RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy6205
(224 letters)
>gnl|CDD|180426 PRK06148, PRK06148, hypothetical protein; Provisional.
Length = 1013
Score = 248 bits (635), Expect = 1e-76
Identities = 93/180 (51%), Positives = 124/180 (68%), Gaps = 18/180 (10%)
Query: 49 EAPCPDVYRGKYPADKYPDEDLGVKYAQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQII 108
A PD YRG ++PD + G ++A+ V + I AM G+ P F AES+ S GQI
Sbjct: 745 VAEVPDSYRGPE---RWPDAEHGRRFAESVAEQIAAMAAKGRGPAFFIAESIPSVAGQIF 801
Query: 109 PPANYLREVYKH------------VQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNG 156
P YLREVY VQVGFGRVG+HWWAF+ QG ++PDIVT+GKP+GNG
Sbjct: 802 LPEGYLREVYAMVRAAGGVCIADEVQVGFGRVGSHWWAFETQG--VVPDIVTMGKPIGNG 859
Query: 157 HPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLETENLREHALDVGNQL 216
HP+ AV+TT+EIA SF + G+EYFNT+GGNPVSCA+ AV++++E E+L+ +AL++GN L
Sbjct: 860 HPMGAVVTTREIADSF-DNGMEYFNTFGGNPVSCAIGLAVLDIIEDEDLQRNALEIGNYL 918
Score = 67.4 bits (165), Expect = 5e-13
Identities = 27/53 (50%), Positives = 36/53 (67%), Gaps = 3/53 (5%)
Query: 2 ARYPLIGDVRGIGLFVGVELVTCRKQKTPATSEAQHVITRPPVR---MSTEAP 51
R+ +IGDVRG+GLF+G+ELVT RK K PAT+ A++V R + TE P
Sbjct: 927 DRFDIIGDVRGMGLFLGIELVTDRKTKAPATAIARYVKNGARERGILIGTEGP 979
>gnl|CDD|99735 cd00610, OAT_like, Acetyl ornithine aminotransferase family. This
family belongs to pyridoxal phosphate (PLP)-dependent
aspartate aminotransferase superfamily (fold I). The
major groups in this CD correspond to ornithine
aminotransferase, acetylornithine aminotransferase,
alanine-glyoxylate aminotransferase, dialkylglycine
decarboxylase, 4-aminobutyrate aminotransferase,
beta-alanine-pyruvate aminotransferase,
adenosylmethionine-8-amino-7-oxononanoate
aminotransferase, and glutamate-1-semialdehyde
2,1-aminomutase. All the enzymes belonging to this
family act on basic amino acids and their derivatives
are involved in transamination or decarboxylation.
Length = 413
Score = 183 bits (468), Expect = 2e-56
Identities = 64/176 (36%), Positives = 90/176 (51%), Gaps = 19/176 (10%)
Query: 53 PDVYRGKYPADKYPDEDLGVKYAQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPAN 112
P V YP P + A D++ L EA+ + + A E +Q GG I+PP
Sbjct: 157 PGVLHVPYPYRYRPPAE----LADDLEALEEALEEHPEEVAAVIVEPIQGEGGVIVPPPG 212
Query: 113 YLREVY----KH--------VQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNGHPVA 160
YL+ + KH VQ GFGR G + + PDIVT+GK +G G P+
Sbjct: 213 YLKALRELCRKHGILLIADEVQTGFGRTGKMFAFEH---FGVEPDIVTLGKGLGGGLPLG 269
Query: 161 AVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLETENLREHALDVGNQL 216
AV+ +EI +F + T+GGNP++CA A AV+EVLE E L E+A ++G L
Sbjct: 270 AVLGREEIMDAFPAGPGLHGGTFGGNPLACAAALAVLEVLEEEGLLENAAELGEYL 325
Score = 47.6 bits (114), Expect = 2e-06
Identities = 18/38 (47%), Positives = 24/38 (63%)
Query: 2 ARYPLIGDVRGIGLFVGVELVTCRKQKTPATSEAQHVI 39
++PL+GDVRG GL +G+ELV R K P A +I
Sbjct: 334 EKHPLVGDVRGRGLMIGIELVKDRATKPPDKELAAKII 371
>gnl|CDD|223238 COG0160, GabT, 4-aminobutyrate aminotransferase and related
aminotransferases [Amino acid transport and metabolism].
Length = 447
Score = 170 bits (434), Expect = 5e-51
Identities = 59/179 (32%), Positives = 89/179 (49%), Gaps = 21/179 (11%)
Query: 50 APCPDVYRGKYPADKYPDEDLGVKYAQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIP 109
P P+ YR + E+ G + ++ + + + A E +Q GG I+P
Sbjct: 184 VPYPNPYRCPFGIG---GEECGDDALEYIERALFDLEVGPEEVAAIIIEPIQGEGGIIVP 240
Query: 110 PANYLREVYKH------------VQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNGH 157
P +L+ + K VQ GFGR G +AF+ G + PDIVT+ K +G G
Sbjct: 241 PKGFLKALRKLCREHGILLIADEVQTGFGRTG-KMFAFEHFG--VEPDIVTLAKSLGGGL 297
Query: 158 PVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLETENLREHALDVGNQL 216
P++AV+ EI + T+GGNPV+CA A AV++V+E ENL E A ++G L
Sbjct: 298 PLSAVVGRAEIMDWPPG---GHGGTFGGNPVACAAALAVLDVIEEENLLERAAELGEYL 353
Score = 59.9 bits (146), Expect = 1e-10
Identities = 20/41 (48%), Positives = 26/41 (63%)
Query: 1 MARYPLIGDVRGIGLFVGVELVTCRKQKTPATSEAQHVITR 41
++PLIGDVRG+GL +GVELV R K P A ++ R
Sbjct: 361 QEKHPLIGDVRGLGLMIGVELVKDRDTKEPDAELAAKIVAR 401
>gnl|CDD|235716 PRK06149, PRK06149, hypothetical protein; Provisional.
Length = 972
Score = 158 bits (402), Expect = 1e-44
Identities = 71/189 (37%), Positives = 107/189 (56%), Gaps = 22/189 (11%)
Query: 40 TRPPVRMSTEAPCPDVYRGKYPADKYPDEDLGVKYAQDVQDLIEAMGRNGKRPCAFFAES 99
TRP E+P + YRG++ D Y +DV +E + +G+ F E
Sbjct: 700 TRPDWVHPVESP--NTYRGRFRG-----ADSAADYVRDVVAQLEELDASGRGLAGFICEP 752
Query: 100 LQSCGGQIIPPANYLREVYK------------HVQVGFGRVGTHWWAFQLQGDDIIPDIV 147
+ G I P YL++VY VQVG+GR+G ++W F+ QG ++PDI+
Sbjct: 753 VYGNAGGIALPPGYLQQVYAAVRARGGVCIADEVQVGYGRLGHYFWGFEQQG--VVPDII 810
Query: 148 TVGKPMGNGHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLETENLRE 207
T+ K MGNGHP+ AVIT +EIA++ + G +F++ GG+PVSC + AV++VL E L+E
Sbjct: 811 TMAKGMGNGHPLGAVITRREIAEALEAEGY-FFSSTGGSPVSCRIGMAVLDVLREEKLQE 869
Query: 208 HALDVGNQL 216
+A VG+ L
Sbjct: 870 NARRVGDHL 878
Score = 45.4 bits (108), Expect = 1e-05
Identities = 19/35 (54%), Positives = 24/35 (68%)
Query: 1 MARYPLIGDVRGIGLFVGVELVTCRKQKTPATSEA 35
R+PLIG V G+GL++GVELV R+ PAT E
Sbjct: 886 ADRHPLIGAVHGMGLYLGVELVRDRQTLEPATEET 920
>gnl|CDD|235056 PRK02627, PRK02627, acetylornithine aminotransferase; Provisional.
Length = 396
Score = 125 bits (316), Expect = 4e-34
Identities = 53/159 (33%), Positives = 82/159 (51%), Gaps = 25/159 (15%)
Query: 72 VKYAQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVYKH----------- 120
V + D++ L A+ + A E +Q GG YL+ + +
Sbjct: 167 VPFN-DIEALKAAIT---DKTAAVMLEPIQGEGGVNPADKEYLQALRELCDENGILLILD 222
Query: 121 -VQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNGHPVAAVITTKEIAKSFQ--ETGV 177
VQ G GR G +A+Q G I PDI+T+ K +G G P+ AV+ +++A F + G
Sbjct: 223 EVQTGMGRTGK-LFAYQHYG--IEPDIMTLAKGLGGGVPIGAVLAKEKVADVFTPGDHG- 278
Query: 178 EYFNTYGGNPVSCAVANAVMEVLETENLREHALDVGNQL 216
+T+GGNP++CA A AV+E++E E L E+A +VG L
Sbjct: 279 ---STFGGNPLACAAALAVIEIIEEEGLLENAAEVGEYL 314
Score = 33.2 bits (77), Expect = 0.088
Identities = 11/20 (55%), Positives = 16/20 (80%)
Query: 2 ARYPLIGDVRGIGLFVGVEL 21
+YP I +VRG+GL +G+EL
Sbjct: 323 EKYPGIKEVRGLGLMIGIEL 342
>gnl|CDD|223239 COG0161, BioA, Adenosylmethionine-8-amino-7-oxononanoate
aminotransferase [Coenzyme metabolism].
Length = 449
Score = 125 bits (317), Expect = 6e-34
Identities = 57/198 (28%), Positives = 92/198 (46%), Gaps = 25/198 (12%)
Query: 37 HVITRPPVRMSTEAPCPDVYRGKYPADKYPDEDLGVKYAQDVQDLIEAMGRNGKRPCAFF 96
H P + P P YR + + ++ + A +++ LI G AF
Sbjct: 165 HAFYDPLLPEVLHLPAPYAYRRGFFGE---GDEEFAEAADELEALILEHGPE--TIAAFI 219
Query: 97 AESL-QSCGGQIIPPANYLREVY----KH--------VQVGFGRVGTHWWAFQLQGDDII 143
E + GG ++PP YL+ V K+ V GFGR G F + I+
Sbjct: 220 VEPVVGGAGGMLVPPPGYLKRVREICDKYGILLIADEVATGFGRTGK---MFACEHAGIV 276
Query: 144 PDIVTVGKPMGNGH-PVAAVITTKEIAKSFQETGVEYFN---TYGGNPVSCAVANAVMEV 199
PDI+ + K + G+ P++AV+T+ I ++F + F TY GNP++CA A A +++
Sbjct: 277 PDILCLAKGLTGGYLPLSAVLTSDRIYEAFSDGDAGAFMHGHTYSGNPLACAAALANLDI 336
Query: 200 LETENLREHALDVGNQLH 217
LE E+L E ++G L
Sbjct: 337 LEEEDLLERVAEIGAYLQ 354
Score = 39.1 bits (92), Expect = 0.001
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 10/51 (19%)
Query: 2 ARYPLIGDVRGIGLFVGVELVTCRKQKTPATSEA----------QHVITRP 42
A +PL+GDVRG+GL +ELV + KTP + + ++ RP
Sbjct: 362 ADHPLVGDVRGLGLIGAIELVADKATKTPFEARVGARVRAAALERGLLIRP 412
>gnl|CDD|227325 COG4992, ArgD, Ornithine/acetylornithine aminotransferase [Amino
acid transport and metabolism].
Length = 404
Score = 123 bits (311), Expect = 2e-33
Identities = 51/137 (37%), Positives = 77/137 (56%), Gaps = 17/137 (12%)
Query: 93 CAFFAESLQSCGGQIIPPANYLREVY----KH--------VQVGFGRVGTHWWAFQLQGD 140
A E +Q GG I P +L+ + +H VQ G GR G +A++ G
Sbjct: 186 AAVIVEPIQGEGGVIPAPPEFLKALRELCDEHGALLILDEVQTGLGRTG-KLFAYEHYG- 243
Query: 141 DIIPDIVTVGKPMGNGHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVL 200
+ PDI+T+ K +G G P+ A++ T+EIA +F T ++ +T+GGNP++CAVA AV+EVL
Sbjct: 244 -VEPDILTLAKALGGGFPIGAMLATEEIASAF--TPGDHGSTFGGNPLACAVALAVLEVL 300
Query: 201 ETENLREHALDVGNQLH 217
E L E+ + G L
Sbjct: 301 LEEGLLENVREKGEYLL 317
Score = 34.1 bits (79), Expect = 0.052
Identities = 12/21 (57%), Positives = 16/21 (76%)
Query: 2 ARYPLIGDVRGIGLFVGVELV 22
RYPL+ +VRG GL +G+EL
Sbjct: 325 RRYPLVKEVRGRGLMIGIELK 345
>gnl|CDD|201078 pfam00202, Aminotran_3, Aminotransferase class-III.
Length = 338
Score = 121 bits (306), Expect = 4e-33
Identities = 59/176 (33%), Positives = 92/176 (52%), Gaps = 21/176 (11%)
Query: 53 PDVYRGKYPADKYPDEDLGVKYAQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPAN 112
P VY YP + +E+L A + LI+A+ A E +Q GG + PP
Sbjct: 143 PGVYFLPYPDLEAAEEELAC--ADEALRLIKAVH--DDNIAAVIVEPIQGEGGVVPPPPG 198
Query: 113 YLREVY----KH--------VQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNGHPVA 160
+L + KH VQ GFGR G +A + + PDI+T+ K + G P++
Sbjct: 199 FLAGLREICKKHGVLLIADEVQTGFGRTGK-LFACE--HYGVTPDIMTLAKALTGGLPLS 255
Query: 161 AVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLETENLREHALDVGNQL 216
AV+ T EI ++F + T+GGNP++CA A AV++++E ENL ++A + G+ L
Sbjct: 256 AVLATAEIMQAFHPGS--HGGTFGGNPLACAAALAVLDIIEDENLLQNAQEKGDYL 309
Score = 29.6 bits (67), Expect = 1.2
Identities = 11/18 (61%), Positives = 15/18 (83%)
Query: 5 PLIGDVRGIGLFVGVELV 22
P+IGDVRG GL + +E+V
Sbjct: 320 PVIGDVRGKGLMIAIEIV 337
>gnl|CDD|235599 PRK05769, PRK05769, 4-aminobutyrate aminotransferase; Provisional.
Length = 441
Score = 104 bits (261), Expect = 4e-26
Identities = 50/136 (36%), Positives = 71/136 (52%), Gaps = 19/136 (13%)
Query: 94 AFFAESLQSCGGQIIPPANYLREV----YKH--------VQVGFGRVGTHWWAFQLQGDD 141
A E +Q GG ++PP N+ +E+ K+ VQ G GR G +A + G
Sbjct: 224 AIIVEPIQGEGGYVVPPKNFFKELRKLADKYGILLIDDEVQTGMGRTGK-MFAIEHFG-- 280
Query: 142 IIPDIVTVGKPMGNGHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLE 201
+ PDI+T+ K + G P+ AVI E+ F G + NT+GGNPV+ A A A +E LE
Sbjct: 281 VEPDIITLAKAIAGGLPLGAVIGRAELM--FLPPGS-HANTFGGNPVAAAAALATLEELE 337
Query: 202 TENLREHALDVGNQLH 217
E L E+A +G L
Sbjct: 338 -EGLLENAQKLGEYLR 352
Score = 46.4 bits (111), Expect = 4e-06
Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Query: 3 RYPLIGDVRGIGLFVGVELVTCRKQKTPATSEAQHVITR 41
+Y IGDVRG+GL +GVELV + +K P V+
Sbjct: 361 KYEFIGDVRGLGLMIGVELV--KDRKEPDPKLRDKVLYE 397
>gnl|CDD|233098 TIGR00707, argD, transaminase, acetylornithine/succinylornithine
family. This family of proteins, for which ornithine
aminotransferases form an outgroup, consists mostly of
proteins designated acetylornithine aminotransferase.
