R391a Mutant Of
7,8-Diaminopelargonic Acid Synthase
pdb|1MGV|B Chain B, Crystal Structure Of The R391a Mutant Of
7,8-Diaminopelargonic Acid Synthase
Length = 429
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 57/104 (54%), Gaps = 7/104 (6%)
Query: 117 VYKHVQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNG-HPVAAVITTKEIAKSFQET 175
+ + GFGR G F + +I PDI+ +GK + G ++A +TT+E+A++
Sbjct: 243 IADEIATGFGRTGK---LFACEHAEIAPDILCLGKALTGGTMTLSATLTTREVAETISNG 299
Query: 176 GVEYFN---TYGGNPVSCAVANAVMEVLETENLREHALDVGNQL 216
F T+ GNP++CA ANA + +LE+ + ++ D+ QL
Sbjct: 300 EAGCFMHGPTFMGNPLACAAANASLAILESGDWQQQVADIEVQL 343
>pdb|1QJ3|A Chain A, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
In Complex With 7-Keto-8-Aminopelargonic Acid
pdb|1QJ3|B Chain B, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
In Complex With 7-Keto-8-Aminopelargonic Acid
pdb|1QJ5|A Chain A, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
pdb|1QJ5|B Chain B, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
pdb|1MLY|A Chain A, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
In Complex With The Cis Isomer Of Amiclenomycin
pdb|1MLY|B Chain B, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
In Complex With The Cis Isomer Of Amiclenomycin
pdb|1MLZ|A Chain A, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
In Complex With The Trans-Isomer Of Amiclenomycin.
pdb|1MLZ|B Chain B, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
In Complex With The Trans-Isomer Of Amiclenomycin
Length = 429
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 57/104 (54%), Gaps = 7/104 (6%)
Query: 117 VYKHVQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNG-HPVAAVITTKEIAKSFQET 175
+ + GFGR G F + +I PDI+ +GK + G ++A +TT+E+A++
Sbjct: 243 IADEIATGFGRTGK---LFACEHAEIAPDILCLGKALTGGTMTLSATLTTREVAETISNG 299
Query: 176 GVEYFN---TYGGNPVSCAVANAVMEVLETENLREHALDVGNQL 216
F T+ GNP++CA ANA + +LE+ + ++ D+ QL
Sbjct: 300 EAGCFMHGPTFMGNPLACAAANASLAILESGDWQQQVADIEVQL 343
>pdb|1S09|A Chain A, Crystal Structure Of The Y144f Mutant Of 7,8-
Diaminopelargonic Acid Synthase
pdb|1S09|B Chain B, Crystal Structure Of The Y144f Mutant Of 7,8-
Diaminopelargonic Acid Synthase
Length = 429
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 56/104 (53%), Gaps = 7/104 (6%)
Query: 117 VYKHVQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNG-HPVAAVITTKEIAKSFQET 175
+ + GFGR G F + +I PDI+ +G + G ++A +TT+E+A++
Sbjct: 243 IADEIATGFGRTGK---LFACEHAEIAPDILCLGXALTGGTMTLSATLTTREVAETISNG 299
Query: 176 GVEYFN---TYGGNPVSCAVANAVMEVLETENLREHALDVGNQL 216
F T+ GNP++CA ANA + +LE+ + ++ D+ QL
Sbjct: 300 EAGCFMHGPTFMGNPLACAAANASLAILESGDWQQQVADIEVQL 343
>pdb|1S0A|A Chain A, Crystal Structure Of The Y17f Mutant Of 7,8-
Diaminopelargonic Acid Synthase
pdb|1S0A|B Chain B, Crystal Structure Of The Y17f Mutant Of 7,8-
Diaminopelargonic Acid Synthase
