RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6205
(224 letters)
>1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase;
HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP:
c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A*
1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A*
1d7r_A* 1d7v_A* 1z3z_A*
Length = 433
Score = 170 bits (433), Expect = 4e-51
Identities = 50/180 (27%), Positives = 82/180 (45%), Gaps = 20/180 (11%)
Query: 50 APCPDVYRGKYPADKYPDEDLGVKYAQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIP 109
P P YR ++ + D + DLI+ AF AE + S GG I
Sbjct: 167 IPAPFTYRPRFERNGAYD---YLAELDYAFDLIDRQS--SGNLAAFIAEPILSSGGIIEL 221
Query: 110 PANYLREVYKH------------VQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNGH 157
P Y+ + + Q G GR G +A Q D + PDI+T+ K +G G
Sbjct: 222 PDGYMAALKRKCEARGMLLILDEAQTGVGRTG-TMFACQ--RDGVTPDILTLSKTLGAGL 278
Query: 158 PVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLETENLREHALDVGNQLH 217
P+AA++T+ I + E G ++ T+ +P+ AV V++V++ + L A +G++L
Sbjct: 279 PLAAIVTSAAIEERAHELGYLFYTTHVSDPLPAAVGLRVLDVVQRDGLVARANVMGDRLR 338
Score = 59.1 bits (144), Expect = 1e-10
Identities = 18/41 (43%), Positives = 23/41 (56%)
Query: 1 MARYPLIGDVRGIGLFVGVELVTCRKQKTPATSEAQHVITR 41
M R+ IGDVRG GL +GVE+V R+ K PA +
Sbjct: 345 MERFDCIGDVRGRGLLLGVEIVKDRRTKEPADGLGAKITRE 385
>3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1,
pyridoxal-5'-phosphate dependent racemase, pyrid
phosphate, isomerase; HET: PLP; 2.21A {Achromobacter
obae} PDB: 2zuk_A* 3dxw_A*
Length = 439
Score = 151 bits (384), Expect = 7e-44
Identities = 52/179 (29%), Positives = 78/179 (43%), Gaps = 24/179 (13%)
Query: 53 PDVYRGKYPADKY---PDEDLGVKYAQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIP 109
+ YP D Y ++ G + + + A+ A F E +QS GG I+P
Sbjct: 163 DGLILLPYP-DPYRPYRNDPTGDAILTLLTEKLAAVP--AGSIGAAFIEPIQSDGGLIVP 219
Query: 110 PANYLREVY----KH--------VQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNGH 157
P +LR+ H V+VG R G F+ +G +PDI+ +GK +G G
Sbjct: 220 PDGFLRKFADICRAHGILVVCDEVKVGLARSG-RLHCFEHEG--FVPDILVLGKGLGGGL 276
Query: 158 PVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLETENLREHALDVGNQL 216
P++AVI EI T GNP+S A AV+E ++ ++L A G L
Sbjct: 277 PLSAVIAPAEILDCASAF---AMQTLHGNPISAAAGLAVLETIDRDDLPAMAERKGRLL 332
Score = 56.8 bits (138), Expect = 9e-10
Identities = 20/41 (48%), Positives = 27/41 (65%)
Query: 1 MARYPLIGDVRGIGLFVGVELVTCRKQKTPATSEAQHVITR 41
R+PLIGD+RG GL G+ELV R+ + PA +E +I R
Sbjct: 340 AKRHPLIGDIRGRGLACGMELVCDRQSREPARAETAKLIYR 380
>3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr;
aminotransferase, csgid; 2.05A {Bacillus anthracis}
Length = 452
Score = 138 bits (350), Expect = 6e-39
Identities = 54/198 (27%), Positives = 91/198 (45%), Gaps = 25/198 (12%)
Query: 37 HVITRPPVRMSTEAPCPDVYRGKYPADKYPDEDLGVKYAQDVQDLIEAMGRNGKRPCAFF 96
P PD YR + V+ ++V ++ AF
Sbjct: 166 RYQYEPFASGFLHVTPPDCYRMPGIER---ENIYDVECVKEVDRVMTWELSE--TIAAFI 220
Query: 97 AESLQSCGGQIIPPANYLREVY----KH--------VQVGFGRVGTHWWAFQLQGDDIIP 144
E + + GG ++ P +Y++ V+ KH V GFGR G + F D+ P
Sbjct: 221 MEPIITGGGILMAPQDYMKAVHETCQKHGALLISDEVICGFGRTG-KAFGFMN--YDVKP 277
Query: 145 DIVTVGKPMGNGH-PVAAVITTKEIAKSFQETG-VEYFN---TYGGNPVSCAVANAVMEV 199
DI+T+ K + + + P++A +EI ++F+ G E+F T+GGNP +CA+A +E+
Sbjct: 278 DIITMAKGITSAYLPLSATAVKREIYEAFKGKGEYEFFRHINTFGGNPAACALALKNLEI 337
Query: 200 LETENLREHALDVGNQLH 217
+E ENL E + +G+ L
Sbjct: 338 IENENLIERSAQMGSLLL 355
Score = 48.7 bits (117), Expect = 4e-07
Identities = 15/41 (36%), Positives = 25/41 (60%)
Query: 1 MARYPLIGDVRGIGLFVGVELVTCRKQKTPATSEAQHVITR 41
+ +PL+GD+RG GL VG+ELV ++ K P ++ +
Sbjct: 362 IGEHPLVGDIRGKGLLVGIELVNDKETKEPIDNDKIASVVN 402
>1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A
{Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A*
1szu_A* 1szs_A*
Length = 426
Score = 136 bits (346), Expect = 2e-38
Identities = 50/176 (28%), Positives = 72/176 (40%), Gaps = 20/176 (11%)
Query: 53 PDVYRGKYPADKYPDEDLGVKYAQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPAN 112
VYR YP P + A I + A E +Q GG
Sbjct: 164 GHVYRALYP---CPLHGISEDDAIASIHRIFKNDAAPEDIAAIVIEPVQGEGGFYASSPA 220
Query: 113 YLREVYK----H--------VQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNGHPVA 160
+++ + H VQ G GR GT +A + G + PD+ T K + G P+A
Sbjct: 221 FMQRLRALCDEHGIMLIADEVQSGAGRTGT-LFAMEQMG--VAPDLTTFAKSIAGGFPLA 277
Query: 161 AVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLETENLREHALDVGNQL 216
V E+ + G TY GNP++C A V++V E ENL + A D+G +L
Sbjct: 278 GVTGRAEVMDAVAPGG--LGGTYAGNPIACVAALEVLKVFEQENLLQKANDLGQKL 331
Score = 53.3 bits (129), Expect = 1e-08
Identities = 12/40 (30%), Positives = 19/40 (47%)
Query: 2 ARYPLIGDVRGIGLFVGVELVTCRKQKTPATSEAQHVITR 41
++P IGDVRG+G + +EL P ++ R
Sbjct: 340 EKHPEIGDVRGLGAMIAIELFEDGDHNKPDAKLTAEIVAR 379
>3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle
structural genomics center for infectious disease; HET:
LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A
Length = 451
Score = 136 bits (344), Expect = 4e-38
Identities = 50/182 (27%), Positives = 78/182 (42%), Gaps = 24/182 (13%)
Query: 53 PDVYRGKYPADKYPDEDLGVKYAQDVQDLIEAMGR------NGKRPCAFFAESLQSCGGQ 106
P++YR + D + G + A D + + A E +Q GG
Sbjct: 184 PEIYRAPLS-YPFRDAEFGKELATDGELAAKRAITVIDKQIGADNLAAVVIEPIQGEGGF 242
Query: 107 IIPPANYLREVYK----H--------VQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMG 154
I+P +L + + VQ GF R G +A + +G I PD++ K +