However, the two very closely related members from E.
coli are assigned different enzymatic activities. One is
acetylornithine aminotransferase (EC 2.6.1.11), ArgD, an
enzyme of arginine biosynthesis, while another is
succinylornithine aminotransferase, an enzyme of the
arginine succinyltransferase pathway, an
ammonia-generating pathway of arginine catabolism (See
MEDLINE:98361920). Members of this family may also act
on ornithine, like ornithine aminotransferase (EC
2.6.1.13) (see MEDLINE:90337349) and on
succinyldiaminopimelate, like
N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17,
DapC, an enzyme of lysine biosynthesis) (see
MEDLINE:99175097).
Length = 379
Score = 102 bits (256), Expect = 1e-25
Identities = 56/172 (32%), Positives = 89/172 (51%), Gaps = 24/172 (13%)
Query: 61 PADKYPDEDL--GVKYA--QDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYL-- 114
P + E L G YA D++ L +A+ A E +Q GG A +L
Sbjct: 139 PKYQKGFEPLVPGFSYAPYNDIESLKKAID---DETAAVIVEPIQGEGGVNPASAEFLKA 195
Query: 115 -RE---------VYKHVQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNGHPVAAVIT 164
RE ++ VQ G GR G ++A++ G I PDI+T+ K +G G P+ A +
Sbjct: 196 LREICKDKDALLIFDEVQTGIGRTG-KFFAYEHYG--IEPDIITLAKGLGGGVPIGATLA 252
Query: 165 TKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLETENLREHALDVGNQL 216
+E+A++F ++ +T+GGNP++CA A AV+EV+E E L E+ + G+
Sbjct: 253 KEEVAEAFTPG--DHGSTFGGNPLACAAALAVLEVIEKERLLENVKEKGDYF 302
>gnl|CDD|181401 PRK08360, PRK08360, 4-aminobutyrate aminotransferase; Provisional.
Length = 443
Score = 102 bits (256), Expect = 2e-25
Identities = 66/193 (34%), Positives = 91/193 (47%), Gaps = 43/193 (22%)
Query: 51 PCPDVYR---GKYPAD------KYPDEDL-GVKYAQDVQDLIEAMGRNGKRPCAFFAESL 100
P PD YR GK P +Y E G YA+ V A FAE +
Sbjct: 168 PYPDCYRCPFGKEPGSCKMECVEYIKEKFEGEVYAEGV--------------AALFAEPI 213
Query: 101 QSCGGQIIPPANYLREVYK------------HVQVGFGRVGTHWWAFQLQGDDIIPDIVT 148
Q G I+PP +Y +++ K VQ G GR G W F ++ + PDI+T
Sbjct: 214 QGDAGMIVPPEDYFKKLKKILDEHGILLVVDEVQSGLGRTGK--W-FAIEHFGVEPDIIT 270
Query: 149 VGKPMGNGHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLETENLREH 208
+GKP+G G P++A I EI S + T GNPV+ A A AV+E +E +NL +
Sbjct: 271 LGKPLGGGLPISATIGRAEIMDSLPPLAHAF--TLSGNPVASAAALAVIEEIEEKNLLKR 328
Query: 209 ALDVGNQLHTPKK 221
A +GN +T K+
Sbjct: 329 AEKLGN--YTKKR 339
Score = 50.9 bits (122), Expect = 1e-07
Identities = 21/41 (51%), Positives = 27/41 (65%)
Query: 1 MARYPLIGDVRGIGLFVGVELVTCRKQKTPATSEAQHVITR 41
++ LIGDVRGIGL +GV+LV R+ K A EA V+ R
Sbjct: 344 KKKHELIGDVRGIGLMIGVDLVKDRETKERAYEEAAKVVWR 384
>gnl|CDD|130940 TIGR01885, Orn_aminotrans, ornithine aminotransferase. This model
describes the final step in the biosynthesis of
ornithine from glutamate via the non-acetylated pathway.
Ornithine amino transferase takes L-glutamate
5-semialdehyde and makes it into ornithine, which is
used in the urea cycle, as well as in the biosynthesis
of arginine. This model includes low-GC bacteria and
eukaryotic species. The genes from two species are
annotated as putative acetylornithine aminotransferases
- one from Porphyromonas gingivalis (OMNI|PG1271), and
the other from Staphylococcus aureus (OMNI|SA0170).
After homology searching using BLAST it was determined
that these two sequences were most closely related to
ornithine aminotransferases. This model's seed includes
one characterized hit, from Bacillus subtilis
(SP|P38021).
Length = 401
Score = 100 bits (252), Expect = 4e-25
Identities = 62/188 (32%), Positives = 94/188 (50%), Gaps = 33/188 (17%)
Query: 44 VRMSTEAPCPDVYRGKYPADKYPDEDLGVKYAQDVQDLIEAMGRNGKRPCAFFAESLQSC 103
+ MST+ PD P Y + Y +++ L EA+ +G CAF E +Q
Sbjct: 146 ISMSTD---PDSRTNFGP---YVPGFKKIPY-NNLEALEEALEDHGPNVCAFIVEPIQGE 198
Query: 104 GGQIIPPANYLREVY----KH--------VQVGFGRVG----THWWAFQLQGDDIIPDIV 147
G ++P YL++V KH +Q G GR G +++ PDIV
Sbjct: 199 AGVVVPDDGYLKKVRELCTKHNVLLIADEIQTGLGRTGKLLCVDH-------ENVKPDIV 251
Query: 148 TVGKPMGNGH-PVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLETENLR 206
+GK + G PV+AV+ ++ + + G E+ +TYGGNP++CAVA A +EVLE E L
Sbjct: 252 LLGKALSGGVYPVSAVLADDDVMLTI-KPG-EHGSTYGGNPLACAVAVAALEVLEEEKLA 309
Query: 207 EHALDVGN 214
E+A +G
Sbjct: 310 ENAEKLGE 317
>gnl|CDD|235112 PRK03244, argD, acetylornithine aminotransferase; Provisional.
Length = 398
Score = 96.1 bits (240), Expect = 2e-23
Identities = 50/135 (37%), Positives = 69/135 (51%), Gaps = 17/135 (12%)
Query: 94 AFFAESLQSCGGQIIPPANYLRE------------VYKHVQVGFGRVGTHWWAFQLQGDD 141
A F E +Q G + PPA YL V VQ G GR G W+A Q G
Sbjct: 186 AVFLEPIQGEAGVVPPPAGYLAAAREITDRHGALLVLDEVQTGIGRTG-AWFAHQHDG-- 242
Query: 142 IIPDIVTVGKPMGNGHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLE 201
+ PD+VT+ K +G G P+ A + A T + +T+GGNPV+CA A AV++ +
Sbjct: 243 VTPDVVTLAKGLGGGLPIGACLAFGPAADLL--TPGLHGSTFGGNPVACAAALAVLDTIA 300
Query: 202 TENLREHALDVGNQL 216
+E L E+A +G QL
Sbjct: 301 SEGLLENAERLGEQL 315
Score = 28.3 bits (64), Expect = 3.0
Identities = 9/17 (52%), Positives = 12/17 (70%)
Query: 5 PLIGDVRGIGLFVGVEL 21
PL+ VRG GL +G+ L
Sbjct: 325 PLVDHVRGRGLLLGIVL 341
>gnl|CDD|181078 PRK07678, PRK07678, aminotransferase; Validated.
Length = 451
Score = 94.7 bits (236), Expect = 1e-22
Identities = 56/184 (30%), Positives = 92/184 (50%), Gaps = 25/184 (13%)
Query: 50 APCPDVYRGKYPADKYPDEDLGVKYAQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIP 109
P PD YR P + D ++ +++ ++ + A E + + GG ++P
Sbjct: 177 VPPPDCYRM--PGIESEDIY-DLECVKEIDRVMTWEL--SETIAAVIMEPIITGGGVLMP 231
Query: 110 PANYLREVY----KH--------VQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNGH 157
P +Y++ V KH V GFGR G AF + PDI+T+ K + + +
Sbjct: 232 PQDYMKAVKEICQKHGALLISDEVICGFGRTGK---AFGFMNYGVKPDIITMAKGITSAY 288
Query: 158 -PVAAVITTKEIAKSFQETG-VEYF---NTYGGNPVSCAVANAVMEVLETENLREHALDV 212
P++A KEI ++F+ G E+F NT+GGNP +CA+A +E++E ENL E + +
Sbjct: 289 LPLSATAVKKEIYEAFKGKGEYEHFRHVNTFGGNPAACALALKNLEIMENENLIERSAQL 348
Query: 213 GNQL 216
G L
Sbjct: 349 GELL 352
Score = 42.3 bits (100), Expect = 1e-04
Identities = 17/42 (40%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Query: 1 MARYPLIGDVRGIGLFVGVELVTCRKQKTPATSE-AQHVITR 41
+ +PL+GD+RG GL VG+ELV ++ K PA ++ V+
Sbjct: 360 LGEHPLVGDIRGKGLLVGIELVNDKETKEPADNDKVASVVAA 401
>gnl|CDD|215335 PLN02624, PLN02624, ornithine-delta-aminotransferase.
Length = 474
Score = 94.5 bits (235), Expect = 2e-22
Identities = 55/181 (30%), Positives = 87/181 (48%), Gaps = 30/181 (16%)
Query: 53 PDVYRGKYPADKYPDEDLGVKYAQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPAN 112
+ RG P L V + D+ L + +G R AF E +Q G +IPP
Sbjct: 190 NEATRGFGP---LLPGHLKVDFG-DLDALEKIFEEDGDRIAAFLFEPIQGEAGVVIPPDG 245
Query: 113 YLREVY----KH--------VQVGFGRVG----THWWAFQLQGDDIIPDIVTVGKPMGNG 156
YL+ V KH +Q G R G W +++ PD+V +GK +G G
Sbjct: 246 YLKAVRELCSKHNVLMIADEIQTGLARTGKMLACDW-------EEVRPDVVILGKALGGG 298
Query: 157 -HPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLETENLREHALDVGNQ 215
PV+AV+ K++ + E+ +T+GGNP++ AVA A ++V++ E L E + +G +
Sbjct: 299 VIPVSAVLADKDVMLCIKPG--EHGSTFGGNPLASAVAMAALQVVQDEKLAERSAKLGQE 356
Query: 216 L 216
L
Sbjct: 357 L 357
>gnl|CDD|233000 TIGR00508, bioA, adenosylmethionine-8-amino-7-oxononanoate
transaminase. All members of the seed alignment have
been demonstrated experimentally to act as EC 2.6.1.62,
an enzyme in the biotin biosynthetic pathway. Alternate
names include 7,8-diaminopelargonic acid
aminotransferase, DAPA aminotransferase, and
adenosylmethionine-8-amino-7-oxononanoate
aminotransferase. The gene symbol is bioA in E. coli and
BIO3 in S. cerevisiae [Biosynthesis of cofactors,
prosthetic groups, and carriers, Biotin].
Length = 417
Score = 93.7 bits (234), Expect = 2e-22
Identities = 55/187 (29%), Positives = 83/187 (44%), Gaps = 34/187 (18%)
Query: 50 APCPDVYRGKYPADKYPDEDLGVKYAQDVQDLIEAMGRNGKRPCAFFAESL-QSCGGQII 108
P P YR P D + ++ L+E + AF E L Q GG
Sbjct: 163 IPAPPCYRCWDPDDCEA------ECLAALEALLE---EHADEIAAFIVEPLVQGAGGMRF 213
Query: 109 PPANYLREVYK------------HVQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNG 156
P YLR++ + + GFGR G +A + + PDI+ + K + G
Sbjct: 214 YPPEYLRKLRELCDEYGVLLIADEIATGFGRTGK-LFACEH--AGVTPDILCLSKGLTGG 270
Query: 157 H-PVAAVITTKEIAKSF---QETGVEYF---NTYGGNPVSCAVANAVMEVLETENLREHA 209
+ P+AA +TT EI ++F E F +TY GNP++CA A A +++LE E+ E
Sbjct: 271 YLPLAATLTTDEIYEAFYSDDEGKA--FMHGHTYTGNPLACAAALASLDLLEEEDWLEQV 328
Query: 210 LDVGNQL 216
+ QL
Sbjct: 329 ARIEAQL 335
>gnl|CDD|180994 PRK07480, PRK07480, putative aminotransferase; Validated.
Length = 456
Score = 93.0 bits (232), Expect = 4e-22
Identities = 55/162 (33%), Positives = 80/162 (49%), Gaps = 22/162 (13%)
Query: 67 DEDLGVKYAQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVYK------- 119
E+ G+ A+ ++ I +G + AF E +Q GG IIPPA Y E+ +
Sbjct: 197 PEEFGLAAARQLEAKILELGAD--NVAAFIGEPIQGAGGVIIPPATYWPEIQRICRKYDI 254
Query: 120 -----HVQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNGH-PVAAVITTKEIAKSFQ 173
V GFGR G W+ Q G I PD++T+ K + +G+ P+ AV +A+
Sbjct: 255 LLVADEVICGFGRTG-EWFGSQHFG--IKPDLMTIAKGLTSGYIPMGAVGVGDRVAEVLI 311
Query: 174 ETGVEYFN---TYGGNPVSCAVANAVMEVLETENLREHALDV 212
E G E FN TY G+PV+ AVA A + +L E + E D
Sbjct: 312 EEGGE-FNHGFTYSGHPVAAAVALANLRILRDEGIVERVRDD 352
Score = 32.2 bits (74), Expect = 0.18
Identities = 12/35 (34%), Positives = 20/35 (57%)
Query: 2 ARYPLIGDVRGIGLFVGVELVTCRKQKTPATSEAQ 36
A +PL+G+VRG+GL +ELV + + +
Sbjct: 365 ADHPLVGEVRGVGLVGAIELVKDKATRERFEAGGG 399
>gnl|CDD|179933 PRK05093, argD, bifunctional
N-succinyldiaminopimelate-
aminotransferase/acetylornithine transaminase protein;
Reviewed.
Length = 403
Score = 92.7 bits (231), Expect = 5e-22
Identities = 45/122 (36%), Positives = 66/122 (54%), Gaps = 17/122 (13%)
Query: 93 CAFFAESLQSCGGQIIPPANYLREV----YKH--------VQVGFGRVGTHWWAFQLQGD 140
CA E +Q GG I +L+ + +H VQ G GR G +A+
Sbjct: 186 CAVVVEPIQGEGGVIPATPEFLQGLRELCDQHNALLIFDEVQTGMGRTG-DLFAYM--HY 242
Query: 141 DIIPDIVTVGKPMGNGHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVL 200
+ PDI+T K +G G P+ A++TT EIA F+ G + +TYGGNP++CAVA AV +++
Sbjct: 243 GVTPDILTSAKALGGGFPIGAMLTTAEIASHFK-VGT-HGSTYGGNPLACAVAEAVFDII 300
Query: 201 ET 202
T
Sbjct: 301 NT 302
Score = 27.2 bits (61), Expect = 6.8
Identities = 8/20 (40%), Positives = 14/20 (70%)
Query: 2 ARYPLIGDVRGIGLFVGVEL 21
+Y + ++RG+GL +G EL
Sbjct: 325 QKYGVFSEIRGMGLLIGAEL 344
>gnl|CDD|240281 PTZ00125, PTZ00125, ornithine aminotransferase-like protein;
Provisional.