Length = 429
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 56/104 (53%), Gaps = 7/104 (6%)
Query: 117 VYKHVQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNG-HPVAAVITTKEIAKSFQET 175
+ + GFGR G F + +I PDI+ +G + G ++A +TT+E+A++
Sbjct: 243 IADEIATGFGRTGK---LFACEHAEIAPDILCLGXALTGGTMTLSATLTTREVAETISNG 299
Query: 176 GVEYFN---TYGGNPVSCAVANAVMEVLETENLREHALDVGNQL 216
F T+ GNP++CA ANA + +LE+ + ++ D+ QL
Sbjct: 300 EAGCFMHGPTFMGNPLACAAANASLAILESGDWQQQVADIEVQL 343
>pdb|1S08|A Chain A, Crystal Structure Of The D147n Mutant Of 7,8-
Diaminopelargonic Acid Synthase
pdb|1S08|B Chain B, Crystal Structure Of The D147n Mutant Of 7,8-
Diaminopelargonic Acid Synthase
Length = 429
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 56/104 (53%), Gaps = 7/104 (6%)
Query: 117 VYKHVQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNG-HPVAAVITTKEIAKSFQET 175
+ + GFGR G F + +I PDI+ +G + G ++A +TT+E+A++
Sbjct: 243 IADEIATGFGRTGK---LFACEHAEIAPDILCLGXALTGGTMTLSATLTTREVAETISNG 299
Query: 176 GVEYFN---TYGGNPVSCAVANAVMEVLETENLREHALDVGNQL 216
F T+ GNP++CA ANA + +LE+ + ++ D+ QL
Sbjct: 300 EAGCFMHGPTFMGNPLACAAANASLAILESGDWQQQVADIEVQL 343
>pdb|1S07|A Chain A, Crystal Structure Of The R253a Mutant Of
7,8-Diaminopelargonic Acid Synthase
pdb|1S07|B Chain B, Crystal Structure Of The R253a Mutant Of
7,8-Diaminopelargonic Acid Synthase
Length = 429
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 56/104 (53%), Gaps = 7/104 (6%)
Query: 117 VYKHVQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNG-HPVAAVITTKEIAKSFQET 175
+ + GFG G F + +I PDI+ +GK + G ++A +TT+E+A++
Sbjct: 243 IADEIATGFGATGK---LFACEHAEIAPDILCLGKALTGGTMTLSATLTTREVAETISNG 299
Query: 176 GVEYFN---TYGGNPVSCAVANAVMEVLETENLREHALDVGNQL 216
F T+ GNP++CA ANA + +LE+ + ++ D+ QL
Sbjct: 300 EAGCFMHGPTFMGNPLACAAANASLAILESGDWQQQVADIEVQL 343
>pdb|2EPJ|A Chain A, Crystal Structure Of Glutamate-1-Semialdehyde
2,1-Aminomutase From Aeropyrum Pernix
pdb|2ZSL|A Chain A, Crystal Structure Of Glutamate-1-Semialdehyde 2,1-
Aminomutase From Aeropyrum Pernix
pdb|2ZSM|A Chain A, Crystal Structure Of Glutamate-1-semialdehyde 2,1-
Aminomutase From Aeropyrum Pernix, Hexagonal Form
pdb|2ZSM|B Chain B, Crystal Structure Of Glutamate-1-semialdehyde 2,1-
Aminomutase From Aeropyrum Pernix, Hexagonal Form
pdb|2ZSM|C Chain C, Crystal Structure Of Glutamate-1-semialdehyde 2,1-
Aminomutase From Aeropyrum Pernix, Hexagonal Form
Length = 434
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 61/144 (42%), Gaps = 23/144 (15%)
Query: 76 QDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYL-------RE-----VYKHVQV 123
DV+ L G R E + + G I P +L RE + V
Sbjct: 188 NDVEALERVFAEYGDRIAGVIVEPVIANAGVIPPRREFLAALQRLSRESGALLILDEVVT 247
Query: 124 GF--GRVGTHWWAFQLQGDDIIPDIVTVGKPMGNGHPVAAVITTKEIAKSFQETGVEYFN 181
GF G G + F ++GD I+ +GK +G G PV AV ++E+ G + FN