Sbjct: 243 IVPADGFLPTLLDWCRKNDVVFIADEVQTGFARTGA-MFACEHEG--IDPDLIVTAKGIA 299
Query: 155 NGHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLETENLREHALDVGN 214
G P++AV EI S +G TYGGNP++CA A A +E +E+E L A +
Sbjct: 300 GGLPLSAVTGRAEIMDSPHVSG--LGGTYGGNPIACAAALATIETIESEGLVARAQQIEK 357
Query: 215 QL 216
+
Sbjct: 358 IM 359
Score = 49.9 bits (120), Expect = 2e-07
Identities = 12/40 (30%), Positives = 16/40 (40%), Gaps = 1/40 (2%)
Query: 2 ARYPLIGDVRGIGLFVGVELVTCRKQKTPATSEAQHVITR 41
A IGDVRG G + +ELV P + +
Sbjct: 368 AEDDRIGDVRGRGAMIAMELVK-AGTTEPDADLTKALCAG 406
>3nui_A Pyruvate transaminase; amino transferase, transferase; 2.00A
{Vibrio fluvialis}
Length = 478
Score = 133 bits (338), Expect = 4e-37
Identities = 51/205 (24%), Positives = 86/205 (41%), Gaps = 25/205 (12%)
Query: 31 ATSEAQHVITRPPVRMSTEAPCPDVYRGKYPADKYPDEDLGVKYAQDVQDLIEAMGRNGK 90
T + + + P+ CP +R Y + +E + A+++++ I+ G +
Sbjct: 174 MTGKPYNSVFGLPLPGFVHLTCPHYWR--YGEEGETEEQFVARLARELEETIQREGAD-- 229
Query: 91 RPCAFFAESLQSCGGQIIPPANYLREVY----KH--------VQVGFGRVGTHWWAFQLQ 138
FFAE + GG I P Y + + K+ V GFGR G + W
Sbjct: 230 TIAGFFAEPVMGAGGVIPPAKGYFQAILPILRKYDIPVISDEVICGFGRTG-NTWGCVT- 287
Query: 139 GDDIIPDIVTVGKPMGNGH-PVAAVITTKEIAKSFQE--TGVEYFN---TYGGNPVSCAV 192
D PD + K + G P+ AVI E++K + +E F T G+PV CA+
Sbjct: 288 -YDFTPDAIISSKNLTAGFFPMGAVILGPELSKRLETAIEAIEEFPHGFTASGHPVGCAI 346
Query: 193 ANAVMEVLETENLREHALDVGNQLH 217
A ++V+ E L E+ + +
Sbjct: 347 ALKAIDVVMNEGLAENVRRLAPRFE 371
Score = 45.3 bits (108), Expect = 7e-06
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 1 MARYPLIGDVRGIGLFVGVELVTCRKQKTP 30
+A P IG+ RGIG +E V + KTP
Sbjct: 377 IAERPNIGEYRGIGFMWALEAVKDKASKTP 406
>4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics,
niaid, national institute of allergy AN infectious
diseases; HET: LLP; 1.80A {Mycobacterium abscessus}
Length = 453
Score = 132 bits (334), Expect = 2e-36
Identities = 52/177 (29%), Positives = 78/177 (44%), Gaps = 19/177 (10%)
Query: 53 PDVYRGKYP-ADKYPDEDLGVKYAQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPA 111
P+VYR + G + A+ IE + A E +Q GG I+P
Sbjct: 187 PEVYRMPASYPLRDEPGLTGEEAARRAISRIETQ-IGAQSLAAIIIEPIQGEGGFIVPAP 245
Query: 112 NYLREVYK----H--------VQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNGHPV 159
+L + + VQ GF R G W+A + +G I+PDIVT+ K + G P+
Sbjct: 246 GFLATLTAWASENGVVFIADEVQTGFARTG-AWFASEHEG--IVPDIVTMAKGIAGGMPL 302
Query: 160 AAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLETENLREHALDVGNQL 216
+AV E+ + G TYGGNPV+CA A A + V+ +L A + +
Sbjct: 303 SAVTGRAELMDAVYAGG--LGGTYGGNPVTCAAAVAALGVMRELDLPARARAIEASV 357
Score = 48.4 bits (116), Expect = 6e-07
Identities = 9/40 (22%), Positives = 17/40 (42%), Gaps = 1/40 (2%)
Query: 2 ARYPLIGDVRGIGLFVGVELVTCRKQKTPATSEAQHVITR 41
+IG+VRG G + +E+V P + + +
Sbjct: 366 EEVDIIGEVRGRGAMLAIEIVK-PGTLEPDAALTKSIAAE 404
>3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent
transferase-like fold, ST genomics, joint center for
structural genomics, JCSG; HET: MSE LLP PLP; 1.55A
{Mesorhizobium loti} PDB: 3fcr_A*
Length = 460
Score = 130 bits (329), Expect = 7e-36
Identities = 41/194 (21%), Positives = 75/194 (38%), Gaps = 25/194 (12%)
Query: 42 PPVRMSTEAPCPDVYRGKYPADKYPDEDLGVKYAQDVQDLIEAMGRNGKRPCAFFAESLQ 101
P P +R +E A ++++I A G AF E +
Sbjct: 176 LPRAPVLHTEAPYYFR--RTDRSMSEEQFSQHCADKLEEMILAEGPE--TIAAFIGEPIL 231
Query: 102 SCGGQIIPPANYLREVY----KH--------VQVGFGRVGTHWWAFQLQGDDIIPDIVTV 149
GG + PPA Y ++ K+ V GFGR+G + I PD++T+
Sbjct: 232 GTGGIVPPPAGYWEKIQAVLKKYDVLLVADEVVTGFGRLG-TMFGSDH--YGIKPDLITI 288
Query: 150 GKPMGNGH-PVAAVITTKEIAKSFQE--TGVEYFN---TYGGNPVSCAVANAVMEVLETE 203
K + + + P++ VI + + + + TY +P+ A A +E+++
Sbjct: 289 AKGLTSAYAPLSGVIVADRVWQVLVQGSDKLGSLGHGWTYSAHPICVAAGVANLELIDEM 348
Query: 204 NLREHALDVGNQLH 217
+L +A + G
Sbjct: 349 DLVTNAGETGAYFR 362
Score = 46.4 bits (111), Expect = 3e-06
Identities = 8/30 (26%), Positives = 15/30 (50%)
Query: 1 MARYPLIGDVRGIGLFVGVELVTCRKQKTP 30
+ + +G+VRG G+ VE V + +
Sbjct: 369 VGGHKNVGEVRGDGMLAAVEFVADKDDRVF 398
>2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal
phosphate, PLP, RV3290C, lysine amino transferase; HET:
PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A*
2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A
Length = 449
Score = 129 bits (327), Expect = 1e-35
Identities = 40/176 (22%), Positives = 59/176 (33%), Gaps = 16/176 (9%)
Query: 53 PDVYRGKYPADKYPDEDLGVKYAQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPAN 112
Y + + A+ ++ A F AE +Q GG
Sbjct: 193 WPRIDAPYMRPGLDEPAMAALEAEALRQARAAFETRPHDIACFVAEPIQGEGGDRHFRPE 252
Query: 113 YLREVY----KH--------VQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNGHPVA 160
+ + + VQ G G GT WA+Q + PDIV GK +A
Sbjct: 253 FFAAMRELCDEFDALLIFDEVQTGCGLTGT-AWAYQQLD--VAPDIVAFGKKTQVCGVMA 309
Query: 161 AVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLETENLREHALDVGNQL 216
+ F +T+GGN A ++EV+E E L E A+ G L
Sbjct: 310 GRRVDEVADNVFAVPS-RLNSTWGGNLTDMVRARRILEVIEAEGLFERAVQHGKYL 364
Score = 36.1 bits (84), Expect = 0.007
Identities = 9/23 (39%), Positives = 12/23 (52%), Gaps = 1/23 (4%)
Query: 2 ARYP-LIGDVRGIGLFVGVELVT 23
A +P ++ D RG GL L T
Sbjct: 373 ADFPAVVLDPRGRGLMCAFSLPT 395
>3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet,
transaminase, pyridox phosphate; HET: PLP; 1.40A
{Pseudomonas putida}
Length = 449
Score = 126 bits (319), Expect = 2e-34
Identities = 52/201 (25%), Positives = 84/201 (41%), Gaps = 27/201 (13%)
Query: 37 HVITRPPVRMSTEAPCPDVYRGKYPADKYPDEDLGVKYAQDVQDLIEAMGRNGKRPCAFF 96