Length = 400
Score = 92.1 bits (229), Expect = 7e-22
Identities = 50/158 (31%), Positives = 77/158 (48%), Gaps = 21/158 (13%)
Query: 72 VKYAQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVYK------------ 119
V Y DV+ L + + AF E +Q G I+P YL++VY+
Sbjct: 162 VDY-NDVEALEKLL--QDPNVAAFIVEPIQGEAGVIVPDDGYLKQVYELCKKYNVLLIVD 218
Query: 120 HVQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNGH-PVAAVITTKEIAKSFQETGVE 178
+Q G GR G + + PDIV +GK + G P++AV+ ++ + E
Sbjct: 219 EIQTGLGRTGKLLAH---DHEGVKPDIVLLGKALSGGLYPISAVLANDDVMLVIKPG--E 273
Query: 179 YFNTYGGNPVSCAVANAVMEVLETENLREHALDVGNQL 216
+ +TYGGNP++CAVA +EVL+ E L E+A +G
Sbjct: 274 HGSTYGGNPLACAVAVEALEVLKEEKLAENAQRLGEVF 311
>gnl|CDD|183175 PRK11522, PRK11522, putrescine--2-oxoglutarate aminotransferase;
Provisional.
Length = 459
Score = 91.0 bits (226), Expect = 3e-21
Identities = 47/155 (30%), Positives = 72/155 (46%), Gaps = 16/155 (10%)
Query: 75 AQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVYK------------HVQ 122
+ ++ + + G A E +Q GG I+PP YL V K VQ
Sbjct: 215 IEAMRTALSECKKTGDDVAAVILEPIQGEGGVILPPEGYLTAVRKLCDEFGALLILDEVQ 274
Query: 123 VGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNG-HPVAAVITTKEIAKSFQETGVEYFN 181
G GR G F + +++ PDI+ + K +G G P+ A I T+E+ + +
Sbjct: 275 TGMGRTGK---MFACEHENVQPDILCLAKALGGGVMPIGATIATEEVFSVLFDNPFLHTT 331
Query: 182 TYGGNPVSCAVANAVMEVLETENLREHALDVGNQL 216
T+GGNP++CA A A + VL +NL A G+ L
Sbjct: 332 TFGGNPLACAAALATINVLLEQNLPAQAEQKGDYL 366
>gnl|CDD|181234 PRK08117, PRK08117, 4-aminobutyrate aminotransferase; Provisional.
Length = 433
Score = 90.1 bits (224), Expect = 4e-21
Identities = 45/131 (34%), Positives = 75/131 (57%), Gaps = 17/131 (12%)
Query: 98 ESLQSCGGQIIPPANYLREV------------YKHVQVGFGRVGTHWWAFQLQGDDIIPD 145
E + GG I+PP ++L+++ + VQ GFGR G W F Q ++PD
Sbjct: 214 EPVLGEGGYIVPPKSFLKKLREICDRHGILLIFDEVQTGFGRTG-EW--FAAQTFGVVPD 270
Query: 146 IVTVGKPMGNGHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLETENL 205
I+T+ K + +G P++AV+ +KE+ + Q + T+GGNPV+CA A A +EV++ E L
Sbjct: 271 IMTIAKGIASGLPLSAVVASKELME--QWPLGSHGTTFGGNPVACAAALATLEVIKEEKL 328
Query: 206 REHALDVGNQL 216
++A ++G
Sbjct: 329 LDNANEMGAYA 339
Score = 40.4 bits (95), Expect = 5e-04
Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
Query: 2 ARYPLIGDVRGIGLFVGVELVTCRKQKTPA 31
++P+IGDVRGIGL +G+E+V P
Sbjct: 348 EKHPVIGDVRGIGLMIGIEIV--DPDGEPD 375
>gnl|CDD|235913 PRK07036, PRK07036, hypothetical protein; Provisional.
Length = 466
Score = 90.1 bits (224), Expect = 5e-21
Identities = 57/183 (31%), Positives = 86/183 (46%), Gaps = 31/183 (16%)
Query: 52 CPDVYRGKYPADKYPDE--DLGVKYAQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIP 109
P+ YR PA D V + +D I ++G AF AE + GG I+P
Sbjct: 186 SPNPYR--RPAGMSEAAFCDFLV---DEFEDKILSLG--ADNIAAFIAEPILGSGGVIVP 238
Query: 110 PANYLREVYK------------HVQVGFGRVGTHWWAFQ-LQGDDIIPDIVTVGKPMGNG 156
P Y + + V GFGR+G H++A + + G I PDI+T K + +G
Sbjct: 239 PPGYHARMREICRRYDILYISDEVVTGFGRLG-HFFASEAVFG--IQPDIITFAKGLTSG 295
Query: 157 H-PVAAVITTKEIAKSFQETGVE--YFN---TYGGNPVSCAVANAVMEVLETENLREHAL 210
+ P+ AVI ++ + + F TY G+PV+CA A +E++E E L EH
Sbjct: 296 YQPLGAVIISERLLDVISGPNAKGNVFTHGFTYSGHPVACAAALKNIEIMEREGLCEHVR 355
Query: 211 DVG 213
+VG
Sbjct: 356 EVG 358
Score = 29.3 bits (66), Expect = 1.6
Identities = 12/30 (40%), Positives = 15/30 (50%)
Query: 1 MARYPLIGDVRGIGLFVGVELVTCRKQKTP 30
+ PL+GDVRG L VE V + K
Sbjct: 368 LRELPLVGDVRGDHLMACVECVADKGSKAL 397
>gnl|CDD|181493 PRK08593, PRK08593, 4-aminobutyrate aminotransferase; Provisional.
Length = 445
Score = 88.2 bits (219), Expect = 2e-20
Identities = 40/129 (31%), Positives = 65/129 (50%), Gaps = 17/129 (13%)
Query: 98 ESLQSCGGQIIPPANYLREVYK------------HVQVGFGRVGTHWWAFQLQGDDIIPD 145
E++Q GG + P Y +YK +Q G GR G W + I PD
Sbjct: 214 ETIQGDGGLLEPVPGYFEALYKFCREHGILFAVDDIQQGLGRTGK-WSSISHFN--ITPD 270
Query: 146 IVTVGKPMGNGHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLETENL 205
+++ GK + G P++A++ KEI +S + + T G NPVSCA A A ++++E E+L
Sbjct: 271 LMSFGKSLAGGMPMSAIVGRKEIMESLEAPAHLF--TTGANPVSCAAALATIDMIEDESL 328
Query: 206 REHALDVGN 214
+ + + G
Sbjct: 329 LQRSAEKGE 337
Score = 45.1 bits (107), Expect = 1e-05
Identities = 14/40 (35%), Positives = 24/40 (60%)
Query: 2 ARYPLIGDVRGIGLFVGVELVTCRKQKTPATSEAQHVITR 41
++Y +GDVRG GL +G+++V+ +K KT A +
Sbjct: 348 SKYNFVGDVRGYGLSIGIDIVSDKKLKTRDNEAALKICNY 387
>gnl|CDD|179736 PRK04073, rocD, ornithine--oxo-acid transaminase; Provisional.
Length = 396
Score = 87.9 bits (218), Expect = 2e-20
Identities = 51/159 (32%), Positives = 78/159 (49%), Gaps = 21/159 (13%)
Query: 77 DVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVYK------------HVQVG 124
D++ L A+ N AF E +Q G IPP +L+ + +Q G
Sbjct: 175 DLEALKAAITPN---TAAFLVEPIQGEAGINIPPEGFLKAARELCKEENVLFIADEIQTG 231
Query: 125 FGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNG-HPVAAVITTKEIAKSFQETGVEYFNTY 183
GR G F D++ PD+ +GK +G G P++ V ++I F G + +T+
Sbjct: 232 LGRTGK---LFACDWDNVTPDMYILGKALGGGVFPISCVAANRDILGVF-TPG-SHGSTF 286
Query: 184 GGNPVSCAVANAVMEVLETENLREHALDVGNQLHTPKKE 222
GGNP++CAV+ A +EVLE E L E +L++G KE
Sbjct: 287 GGNPLACAVSIAALEVLEEEKLPERSLELGEYFKEQLKE 325
Score = 31.2 bits (71), Expect = 0.36
Identities = 12/17 (70%), Positives = 15/17 (88%)
Query: 5 PLIGDVRGIGLFVGVEL 21
P+I +VRG GLF+GVEL
Sbjct: 329 PMIKEVRGRGLFIGVEL 345
>gnl|CDD|132290 TIGR03246, arg_catab_astC, succinylornithine transaminase family.
Members of the seed alignment for this protein family
are the enzyme succinylornithine transaminase (EC
2.6.1.81), which catalyzes the third of five steps in
arginine succinyltransferase (AST) pathway, an
ammonia-releasing pathway of arginine degradation. All
seed alignment sequences are found within arginine
succinyltransferase operons, and all proteins that score
above 820.0 bits should function as succinylornithine
transaminase. However, a number of sequences extremely
closely related in sequence, found in different genomic
contexts, are likely to act in different biological
processes and may act on different substrates. This
model is desigated subfamily rather than equivalog,
pending further consideration, for this reason [Energy
metabolism, Amino acids and amines].
Length = 397
Score = 87.5 bits (217), Expect = 3e-20
Identities = 43/125 (34%), Positives = 65/125 (52%), Gaps = 17/125 (13%)
Query: 93 CAFFAESLQSCGGQIIPPANYLRE------------VYKHVQVGFGRVGTHWWAFQLQGD 140
CA E +Q GG + +L+ ++ VQ G GR G +A+ G
Sbjct: 181 CAVIVEPIQGEGGVVPADPAFLKGLRELCDRHNALLIFDEVQTGVGRTG-ELYAYMHYG- 238
Query: 141 DIIPDIVTVGKPMGNGHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVL 200
+ PDI+T K +G G P+ A++TT EIA + G + TYGGNP++CAVA V++++
Sbjct: 239 -VTPDILTSAKALGGGFPIGAMLTTTEIAAHLK-VGT-HGTTYGGNPLACAVAGKVLDLV 295
Query: 201 ETENL 205
T L
Sbjct: 296 NTPEL 300
>gnl|CDD|235656 PRK05964, PRK05964, adenosylmethionine--8-amino-7-oxononanoate
transaminase; Provisional.
Length = 423
Score = 85.6 bits (213), Expect = 1e-19
Identities = 46/173 (26%), Positives = 75/173 (43%), Gaps = 29/173 (16%)
Query: 53 PDVYRGKYPADKYPDEDLGVKYAQDVQDLIEAMGRNGKRPCAFFAESL-QSCGGQIIPPA 111
+ +P D Y L L + ++ AF E L Q GG +
Sbjct: 169 FEQVTAPFPPDGYEQATL--------DALEALLEKHAGEIAAFIVEPLVQGAGGMLFYDP 220
Query: 112 NYLREVY----KH--------VQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNGH-P 158
YL E+ +H + GFGR GT F + + PDI+ + K + G+ P
Sbjct: 221 RYLAELRRICDRHGVLLIFDEIATGFGRTGT---LFACEQAGVSPDIMCLSKGLTGGYLP 277
Query: 159 VAAVITTKEIAKSF--QETGVEYFN--TYGGNPVSCAVANAVMEVLETENLRE 207
+AA + T EI ++F + + + +Y NP++CA ANA +++ E E + E
Sbjct: 278 LAATLCTAEIFEAFYSDDRAKAFMHSPSYTANPLACAAANASLDLFEDEPVLE 330
>gnl|CDD|180746 PRK06916, PRK06916, adenosylmethionine--8-amino-7-oxononanoate
transaminase; Provisional.
Length = 460
Score = 84.8 bits (210), Expect = 4e-19
Identities = 61/207 (29%), Positives = 95/207 (45%), Gaps = 38/207 (18%)
Query: 37 HVITRPPVRMSTEAPCPDVYRGKYPADKYPDEDLGVKYAQDVQDLIEAMGRNGKRPCAFF 96
H + + + + P P YR Y DK ++ K+ +++++L++ + A
Sbjct: 175 HQVYSSLLFEAIKMPYPYTYRSPYGNDK---AEIVKKHLEELEELLKE---KHEEIAAII 228
Query: 97 AESL-QSCGGQIIPPANYLREVYK------------HVQVGFGRVGTHWWAFQLQGDDII 143
E L Q GG I P YL+ + V GFGR G F + +++
Sbjct: 229 VEPLVQGAGGMITMPKGYLKGLRNLCTKYNVLFITDEVATGFGRTGK---MFACEHENVT 285
Query: 144 PDIVTVGKPMGNGH-PVAAVITTKEIAKSF------QETGVEYFN--TYGGNPVSCAVAN 194
PDI+T GK + G+ P+A +TT EI +F Q+T +F+ +Y GNP+ CAVA
Sbjct: 286 PDIMTAGKGLTGGYLPIAITVTTDEIYNAFYGDYEEQKT---FFHGHSYTGNPLGCAVAL 342
Query: 195 AVMEVLETENLREH----ALDVGNQLH 217
A +E+ E NL E V QL
Sbjct: 343 ANLELYEKTNLIEQVARKTEYVATQLE 369
Score = 34.0 bits (78), Expect = 0.052
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 1 MARYPLIGDVRGIGLFVGVELVTCRKQKTP 30
+ +GD+R +GL VG+ELV ++ K P
Sbjct: 371 LFALKHVGDIRQLGLMVGIELVKNKETKEP 400
>gnl|CDD|179270 PRK01278, argD, acetylornithine transaminase protein; Provisional.
Length = 389
Score = 83.7 bits (208), Expect = 7e-19
Identities = 44/139 (31%), Positives = 65/139 (46%), Gaps = 23/139 (16%)
Query: 94 AFFAESLQSCGGQIIPPANYLRE------------VYKHVQVGFGRVGT---HWWAFQLQ 138
A E +Q GG P +L+ ++ VQ G GR G H WA
Sbjct: 178 AILIEPIQGEGGIRPAPDEFLKGLRQLCDENGLLLIFDEVQCGMGRTGKLFAHEWA---- 233
Query: 139 GDDIIPDIVTVGKPMGNGHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVME 198
+ PDI+ V K +G G P+ A + T+E AK T + +TYGGNP++ AV NAV++
Sbjct: 234 --GVTPDIMAVAKGIGGGFPLGACLATEEAAKGM--TPGTHGSTYGGNPLAMAVGNAVLD 289
Query: 199 VLETENLREHALDVGNQLH 217
V+ ++ +G L
Sbjct: 290 VILAPGFLDNVQRMGLYLK 308
Score = 30.2 bits (69), Expect = 0.88
Identities = 10/23 (43%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
Query: 2 ARYP-LIGDVRGIGLFVGVELVT 23
R+P +I +VRG GL +G++ V
Sbjct: 316 DRFPDVIEEVRGKGLLLGLKCVV 338
>gnl|CDD|235823 PRK06541, PRK06541, hypothetical protein; Provisional.