Sbjct: 248 GFRLGLEGAQGY-FNIEGD-----IIVLGKIIGGGFPVGAVAGSREVMSLLTPQG-KVFN 300
Query: 182 --TYGGNPVSCAVANAVMEVLETE 203
T+ +P++ A A ++ LE E
Sbjct: 301 AGTFNAHPITMAAGLATLKALEEE 324
>pdb|1S06|A Chain A, Crystal Structure Of The R253k Mutant Of 7,8-
Diaminopelargonic Acid Synthase
pdb|1S06|B Chain B, Crystal Structure Of The R253k Mutant Of 7,8-
Diaminopelargonic Acid Synthase
Length = 429
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 56/104 (53%), Gaps = 7/104 (6%)
Query: 117 VYKHVQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNG-HPVAAVITTKEIAKSFQET 175
+ + GFG+ G F + +I PDI+ +G + G ++A +TT+E+A++
Sbjct: 243 IADEIATGFGKTGK---LFACEHAEIAPDILCLGXALTGGTMTLSATLTTREVAETISNG 299
Query: 176 GVEYFN---TYGGNPVSCAVANAVMEVLETENLREHALDVGNQL 216
F T+ GNP++CA ANA + +LE+ + ++ D+ QL
Sbjct: 300 EAGCFMHGPTFMGNPLACAAANASLAILESGDWQQQVADIEVQL 343
>pdb|4E77|A Chain A, 2.0a Crystal Structure Of A Glutamate-1-Semialdehyde
Aminotransferase From Yersinia Pestis Co92
Length = 429
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 42/88 (47%), Gaps = 6/88 (6%)
Query: 142 IIPDIVTVGKPMGNGHPVAAVITTKEIAKSFQETGVEY-FNTYGGNPVSCAVANAVMEVL 200
+IPD+ +GK +G G PV A +E+ + TG Y T GNP++ A A + +
Sbjct: 259 VIPDLTCLGKIIGGGXPVGAFGGRREVXNALAPTGPVYQAGTLSGNPIAXAAGFACLTEI 318
Query: 201 ETENLREHALDVGNQL-----HTPKKEN 223
+ E ++ + L H K+EN
Sbjct: 319 SQVGVYETLTELTDSLATGLRHAAKEEN 346
>pdb|3GJU|A Chain A, Crystal Structure Of A Putative Aminotransferase (Mll7127)
From Mesorhizobium Loti Maff303099 At 1.55 A Resolution
Length = 459
Score = 40.4 bits (93), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 49/192 (25%), Positives = 82/192 (42%), Gaps = 29/192 (15%)
Query: 41 RPPVRMSTEAPCPDVYRGKYPADKYPDEDLGVKYAQDVQDLIEAMGRNGKRPCAFFAESL 100
R PV + TEAP Y + +E A +++ I A G + AF E +
Sbjct: 178 RAPV-LHTEAP----YYFRRTDRSXSEEQFSQHCADKLEEXILAEGP--ETIAAFIGEPI 230
Query: 101 QSCGGQIIPPANYLRE------------VYKHVQVGFGRVGTHWWAFQLQGDDIIPDIVT 148
GG + PPA Y + V V GFGR+GT F I PD++T
Sbjct: 231 LGTGGIVPPPAGYWEKIQAVLKKYDVLLVADEVVTGFGRLGT---XFGSDHYGIKPDLIT 287
Query: 149 VG-KPMGNGH-PVAAVITTKEIAK-----SFQETGVEYFNTYGGNPVSCAVANAVMEVLE 201
+ K + + + P++ VI + + S + + + TY +P+ A A +E+++
Sbjct: 288 IAXKGLTSAYAPLSGVIVADRVWQVLVQGSDKLGSLGHGWTYSAHPICVAAGVANLELID 347
Query: 202 TENLREHALDVG 213
+L +A + G
Sbjct: 348 EXDLVTNAGETG 359
>pdb|2CFB|A Chain A, Glutamate-1-Semialdehyde 2,1-Aminomutase From
Thermosynechococcus Elongatus
Length = 411
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Query: 142 IIPDIVTVGKPMGNGHPVAAVITTKEIAKSFQETGVEY-FNTYGGNPVSCAVANAVMEVL 200
+ PD+ T+GK +G G PV A EI K G Y T GNP++ +E+L
Sbjct: 242 VTPDLTTLGKVIGGGLPVGAYGGRAEIMKMVAPAGPVYQAGTLSGNPLAMTAGIKTLEIL 301
Query: 201 ETENLREH 208
EH
Sbjct: 302 SRPGSYEH 309
>pdb|3FQ7|A Chain A, Gabaculine Complex Of Gsam
pdb|3FQ7|B Chain B, Gabaculine Complex Of Gsam