+ P++ P + Y ++ G+ A ++ LIE A F
Sbjct: 169 RKLFGQPMQDVDHLPHTLLASNAYSRGM--PKEGGIALADELLKLIELHD--ASNIAAVF 224
Query: 97 AESLQSCGGQIIPPANYLREVY----KH--------VQVGFGRVGTHWWAFQLQGDDIIP 144
E L G ++PP YL+ +H V GFGR G + G + P
Sbjct: 225 VEPLAGSAGVLVPPEGYLKRNREICNQHNILLVFDEVITGFGRTG-SMFGADSFG--VTP 281
Query: 145 DIVTVGKPMGNGH-PVAAVITTKEIAKSF-----QETGVEYFN--TYGGNPVSCAVANAV 196
D++ + K + NG P+ AVI + EI ++F E VE+ + TY +PV+CA A
Sbjct: 282 DLMCIAKQVTNGAIPMGAVIASTEIYQTFMNQPTPEYAVEFPHGYTYSAHPVACAAGLAA 341
Query: 197 MEVLETENLREHALDVGNQLH 217
+ +L+ ENL + +V
Sbjct: 342 LCLLQKENLVQSVAEVAPHFE 362
Score = 42.9 bits (102), Expect = 4e-05
Identities = 7/48 (14%), Positives = 13/48 (27%), Gaps = 6/48 (12%)
Query: 1 MARYPLIGDVRGIGLFVGVELVTCRKQKTPATSEAQH------VITRP 42
+ + D+R GL +++ EA R
Sbjct: 368 IKGAKNVIDIRNFGLAGAIQIAPRDGDAIVRPFEAGMALWKAGFYVRF 415
>2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural
genomics, NPPSFA, N project on protein structural and
functional analyses; HET: PLP; 1.90A {Sulfolobus
tokodaii}
Length = 419
Score = 124 bits (313), Expect = 9e-34
Identities = 47/181 (25%), Positives = 84/181 (46%), Gaps = 23/181 (12%)
Query: 50 APCPDVYRGKYPADKYPDEDLGVKYAQD-VQDLIEAMGRNGKRPCAFFAESLQSCGGQII 108
P P+ YR + + Y + V + ++D I + F E +Q GG +I
Sbjct: 170 VPYPNPYRNPWHINGYENPSELVNRVIEFIEDYIFVNLVPPEEVAGIFFEPIQGEGGYVI 229
Query: 109 PPANYLREVYK----H--------VQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNG 156
PP N+ E+ K + VQ+G GR G +A + +PD++T+ K +G G
Sbjct: 230 PPKNFFAELQKLAKKYGILLVDDEVQMGLGRTGK-LFAIENFN--TVPDVITLAKALGGG 286
Query: 157 H-PVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLETENLREHALDVGNQ 215
P+ A I K++ NT+GGN ++CA+ + V++++ ++L H ++G
Sbjct: 287 IMPIGATIFRKDLDFKPGMHS----NTFGGNALACAIGSKVIDIV--KDLLPHVNEIGKI 340
Query: 216 L 216
Sbjct: 341 F 341
Score = 35.6 bits (83), Expect = 0.008
Identities = 10/17 (58%), Positives = 11/17 (64%)
Query: 6 LIGDVRGIGLFVGVELV 22
L DVRGIGL G+E
Sbjct: 348 LADDVRGIGLAWGLEYN 364
>1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken
structural genomics/proteomics initiative, RSGI,
structural genomics; HET: PLP; 1.35A {Thermus
thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A*
Length = 395
Score = 123 bits (311), Expect = 1e-33
Identities = 45/162 (27%), Positives = 70/162 (43%), Gaps = 26/162 (16%)
Query: 71 GVKYAQ--DVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVYK----H---- 120
V++ DV+ L A+ A E +Q GG +LR +
Sbjct: 166 PVEFIPYNDVEALKRAVDEE---TAAVILEPVQGEGGVRPATPEFLRAAREITQEKGALL 222
Query: 121 ----VQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNGHPVAAVITTKEIAKSFQ--E 174
+Q G GR G +AF+ I+PDI+T+ K +G G P+ + +E+A+S
Sbjct: 223 ILDEIQTGMGRTG-KRFAFE--HFGIVPDILTLAKALGGGVPLGVAVMREEVARSMPKGG 279
Query: 175 TGVEYFNTYGGNPVSCAVANAVMEVLETENLREHALDVGNQL 216
G T+GGNP++ A A + LE L E A ++G
Sbjct: 280 HG----TTFGGNPLAMAAGVAAIRYLERTRLWERAAELGPWF 317
Score = 31.7 bits (73), Expect = 0.16
Identities = 11/17 (64%), Positives = 14/17 (82%)
Query: 5 PLIGDVRGIGLFVGVEL 21
P I +VRG+GL VG+EL
Sbjct: 327 PKIREVRGMGLMVGLEL 343
>1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN
acid, antiepileptic drug target; HET: PLP; 2.3A {Sus
scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A*
Length = 472
Score = 124 bits (314), Expect = 1e-33
Identities = 45/183 (24%), Positives = 72/183 (39%), Gaps = 29/183 (15%)
Query: 53 PDVYRGKYPADKYPDEDLGVKYAQ-------DVQDLIEAMGRNGKRPCAFFAESLQSCGG 105
+ +P KYP E+ + Q +V+DLI + K E +QS GG
Sbjct: 215 WPIAP--FPRLKYPLEEFVKENQQEEARCLEEVEDLIVKYRKKKKTVAGIIVEPIQSEGG 272
Query: 106 QIIPPANYLREVY----KH--------VQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPM 153
++ R++ KH VQ G G G +WA + G D D++T K M
Sbjct: 273 DNHASDDFFRKLRDISRKHGCAFLVDEVQTGGGSTGK-FWAHEHWGLDDPADVMTFSKKM 331
Query: 154 GNGHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLETENLREHALDVG 213
G E + + FNT+ G+P + V+ +++ E+L +A G
Sbjct: 332 MTGGFFHK-----EEFRPNAPYRI--FNTWLGDPSKNLLLAEVINIIKREDLLSNAAHAG 384
Query: 214 NQL 216
L
Sbjct: 385 KVL 387
Score = 37.3 bits (87), Expect = 0.003
Identities = 10/23 (43%), Positives = 11/23 (47%), Gaps = 1/23 (4%)
Query: 2 ARYP-LIGDVRGIGLFVGVELVT 23
ARYP I VRG G F +
Sbjct: 396 ARYPQFISRVRGRGTFCSFDTPD 418
>3hmu_A Aminotransferase, class III; structural genomics, pyridoxal
phosphate, PSI-2, protein structure initiative; 2.10A
{Silicibacter pomeroyi}
Length = 472
Score = 124 bits (313), Expect = 2e-33
Identities = 52/179 (29%), Positives = 85/179 (47%), Gaps = 21/179 (11%)
Query: 51 PCPDVYRGKYPADKYPDEDLGVKYAQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPP 110
P+ + D E+ G+ A+++++ I +G R AF AE +Q GG I+ P
Sbjct: 188 NQPNWWAEGGDMD---PEEFGLARARELEEAILELG--ENRVAAFIAEPVQGAGGVIVAP 242
Query: 111 ANYLREVY----KH--------VQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNGH- 157
+Y E+ K+ V GFGR G +W+ Q I P I+T+ K + +G+
Sbjct: 243 DSYWPEIQRICDKYDILLIADEVICGFGRTG-NWFGTQT--MGIRPHIMTIAKGLSSGYA 299
Query: 158 PVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLETENLREHALDVGNQL 216
P+ I E+A + + TY G+PV+ AVA + +LE EN+ +H +V
Sbjct: 300 PIGGSIVCDEVAHVIGKDEFNHGYTYSGHPVAAAVALENLRILEEENILDHVRNVAAPY 358
Score = 44.5 bits (106), Expect = 1e-05
Identities = 7/41 (17%), Positives = 18/41 (43%)
Query: 1 MARYPLIGDVRGIGLFVGVELVTCRKQKTPATSEAQHVITR 41
+ +PL+G+ + +G+ + L + + SE +
Sbjct: 366 LTDHPLVGEAKIVGMMASIALTPNKASRAKFASEPGTIGYI 406
>2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent
ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens}
SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A*
2can_A*
Length = 439
Score = 123 bits (311), Expect = 2e-33
Identities = 54/156 (34%), Positives = 77/156 (49%), Gaps = 24/156 (15%)
Query: 77 DVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVY----KH--------VQVG 124
D+ L A+ AF E +Q G ++P YL V +H +Q G
Sbjct: 211 DLPALERAL--QDPNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTG 268
Query: 125 FGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNG-HPVAAVITTKEIAKSFQ--ETGVEYFN 181
R G W A +++ PDIV +GK + G +PV+AV+ +I + + E G +
Sbjct: 269 LARTGR-WLAVD--YENVRPDIVLLGKALSGGLYPVSAVLCDDDIMLTIKPGEHG----S 321
Query: 182 TYGGNPVSCAVANAVMEVLETENLREHALDVGNQLH 217
TYGGNP+ C VA A +EVLE ENL E+A +G L
Sbjct: 322 TYGGNPLGCRVAIAALEVLEEENLAENADKLGIILR 357
Score = 29.5 bits (67), Expect = 0.89
Identities = 5/17 (29%), Positives = 9/17 (52%)
Query: 5 PLIGDVRGIGLFVGVEL 21
++ VRG GL + +
Sbjct: 366 DVVTAVRGKGLLNAIVI 382
>1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC,
malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4
PDB: 3lg0_A 3ntj_A
Length = 433
Score = 123 bits (310), Expect = 2e-33
Identities = 48/156 (30%), Positives = 74/156 (47%), Gaps = 24/156 (15%)
Query: 77 DVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVY----KH--------VQVG 124
D++ L E + CAF E +Q G I+P NYL+ VY K+ VQ G
Sbjct: 200 DLEALEEEL--KDPNVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTG 257
Query: 125 FGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNGH-PVAAVITTKEIAKSFQ--ETGVEYFN 181
GR G ++ PD++ +GK + GH P++AV+ +I + E G +
Sbjct: 258 LGRTGK-LLCVH--HYNVKPDVILLGKALSGGHYPISAVLANDDIMLVIKPGEHG----S 310
Query: 182 TYGGNPVSCAVANAVMEVLETENLREHALDVGNQLH 217
TYGGNP++ ++ + VL E L E+A +G
Sbjct: 311 TYGGNPLAASICVEALNVLINEKLCENAEKLGGPFL 346
Score = 33.0 bits (76), Expect = 0.076
Identities = 7/20 (35%), Positives = 10/20 (50%)
Query: 2 ARYPLIGDVRGIGLFVGVEL 21
++ DVRG GL +E
Sbjct: 354 KDSKIVRDVRGKGLLCAIEF 373
>3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for
structural genomics O infectious diseases, alpha and
beta protein; HET: LLP; 2.65A {Bacillus anthracis}
Length = 392
Score = 121 bits (306), Expect = 6e-33
Identities = 51/156 (32%), Positives = 77/156 (49%), Gaps = 25/156 (16%)
Query: 77 DVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVY----KH--------VQVG 124
D++ L A+ N AF E +Q G IPPA +L+E K +Q G
Sbjct: 171 DLEALKAAITPN---TAAFILEPIQGEAGINIPPAGFLKEALEVCKKENVLFVADEIQTG 227
Query: 125 FGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNG-HPVAAVITTKEIAKSFQ--ETGVEYFN 181
GR G +A + PD+ +GK +G G P++ ++I F+ G +
Sbjct: 228 LGRTGK-VFACDWDN--VTPDMYILGKALGGGVFPISCAAANRDILGVFEPGSHG----S 280
Query: 182 TYGGNPVSCAVANAVMEVLETENLREHALDVGNQLH 217
T+GGNP++CAV+ A +EVLE E L E +L +G +L
Sbjct: 281 TFGGNPLACAVSIAALEVLEEEKLTERSLQLGEKLV 316
Score = 30.2 bits (69), Expect = 0.52
Identities = 11/17 (64%), Positives = 15/17 (88%)
Query: 5 PLIGDVRGIGLFVGVEL 21
P+I +VRG GLF+G+EL
Sbjct: 325 PMITEVRGKGLFIGIEL 341
>3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr;
aminotransferase, biotin biosynthesis, pyridoxal
phosphate, adenosyl-L-methionine; HET: PLP; 1.90A
{Bacillus subtilis} PDB: 3drd_A 3du4_A*
Length = 448
Score = 120 bits (303), Expect = 3e-32
Identities = 53/201 (26%), Positives = 91/201 (45%), Gaps = 29/201 (14%)
Query: 37 HVITRPPVRMSTEAPCPDVYRGKYPADKYPDEDLGVKYAQDVQDLIEAMGRNGKRPCAFF 96
H + P + S +AP P VYR + ++ + +++ L+E + + A
Sbjct: 163 HHVYGPLMFESYKAPIPYVYRSESGDP----DECRDQCLRELAQLLE---EHHEEIAALS 215
Query: 97 AESL-QSCGGQIIPPANYLREVY----KH--------VQVGFGRVGTHWWAFQLQGDDII 143
ES+ Q G I+ P YL V + V GFGR G +A + + +
Sbjct: 216 IESMVQGASGMIVMPEGYLAGVRELCTTYDVLMIVDEVATGFGRTGK-MFACEHEN--VQ 272
Query: 144 PDIVTVGKPMGNGH-PVAAVITTKEIAKSFQETGVEY--F---NTYGGNPVSCAVANAVM 197
PD++ GK + G+ P+A T++I K+F + F ++Y GN + CAVA +
Sbjct: 273 PDLMAAGKGITGGYLPIAVTFATEDIYKAFYDDYENLKTFFHGHSYTGNQLGCAVALENL 332
Query: 198 EVLETENLREHALDVGNQLHT 218
+ E+EN+ E + +LH
Sbjct: 333 ALFESENIVEQVAEKSKKLHF 353
Score = 36.4 bits (85), Expect = 0.006
Identities = 11/35 (31%), Positives = 19/35 (54%)
Query: 2 ARYPLIGDVRGIGLFVGVELVTCRKQKTPATSEAQ 36
P +GD+R +G G ELV ++ K P ++ +
Sbjct: 359 HALPHVGDIRQLGFMCGAELVRSKETKEPYPADRR 393
>4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase
fold type I; HET: TA8; 1.35A {Chromobacterium violaceum}
PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A*
Length = 459
Score = 120 bits (303), Expect = 3e-32
Identities = 50/174 (28%), Positives = 79/174 (45%), Gaps = 24/174 (13%)
Query: 51 PCPDVYRGKYPADKYPDEDLGVKYAQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPP 110
P Y+ ++ GV A+ +++ I +G + AF E +Q GG I+PP
Sbjct: 184 EQPWWYKHGKDMT---PDEFGVVAARWLEEKILEIG--ADKVAAFVGEPIQGAGGVIVPP 238
Query: 111 ANYLREVY----KH--------VQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNGH- 157
A Y E+ K+ V GFGR G W+ Q PD+ T K + +G+
Sbjct: 239 ATYWPEIERICRKYDVLLVADEVICGFGRTG-EWFGHQH--FGFQPDLFTAAKGLSSGYL 295
Query: 158 PVAAVITTKEIAKSFQETGVEYFN--TYGGNPVSCAVANAVMEVLETENLREHA 209
P+ AV K +A+ G ++ + TY G+PV AVA+A + L E + +
Sbjct: 296 PIGAVFVGKRVAEGLIAGG-DFNHGFTYSGHPVCAAVAHANVAALRDEGIVQRV 348
Score = 43.7 bits (104), Expect = 2e-05
Identities = 8/36 (22%), Positives = 17/36 (47%)
Query: 1 MARYPLIGDVRGIGLFVGVELVTCRKQKTPATSEAQ 36
+R+ + DVRG+G+ LV + ++ +
Sbjct: 364 FSRFEHVDDVRGVGMVQAFTLVKNKAKRELFPDFGE 399
>3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target