Length = 460
Score = 83.1 bits (206), Expect = 2e-18
Identities = 53/172 (30%), Positives = 82/172 (47%), Gaps = 28/172 (16%)
Query: 60 YPADKYPD--EDLGVKYAQDVQDLIEAMGRNGKRP---CAFFAESLQSCGGQIIPPANY- 113
Y A + D E G A +++ IE G P A F E +Q+ GG PP Y
Sbjct: 190 YRAPELGDDPEAFGRWAADRIEEAIEFEG-----PDTVAAVFLEPVQNAGGCFPPPPGYF 244
Query: 114 --LRE---------VYKHVQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNGH-PVAA 161
+RE V V FGR+G + + G +PDI+T K + +G+ P+ A
Sbjct: 245 ERVREICDRYDVLLVSDEVICAFGRLG-EMFGCERFG--YVPDIITCAKGITSGYSPLGA 301
Query: 162 VITTKEIAKSFQETGVEYFN--TYGGNPVSCAVANAVMEVLETENLREHALD 211
+I + + + F + + + T+GG+PVS AVA A +++ E E L +H D
Sbjct: 302 MIASDRLFEPFLDGPTMFLHGYTFGGHPVSAAVALANLDIFEREGLLDHVRD 353
Score = 36.9 bits (86), Expect = 0.006
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 5 PLIGDVRGIGLFVGVELVTCRKQKTPATSE 34
P++GDVRG G F G+ELV + K T +
Sbjct: 369 PIVGDVRGDGYFYGIELVKDKATKETFTDD 398
>gnl|CDD|235885 PRK06918, PRK06918, 4-aminobutyrate aminotransferase; Reviewed.
Length = 451
Score = 80.6 bits (199), Expect = 1e-17
Identities = 46/133 (34%), Positives = 75/133 (56%), Gaps = 21/133 (15%)
Query: 98 ESLQSCGGQIIPPANYLREVY----KH--------VQVGFGRVGTHWWAFQLQGDDIIPD 145
E +Q GG I+P +++EV +H +Q GF R G + F ++ D++PD
Sbjct: 226 EPVQGEGGFIVPSKKFVQEVRNICSEHGILFVADEIQTGFARTGKY---FAIEHFDVVPD 282
Query: 146 IVTVGKPMGNGHPVAAVITTKEI--AKSFQETGVEYFNTYGGNPVSCAVANAVMEVLETE 203
++TV K +G G P++ VI KEI + E G TY G+P+ CA A AV++++E E
Sbjct: 283 LITVSKSLGAGVPISGVIGRKEIMDESAPGELG----GTYAGSPLGCAAALAVLDIIEKE 338
Query: 204 NLREHALDVGNQL 216
NL + A+++G +
Sbjct: 339 NLNDRAIELGKVV 351
Score = 34.4 bits (79), Expect = 0.039
Identities = 15/38 (39%), Positives = 20/38 (52%)
Query: 3 RYPLIGDVRGIGLFVGVELVTCRKQKTPATSEAQHVIT 40
+Y IGDVRG+G ELV RK K P + ++
Sbjct: 361 KYNCIGDVRGLGAMCAFELVQDRKTKEPDKTLTANICK 398
>gnl|CDD|183999 PRK13360, PRK13360, omega amino acid--pyruvate transaminase;
Provisional.
Length = 442
Score = 80.2 bits (198), Expect = 1e-17
Identities = 46/137 (33%), Positives = 68/137 (49%), Gaps = 21/137 (15%)
Query: 94 AFFAESLQSCGGQIIPPANYL---RE---------VYKHVQVGFGRVGTHWWAFQLQGDD 141
A E + G +IPP YL RE ++ V GFGR+G F Q
Sbjct: 218 AVIVEPVAGSTGVLIPPKGYLQRLREICDKHGILLIFDEVITGFGRLGA---PFAAQYFG 274
Query: 142 IIPDIVTVGKPMGNGH-PVAAVITTKEIAKSFQ---ETGVEYFN--TYGGNPVSCAVANA 195
+ PD++T K + NG P+ AV + EI +F E G+E+F+ TY G+P++CA A A
Sbjct: 275 VTPDLLTCAKGLTNGAIPMGAVFVSSEIHDAFMQGPEAGIEFFHGYTYSGHPLACAAALA 334
Query: 196 VMEVLETENLREHALDV 212
+++ E E L A +
Sbjct: 335 TLDLYEREGLLTRAARL 351
>gnl|CDD|236032 PRK07495, PRK07495, 4-aminobutyrate aminotransferase; Provisional.
Length = 425
Score = 77.5 bits (191), Expect = 1e-16
Identities = 60/188 (31%), Positives = 91/188 (48%), Gaps = 24/188 (12%)
Query: 43 PVRMSTEAPCPDVYRGKYPADKYPDEDLGVKYAQDVQDL--IEAMGRNGKRPCAFFAESL 100
P ++ A PDVY +P + + GV Q + L + + +R A E +
Sbjct: 153 PYKVGFGAMMPDVYHVPFPVELH-----GVSVEQSLAALDKLFKADVDPQRVAAIIIEPV 207
Query: 101 QSCGGQIIPPANY---LREVY-KH--------VQVGFGRVGTHWWAFQLQGDDIIPDIVT 148
Q GG PA + LRE+ +H VQ GF R G F ++ ++ D+ T
Sbjct: 208 QGEGGFYPAPAAFMKALRELCDQHGILLIADEVQTGFARTGK---LFAMEHHEVAADLTT 264
Query: 149 VGKPMGNGHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLETENLREH 208
+ K + G P+AAV EI + G+ TYGGNP+ A A+AV++V+E E+L E
Sbjct: 265 MAKGLAGGFPLAAVTGRAEIMDAPGPGGLG--GTYGGNPLGIAAAHAVLDVIEEEDLCER 322
Query: 209 ALDVGNQL 216
A +GN+L
Sbjct: 323 ANQLGNRL 330
>gnl|CDD|181707 PRK09221, PRK09221, beta alanine--pyruvate transaminase;
Provisional.
Length = 445
Score = 77.2 bits (191), Expect = 1e-16
Identities = 51/159 (32%), Positives = 77/159 (48%), Gaps = 23/159 (14%)
Query: 71 GVKYAQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYL---REVY-KH------ 120
G + A D++ L+ A E + G ++PP YL RE+ KH
Sbjct: 200 GAELADDLERLVALHD--ASTIAAVIVEPMAGSAGVLVPPKGYLQRLREICDKHGILLIF 257
Query: 121 --VQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNGH-PVAAVITTKEIAKSFQ---E 174
V GFGR+G AF + + PDI+T K + NG P+ AVI + EI +F E
Sbjct: 258 DEVITGFGRLGA---AFAAERFGVTPDIITFAKGLTNGAIPMGAVIASDEIYDAFMQGPE 314
Query: 175 TGVEYFN--TYGGNPVSCAVANAVMEVLETENLREHALD 211
+E+F+ TY +PV+CA A +++ E+L E A +
Sbjct: 315 YAIEFFHGYTYSAHPVACAAGLATLDIYREEDLFERAAE 353
>gnl|CDD|168967 PRK07481, PRK07481, hypothetical protein; Provisional.
Length = 449
Score = 76.6 bits (189), Expect = 2e-16
Identities = 57/184 (30%), Positives = 92/184 (50%), Gaps = 25/184 (13%)
Query: 51 PCPDVYRGKYPADKYPDEDLGVKYAQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPP 110
P +YR + P+E L A+ ++ I G + AF AE +Q GG I+PP
Sbjct: 177 ETPWLYRNPFTEQD-PEE-LARICARLLEREIAFQGPD--TIAAFIAEPVQGAGGVIVPP 232
Query: 111 ANY---LREVY-KH--------VQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNGH- 157
AN+ +REV +H V GFGR G+ W+ + G + PDI+ + K + +G+
Sbjct: 233 ANFWPLVREVCDRHGILLIADEVVTGFGRTGS-WFGSRGWG--VKPDIMCLAKGITSGYV 289
Query: 158 PVAAVITTKEIAKSFQET-----GVEYFNTYGGNPVSCAVANAVMEVLETENLREHALDV 212
P+ A + IA +F+ + + TY G+PV+CA A A ++++ E+L +A
Sbjct: 290 PLGATMVNARIADAFEANADFGGAIMHGYTYSGHPVACAAALATLDIVVREDLPANAAKR 349
Query: 213 GNQL 216
G L
Sbjct: 350 GAYL 353
Score = 43.5 bits (103), Expect = 4e-05
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 2 ARYPLIGDVRGIGLFVGVELVTCRKQKTPA 31
R+ L+GDVRG GL + ++LV + + P
Sbjct: 362 ERFELVGDVRGKGLMLALDLVADKATREPI 391
>gnl|CDD|234848 PRK00854, rocD, ornithine--oxo-acid transaminase; Reviewed.
Length = 401
Score = 75.6 bits (186), Expect = 5e-16
Identities = 45/136 (33%), Positives = 71/136 (52%), Gaps = 18/136 (13%)
Query: 94 AFFAESLQSCGGQIIPPANYLREVYK------------HVQVGFGRVGTHWWAFQLQGDD 141
AF E +Q G IIPPA Y V + +Q G GR G A + +G
Sbjct: 190 AFLVEPIQGEAGVIIPPAGYFTRVRELCTANNVTLILDEIQTGLGRTGK-LLAEEHEG-- 246
Query: 142 IIPDIVTVGKPMGNG-HPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVL 200
I D+ +GK + G +PV+AV++ E+ + ++ +T+GGNP++CAVA A ++VL
Sbjct: 247 IEADVTLIGKALSGGFYPVSAVLSNSEVLGVLKPG--QHGSTFGGNPLACAVARAALKVL 304
Query: 201 ETENLREHALDVGNQL 216
E + E+A ++G
Sbjct: 305 TEEGMIENAAEMGAYF 320
>gnl|CDD|132415 TIGR03372, putres_am_tran, putrescine aminotransferase. Members of
this family are putrescine aminotransferase, as found in
Escherichia coli, Erwinia carotovora subsp. atroseptica,
and closely related species. This pyridoxal phosphate
enzyme, as characterized in E. coli, can act also on
cadaverine and, more weakly, spermidine [Central
intermediary metabolism, Polyamine biosynthesis].
Length = 442
Score = 75.8 bits (186), Expect = 5e-16
Identities = 44/143 (30%), Positives = 64/143 (44%), Gaps = 16/143 (11%)
Query: 87 RNGKRPCAFFAESLQSCGGQIIPPANYLREVYK------------HVQVGFGRVGTHWWA 134
+ G A E +Q GG I+PP YL V VQ G GR G
Sbjct: 220 KTGDDVAAIILEPIQGEGGVILPPEGYLPAVRALCDEFGALLILDEVQTGMGRTGK---M 276
Query: 135 FQLQGDDIIPDIVTVGKPMGNG-HPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVA 193
F + + + PDI+ + K +G G P+ A I T+ + + + T+GGNP++CA A
Sbjct: 277 FACEHEGVQPDILCLAKALGGGVMPIGATIATEAVFSVLFDNPFLHTTTFGGNPLACAAA 336
Query: 194 NAVMEVLETENLREHALDVGNQL 216
A + L +NL A G+ L
Sbjct: 337 LATINELLEKNLPAQAAIKGDFL 359
>gnl|CDD|129783 TIGR00700, GABAtrnsam, 4-aminobutyrate aminotransferase,
prokaryotic type. This enzyme is a class III
pyridoxal-phosphate-dependent aminotransferase. This
model describes known bacterial examples of the enzyme.
The best archaeal matches are presumed but not trusted
to have the equivalent function. The degree of sequence
difference between this set and known eukaryotic
(mitochondrial) examples is greater than the distance to
some proteins known to have different functions, and so
separate models are built for prokaryotic and eukaryotic
sets. E. coli has two isozymes. Alternate names include
GABA transaminase, gamma-amino-N-butyrate transaminase,
and beta-alanine--oxoglutarate aminotransferase [Central
intermediary metabolism, Other].
Length = 420
Score = 75.7 bits (186), Expect = 6e-16
Identities = 50/182 (27%), Positives = 77/182 (42%), Gaps = 26/182 (14%)
Query: 53 PDVYRGKYPADKYPDEDLGVKYAQDVQDLIEAMGRNG------KRPCAFFAESLQSCGGQ 106
P+VYR P YP D + + A A E +Q GG
Sbjct: 156 PEVYRAPLP---YPYRDGLLDKQLSTDGELAAARAIFVIDVGANNVAALVIEPVQGEGGF 212
Query: 107 IIPPANYLREVY----KH--------VQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMG 154
I+P ++ + +H VQ GF R G F + + PD++T K +
Sbjct: 213 IVPAKGFVPALLDWCREHGIVFIADEVQTGFARTGAM---FACEHEGPEPDLITTAKSLA 269
Query: 155 NGHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLETENLREHALDVGN 214
+G P++ V EI + G+ TY GNP++CA A AV+ ++E+E L E A +G
Sbjct: 270 DGLPLSGVTGRAEIMDAPAPGGLG--GTYAGNPLACAAALAVLAIIESEGLIERARQIGR 327
Query: 215 QL 216
+
Sbjct: 328 LV 329
Score = 27.5 bits (61), Expect = 7.1
Identities = 13/21 (61%), Positives = 15/21 (71%)
Query: 2 ARYPLIGDVRGIGLFVGVELV 22
A P IGDVRG+G + VELV
Sbjct: 338 AVDPRIGDVRGLGAMIAVELV 358
>gnl|CDD|183486 PRK12381, PRK12381, bifunctional succinylornithine
transaminase/acetylornithine transaminase; Provisional.
Length = 406
Score = 75.1 bits (185), Expect = 6e-16
Identities = 44/124 (35%), Positives = 65/124 (52%), Gaps = 21/124 (16%)
Query: 93 CAFFAESLQSCGGQIIPPANY-----LRE---------VYKHVQVGFGRVGTHWWAFQLQ 138
CA E +Q GG I PA+ LRE ++ VQ G GR G +A+
Sbjct: 185 CAVIVEPIQGEGGVI--PADKAFLQGLRELCDRHNALLIFDEVQTGVGRTG-ELYAYMHY 241
Query: 139 GDDIIPDIVTVGKPMGNGHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVME 198
G + PD++T K +G G P+ A++TT++ A G + TYGGNP++ AVA V+E
Sbjct: 242 G--VTPDVLTTAKALGGGFPIGAMLTTEKCASVMT-VGT-HGTTYGGNPLASAVAGKVLE 297
Query: 199 VLET 202
++ T
Sbjct: 298 LINT 301
>gnl|CDD|177748 PLN00144, PLN00144, acetylornithine transaminase.
Length = 382
Score = 75.1 bits (185), Expect = 6e-16
Identities = 42/140 (30%), Positives = 65/140 (46%), Gaps = 21/140 (15%)
Query: 91 RPCAFFAESLQSCGGQIIPPAN-----YLRE---------VYKHVQVGFGRVGTHWWAFQ 136
+ A F E +Q GG I PA LR V+ VQ G GR G + WA +
Sbjct: 167 KTAAVFVEPVQGEGG--IYPATKEFLQGLRALCDEAGALLVFDEVQCGLGRTG-YLWAHE 223
Query: 137 LQGDDIIPDIVTVGKPMGNGHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAV 196
G + PDI+T+ KP+ G P+ AV+ T+++A + ++ +T+ G P+ C A AV
Sbjct: 224 AYG--VEPDIMTLAKPLAGGLPIGAVLVTEKVASAINPG--DHGSTFAGGPLVCNAALAV 279
Query: 197 MEVLETENLREHALDVGNQL 216
++ + G L
Sbjct: 280 LDKISKPGFLASVAKKGEYL 299
Score = 28.5 bits (64), Expect = 2.8
Identities = 9/21 (42%), Positives = 15/21 (71%)
Query: 1 MARYPLIGDVRGIGLFVGVEL 21
+ P + +VRG+GL VG++L
Sbjct: 307 LGGNPHVKEVRGVGLLVGIQL 327
>gnl|CDD|179505 PRK02936, argD, acetylornithine aminotransferase; Provisional.