pdb|3USF|A Chain A, Crystal Structure Of Dava-4
pdb|3USF|B Chain B, Crystal Structure Of Dava-4
Length = 427
Score = 35.8 bits (81), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 54/125 (43%), Gaps = 17/125 (13%)
Query: 105 GQIIPPANYL---RE---------VYKHVQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKP 152
G I+P A +L RE V+ V GF R+ + Q + + PD+ T+GK
Sbjct: 213 GFIVPDAGFLEGLREITLEHDALLVFDEVMTGF-RIA--YGGVQ-EKFGVTPDLTTLGKI 268
Query: 153 MGNGHPVAAVITTKEIAKSFQETGVEY-FNTYGGNPVSCAVANAVMEVLETENLREHALD 211
+G G PV A +EI + G Y T GNP++ +E+L E+
Sbjct: 269 IGGGLPVGAYGGKREIMQLVAPAGPMYQAGTLSGNPLAMTAGIKTLELLRQPGTYEYLDQ 328
Query: 212 VGNQL 216
+ +L
Sbjct: 329 ITKRL 333
>pdb|2GSA|A Chain A, Crystal Structure Of Glutamate-1-Semialdehyde Aminomutase
(Aminotransferase, Wild-Type Form)
pdb|2GSA|B Chain B, Crystal Structure Of Glutamate-1-Semialdehyde Aminomutase
(Aminotransferase, Wild-Type Form)
pdb|4GSA|A Chain A, Crystal Structure Of Glutamate-1-semialdehyde Aminomutase
(aminotransferase) Reduced With Cyanoborohydrate
pdb|4GSA|B Chain B, Crystal Structure Of Glutamate-1-semialdehyde Aminomutase
(aminotransferase) Reduced With Cyanoborohydrate
pdb|3GSB|A Chain A, Crystal Structure Of Glutamate-1-Semialdehyde Aminomutase
In Complex With Gabaculine
pdb|3GSB|B Chain B, Crystal Structure Of Glutamate-1-Semialdehyde Aminomutase
In Complex With Gabaculine
Length = 432
Score = 35.8 bits (81), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 54/125 (43%), Gaps = 17/125 (13%)
Query: 105 GQIIPPANYL---RE---------VYKHVQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKP 152
G I+P A +L RE V+ V GF R+ + Q + + PD+ T+GK
Sbjct: 218 GFIVPDAGFLEGLREITLEHDALLVFDEVMTGF-RIA--YGGVQ-EKFGVTPDLTTLGKI 273
Query: 153 MGNGHPVAAVITTKEIAKSFQETGVEY-FNTYGGNPVSCAVANAVMEVLETENLREHALD 211
+G G PV A +EI + G Y T GNP++ +E+L E+
Sbjct: 274 IGGGLPVGAYGGKREIMQLVAPAGPMYQAGTLSGNPLAMTAGIKTLELLRQPGTYEYLDQ 333
Query: 212 VGNQL 216
+ +L
Sbjct: 334 ITKRL 338
>pdb|2HOY|A Chain A, Inter-Subunit Signaling In Gsam
pdb|2HOY|B Chain B, Inter-Subunit Signaling In Gsam
pdb|2HOZ|A Chain A, Inter-Subunit Signaling In Gsam
pdb|2HOZ|B Chain B, Inter-Subunit Signaling In Gsam
pdb|2HP1|A Chain A, Inter-Subunit Signaling In Gsam
pdb|2HP1|B Chain B, Inter-Subunit Signaling In Gsam
pdb|2HP2|A Chain A, Inter-Subunit Signaling In Gsam
pdb|2HP2|B Chain B, Inter-Subunit Signaling In Gsam
Length = 432
Score = 35.8 bits (81), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 54/125 (43%), Gaps = 17/125 (13%)
Query: 105 GQIIPPANYL---RE---------VYKHVQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKP 152
G I+P A +L RE V+ V GF R+ + Q + + PD+ T+GK
Sbjct: 218 GFIVPDAGFLEGLREITLEHDALLVFDEVMTGF-RIA--YGGVQ-EKFGVTPDLTTLGKI 273
Query: 153 MGNGHPVAAVITTKEIAKSFQETGVEY-FNTYGGNPVSCAVANAVMEVLETENLREHALD 211
+G G PV A +EI + G Y T GNP++ +E+L E+