11246C, pyridoxal phosphate, PSI-2, protein structure
initiative; 1.70A {Deinococcus radiodurans}
Length = 430
Score = 119 bits (301), Expect = 5e-32
Identities = 45/178 (25%), Positives = 77/178 (43%), Gaps = 27/178 (15%)
Query: 60 YPADKYPD-EDLGVKYAQDVQDLIEAMGRNGKRP---CAFFAESLQ-SCGGQIIPPANYL 114
+P PD G + A+ ++ L+E G P AF AE + + + P Y
Sbjct: 160 WPKLPKPDPARNGAEDAEGLRALLEREG-----PETVAAFMAEPVVGASDAALAPAPGYY 214
Query: 115 REVY----KH--------VQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNGH-PVAA 161
V + V G GR G+ A + + PDI +GK + G+ P+A
Sbjct: 215 ERVRDICDEAGIIFIADEVMSGMGRCGS-PLALS-RWSGVTPDIAVLGKGLAAGYAPLAG 272
Query: 162 VITTKEIAKSFQETGVEYF--NTYGGNPVSCAVANAVMEVLETENLREHALDVGNQLH 217
++ ++ ++ + TY G+PVS A +V++++E E+L A + G QL
Sbjct: 273 LLAAPQVYETVMGGSGAFMHGFTYAGHPVSVAAGLSVLDIVEREDLTGAAKERGAQLL 330
Score = 40.3 bits (95), Expect = 3e-04
Identities = 10/37 (27%), Positives = 15/37 (40%), Gaps = 1/37 (2%)
Query: 1 MARYPLIGDVRGIGLFVGVELVTCRKQKTPATSEAQH 37
AR+P + VRG GL +GV + +
Sbjct: 337 QARFPQMMQVRGTGLLLGVV-LGDLATGQAFETPGIA 372
>2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal
5'-phosphate, arginine metabolism, lysine biosynthesis,
gabaculine; HET: PLP; 1.91A {Salmonella typhimurium}
PDB: 2pb0_A*
Length = 420
Score = 118 bits (297), Expect = 2e-31
Identities = 47/165 (28%), Positives = 73/165 (44%), Gaps = 30/165 (18%)
Query: 71 GVKYAQ--DVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVYK----H---- 120
+ + D+ + M CA E +Q GG +L+ + H
Sbjct: 182 DIIHVPFNDLHAVKAVMD---DHTCAVVVEPIQGEGGVQAATPEFLKGLRDLCDEHQALL 238
Query: 121 ----VQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNGHPVAAVITTKEIAKSFQE-- 174
VQ G GR G +A+ G + PDI+T K +G G PV+A++TT+EIA +F
Sbjct: 239 VFDEVQCGMGRTGD-LFAYMHYG--VTPDILTSAKALGGGFPVSAMLTTQEIASAFHVGS 295
Query: 175 --TGVEYFNTYGGNPVSCAVANAVMEVLETENLREHALDVGNQLH 217
+ TYGGNP++CAVA A +++ T + + Q
Sbjct: 296 HGS------TYGGNPLACAVAGAAFDIINTPEVLQGIHTKRQQFV 334
Score = 33.7 bits (78), Expect = 0.035
Identities = 8/20 (40%), Positives = 14/20 (70%)
Query: 2 ARYPLIGDVRGIGLFVGVEL 21
++ + D+RG+GL +G EL
Sbjct: 342 EQFDIFSDIRGMGLLIGAEL 361
>3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST
genomics, protein structure initiative; HET: PLP; 2.00A
{Rhodobacter sphaeroides 2}
Length = 476
Score = 118 bits (297), Expect = 3e-31
Identities = 51/185 (27%), Positives = 82/185 (44%), Gaps = 26/185 (14%)
Query: 51 PCPDVYRGKYPADKYPDEDLGVKYAQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPP 110
P+ A E Q+ +D IE++G AF AE + + GG IIPP
Sbjct: 187 SSPNPRH----AGNRSQEAFLDDLVQEFEDRIESLG--PDTIAAFLAEPILASGGVIIPP 240
Query: 111 ANYLREVY----KH--------VQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNGH- 157
A Y KH V GFGR G W+A + + ++PDI+T K + +G+
Sbjct: 241 AGYHARFKAICEKHDILYISDEVVTGFGRCG-EWFASE-KVFGVVPDIITFAKGVTSGYV 298
Query: 158 PVAAVITTKEIAKSFQ---ETGVEYFN--TYGGNPVSCAVANAVMEVLETENLREHALDV 212
P+ + ++ + G + N TY PV+CA A A +E++E E + + A ++
Sbjct: 299 PLGGLAISEAVLARISGENAKGSWFTNGYTYSNQPVACAAALANIELMEREGIVDQAREM 358
Query: 213 GNQLH 217
+
Sbjct: 359 ADYFA 363
Score = 42.2 bits (100), Expect = 7e-05
Identities = 5/33 (15%), Positives = 12/33 (36%)
Query: 4 YPLIGDVRGIGLFVGVELVTCRKQKTPATSEAQ 36
P + + R +GL V+ + + +
Sbjct: 372 LPGVAETRSVGLVGCVQCLLDPTRADGTAEDKA 404
>3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural
genomics, center for structural genomics O infectious
diseases; 1.80A {Campylobacter jejuni subsp}
Length = 395
Score = 114 bits (289), Expect = 2e-30
Identities = 47/160 (29%), Positives = 82/160 (51%), Gaps = 21/160 (13%)
Query: 71 GVKYAQ--DVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVYKH-------- 120
GVK+A+ D+ + + + ++ CA ES+Q GG ++ + + K
Sbjct: 160 GVKFAKYNDISSVEKLVN---EKTCAIILESVQGEGGINPANKDFYKALRKLCDEKDILL 216
Query: 121 ----VQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNGHPVAAVITTKEIAKSFQETG 176
+Q G GR G ++A++ I+PDI+T K +G G V A + +++A + E G
Sbjct: 217 IADEIQCGMGRSGK-FFAYEHAQ--ILPDIMTSAKALGCGLSVGAFVINQKVASNSLEAG 273
Query: 177 VEYFNTYGGNPVSCAVANAVMEVLETENLREHALDVGNQL 216
++ +TYGGNP+ CA NAV E+ + E + E+ + L
Sbjct: 274 -DHGSTYGGNPLVCAGVNAVFEIFKEEKILENVNKLTPYL 312
Score = 33.7 bits (78), Expect = 0.038
Identities = 4/20 (20%), Positives = 8/20 (40%)
Query: 2 ARYPLIGDVRGIGLFVGVEL 21
+ +G+G G+ L
Sbjct: 321 NEFDFCKKRKGLGFMQGLSL 340
>2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine
aminotransferase (EC 2.6.1.11) (ACOA structural
genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8}
PDB: 2e54_A*
Length = 397
Score = 113 bits (284), Expect = 9e-30
Identities = 50/162 (30%), Positives = 74/162 (45%), Gaps = 27/162 (16%)
Query: 71 GVKYAQ--DVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVYKH-------- 120
G +Y + +V+DL M + CA F E +Q G + +L E K
Sbjct: 164 GFEYFEFNNVEDLRRKMS---EDVCAVFLEPIQGESGIVPATKEFLEEARKLCDEYDALL 220
Query: 121 ----VQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNGHPVAAVITTKEIAKSFQ--E 174
VQ G GR G +A+Q G ++PD++T K +G G P+ AVI E A + +
Sbjct: 221 VFDEVQCGMGRTGK-LFAYQKYG--VVPDVLTTAKGLGGGVPIGAVIVN-ERANVLEPGD 276
Query: 175 TGVEYFNTYGGNPVSCAVANAVMEVLETENLREHALDVGNQL 216
G T+GGNP++C V++ L E E + GN L
Sbjct: 277 HG----TTFGGNPLACRAGVTVIKELTKEGFLEEVEEKGNYL 314
Score = 34.0 bits (79), Expect = 0.025
Identities = 8/20 (40%), Positives = 14/20 (70%)
Query: 2 ARYPLIGDVRGIGLFVGVEL 21
Y ++ DVRG+GL +G++
Sbjct: 323 EEYDVVADVRGMGLMIGIQF 342
>2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics,