Length = 377
Score = 74.2 bits (183), Expect = 1e-15
Identities = 45/137 (32%), Positives = 66/137 (48%), Gaps = 21/137 (15%)
Query: 98 ESLQSCGGQIIPPANYLREVYKH------------VQVGFGRVGTHWWAFQLQGDDIIPD 145
E +Q GG I +L+EV VQ G GR GT F + + PD
Sbjct: 174 EVVQGEGGVIPADPAFLQEVQTLCKKFGALLIIDEVQTGIGRTGT---LFAYEQFGLDPD 230
Query: 146 IVTVGKPMGNGHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLET--- 202
IVTV K +GNG PV A+I KE+ +F + +T+GGNP++ A A V++V++
Sbjct: 231 IVTVAKGLGNGIPVGAMIGKKELGTAF--GPGSHGSTFGGNPLAMAAAKEVLQVIKQPSF 288
Query: 203 -ENLREHALDVGNQLHT 218
E ++E +L
Sbjct: 289 LEEVQEKGEYFLQKLQE 305
>gnl|CDD|235685 PRK06058, PRK06058, 4-aminobutyrate aminotransferase; Provisional.
Length = 443
Score = 74.3 bits (183), Expect = 2e-15
Identities = 58/177 (32%), Positives = 83/177 (46%), Gaps = 23/177 (12%)
Query: 53 PDVYRG--KYP-ADKYPDEDLGVKYAQDVQDLIEA-MGRNGKRPCAFFAESLQSCGGQII 108
P+VYR YP D G + A +IE +G A E +Q GG I+
Sbjct: 179 PEVYRAPMSYPYRDPKGLATDGEEAAARAITVIEKQVG--ADNLAAVIIEPIQGEGGFIV 236
Query: 109 PPANYL-------RE-----VYKHVQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNG 156
P +L RE + VQ GF R G W+A + +G I+PD++T K + G
Sbjct: 237 PAEGFLPALLEWCRENGVVFIADEVQTGFARTG-AWFACEHEG--IVPDLITTAKGIAGG 293
Query: 157 HPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLETENLREHALDVG 213
P++AV EI + G+ TYGGNPV+CA A A +E +E ++L A +
Sbjct: 294 LPLSAVTGRAEIMDAPHPGGLG--GTYGGNPVACAAALAAIETIEEDDLVARARQIE 348
Score = 30.8 bits (70), Expect = 0.50
Identities = 11/22 (50%), Positives = 13/22 (59%)
Query: 2 ARYPLIGDVRGIGLFVGVELVT 23
A IGDVRG G + +ELV
Sbjct: 360 AEDDRIGDVRGRGAMIAIELVK 381
>gnl|CDD|168145 PRK05639, PRK05639, 4-aminobutyrate aminotransferase; Provisional.
Length = 457
Score = 73.8 bits (181), Expect = 3e-15
Identities = 54/178 (30%), Positives = 85/178 (47%), Gaps = 21/178 (11%)
Query: 51 PCPDVYRGKYPADKY--PDEDLGVKYAQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQII 108
P P+ YR + + Y PDE L ++ +++ + + A FAE +Q G ++
Sbjct: 181 PYPNPYRNPWGINGYEEPDE-LINRFLDYLENYVFSHVVPPDEVAALFAEPIQGDAGIVV 239
Query: 109 PPANYLREVYK------------HVQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNG 156
PP N+ +E+ K VQ G GR G W+A + + PD++ GK + +G
Sbjct: 240 PPENFFKELKKLLDEHGILLVMDEVQTGIGRTGK-WFASEWFE--VKPDLIIFGKGVASG 296
Query: 157 HPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLETENLREHALDVGN 214
++ VI KE+ T T NPV A A A +E++E ENL ++AL VG
Sbjct: 297 MGLSGVIGRKEL---MDLTSGSALLTPAANPVISAAAEATLEIIEEENLLKNALKVGE 351
Score = 32.6 bits (74), Expect = 0.13
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 3 RYPLIGDVRGIGLFVGVELVTCRKQKTP 30
+ +IGDVRG GL +GVE+V + P
Sbjct: 363 SFEVIGDVRGKGLMIGVEIVKENGKPDP 390
>gnl|CDD|180390 PRK06082, PRK06082, 4-aminobutyrate aminotransferase; Provisional.
Length = 459
Score = 73.6 bits (181), Expect = 3e-15
Identities = 55/175 (31%), Positives = 85/175 (48%), Gaps = 25/175 (14%)
Query: 51 PCPDVYRGKYPADKYPDEDLGVKYAQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPP 110
P YRG +P D V YA ++ +IE G G AF AE++++ Q+
Sbjct: 197 PPAVSYRGAFPD---ADGS-DVHYADYLEYVIEKEGGIG----AFIAEAVRNTDVQVPSK 248
Query: 111 ANY--LREVY-KH--------VQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNGH-P 158
A + +RE+ KH + G GR G W+ Q I PDI+ +GK +G G P
Sbjct: 249 AYWKRVREICDKHNVLLIIDEIPNGMGRTG-EWFTHQ--AYGIEPDILCIGKGLGGGLVP 305
Query: 159 VAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLETENLREHALDVG 213
+AA+IT K+ + + + ++ T+ +P+ CA A A +EV+E E L E
Sbjct: 306 IAAMIT-KDKYNTAAQISLGHY-THEKSPLGCAAALATIEVIEQEGLLEKVKADS 358
Score = 54.0 bits (130), Expect = 1e-08
Identities = 26/40 (65%), Positives = 29/40 (72%)
Query: 2 ARYPLIGDVRGIGLFVGVELVTCRKQKTPATSEAQHVITR 41
A+YPLIGDVRGIGL GVELVT R K A EA+ V+ R
Sbjct: 370 AKYPLIGDVRGIGLLWGVELVTDRHTKERAYDEAEAVLYR 409
>gnl|CDD|215405 PLN02760, PLN02760, 4-aminobutyrate:pyruvate transaminase.
Length = 504
Score = 73.3 bits (180), Expect = 3e-15
Identities = 51/175 (29%), Positives = 85/175 (48%), Gaps = 25/175 (14%)
Query: 52 CPDVYRGKYPADKYPDEDLGVKYAQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPA 111
CP +R P + +E+ + A ++++LI G + AF AE + GG I PPA
Sbjct: 225 CPHYWRFHLPGET--EEEFSTRLADNLENLILKEGP--ETIAAFIAEPVMGAGGVIPPPA 280
Query: 112 NYLREVYKHVQ------------VGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNGH-P 158
Y ++ ++ FGR+GT F +I PD+V++ K + + + P
Sbjct: 281 TYFEKIQAVLKKYDILFIADEVICAFGRLGT---MFGCDKYNIKPDLVSLAKALSSAYMP 337
Query: 159 VAAVITTKEIAKSF--QETGVEYFN---TYGGNPVSCAVANAVMEVLETENLREH 208
+ AV+ + EI+ Q + F TY G+PVSCAVA +++ + N+ EH
Sbjct: 338 IGAVLVSPEISDVIHSQSNKLGSFAHGFTYSGHPVSCAVALEALKIYKERNIPEH 392
Score = 29.4 bits (66), Expect = 1.5
Identities = 10/18 (55%), Positives = 14/18 (77%)
Query: 5 PLIGDVRGIGLFVGVELV 22
P+IG++RG GL +G E V
Sbjct: 411 PIIGEIRGTGLILGTEFV 428
>gnl|CDD|235884 PRK06917, PRK06917, hypothetical protein; Provisional.
Length = 447
Score = 73.2 bits (180), Expect = 4e-15
Identities = 53/208 (25%), Positives = 84/208 (40%), Gaps = 41/208 (19%)
Query: 37 HVITRPPVRMSTEAPCPDVYRGKYPADKYPDEDLGVKYAQDVQDLIEAMGRNGK-RPCAF 95
++ P P YR + A +++ IE R G AF
Sbjct: 155 SLLEDYPT-----ISAPYCYRCPVQKVY---PTCQLACATELETAIE---RIGAEHIAAF 203
Query: 96 FAESL-QSCGGQIIPPANY---LREVYKH---------VQVGFGRVGT-----HWWAFQL 137
AE + + G ++PP Y ++E+ H V G GR G HW
Sbjct: 204 IAEPIIGAAGAAVVPPKGYYKVIKEICDHYDILFIADEVMTGLGRTGAMFAMEHW----- 258
Query: 138 QGDDIIPDIVTVGKPMGNGH-PVAAVITTKEIAKSFQETG--VEYFNTYGGNPVSCAVAN 194
+ PDI+T+GK +G G+ P+AA + + + + + +T NP+S A A
Sbjct: 259 ---GVEPDIMTLGKGLGAGYTPIAATVVSDRVMEPILRGSRSIMSGHTLSANPLSAATAL 315
Query: 195 AVMEVLETENLREHALDVGNQLHTPKKE 222
AV+E +E NL E A + G L ++
Sbjct: 316 AVLEYMEKHNLPEKAAEKGEYLIKGLQK 343
Score = 44.3 bits (105), Expect = 2e-05
Identities = 15/36 (41%), Positives = 20/36 (55%)
Query: 1 MARYPLIGDVRGIGLFVGVELVTCRKQKTPATSEAQ 36
+ +IGDVRG GL +GVE V +K K P +
Sbjct: 345 QQQSTIIGDVRGKGLLIGVEFVADKKTKQPFSKSQA 380
>gnl|CDD|180401 PRK06105, PRK06105, aminotransferase; Provisional.
Length = 460
Score = 73.1 bits (180), Expect = 4e-15
Identities = 51/184 (27%), Positives = 85/184 (46%), Gaps = 25/184 (13%)
Query: 52 CPDVYRGKYPADKYPDEDLGVKYAQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPA 111
CP YR P + +E + A +++ LI A G + AF E + GG I+PP
Sbjct: 183 CPHYYRFGLPGES--EEAFATRLANELEALILAEGPD--TIAAFIGEPVMGAGGVIVPPK 238
Query: 112 NY-------LRE-----VYKHVQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNGH-P 158
Y LR+ V V GFGR G + + G I PDI+ + K + + + P
Sbjct: 239 TYWEKIQAVLRKYDILLVADEVICGFGRTGN-MFGCETFG--IKPDILVMSKQLSSSYQP 295
Query: 159 VAAVITTKEIAKSFQETG--VEYFN---TYGGNPVSCAVANAVMEVLETENLREHALDVG 213
++AV+ +++ + + F T G+PV+ AVA + ++E +L +A + G
Sbjct: 296 LSAVLMNEKVYDPIADESGKIGTFGHGFTASGHPVAAAVALENLAIIEERDLVGNAAERG 355
Query: 214 NQLH 217
+L
Sbjct: 356 ARLQ 359
Score = 38.8 bits (91), Expect = 0.001
Identities = 24/65 (36%), Positives = 32/65 (49%), Gaps = 14/65 (21%)
Query: 1 MARYPLIGDVRGIGLFVGVELVTCRKQKTP------------ATSEAQHVITRPPVRMST 48
+A +PL+G+VRG+GL VELV + KTP A + VI+R T
Sbjct: 365 LADHPLVGEVRGVGLIAAVELVADKATKTPFEPPGKVGARANAAAHEHGVISRA--MGDT 422
Query: 49 EAPCP 53
A CP
Sbjct: 423 LAFCP 427
>gnl|CDD|236027 PRK07483, PRK07483, hypothetical protein; Provisional.
Length = 443
Score = 71.1 bits (175), Expect = 2e-14
Identities = 56/211 (26%), Positives = 91/211 (43%), Gaps = 37/211 (17%)
Query: 25 RKQKTPATSEAQHVITRPPVRMSTEAPCPDVYRGKYPADKYPDEDLGVKYAQDVQDLIEA 84
R+ P EA HV +PC Y + DE G + A +++ I
Sbjct: 149 REPFAPLLIEAHHV-----------SPC---YAYREQRAGESDEAYGQRLADELEAKILE 194
Query: 85 MGRNGKRPCAFFAESL-QSCGGQIIPPANYLREVY----KH--------VQVGFGRVGTH 131
+G + AF AE++ + G + P Y + + ++ V G GR GT
Sbjct: 195 LGPD--TVAAFVAETVVGATAGAVPPVPGYFKRIREVCDRYGVLLILDEVMCGMGRTGT- 251
Query: 132 WWAFQLQGDDIIPDIVTVGKPMGNGH-PVAAVITTKEIAKSFQETGVEYF---NTYGGNP 187
F + D + PD+VT+ K +G G+ P+ AV+ + I + + G +F +TY G+
Sbjct: 252 --LFACEEDGVAPDLVTIAKGLGAGYQPIGAVLASDRIYDAIAD-GSGFFQHGHTYLGHA 308
Query: 188 VSCAVANAVMEVLETENLREHALDVGNQLHT 218
+CA A AV V+ + L + G QL
Sbjct: 309 TACAAALAVQRVIAEDGLLANVRARGEQLRA 339
Score = 43.0 bits (102), Expect = 6e-05
Identities = 17/29 (58%), Positives = 21/29 (72%)
Query: 2 ARYPLIGDVRGIGLFVGVELVTCRKQKTP 30
++P +GD+RG GLFVGVELV R K P
Sbjct: 346 GQHPHVGDIRGRGLFVGVELVADRATKAP 374
>gnl|CDD|179636 PRK03715, argD, acetylornithine transaminase protein; Provisional.
Length = 395
Score = 69.3 bits (170), Expect = 7e-14
Identities = 40/96 (41%), Positives = 53/96 (55%), Gaps = 6/96 (6%)
Query: 121 VQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNGHPVAAVITTKEIAKSFQETGVEYF 180
VQ G GR GT +A++L G I PDI+T+GK +G G P+AA++ E+A F E G +
Sbjct: 221 VQTGCGRTGT-LFAYELSG--IEPDIMTLGKGIGGGVPLAALLAKAEVA-VF-EAG-DQG 274
Query: 181 NTYGGNPVSCAVANAVMEVLETENLREHALDVGNQL 216
TY GNP+ AV AV+ L E G L
Sbjct: 275 GTYNGNPLMTAVGVAVISQLLAPGFLEGVRARGEYL 310
>gnl|CDD|236149 PRK08088, PRK08088, 4-aminobutyrate aminotransferase; Validated.
Length = 425
Score = 68.7 bits (168), Expect = 1e-13
Identities = 56/179 (31%), Positives = 77/179 (43%), Gaps = 26/179 (14%)
Query: 55 VYRGKYPADKYPDEDLGVKYAQDVQDLIEAMGRNGKRP---CAFFAESLQSCGG-QIIPP 110
VYR YP + GV D IE + +N P A E +Q GG P
Sbjct: 166 VYRALYPCPLH-----GVS-EDDAIASIERIFKNDAAPEDIAAIIIEPVQGEGGFYAASP 219
Query: 111 A--NYLRE---------VYKHVQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNGHPV 159
A LR + VQ G GR GT F ++ + D+ T K + G P+
Sbjct: 220 AFMQRLRALCDEHGIMLIADEVQTGAGRTGTL---FAMEQMGVAADLTTFAKSIAGGFPL 276
Query: 160 AAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLETENLREHALDVGNQLHT 218
A V E+ + G+ TY GNP++CA A AV++V E ENL + A +G +L
Sbjct: 277 AGVTGRAEVMDAIAPGGLG--GTYAGNPIACAAALAVLKVFEQENLLQKANALGEKLKD 333
Score = 33.2 bits (76), Expect = 0.081
Identities = 12/40 (30%), Positives = 19/40 (47%)
Query: 2 ARYPLIGDVRGIGLFVGVELVTCRKQKTPATSEAQHVITR 41
++P IGDVRG+G + +EL P ++ R
Sbjct: 340 EKHPEIGDVRGLGAMIAIELFEDGDHSKPNAKLTAQIVAR 379
>gnl|CDD|171472 PRK12403, PRK12403, putative aminotransferase; Provisional.