Sbjct: 274 IGGGLPVGAYGGKREIMQLVAPAGPMYQAGTLSGNPLAMTAGIKTLELLRQPGTYEYLDQ 333
Query: 212 VGNQL 216
+ +L
Sbjct: 334 ITKRL 338
>pdb|3FQA|A Chain A, Gabaculien Complex Of Gabaculine Resistant Gsam Version
pdb|3FQA|B Chain B, Gabaculien Complex Of Gabaculine Resistant Gsam Version
Length = 427
Score = 35.4 bits (80), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
Query: 142 IIPDIVTVGKPMGNGHPVAAVITTKEIAKSFQETGVEY-FNTYGGNPVSCAVANAVMEVL 200
+ PD+ T+GK +G G PV A +EI + G Y T GNP++ +E+L
Sbjct: 258 VTPDLTTLGKIIGGGLPVGAYGGKREIMQLVAPAGPMYQAGTLSGNPLAMTAGIKTLELL 317
Query: 201 ETENLREHALDVGNQL 216
E+ + +L
Sbjct: 318 RQPGTYEYLDQITKRL 333
>pdb|3FQ8|A Chain A, M248i Mutant Of Gsam
pdb|3FQ8|B Chain B, M248i Mutant Of Gsam
Length = 427
Score = 35.4 bits (80), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
Query: 142 IIPDIVTVGKPMGNGHPVAAVITTKEIAKSFQETGVEY-FNTYGGNPVSCAVANAVMEVL 200
+ PD+ T+GK +G G PV A +EI + G Y T GNP++ +E+L
Sbjct: 258 VTPDLTTLGKIIGGGLPVGAYGGKREIMQLVAPAGPMYQAGTLSGNPLAMTAGIKTLELL 317
Query: 201 ETENLREHALDVGNQL 216
E+ + +L
Sbjct: 318 RQPGTYEYLDQITKRL 333
>pdb|3K28|A Chain A, Crystal Structure Of A Glutamate-1-Semialdehyde
Aminotransferase From Bacillus Anthracis With Bound
Pyridoxal 5'phosphate
pdb|3K28|B Chain B, Crystal Structure Of A Glutamate-1-Semialdehyde
Aminotransferase From Bacillus Anthracis With Bound
Pyridoxal 5'phosphate
pdb|3K28|C Chain C, Crystal Structure Of A Glutamate-1-Semialdehyde
Aminotransferase From Bacillus Anthracis With Bound
Pyridoxal 5'phosphate
pdb|3K28|D Chain D, Crystal Structure Of A Glutamate-1-Semialdehyde
Aminotransferase From Bacillus Anthracis With Bound
Pyridoxal 5'phosphate
Length = 429
Score = 32.0 bits (71), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Query: 142 IIPDIVTVGKPMGNGHPVAAVITTKEIAKSFQETGVEY-FNTYGGNPVSCAVANAVMEVL 200
+ PD+ +GK +G G PV A EI + +G Y T GNP++ A + L
Sbjct: 259 VTPDLTCLGKVIGGGLPVGAYGGKAEIXRQVAPSGPIYQAGTLSGNPLAXAAGYETLVQL 318
Query: 201 ETENLRE 207
E+ E
Sbjct: 319 TPESYVE 325
>pdb|3BS8|A Chain A, Crystal Structure Of Glutamate 1-Semialdehyde
Aminotransferase Complexed With
Pyridoxamine-5'-Phosphate From Bacillus Subtilis
Length = 438
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Query: 142 IIPDIVTVGKPMGNGHPVAAVITTKEIAKSFQETGVEY-FNTYGGNPVSCAVANAVMEVL 200
+ PD+ +GK +G G PV A EI + +G Y T GNP++ ++ L
Sbjct: 267 VTPDLTCLGKVIGGGLPVGAYGGKAEIMEQIAPSGPIYQAGTLSGNPLAMTAGLETLKQL 326
Query: 201 ETENLR 206
++ +
Sbjct: 327 TPDSYK 332
>pdb|1B1Y|A Chain A, Sevenfold Mutant Of Barley Beta-Amylase
Length = 500
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Query: 85 MGRNGKRPCAFFAESLQSCGGQIIPPANYLREVYKHVQVGFGRVGTHWW 133
+ G+ A+++ +L G +I+ AN + YK VQ+ G HWW
Sbjct: 249 LSEKGRFFLAWYSNNLIKHGDRILDEANKVFLGYK-VQLAIKIAGVHWW 296
>pdb|1T77|A Chain A, Crystal Structure Of The Ph-Beach Domains Of Human LrbaBGL