NPPSFA, national project on prote structural and
functional analyses; HET: PLP; 1.90A {Aquifex aeolicus}
Length = 375
Score = 112 bits (283), Expect = 1e-29
Identities = 42/162 (25%), Positives = 76/162 (46%), Gaps = 28/162 (17%)
Query: 71 GVKYAQ--DVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVYKH-------- 120
G YA+ D+ + + + + E +Q GG ++L ++ +
Sbjct: 153 GFSYAKLNDIDSVYKLLD---EETAGIIIEVIQGEGGVNEASEDFLSKLQEICKEKDVLL 209
Query: 121 ----VQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNGHPVAAVITTKEIAKSFQ--E 174
VQ G GR G ++A+Q + PD++ + K +G G P+ A++ +E+A+SF
Sbjct: 210 IIDEVQTGIGRTGE-FYAYQHFN--LKPDVIALAKGLGGGVPIGAILAREEVAQSFTPGS 266
Query: 175 TGVEYFNTYGGNPVSCAVANAVMEVLETENLREHALDVGNQL 216
G +T+GGNP++C V++ + E L H +VGN
Sbjct: 267 HG----STFGGNPLACRAGTVVVDEV--EKLLPHVREVGNYF 302
>1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold
type I, subclass II, homodimer; HET: LLP; 1.71A
{Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A*
1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A*
1dty_A*
Length = 429
Score = 104 bits (263), Expect = 1e-26
Identities = 44/183 (24%), Positives = 77/183 (42%), Gaps = 24/183 (13%)
Query: 53 PDVYRGKYPADKYPDEDLGVKYAQDVQDLIEAMGRNGKRPCAFFAESL-QSCGGQIIPPA 111
P+ P D + + L+ + A E + Q GG +
Sbjct: 170 PENLFAPAP-QSRMDGEWDERDMVGFARLMA---AHRHEIAAVIIEPIVQGAGGMRMYHP 225
Query: 112 NYLREVYKH------------VQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNGH-P 158
+L+ + K + GFGR G +A + I PDI+ +GK + G
Sbjct: 226 EWLKRIRKICDREGILLIADEIATGFGRTGK-LFACEHAE--IAPDILCLGKALTGGTMT 282
Query: 159 VAAVITTKEIAKSFQETGVEYF---NTYGGNPVSCAVANAVMEVLETENLREHALDVGNQ 215
++A +TT+E+A++ F T+ GNP++CA ANA + +LE+ + ++ D+ Q
Sbjct: 283 LSATLTTREVAETISNGEAGCFMHGPTFMGNPLACAAANASLAILESGDWQQQVADIEVQ 342
Query: 216 LHT 218
L
Sbjct: 343 LRE 345
Score = 26.7 bits (60), Expect = 6.6
Identities = 6/22 (27%), Positives = 9/22 (40%)
Query: 2 ARYPLIGDVRGIGLFVGVELVT 23
++ DVR +G VE
Sbjct: 351 RDAEMVADVRVLGAIGVVETTH 372
>3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase,
transferase-transferase inhibitor complex; HET: PL8;
1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A*
3lv2_A*
Length = 457
Score = 99.6 bits (249), Expect = 1e-24
Identities = 37/182 (20%), Positives = 66/182 (36%), Gaps = 28/182 (15%)
Query: 53 PDVYRGKYPADKYPDEDLGVKYAQDVQDLIEAMGRNGKRPCAFFAESL-QSCGGQIIPPA 111
Y + ++ A E + Q GG
Sbjct: 203 AAQVFAPQVPRDYDPAYS--------AAFEAQLAQHAGELAAVVVEPVVQGAGGMRFHDP 254
Query: 112 NYLREVY----KH--------VQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNGH-P 158
YL ++ ++ + GFGR G +A G + PDI+ VGK + G+
Sbjct: 255 RYLHDLRDICRRYEVLLIFDEIATGFGRTGA-LFAADHAG--VSPDIMCVGKALTGGYLS 311
Query: 159 VAAVITTKEIAKSFQETGVEYF---NTYGGNPVSCAVANAVMEVLETENLREHALDVGNQ 215
+AA + T ++A + T+ NP++CAV+ A +E+L ++ R ++
Sbjct: 312 LAATLCTADVAHTISAGAAGALMHGPTFMANPLACAVSVASVELLLGQDWRTRITELAAG 371
Query: 216 LH 217
L
Sbjct: 372 LT 373
Score = 26.8 bits (60), Expect = 7.1
Identities = 9/42 (21%), Positives = 12/42 (28%), Gaps = 1/42 (2%)
Query: 2 ARYPLIGDVRGIGLFVGVELVTCRKQKTPATSEAQH-VITRP 42
P + DVR G +E + V RP
Sbjct: 380 RALPAVTDVRVCGAIGVIECDRPVDLAVATPAALDRGVWLRP 421
>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase;
BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A
{Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A*
Length = 831
Score = 95.0 bits (236), Expect = 1e-22
Identities = 36/217 (16%), Positives = 66/217 (30%), Gaps = 27/217 (12%)
Query: 30 PATSEAQHVITRPPVRMSTEAPCPDVYRGKYPADKYPD----EDLGVKYAQDVQDLIE-- 83
P T + + S P+ + + L Y+ + ++
Sbjct: 527 PPTVFLSNGSWNISLPESFSEIAPEYGTFTSRDEIFDKSRDASTLARIYSAYLSKHLQEH 586
Query: 84 AMGRNGKRPCAFFAESL-QSCGGQIIPPANYLREVY----KH--------VQVGFGRVGT 130
+ R A E + GG + + R + V GF R+G
Sbjct: 587 SGVRQSAHVGALIIEPVIHGAGGMHMVDPLFQRVLVNECRNRKIPVIFDEVFTGFWRLGV 646
Query: 131 HWWAFQLQGDDIIPDIVTVGKPMGNGH-PVAAVITTKEIAKSFQETG-VEYF---NTYGG 185
+L G PDI K + G P+A + T + SF ++ ++Y
Sbjct: 647 -ETTTELLG--CKPDIACFAKLLTGGMVPLAVTLATDAVFDSFSGDSKLKALLHGHSYSA 703
Query: 186 NPVSCAVANAVMEVLETENLREHALDVGNQLHTPKKE 222
+ + CA A ++ + + G L E
Sbjct: 704 HAMGCATAAKAIQWFKDPETNHNITSQGKTLRELWDE 740
Score = 31.8 bits (72), Expect = 0.18
Identities = 7/40 (17%), Positives = 15/40 (37%)
Query: 2 ARYPLIGDVRGIGLFVGVELVTCRKQKTPATSEAQHVITR 41
+ + + V IG +EL A+ A+ ++
Sbjct: 747 SSHSAVQRVVVIGTLFALELKADASNSGYASLYAKSLLIM 786
>2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics,
NPPSFA, national PROJ protein structural and functional
analyses; 2.30A {Pseudomonas stutzeri}
Length = 453
Score = 43.4 bits (103), Expect = 3e-05
Identities = 35/157 (22%), Positives = 61/157 (38%), Gaps = 21/157 (13%)
Query: 77 DVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREV----YKH--------VQVG 124
D++ + E +G AF AE + S G ++LRE ++ V G
Sbjct: 187 DIEGMREVFANHGSDIAAFIAEPVGSHFGVTPVSDSFLREGAELARQYGALFILDEVISG 246
Query: 125 FGRVGTHWWAFQLQG-DDIIPDIVTVGKPMGNGHPVAAVITTKEIAKSFQETGVEYF--- 180
F RVG H Q D+ PD+ + K G P + +++
Sbjct: 247 F-RVGNHGM----QALLDVQPDLTCLAKASAGGLPGGILGGREDVMGVLSRGSDRKVLHQ 301
Query: 181 NTYGGNPVSCAVANAVMEVLETENLREHALDVGNQLH 217
T+ GNP++ A A A ++ + +++ D+G
Sbjct: 302 GTFTGNPITAAAAIAAIDTILEDDVCAKINDLGQFAR 338
>2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA,
structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum
pernix} PDB: 2zsl_A* 2zsm_A*
Length = 434
Score = 39.4 bits (93), Expect = 4e-04
Identities = 27/96 (28%), Positives = 45/96 (46%), Gaps = 7/96 (7%)