Length = 460
Score = 67.6 bits (165), Expect = 3e-13
Identities = 46/159 (28%), Positives = 78/159 (49%), Gaps = 20/159 (12%)
Query: 68 EDLGVKYAQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVYK-------- 119
+ G + A +++ I +G + F AE Q GG I PP +Y E+ +
Sbjct: 201 AEFGRRAALQLEEKILELG--AENVAGFVAEPFQGAGGMIFPPESYWPEIQRICRQYDVL 258
Query: 120 ----HVQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNGH-PVAAVITTKEIAKSFQE 174
V GFGR G W+A + G + PD +++ K + +G+ P+ ++ +K IA++ E
Sbjct: 259 LCADEVIGGFGRTG-EWFAHEHFGFE--PDTLSIAKGLTSGYVPMGGLVLSKRIAEALVE 315
Query: 175 TGVEYFN--TYGGNPVSCAVANAVMEVLETENLREHALD 211
G + + TY G+PV+ AVA A ++ L E + D
Sbjct: 316 QGGVFAHGLTYSGHPVAAAVAIANLKALRDEGVVTRVKD 354
>gnl|CDD|236026 PRK07482, PRK07482, hypothetical protein; Provisional.
Length = 461
Score = 67.3 bits (165), Expect = 4e-13
Identities = 54/185 (29%), Positives = 84/185 (45%), Gaps = 27/185 (14%)
Query: 52 CPDVYRGKYPADKYPDEDLGVKY-AQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPP 110
P YR E+ Y A ++++LI A G + AF AE + GG + PP
Sbjct: 185 APHYYRRADAGM---SEEQFSAYCADELEELILAEGPD--TIAAFIAEPVLGTGGIVPPP 239
Query: 111 ANY---LREVYK---------HVQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNGH- 157
A Y ++ V K V GFGR+G+ F I PD++TV K + + +
Sbjct: 240 AGYWPAIQAVLKKYDILLIADEVVTGFGRLGS---MFGSDHYGIEPDLITVAKGLTSAYA 296
Query: 158 PVAAVITT----KEIAKSFQETG-VEYFNTYGGNPVSCAVANAVMEVLETENLREHALDV 212
P++ I + + E G + + TY G+P+ A A A +++LE ENL +A +V
Sbjct: 297 PLSGSIVGEKVWDVLEQGSDEHGAIGHGWTYSGHPICAAAALANLDILERENLVGNAAEV 356
Query: 213 GNQLH 217
G
Sbjct: 357 GAYFR 361
Score = 33.4 bits (77), Expect = 0.080
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 1 MARYPLIGDVRGIGLFVGVELVTCRKQKTP 30
+PL+G+VRG+G+ VE V R +TP
Sbjct: 368 FGDHPLVGEVRGVGMLAAVEFVADRDDRTP 397
>gnl|CDD|235687 PRK06062, PRK06062, hypothetical protein; Provisional.
Length = 451
Score = 65.4 bits (160), Expect = 2e-12
Identities = 42/139 (30%), Positives = 70/139 (50%), Gaps = 16/139 (11%)
Query: 94 AFFAESLQSCGGQIIPPANYLREVY----KH--------VQVGFGRVGTHWWAFQLQGDD 141
A ES+ G ++PP YL V +H V GFGR G W+A +
Sbjct: 217 AILLESVPGTAGILVPPPGYLAGVRELCDRHGIVLIADEVMAGFGRTGK-WFAIEH--FG 273
Query: 142 IIPDIVTVGKPMGNGH-PVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVL 200
++PD++T K + +G+ P+ V ++ IA +F + TY G+P++CA A A + +
Sbjct: 274 VVPDLITFAKGVNSGYVPLGGVAISEAIAATFADRPYPGGLTYSGHPLACAAAVATINAM 333
Query: 201 ETENLREHALDVGNQLHTP 219
E E + E+A +G ++ P
Sbjct: 334 EEEGIVENAARIGAEVLGP 352
Score = 43.1 bits (102), Expect = 5e-05
Identities = 13/29 (44%), Positives = 21/29 (72%)
Query: 2 ARYPLIGDVRGIGLFVGVELVTCRKQKTP 30
R+P +G+VRG+G+F +ELV R+ + P
Sbjct: 359 ERHPSVGEVRGLGVFWALELVADRETREP 387
>gnl|CDD|179803 PRK04260, PRK04260, acetylornithine aminotransferase; Provisional.
Length = 375
Score = 64.9 bits (158), Expect = 2e-12
Identities = 36/96 (37%), Positives = 54/96 (56%), Gaps = 5/96 (5%)
Query: 121 VQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNGHPVAAVITTKEIAKSFQETGVEYF 180
VQ G GR G +AF+ G I PDI T+ K + NG PV A++ + +F +
Sbjct: 207 VQTGMGRTG-KLYAFEHYG--IEPDIFTLAKGLANGVPVGAMLAKSSLGGAFGYG--SHG 261
Query: 181 NTYGGNPVSCAVANAVMEVLETENLREHALDVGNQL 216
+T+GGN +S A A+A ++++ T E AL+ GN L
Sbjct: 262 STFGGNKLSMAAASATLDIMLTAGFLEQALENGNYL 297
>gnl|CDD|235892 PRK06938, PRK06938, diaminobutyrate--2-oxoglutarate
aminotransferase; Provisional.
Length = 464
Score = 64.7 bits (158), Expect = 3e-12
Identities = 41/139 (29%), Positives = 66/139 (47%), Gaps = 18/139 (12%)
Query: 90 KRPCAFFAESLQSCGGQIIPPANYLREVYK------------HVQVGFGRVGTHWWAFQL 137
P A E +Q GG I P +LR + + +Q GFGR G +AF+
Sbjct: 230 VLPAAVILEVVQGEGGVIPAPIEWLRGLRRITEEAGIPLIVDEIQSGFGRTGK-MFAFEH 288
Query: 138 QGDDIIPDIVTVGKPMGNGHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVM 197
G IIPD+V + K +G P+A V+ + + + G + T+ GN ++ A +A +
Sbjct: 289 AG--IIPDVVVLSKAIGGSLPLAVVVYREWLDT--WQPGA-HAGTFRGNQMAMAAGSATL 343
Query: 198 EVLETENLREHALDVGNQL 216
++ L EHA +G +L
Sbjct: 344 RYIKEHRLAEHAAAMGERL 362
Score = 36.5 bits (85), Expect = 0.008
Identities = 13/21 (61%), Positives = 16/21 (76%)
Query: 2 ARYPLIGDVRGIGLFVGVELV 22
YP +GDVRG GL +GVE+V
Sbjct: 371 RDYPQLGDVRGRGLMLGVEIV 391
>gnl|CDD|180690 PRK06777, PRK06777, 4-aminobutyrate aminotransferase; Provisional.
Length = 421
Score = 64.1 bits (156), Expect = 5e-12
Identities = 48/170 (28%), Positives = 80/170 (47%), Gaps = 27/170 (15%)
Query: 65 YPDEDLGVKYAQDVQDLIEAMGR------NGKRPCAFFAESLQSCGGQIIPPANYLREVY 118
YP+E GV V++ + ++ R + A E +Q GG + P ++ +
Sbjct: 170 YPNELHGVS----VEEALSSVERLFKADIAPDQVAAILLEPIQGEGGFNVAPPEFMSALR 225
Query: 119 K------------HVQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNGHPVAAVITTK 166
VQ GF R G F ++ D+ PD++T+ K +G G P++AV+
Sbjct: 226 TLCDEHGILLIADEVQTGFARTGK---LFAMEYYDVKPDLITMAKSLGGGMPISAVVGRA 282
Query: 167 EIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLETENLREHALDVGNQL 216
E+ + G+ TY GNP++ A A AV++V+ E L + AL +G L
Sbjct: 283 EVMDAPAPGGLG--GTYAGNPLAVAAALAVLDVIAEEKLCQRALILGAHL 330
>gnl|CDD|180330 PRK05965, PRK05965, hypothetical protein; Provisional.
Length = 459
Score = 63.1 bits (154), Expect = 9e-12
Identities = 45/184 (24%), Positives = 76/184 (41%), Gaps = 26/184 (14%)
Query: 51 PCPDVYRGKYPADKYPDEDLGVKYAQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPP 110
P P YR D + + ++ + +G AFF E +Q GG I+PP
Sbjct: 180 PSPYPYRNPVGDD---PQAIIAASVAALRAKVAELG--ADNVAAFFCEPIQGSGGVIVPP 234
Query: 111 ANYLRE------------VYKHVQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNGH- 157
+L+ V V GFGR G F + + ++PD++TV K + +G+
Sbjct: 235 KGWLKAMREACRELGILFVADEVITGFGRTGP---LFACEAEGVVPDLMTVAKGLTSGYV 291
Query: 158 PVAAVITTKEIAKSFQE-----TGVEYFNTYGGNPVSCAVANAVMEVLETENLREHALDV 212
P+ AV+ + + + + V + TY +PVS AV V+ + L +
Sbjct: 292 PMGAVLMSDHVYQGIADGAGAAAPVGHGYTYSAHPVSAAVGLEVLRLYHEGGLLANGQKA 351
Query: 213 GNQL 216
G +
Sbjct: 352 GPRF 355
Score = 37.0 bits (86), Expect = 0.006
Identities = 15/27 (55%), Positives = 19/27 (70%)
Query: 4 YPLIGDVRGIGLFVGVELVTCRKQKTP 30
+PL+GDVRG GL +ELV + KTP
Sbjct: 365 HPLVGDVRGRGLLGALELVADKATKTP 391
>gnl|CDD|129792 TIGR00709, dat, 2,4-diaminobutyrate 4-transaminases. This family
consists of L-diaminobutyric acid transaminases. This
general designation covers both 2.6.1.76
(diaminobutyrate-2-oxoglutarate transaminase, which uses
glutamate as the amino donor in DABA biosynthesis), and
2.6.1.46 (diaminobutyrate--pyruvate transaminase, which
uses alanine as the amino donor). Most members with
known function are 2.6.1.76, and at least some
annotations as 2.6.1.46 in current databases at time of
model revision are incorrect. A distinct branch of this
family contains examples of 2.6.1.76 nearly all of which
are involved in ectoine biosynthesis. A related enzyme
is 4-aminobutyrate aminotransferase (EC 2.6.1.19), also
called GABA transaminase. These enzymes all are
pyridoxal phosphate-containing class III
aminotransferase [Central intermediary metabolism,
Other].
Length = 442
Score = 62.7 bits (152), Expect = 1e-11
Identities = 45/178 (25%), Positives = 82/178 (46%), Gaps = 21/178 (11%)
Query: 51 PCPDVYRGKYPADKYPDEDLGVKYAQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPP 110
P P YR + + ++Y ++ IE + +P A E++Q GG + P
Sbjct: 169 PYPHEYRCPFGIGGEAGSNASIEY---FENFIEDVESGVDKPAAVILEAIQGEGGVVAAP 225
Query: 111 ANYLREVYK------------HVQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNGHP 158
+ +L+++ + VQ GFGR GT +AF+ G I PD V + K +G G P
Sbjct: 226 SEWLQKIREVTRKHDIKLILDEVQAGFGRSGT-MFAFEHAG--IEPDFVVMSKAVGGGLP 282
Query: 159 VAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLETENLREHALDVGNQL 216
+A ++ E +Q G + T+ GN ++ + + +NL ++A + G ++
Sbjct: 283 LAVLLIAPEFDA-WQPAG--HTGTFRGNQLAMVTGTEALNYWKDDNLAQNAQERGERI 337
Score = 29.5 bits (66), Expect = 1.3
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 3 RYPLIGDVRGIGLFVGVELVTCRKQK 28
+P IG+VRG GL G+ +V R+ K
Sbjct: 347 EHPCIGNVRGRGLMQGIMIVDERQSK 372
>gnl|CDD|180800 PRK07030, PRK07030, adenosylmethionine--8-amino-7-oxononanoate
transaminase; Provisional.
Length = 466
Score = 60.5 bits (147), Expect = 8e-11
Identities = 46/189 (24%), Positives = 82/189 (43%), Gaps = 29/189 (15%)
Query: 40 TRPPVRMST-EAPCPDVYRGKYPADKYPDEDLGVKYAQDVQDLIEAMGRNGKRPCAFFAE 98
T P+ + T + P PD Y + + + + + + A E
Sbjct: 168 TYKPLLLDTIKVPSPDCYL------RPEGMSWEEHSRRMFAHMEQTLAEHHDEIAAVIVE 221
Query: 99 SLQSCGG--QIIPPA--NYLRE---------VYKHVQVGFGRVGTHWWAFQLQGDDIIPD 145
L G ++ P LRE ++ + VGFGR GT F + I PD
Sbjct: 222 PLIQGAGGMRMYHPVYLKLLREACDRYGVHLIHDEIAVGFGRTGT---MFACEQAGIRPD 278
Query: 146 IVTVGKPMGNGH-PVAAVITTKEIAKSFQE-----TGVEYFNTYGGNPVSCAVANAVMEV 199
+ + K + G+ P+AAV+TT + ++F + + ++Y GNP++CA A A +++
Sbjct: 279 FLCLSKALTGGYLPLAAVLTTDTVYQAFYDDYPTLRAFLHSHSYTGNPLACAAALATLDI 338
Query: 200 LETENLREH 208
E +N+ E+
Sbjct: 339 FEQDNVIEN 347
>gnl|CDD|182078 PRK09792, PRK09792, 4-aminobutyrate transaminase; Provisional.
Length = 421
Score = 59.3 bits (143), Expect = 2e-10
Identities = 46/167 (27%), Positives = 76/167 (45%), Gaps = 21/167 (12%)
Query: 65 YPDEDLGVKYAQDVQDLIEAMGR---NGKRPCAFFAESLQSCGGQIIPPANYLREVYK-- 119
YP + G+ QD D IE + + K+ A E +Q GG + P + + +
Sbjct: 170 YPSDLHGIS-TQDSLDAIERLFKSDIEAKQVAAIIFEPVQGEGGFNVAPKELVAAIRRLC 228
Query: 120 ----------HVQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNGHPVAAVITTKEIA 169
VQ GF R G F + PD++T+ K + G P++ V+ I
Sbjct: 229 DEHGIVMIADEVQSGFARTGK---LFAMDHYADKPDLMTMAKSLAGGMPLSGVVGNANIM 285
Query: 170 KSFQETGVEYFNTYGGNPVSCAVANAVMEVLETENLREHALDVGNQL 216
+ G+ TY GNP++ A A+AV+ +++ E+L E A +G +L
Sbjct: 286 DAPAPGGLG--GTYAGNPLAVAAAHAVLNIIDKESLCERANQLGQRL 330
>gnl|CDD|223080 COG0001, HemL, Glutamate-1-semialdehyde aminotransferase [Coenzyme
metabolism].