pdb|1T77|B Chain B, Crystal Structure Of The Ph-Beach Domains Of Human LrbaBGL
pdb|1T77|C Chain C, Crystal Structure Of The Ph-Beach Domains Of Human LrbaBGL
pdb|1T77|D Chain D, Crystal Structure Of The Ph-Beach Domains Of Human LrbaBGL
Length = 414
Score = 28.9 bits (63), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 24/49 (48%)
Query: 65 YPDEDLGVKYAQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANY 113
Y E+L + + +DL + +G + AFFAE +S +P +Y
Sbjct: 178 YESEELDLTLPTNFRDLSKPIGALNPKRAAFFAERYESWEDDQVPKFHY 226
>pdb|3P8R|A Chain A, Crystal Structure Of Polyprenyl Synthase From Vibrio
Cholerae
Length = 302
Score = 28.9 bits (63), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Query: 133 WAFQLQGD--DIIPDIVTVGKPMGNGHPV 159
AFQ+Q D DII D T+GKP G+ +
Sbjct: 223 LAFQVQDDILDIISDTETLGKPQGSDQEL 251
>pdb|1KFI|A Chain A, Crystal Structure Of The Exocytosis-Sensitive
Phosphoprotein, Pp63PARAFUSIN (PHOSPHOGLUCOMUTASE) FROM
Paramecium
pdb|1KFI|B Chain B, Crystal Structure Of The Exocytosis-Sensitive
Phosphoprotein, Pp63PARAFUSIN (PHOSPHOGLUCOMUTASE) FROM
Paramecium
pdb|1KFQ|A Chain A, Crystal Structure Of Exocytosis-Sensitive Phosphoprotein,
Pp63PARAFUSIN (PHOSPHOGLUCOMUTSE) FROM PARAMECIUM. OPEN
Form
pdb|1KFQ|B Chain B, Crystal Structure Of Exocytosis-Sensitive Phosphoprotein,
Pp63PARAFUSIN (PHOSPHOGLUCOMUTSE) FROM PARAMECIUM. OPEN
Form
Length = 572
Score = 28.1 bits (61), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 163 ITTKEIAKSF-QETGVEYFNTYGGNPVSCAVANAVMEVLETENLREHALDVGNQ 215
+T +EI + Q+ G Y++ Y V A AN +ME L+T+ L GN+
Sbjct: 429 VTVEEIVTQYWQQFGRNYYSRYDYEQVDSAGANKMMEHLKTKFQYFEQLKQGNK 482
>pdb|2ATY|A Chain A, Complement Receptor Chimaeric Conjugate Cr2-Ig
pdb|2ATY|B Chain B, Complement Receptor Chimaeric Conjugate Cr2-Ig
Length = 376
Score = 27.3 bits (59), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 18/74 (24%), Positives = 31/74 (41%), Gaps = 5/74 (6%)
Query: 141 DIIPDIVTV-----GKPMGNGHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANA 195
D P+ +TV G+P N ++ T E + + V+ N GN +C+V +
Sbjct: 300 DFFPEDITVEWQWNGQPAENYKNTQPIMNTNESYFVYSKLNVQKSNWEAGNTFTCSVLHE 359
Query: 196 VMEVLETENLREHA 209
+ TE H+
Sbjct: 360 GLHNHHTEKSLSHS 373
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.137 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,449,979
Number of Sequences: 62578
Number of extensions: 335188
Number of successful extensions: 888
Number of sequences better than 100.0: 79
Number of HSP's better than 100.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 724
Number of HSP's gapped (non-prelim): 114
length of query: 224
length of database: 14,973,337
effective HSP length: 95
effective length of query: 129
effective length of database: 9,028,427
effective search space: 1164667083
effective search space used: 1164667083
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)