Query: 124 GFGRVGTHWWAFQLQG-DDIIPDIVTVGKPMGNGHPVAAVITTKEIAKSFQETGVEY-FN 181
GF R+G QG +I DI+ +GK +G G PV AV ++E+ G +
Sbjct: 248 GF-RLGLEGA----QGYFNIEGDIIVLGKIIGGGFPVGAVAGSREVMSLLTPQGKVFNAG 302
Query: 182 TYGGNPVSCAVANAVMEVLETENLREHALDVGNQLH 217
T+ +P++ A A ++ LE E + + + L
Sbjct: 303 TFNAHPITMAAGLATLKALEEEPVYSVSREAAKALE 338
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 39.6 bits (92), Expect = 5e-04
Identities = 31/180 (17%), Positives = 50/180 (27%), Gaps = 42/180 (23%)
Query: 34 EAQHVITRPPVRMSTEAPCPDVYRGK---Y-------PADKYPDE--DLGVKYAQDVQDL 81
A+ + RP + S A V G D Y +E DL Y V DL
Sbjct: 128 TARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDL 187
Query: 82 IEAMG-------RNGKRPCAFFAESLQSC----GGQIIPPANYLREVYKHVQVGFGRVG- 129
I+ R F + L P +YL + + +G
Sbjct: 188 IKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLL----SIPISCPLIGV 243
Query: 130 ---THWWAF-QLQG------DDIIPDIVTVGKPMGNGHPVAAVITTKEIAKSFQETGVEY 179
H+ +L G + + + A I + +SF + +
Sbjct: 244 IQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGL----VTAVAIAETDSWESFFVSVRKA 299
Score = 38.9 bits (90), Expect = 0.001
Identities = 30/216 (13%), Positives = 58/216 (26%), Gaps = 67/216 (31%)
Query: 54 DVYRGKYP--------ADKYPDEDLGVKYAQDVQDLIEAMGRNGKRPCAFFAESLQSCGG 105
D+Y+ AD + + G V + N F G
Sbjct: 1634 DLYK-TSKAAQDVWNRADNHFKDTYGFSILDIVIN-------NPVNLTIHFGGE----KG 1681
Query: 106 QIIPPANYLREVYKHVQVG-------FGRVGTHWWAFQLQGDDII--------PDIVTVG 150
+ I NY +++ + G F + H ++ + + + P + +
Sbjct: 1682 KRI-RENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLME 1740
Query: 151 -------KPMGN--------GHP---------VAAVITTKEIAK------SFQETGVEYF 180
K G GH +A V++ + + + + V
Sbjct: 1741 KAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRD 1800
Query: 181 NTYGGNPVSCAVA-NAVMEVLETENLREHALDVGNQ 215
N A+ V E L+ VG +
Sbjct: 1801 ELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKR 1836
Score = 36.6 bits (84), Expect = 0.005
Identities = 30/197 (15%), Positives = 51/197 (25%), Gaps = 74/197 (37%)
Query: 95 FFAESLQSCGGQIIPP------------------ANYL----REVYKHVQVGFGRV-GTH 131
F A LQ +I+P +L V F +V
Sbjct: 28 FIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLC 87
Query: 132 WWAFQ---LQGDDI------IPDI-------------------VTVGKPMGNGHPVA--- 160
F+ L+G+DI + + +P A
Sbjct: 88 LTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFR 147
Query: 161 AVITTKEIAKSF-----QETGVEYF-------NTYGG------NPVSCAVANAVMEVLET 202
AV + A+ Q +YF TY + ++ + L+
Sbjct: 148 AV--GEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDA 205
Query: 203 ENLREHALDVGNQLHTP 219
E + L++ L P
Sbjct: 206 EKVFTQGLNILEWLENP 222
Score = 35.4 bits (81), Expect = 0.012
Identities = 19/78 (24%), Positives = 25/78 (32%), Gaps = 18/78 (23%)
Query: 46 MSTEAPCPDV-YRGKYPADKYP-DEDLGVKYAQDVQDLIEAMGRNGKRPCAFFA------ 97
MS E+ V YRG P DE Y + N R A F+
Sbjct: 1777 MSIESLVEVVFYRGMTMQVAVPRDELGRSNYG--------MIAINPGRVAASFSQEALQY 1828
Query: 98 --ESLQSCGGQIIPPANY 113
E + G ++ NY
Sbjct: 1829 VVERVGKRTGWLVEIVNY 1846
>3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance,
microev0lution, integrated approach, chlorophyll
biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus
pcc 6301} PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A*
2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A*
Length = 427
Score = 38.6 bits (91), Expect = 0.001
Identities = 26/96 (27%), Positives = 40/96 (41%), Gaps = 7/96 (7%)
Query: 124 GFGRVGTHWWAFQLQG-DDIIPDIVTVGKPMGNGHPVAAVITTKEIAKSFQETGVEY-FN 181
GF R+ Q + PD+ T+GK +G G PV A +EI + G Y
Sbjct: 244 GF-RIAYGGV----QEKFGVTPDLTTLGKIIGGGLPVGAYGGKREIMQLVAPAGPMYQAG 298
Query: 182 TYGGNPVSCAVANAVMEVLETENLREHALDVGNQLH 217
T GNP++ +E+L E+ + +L
Sbjct: 299 TLSGNPLAMTAGIKTLELLRQPGTYEYLDQITKRLS 334
>3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class,
PLP-dependent transferase-like, bacillus A csgid,
porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus
anthracis}
Length = 434
Score = 38.2 bits (90), Expect = 0.001
Identities = 31/96 (32%), Positives = 41/96 (42%), Gaps = 7/96 (7%)
Query: 124 GFGRVGTHWWAFQLQG-DDIIPDIVTVGKPMGNGHPVAAVITTKEIAKSFQETGVEY-FN 181
F R Q + PD+ +GK +G G P+ A KEI + G Y
Sbjct: 247 AF-RFMYGGA----QDLLGVTPDLTALGKVIGGGLPIGAYGGKKEIMEQVAPLGPAYQAG 301
Query: 182 TYGGNPVSCAVANAVMEVLETENLREHALDVGNQLH 217
T GNP S A A +EVL+ E L E ++G L
Sbjct: 302 TMAGNPASMASGIACLEVLQQEGLYEKLDELGATLE 337
>2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA,
structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus
thermophilus}
Length = 424
Score = 37.5 bits (88), Expect = 0.002
Identities = 31/111 (27%), Positives = 45/111 (40%), Gaps = 19/111 (17%)
Query: 107 IIPPA----NYLREVYKH--------VQVGFGRVGTHWWAFQLQG-DDIIPDIVTVGKPM 153
++ P L E + V GF R+ + PD+VT+GK +
Sbjct: 214 VLVPTEDFLKALHEAKAYGVLLIADEVMTGF-RLAFGGA----TELLGLKPDLVTLGKIL 268
Query: 154 GNGHPVAAVITTKEIAKSFQETGVEY-FNTYGGNPVSCAVANAVMEVLETE 203
G G P AA +EI + G Y T GNP++ A A +E+LE
Sbjct: 269 GGGLPAAAYAGRREIMEKVAPLGPVYQAGTLSGNPLAMAAGLATLELLEEN 319
>4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics,
center for structural genomics of infec diseases, csgid,
porphyrin biosynthesis; 2.00A {Yersinia pestis}
Length = 429
Score = 37.1 bits (87), Expect = 0.003
Identities = 27/96 (28%), Positives = 42/96 (43%), Gaps = 7/96 (7%)
Query: 124 GFGRVGTHWWAFQLQG-DDIIPDIVTVGKPMGNGHPVAAVITTKEIAKSFQETGVEY-FN 181
GF RV Q +IPD+ +GK +G G PV A +E+ + TG Y
Sbjct: 245 GF-RVALAGA----QDYYHVIPDLTCLGKIIGGGMPVGAFGGRREVMNALAPTGPVYQAG 299
Query: 182 TYGGNPVSCAVANAVMEVLETENLREHALDVGNQLH 217