Length = 432
Score = 58.4 bits (142), Expect = 4e-10
Identities = 43/156 (27%), Positives = 63/156 (40%), Gaps = 20/156 (12%)
Query: 77 DVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANY---LRE---------VYKHVQVG 124
D++ L EA G A E + G + P + LRE ++ V G
Sbjct: 186 DLEALEEAFEEYGDDIAAVIVEPVAGNMGVVPPEPGFLEGLRELTEEHGALLIFDEVITG 245
Query: 125 FGRVGTH-WWAFQLQGDDIIPDIVTVGKPMGNGHPVAAVITTKEIAKSFQETGVEYF-NT 182
F RV + + PD+ T+GK +G G P+ A EI + G Y T
Sbjct: 246 F-RVALGGAQGY----YGVEPDLTTLGKIIGGGLPIGAFGGRAEIMEQLAPLGPVYQAGT 300
Query: 183 YGGNPVSCAVANAVMEVLET-ENLREHALDVGNQLH 217
GNP++ A A +E L T E + E +G +L
Sbjct: 301 LSGNPLAMAAGLATLEELMTEEGVYERLDALGERLA 336
>gnl|CDD|179868 PRK04612, argD, acetylornithine transaminase protein; Provisional.
Length = 408
Score = 58.4 bits (141), Expect = 4e-10
Identities = 30/87 (34%), Positives = 47/87 (54%), Gaps = 11/87 (12%)
Query: 117 VYKHVQVGFGRVGT---HWWAFQLQGDDIIPDIVTVGKPMGNGHPVAAVITTKEIAKSFQ 173
V +Q G GR GT HW + + PDIVT+ K +G G P+ A++ ++A++ Q
Sbjct: 225 VLDEIQCGMGRTGTLFAHW------QEQVTPDIVTLAKALGGGFPIGAMLAGPKVAETMQ 278
Query: 174 ETGVEYFNTYGGNPVSCAVANAVMEVL 200
+ T+GGNP++ AVA + L
Sbjct: 279 FGA--HGTTFGGNPLAAAVARVALRKL 303
>gnl|CDD|181189 PRK07986, PRK07986, adenosylmethionine--8-amino-7-oxononanoate
transaminase; Validated.
Length = 428
Score = 58.1 bits (141), Expect = 5e-10
Identities = 40/134 (29%), Positives = 64/134 (47%), Gaps = 19/134 (14%)
Query: 101 QSCGGQIIPPANYLREVYK------------HVQVGFGRVGTHWWAFQLQGDDIIPDIVT 148
Q GG I +L+ V K + GFGR G F + I PDI+
Sbjct: 215 QGAGGMRIYHPEWLKRVRKLCDREGILLIADEIATGFGRTGK---LFACEHAGIAPDILC 271
Query: 149 VGKPMGNGH-PVAAVITTKEIAKSFQETGVEYF---NTYGGNPVSCAVANAVMEVLETEN 204
+GK + G ++A +TT+E+A++ F T+ GNP++CAVANA + +LE+ +
Sbjct: 272 LGKALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPLACAVANASLSLLESGD 331
Query: 205 LREHALDVGNQLHT 218
++ + QL
Sbjct: 332 WQQQVAAIEAQLRE 345
>gnl|CDD|236336 PRK08742, PRK08742, adenosylmethionine--8-amino-7-oxononanoate
transaminase; Provisional.
Length = 472
Score = 58.1 bits (140), Expect = 5e-10
Identities = 47/174 (27%), Positives = 82/174 (47%), Gaps = 27/174 (15%)
Query: 50 APCPDVYRGKYPADKYPDEDLGVKYAQDVQDLIEAMGRNGKRPCAFFAES-LQSCGGQII 108
AP PD Y + P ED ++ A +Q L E ++ CA E LQ GG +
Sbjct: 201 APSPDAYLAE-PGQS--AEDYALQAADALQALFE---QSPGEICALILEPRLQCAGGMRM 254
Query: 109 PPANYLREVYK------------HVQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNG 156
YLR + + GFGR GT F + ++PD++ + K + G
Sbjct: 255 HHPAYLRRARELCDAHGAFLIADEIATGFGRTGT---LFACEQAGVMPDLLCLSKGLTGG 311
Query: 157 H-PVAAVITTKEIAKSF----QETGVEYFNTYGGNPVSCAVANAVMEVLETENL 205
P++AV+ T+++ +F +E + ++Y GNP++CA A A +++ +++
Sbjct: 312 FLPLSAVLATQQLYDAFLDDSRERAFLHSHSYTGNPLACAAALATLDIFADDDV 365
>gnl|CDD|236224 PRK08297, PRK08297, L-lysine aminotransferase; Provisional.
Length = 443
Score = 55.0 bits (133), Expect = 6e-09
Identities = 43/155 (27%), Positives = 63/155 (40%), Gaps = 34/155 (21%)
Query: 83 EAMGRNGKRPCAFFAESLQSCGGQIIPPANYLRE-----------------VYKHVQVGF 125
A R+ F AE +Q GG N+ R ++ VQ G
Sbjct: 217 AAFERHPHDIACFIAEPIQGEGGD-----NHFRPEFFAAMRELCDEHDALLIFDEVQTGV 271
Query: 126 GRVGTHWWAFQLQGDDIIPDIVTVGKPMGNGHPVAAVITTK---EIAKS-FQETGVEYFN 181
G GT WA+Q G + PDIV GK V ++ + E+ + F + +
Sbjct: 272 GLTGT-AWAYQQLG--VRPDIVAFGKKT----QVCGIMAGRRVDEVEDNVFAVSS-RINS 323
Query: 182 TYGGNPVSCAVANAVMEVLETENLREHALDVGNQL 216
T+GGN V A ++EV+E + L E+A G L
Sbjct: 324 TWGGNLVDMVRARRILEVIEEDGLVENAARQGEYL 358
>gnl|CDD|235889 PRK06931, PRK06931, diaminobutyrate--2-oxoglutarate
aminotransferase; Provisional.
Length = 459
Score = 53.6 bits (129), Expect = 2e-08
Identities = 48/150 (32%), Positives = 76/150 (50%), Gaps = 18/150 (12%)
Query: 79 QDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYL---REVY-KH--------VQVGFG 126
++ IE + ++P A E++Q GG P +L REV KH VQ GF
Sbjct: 213 ENFIEDVESGVRKPAAVILEAIQGEGGVNPAPVEWLQKIREVTQKHGILLIVDEVQAGFA 272
Query: 127 RVGTHWWAFQLQGDDIIPDIVTVGKPMGNGHPVAAVITTKEIAKSFQETGVEYFNTYGGN 186
R G +AF+ G I PDI+ + K +G G P+A + KE ++Q G + T+ GN
Sbjct: 273 RTGK-MFAFEHAG--IEPDIIVMSKAVGGGLPLAVLGIKKEF-DAWQPGG--HTGTFRGN 326
Query: 187 PVSCAVANAVMEVLETENLREHALDVGNQL 216
++ A +++L+ ENL ++A + G L
Sbjct: 327 QLAMATGLTTLKILKEENLAQNAAERGEWL 356
Score = 36.7 bits (85), Expect = 0.006
Identities = 14/26 (53%), Positives = 19/26 (73%)
Query: 3 RYPLIGDVRGIGLFVGVELVTCRKQK 28
RYP IG+VRG GL +G+E+V R+
Sbjct: 366 RYPCIGNVRGRGLMIGIEIVDERQPA 391
>gnl|CDD|180441 PRK06173, PRK06173, adenosylmethionine--8-amino-7-oxononanoate
transaminase; Provisional.
Length = 429
Score = 51.3 bits (123), Expect = 1e-07
Identities = 27/88 (30%), Positives = 49/88 (55%), Gaps = 7/88 (7%)
Query: 117 VYKHVQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNGH-PVAAVITTKEIAKSFQET 175
++ + GFGR G F L+ ++PDI+ +GK + G+ ++A ITT+ IA++
Sbjct: 245 IFDEIATGFGRTGK---LFALEHAGVVPDIMCIGKALTGGYLTLSATITTEAIAQTICSG 301
Query: 176 GVEYF---NTYGGNPVSCAVANAVMEVL 200
+ F T+ NP++CA+A + +L
Sbjct: 302 EAKCFMHGPTFMANPLACAIAAESIRLL 329
>gnl|CDD|101376 PRK04013, argD, acetylornithine/acetyl-lysine aminotransferase;
Provisional.
Length = 364
Score = 51.1 bits (122), Expect = 1e-07
Identities = 24/66 (36%), Positives = 39/66 (59%), Gaps = 6/66 (9%)
Query: 144 PDIVTVGKPMGNGHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLETE 203
PDIVT+GK +GNG PV+ +T ++ + ++ +T+GGNP++C + +L E
Sbjct: 223 PDIVTMGKGIGNGVPVSLTLTNFDVERG------KHGSTFGGNPLACKAVAVTLRILRRE 276
Query: 204 NLREHA 209
L E A
Sbjct: 277 RLVEKA 282
>gnl|CDD|180174 PRK05630, PRK05630, adenosylmethionine--8-amino-7-oxononanoate
transaminase; Provisional.
Length = 422
Score = 49.5 bits (118), Expect = 4e-07
Identities = 30/98 (30%), Positives = 49/98 (50%), Gaps = 8/98 (8%)
Query: 124 GFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNGH-PVAAVITTKEIAKSFQET----GVE 178
GFGR G F + PDI+ VGK + G AA + T ++A+ +
Sbjct: 246 GFGRTGE---LFATLAAGVTPDIMCVGKALTGGFMSFAATLCTDKVAQLISTPNGGGALM 302
Query: 179 YFNTYGGNPVSCAVANAVMEVLETENLREHALDVGNQL 216
+ T+ NP++CAVA+A +E++ET R+ + +L
Sbjct: 303 HGPTFMANPLACAVAHASLEIIETGMWRKQVKRIEAEL 340
>gnl|CDD|132295 TIGR03251, LAT_fam, L-lysine 6-transaminase. Characterized members
of this protein family are L-lysine 6-transaminase, also
called lysine epsilon-aminotransferase (LAT). The
immediate product of the reaction of this enzyme on
lysine, 2-aminoadipate 6-semialdehyde, becomes
1-piperideine 6-carboxylate, or P6C. This product may be
converted subsequently to pipecolate or
alpha-aminoadipate, lysine catabolites that may be
precursors of certain seconary metabolites.
Length = 431
Score = 49.4 bits (118), Expect = 4e-07
Identities = 41/148 (27%), Positives = 60/148 (40%), Gaps = 22/148 (14%)
Query: 84 AMGRNGKRPCAFFAESLQSCGGQIIPPANYLRE------------VYKHVQVGFGRVGTH 131
A F AE +Q GG +LR ++ VQ G G GT
Sbjct: 211 AFAERPHDIACFIAEPIQGEGGDNHFRPEFLRAMRALCDEHDALLIFDEVQTGVGLTGT- 269
Query: 132 WWAFQLQGDDIIPDIVTVGKPMGNGHPVAAVITTK---EIAKSFQETGVEYFNTYGGNPV 188
WA+Q G + PDIV GK V ++ + E+A + +T+GGN V
Sbjct: 270 AWAYQQLG--VQPDIVAFGKKT----QVCGIMAGRRVDEVADNVFAVPSRLNSTWGGNLV 323
Query: 189 SCAVANAVMEVLETENLREHALDVGNQL 216
A ++E++E E L ++A G L
Sbjct: 324 DMVRATRILEIIEEERLVDNARVQGAHL 351
>gnl|CDD|233100 TIGR00713, hemL, glutamate-1-semialdehyde-2,1-aminomutase. This
enzyme, glutamate-1-semialdehyde-2,1-aminomutase
(glutamate-1-semialdehyde aminotransferase, GSA
aminotransferase), contains a pyridoxal phosphate
attached at a Lys residue at position 283 of the seed
alignment. It is in the family of class III
aminotransferases [Biosynthesis of cofactors, prosthetic
groups, and carriers, Heme, porphyrin, and cobalamin].
Length = 423
Score = 44.2 bits (105), Expect = 2e-05
Identities = 36/146 (24%), Positives = 56/146 (38%), Gaps = 19/146 (13%)
Query: 77 DVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVYK------------HVQVG 124
D++ L E G+ E + G + P +L + V G
Sbjct: 181 DLEALEEVFEEYGEEIAGVIVEPVAGNMGVVPPKPEFLAGLRALTEEYGSLLIFDEVMTG 240
Query: 125 FGRVGTHWWAFQLQG-DDIIPDIVTVGKPMGNGHPVAAVITTKEIAKSFQETGVEY-FNT 182
F RV Q + PD+ T+GK +G G PV A +EI + G Y T
Sbjct: 241 F-RVALGGA----QEYFGVEPDLTTLGKIIGGGLPVGAFGGRREIMERLAPEGPVYQAGT 295
Query: 183 YGGNPVSCAVANAVMEVLETENLREH 208
GNP++ A A +++L+ E +
Sbjct: 296 LSGNPLAMAAGLATLKLLDEEGVYTE 321
>gnl|CDD|180471 PRK06209, PRK06209, glutamate-1-semialdehyde 2,1-aminomutase;
Provisional.
Length = 431
Score = 43.9 bits (104), Expect = 2e-05
Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 6/82 (7%)
Query: 141 DIIPDIVTVGKPMGNGHPVAAVITTKEIAK--SFQETGVEYF----NTYGGNPVSCAVAN 194
I+PD+ GK +GNG V+A+ +E + + T E T+G + A A
Sbjct: 241 GIVPDLSCFGKALGNGFAVSALAGKREYMELGGLEHTDRERVFLLSTTHGAETHALAAAI 300
Query: 195 AVMEVLETENLREHALDVGNQL 216
A M + E++ E + G +L
Sbjct: 301 ATMAIYRDEDVIERLHEQGAKL 322
>gnl|CDD|235894 PRK06943, PRK06943, adenosylmethionine--8-amino-7-oxononanoate
transaminase; Provisional.
Length = 453
Score = 41.3 bits (97), Expect = 2e-04
Identities = 36/154 (23%), Positives = 66/154 (42%), Gaps = 24/154 (15%)
Query: 69 DLGVKYAQDVQDLIEAMGRNGKRPCAFFAESLQSCG-GQIIPPANYLREV------YK-- 119
D+ + DV+ L + A E L C G + +YLR + Y
Sbjct: 202 DVAARALADVRRLFAE---RAGKIAALIVEPLVQCAAGMAMHDPSYLRGLRALCDRYGVH 258
Query: 120 ----HVQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNGH-PVAAVITTKEIAKSFQE 174
+ VG GR GT F + + PD + + K + G+ P++ V++ I +F +
Sbjct: 259 LIADEIAVGCGRTGTF---FACEQAGVWPDFLCLSKGISGGYLPLSLVLSRDAIFAAFYD 315
Query: 175 T----GVEYFNTYGGNPVSCAVANAVMEVLETEN 204
G + ++Y GNP++C A A +++ ++
Sbjct: 316 DDVTRGFLHSHSYTGNPLACRAALATLDLFAEDD 349
>gnl|CDD|234803 PRK00615, PRK00615, glutamate-1-semialdehyde aminotransferase;
Provisional.
Length = 433
Score = 41.3 bits (97), Expect = 2e-04
Identities = 20/69 (28%), Positives = 29/69 (42%), Gaps = 1/69 (1%)
Query: 141 DIIPDIVTVGKPMGNGHPVAAVITTKEIAKSFQETG-VEYFNTYGGNPVSCAVANAVMEV 199
+ PDI GK +G G P AAV+ K I G + T GNP++ A A + +
Sbjct: 259 HVKPDITVYGKILGGGLPAAAVVAHKSIMDHLAPEGTIFQAGTLSGNPLAMAAGKASINL 318
Query: 200 LETENLREH 208
+
Sbjct: 319 CREQGFYTQ 327
>gnl|CDD|234607 PRK00062, PRK00062, glutamate-1-semialdehyde aminotransferase;
Provisional.
Length = 426
Score = 40.4 bits (96), Expect = 4e-04
Identities = 29/96 (30%), Positives = 43/96 (44%), Gaps = 7/96 (7%)
Query: 124 GFGRVGTHWWAFQLQG-DDIIPDIVTVGKPMGNGHPVAAVITTKEIAKSFQETGVEY-FN 181
GF RV QG + PD+ T+GK +G G PV A +EI + G Y
Sbjct: 242 GF-RVALGGA----QGYYGVTPDLTTLGKIIGGGLPVGAFGGRREIMEQLAPLGPVYQAG 296
Query: 182 TYGGNPVSCAVANAVMEVLETENLREHALDVGNQLH 217
T GNP++ A A +++L+ E + +L
Sbjct: 297 TLSGNPLAMAAGLATLKLLKEPGFYEELEALTKRLA 332
>gnl|CDD|183493 PRK12389, PRK12389, glutamate-1-semialdehyde aminotransferase;
Provisional.
Length = 428
Score = 40.4 bits (95), Expect = 4e-04
Identities = 26/76 (34%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
Query: 142 IIPDIVTVGKPMGNGHPVAAVITTKEIAKSFQETGVEY-FNTYGGNPVSCAVANAVMEVL 200
+ PD+ +GK +G G P+ A K+I + G Y T GNP S A A +EVL
Sbjct: 259 VEPDLTALGKIIGGGLPIGAYGGRKDIMEQVAPLGPAYQAGTMAGNPASMAAGIACLEVL 318
Query: 201 ETENLREHALDVGNQL 216
+ E + E +G L
Sbjct: 319 QQEGVYEKLDRLGAML 334
>gnl|CDD|233853 TIGR02407, ectoine_ectB, diaminobutyrate--2-oxoglutarate
aminotransferase. Members of this family of class III
pyridoxal-phosphate-dependent aminotransferases are
diaminobutyrate--2-oxoglutarate aminotransferase (EC
2.6.1.76) that catalyze the first step in ectoine
biosynthesis from L-aspartate beta-semialdehyde. This
family is readily separated phylogenetically from
enzymes with the same substrate and product but involved
in other process such as siderophore (SP|Q9Z3R2) or
1,3-diaminopropane (SP|P44951) biosynthesis. The family
TIGR00709 previously included both groups but has now
been revised to exclude the ectoine biosynthesis
proteins of this family. Ectoine is a compatible solute
particularly effective in conferring salt tolerance
[Cellular processes, Adaptations to atypical
conditions].
Length = 412
Score = 40.0 bits (94), Expect = 6e-04
Identities = 41/155 (26%), Positives = 66/155 (42%), Gaps = 29/155 (18%)
Query: 61 PADKYPDEDLGVKYAQDVQDLIEAM-GRNGK---RPCAFFAESLQSCGGQIIPPANYLRE 116
P D Y D+ D E + + P A E++Q GG + +L+
Sbjct: 166 PYDGYLGGDV------DTIAYFEKLLEDSSSGVDLPAAVILETVQGEGGINVASDEWLQR 219
Query: 117 VYK------------HVQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPM-GNGHPVAAVI 163
+ K +Q G GR GT +++F+ G I PDIV + K + G G P+A +
Sbjct: 220 LEKLCRRHDILLIVDDIQAGCGRTGT-FFSFEPAG--IEPDIVCLSKSISGYGLPLALTL 276
Query: 164 TTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVME 198
E+ + G E+ T+ GN ++ A A +E
Sbjct: 277 IKPELDV--WKPG-EHNGTFRGNNLAFVTATAALE 308
>gnl|CDD|129782 TIGR00699, GABAtrns_euk, 4-aminobutyrate aminotransferase,
eukaryotic type. This enzyme is a class III
pyridoxal-phosphate-dependent aminotransferase. This
model describes known eukaryotic examples of the enzyme.
The degree of sequence difference between this set and
known bacterial examples is greater than the distance
between either set the most similar enzyme with distinct
function, and so separate models are built for
prokaryotic and eukaryotic sets. Alternate names include
GABA transaminase, gamma-amino-N-butyrate transaminase,
and beta-alanine--oxoglutarate aminotransferase [Central
intermediary metabolism, Other].
Length = 464
Score = 39.8 bits (93), Expect = 6e-04
Identities = 45/179 (25%), Positives = 80/179 (44%), Gaps = 31/179 (17%)
Query: 60 YPADKYPDEDLGVKYAQDVQ---DLIEAMGRNGKRPCA-FFAESLQSCGGQIIPPANYLR 115
+P+ KYP E+ + A++ Q + +E + + +P A E +QS GG ++ R
Sbjct: 216 FPSLKYPLEEHVKENAKEEQRCLEEVEDLIKKWHKPVAAIIVEPIQSEGGDNHASPDFFR 275
Query: 116 EV----YKH--------VQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNG----HPV 159
++ KH VQ G G G +WA + D PD+VT K H
Sbjct: 276 KLRDITKKHNVAFIVDEVQTGVGATGK-FWAHEHWNLDDPPDMVTFSKKFQTAGYFFHDP 334
Query: 160 AAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLETENLREHALDVGNQLHT 218
A K +++ FNT+ G+P + +++ ++ ++L E+ VG+ L+T
Sbjct: 335 AFRPN-----KPYRQ-----FNTWMGDPSRALILREIIQEIKRKDLLENVAHVGDYLYT 383
>gnl|CDD|236437 PRK09264, PRK09264, diaminobutyrate--2-oxoglutarate
aminotransferase; Validated.
Length = 425
Score = 39.0 bits (92), Expect = 0.001
Identities = 35/119 (29%), Positives = 50/119 (42%), Gaps = 26/119 (21%)
Query: 61 PADKYPDEDLGVKYAQDVQDLIEAM-GRNG---KRPCAFFAESLQSCGGQIIPPANYLRE 116
P D Y D+ D +E + + P A E++Q GG + A +L+
Sbjct: 170 PYDGYFGGDV------DTLAYLEKLLEDSSSGVDLPAAVIVETVQGEGGINVASAEWLQR 223
Query: 117 V----YKH--------VQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPM-GNGHPVAAV 162
+ KH +Q G GR GT F + I PDIVT+ K + G G P+A V
Sbjct: 224 LAKLCRKHDILLIVDDIQAGCGRTGTF---FSFERAGITPDIVTLSKSISGYGLPMALV 279
>gnl|CDD|235917 PRK07046, PRK07046, aminotransferase; Validated.
Length = 453
Score = 34.2 bits (79), Expect = 0.040
Identities = 22/82 (26%), Positives = 35/82 (42%), Gaps = 11/82 (13%)
Query: 144 PDIVTVGKPMGNGHPVAAVITTKEIAKSFQE---------TGVEYFNTYGGNPVSCAVAN 194
PD + VGKP+ G P A + E+A+ Q +G+ T N ++ A
Sbjct: 278 PDFLVVGKPIAGGVPCAVYGFSAELAERAQAAKASAPPGHSGIG--TTLSANALAMAAMR 335
Query: 195 AVMEVLETENLREHALDVGNQL 216
A + + TE H L + +L
Sbjct: 336 ATLAEVMTEAAYAHMLALAARL 357
>gnl|CDD|178100 PLN02482, PLN02482, glutamate-1-semialdehyde 2,1-aminomutase.
Length = 474
Score = 33.6 bits (77), Expect = 0.079
Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 142 IIPDIVTVGKPMGNGHPVAAVITTKEIAKSFQETGVEY-FNTYGGNPVS 189
I PD+ T+GK +G G PV A +EI + G Y T GNP++
Sbjct: 305 ITPDLTTLGKVIGGGLPVGAYGGRREIMEMVAPAGPMYQAGTLSGNPLA 353
>gnl|CDD|226045 COG3514, COG3514, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 93
Score = 27.5 bits (61), Expect = 2.4
Identities = 20/68 (29%), Positives = 28/68 (41%), Gaps = 9/68 (13%)
Query: 30 PATSEAQHVITRPPVRMST-----EAPC-PDVYRGKYPADKYPDEDLGVKYAQDVQDLIE 83
P S +H +P R S EAP PD RG+ + P E + ++ DV +E
Sbjct: 12 PELSSQEHARLKPARRPSDPEIDYEAPFKPDRKRGRPVREPNPKELVSLRIDADV---LE 68
Query: 84 AMGRNGKR 91
GK
Sbjct: 69 KFRAGGKG 76
>gnl|CDD|191263 pfam05368, NmrA, NmrA-like family. NmrA is a negative
transcriptional regulator involved in the
post-translational modification of the transcription
factor AreA. NmrA is part of a system controlling
nitrogen metabolite repression in fungi. This family
only contains a few sequences as iteration results in
significant matches to other Rossmann fold families.
Length = 232
Score = 28.4 bits (64), Expect = 2.8
Identities = 12/25 (48%), Positives = 16/25 (64%), Gaps = 2/25 (8%)
Query: 156 GHPVAAVI--TTKEIAKSFQETGVE 178
GHPV A++ E+AKS + GVE
Sbjct: 22 GHPVRALVRDPKSELAKSLKAAGVE 46
>gnl|CDD|226909 COG4533, COG4533, ABC-type uncharacterized transport system,
periplasmic component [General function prediction
only].
Length = 564
Score = 28.5 bits (64), Expect = 2.9
Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 3/65 (4%)
Query: 157 HPVAAVITTKEIAKSFQETGVEY--FNTYGGNPVSCAVANAVMEVLETENLREHALDVGN 214
H V + ++ +S E G + ++ G P A A+ E+L NL HAL+
Sbjct: 321 HQVK-IQPEEKERESRLEEGCYFLLLDSRKGRPADQAQRRALRELLSPTNLLLHALEGYA 379
Query: 215 QLHTP 219
QL P
Sbjct: 380 QLWFP 384
>gnl|CDD|226972 COG4624, COG4624, Iron only hydrogenase large subunit, C-terminal
domain [General function prediction only].
Length = 411
Score = 28.6 bits (64), Expect = 2.9
Identities = 8/30 (26%), Positives = 17/30 (56%)
Query: 150 GKPMGNGHPVAAVITTKEIAKSFQETGVEY 179
+ NG + V+TT+E+ K +E +++
Sbjct: 210 DRDEDNGRAIDFVLTTRELVKMLKELRIDF 239
>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional.
Length = 471
Score = 28.1 bits (63), Expect = 4.1
Identities = 11/51 (21%), Positives = 18/51 (35%), Gaps = 9/51 (17%)
Query: 154 GNGHPVAAVITTK----EIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVL 200
NG V A + +A + + GG+ S A V +V+
Sbjct: 301 NNGRAVRAALAKNPSAETVAATL-----NTASVAGGDIPSDATRLCVAKVV 346
>gnl|CDD|216371 pfam01222, ERG4_ERG24, Ergosterol biosynthesis ERG4/ERG24 family.
Length = 429
Score = 27.8 bits (62), Expect = 5.2
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 128 VGTHWWAFQLQGDDIIPDIVTVGKPMGNG 156
V W+ FQ +P V G P+ NG
Sbjct: 73 VFLLWYFFQAVFYLTLPGKVVEGLPLSNG 101
>gnl|CDD|237562 PRK13927, PRK13927, rod shape-determining protein MreB;
Provisional.
Length = 334
Score = 27.7 bits (63), Expect = 5.2
Identities = 16/62 (25%), Positives = 27/62 (43%), Gaps = 13/62 (20%)
Query: 140 DDIIPDIVTVGKPMGNGHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEV 199
D + ++ G+ + G P I++ EI ++ QE P+S A+ AV
Sbjct: 217 GDEVLEMEVRGRDLVTGLPKTITISSNEIREALQE------------PLS-AIVEAVKVA 263
Query: 200 LE 201
LE
Sbjct: 264 LE 265
>gnl|CDD|100024 cd06060, misato, Human Misato shows similarity with Tubulin/FtsZ
family of GTPases and is localized to the the outer
membrane of mitochondria. It has a role in mitochondrial
fusion and in mitochondrial distribution and morphology.
Mutations in its Drosophila homolog (misato) lead to
irregular chromosome segregation during mitosis.
Deletion of the budding yeast homolog DML1 is lethal and
unregulate expression of DML1 leads to mitochondrial
dispersion and abnormalities in cell morphology. The
Misato/DML1 protein family is conserved from yeast to
human, but its exact function is still unknown.
Length = 493
Score = 27.7 bits (62), Expect = 6.0
Identities = 12/24 (50%), Positives = 14/24 (58%), Gaps = 3/24 (12%)
Query: 115 REVYKHVQVGF--GRVGTHWWAFQ 136
REV +Q+G VGTHWW Q
Sbjct: 1 REVLT-LQLGHYANFVGTHWWNLQ 23
>gnl|CDD|164495 CHL00091, apcE, phycobillisome linker protein.
Length = 877
Score = 27.5 bits (61), Expect = 7.6
Identities = 11/32 (34%), Positives = 14/32 (43%)
Query: 159 VAAVITTKEIAKSFQETGVEYFNTYGGNPVSC 190
V A++ +KE A F E V Y G C
Sbjct: 371 VDALLNSKEYADYFGEETVPYLRQLGEEAQEC 402
>gnl|CDD|233737 TIGR02123, TRAP_fused, TRAP transporter, 4TM/12TM fusion protein.
In some species, the 12-transmembrane spanning and
4-transmembrane spanning components of tripartite
ATP-independent periplasmic (TRAP)-type transporters are
fused. This model describes such transporters, found in
the Archaea and in Bacteria [Transport and binding
proteins, Unknown substrate].
Length = 613
Score = 27.2 bits (61), Expect = 9.1
Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 5/32 (15%)
Query: 82 IEAMGRNGKRPCAFFA---ESLQSCGGQIIPP 110
I M R G +P FA E+ S GGQI+PP
Sbjct: 235 IPLMKRAGYKP--EFAGAVEAAASTGGQIMPP 264
>gnl|CDD|180740 PRK06886, PRK06886, hypothetical protein; Validated.
Length = 329
Score = 26.7 bits (59), Expect = 9.3
Identities = 17/56 (30%), Positives = 23/56 (41%), Gaps = 4/56 (7%)
Query: 65 YPDEDLGVKYAQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVYKH 120
ED +++Q IE M G F + C + I A+ REVYKH
Sbjct: 62 STVEDYYARFSQA----IELMISQGVTAFGTFVDIDPICEDRAIIAAHKAREVYKH 113
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.137 0.420
Gapped
Lambda K H
0.267 0.0752 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 11,587,031
Number of extensions: 1088276
Number of successful extensions: 1294
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1148
Number of HSP's successfully gapped: 137
Length of query: 224
Length of database: 10,937,602
Length adjustment: 93
Effective length of query: 131
Effective length of database: 6,812,680
Effective search space: 892461080
Effective search space used: 892461080
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (25.7 bits)