T GNP++ A A + + + E ++ + L
Sbjct: 300 TLSGNPIAMAAGFACLTEISQVGVYETLTELTDSLA 335
>2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium
SP} PDB: 2ykv_A* 2yku_A* 2ykx_A*
Length = 465
Score = 37.2 bits (87), Expect = 0.003
Identities = 17/96 (17%), Positives = 34/96 (35%), Gaps = 8/96 (8%)
Query: 126 GRVGTHWWAFQLQG-DDIIPDIVTVGKPMGNGHPVAAVITTKEIAKSF--QETGVEY-FN 181
R+ Q I D+ T+GK +G G A +++ + F G
Sbjct: 278 SRLSGGGA----QEMLGISADLTTLGKYIGGGMSFGAFGGRRDLMERFDPARDGAFAHAG 333
Query: 182 TYGGNPVSCAVANAVMEVLETENLREHALDVGNQLH 217
T+ N ++ + +A + + T G++
Sbjct: 334 TFNNNILTMSAGHAALTQIYTRQAASDLSASGDRFR 369
>3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of
cofactors, prosthetic groups, and carriers, csgid,
cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus
anthracis str} PDB: 3bs8_A*
Length = 429
Score = 35.9 bits (84), Expect = 0.008
Identities = 26/82 (31%), Positives = 36/82 (43%), Gaps = 7/82 (8%)
Query: 124 GFGRVGTHWWAFQLQG-DDIIPDIVTVGKPMGNGHPVAAVITTKEIAKSFQETGVEY-FN 181
GF RV + QG + PD+ +GK +G G PV A EI + +G Y
Sbjct: 245 GF-RVAYNCG----QGYYGVTPDLTCLGKVIGGGLPVGAYGGKAEIMRQVAPSGPIYQAG 299
Query: 182 TYGGNPVSCAVANAVMEVLETE 203
T GNP++ A + L E
Sbjct: 300 TLSGNPLAMAAGYETLVQLTPE 321
>3c5v_A PME-1, protein phosphatase methylesterase 1; demethylase, PP2A,
alternative splicing, hydrolase, phosphoprotein, serine
esterase; 2.00A {Homo sapiens} PDB: 3c5w_P
Length = 316
Score = 29.0 bits (65), Expect = 1.3
Identities = 10/34 (29%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 63 DKYPDEDLGVK-YAQDVQDLIEAMGRNGKRPCAF 95
EDL + A+DV +++EAM + P
Sbjct: 81 KVKNPEDLSAETMAKDVGNVVEAMYGDLPPPIML 114
>3ugj_A Phosphoribosylformylglycinamidine synthase; amidotransferase,
glutaminase, thioester intermediate, ligas; HET: ADP;
1.78A {Salmonella enterica subsp} PDB: 1t3t_A* 3ujn_A*
3umm_A*
Length = 1303
Score = 28.1 bits (62), Expect = 2.9
Identities = 19/114 (16%), Positives = 39/114 (34%), Gaps = 14/114 (12%)
Query: 12 GIGLFVGVELVTCRKQKTPATSEAQHVITRPPVRMSTEAPCPDVYRGKYPADKYPDEDLG 71
G+ + VG + + K + +E + + + + +S A DV P D L
Sbjct: 777 GLTIPVGKDSM-SMKTRWQEGNEQREMTSPLSLVISAFARVEDVRHTLTPQLSTEDNAL- 834
Query: 72 VKYAQDVQDLIEAMGRNGKR-PCAFFAESLQSCGGQIIPPAN--YLREVYKHVQ 122
L+ +G+ A+ + G + + L+ Y +Q
Sbjct: 835 ---------LLIDLGKGHNALGATALAQVYRQLGDKPADVRDVAQLKGFYDAMQ 879
>1rf8_B Eukaryotic initiation factor 4F subunit P150; protein biosynthesis,
translation regulat biosynthetic protein, translation;
HET: MTN M7G; NMR {Saccharomyces cerevisiae} SCOP:
a.210.1.1
Length = 100
Score = 26.6 bits (58), Expect = 3.3
Identities = 20/97 (20%), Positives = 36/97 (37%), Gaps = 6/97 (6%)
Query: 19 VELVTCRKQKTPATSEAQHVITRPPVRMSTEAPCPDVYRGKYPAD-KYPDEDL---GVKY 74
+ L + T T + + ++ + P DV+ YP + PD VKY
Sbjct: 3 IGLEAEIETTTDETDDGTNTVSHILNVLKDATPIEDVFSFNYPEGIEGPDIKYKKEHVKY 62
Query: 75 AQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPA 111
L++ + + A + +S S +IPP
Sbjct: 63 TYGPTFLLQFKDKLNVKADAEWVQSTAS--KIVIPPG 97
>1hfe_L Protein (Fe-only hydrogenase (E.C.1.18.99.1) (larger subunit));
hydrogene metabolism, periplasm; 1.60A {Desulfovibrio
vulgaris subsp} SCOP: c.96.1.1 d.58.1.5 PDB: 1e08_A*
1gx7_A*
Length = 421
Score = 27.4 bits (61), Expect = 4.4
Identities = 13/72 (18%), Positives = 29/72 (40%), Gaps = 17/72 (23%)
Query: 122 QVGFGRVGTHWWAFQLQGDDIIPDIVTV------------GKP--MGNGHP-VAAVITTK 166
G + + A +++ D + TV +P +G + A +TT+
Sbjct: 204 IGMNGALAKTYGAERMKYDP--KQVYTVSIMPCIAKKYEGLRPELKSSGMRDIDATLTTR 261
Query: 167 EIAKSFQETGVE 178
E+A ++ G++
Sbjct: 262 ELAYMIKKAGID 273
>1h32_A SOXA, diheme cytochrome C; electron transfer, sulfur cycle, soxax
complex, thiosulfate oxidation, cysteine persulfide heme
ligand; HET: HEC; 1.5A {Rhodovulum sulfidophilum} SCOP:
a.3.1.8 a.3.1.8 PDB: 1h31_A* 1h33_A* 2oz1_A*
Length = 261
Score = 26.2 bits (57), Expect = 8.1
Identities = 31/178 (17%), Positives = 51/178 (28%), Gaps = 27/178 (15%)
Query: 29 TPATSEAQHVITRPPVRMSTEAPCPDVYRGKYPADKYPDEDLGVKYAQDVQDLIEAMGRN 88
H+ R S D + D + V+ A+ V G
Sbjct: 15 VTRAPTPAHLADRFDEIRSGWTFRTDDTQALEMDDFENSGMVFVEEARAV--WDRPEGTE 72
Query: 89 GKRPCAFFAESLQSCGGQIIPPANYLREVYKHVQVGFGRVGTHWWAFQLQG--------- 139
GK + C G + LR VY G+V T +
Sbjct: 73 GK--------ACADCHGAVDDGMYGLRAVYPKYVESAGKVRTV--EQMINACRTSRMGAP 122
Query: 140 -----DDIIPDIVTVGKPMGNGHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAV 192
+ +V + + G PV+ I ++++ Y+ YG +SCA
Sbjct: 123 EWDYIGPDMTAMVALIASVSRGMPVSVAIDGPA-QSTWEKGREIYYTRYGQLDLSCAS 179
>1ou0_A Precorrin-8X methylmutase related protein; structural genomics,
PSI, protein structure initiative; 2.10A {Thermoplasma
acidophilum dsm 1728} SCOP: c.23.17.1
Length = 207
Score = 26.1 bits (57), Expect = 8.7
Identities = 11/91 (12%), Positives = 27/91 (29%), Gaps = 21/91 (23%)
Query: 131 HWWAFQLQGDDIIPDIVTVGK-----------PMGNGHPVAAVI-------TTKEIAKSF 172
++ D ++ +G NG ++ + +
Sbjct: 116 SAAGIRIAMQDHRNSVIVIGNAPTALLEAMRMIEENGWYDIPIVGIPVGFINASKAKEGL 175
Query: 173 QETGVEYF---NTYGGNPVSCAVANAVMEVL 200
+ +EY GG+P++ ++ N L
Sbjct: 176 VSSHIEYISVEGHRGGSPIAASIVNGFGRFL 206
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.137 0.420
Gapped
Lambda K H
0.267 0.0782 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,592,686
Number of extensions: 220062
Number of successful extensions: 717
Number of sequences better than 10.0: 1
Number of HSP's gapped: 601
Number of HSP's successfully gapped: 83
Length of query: 224
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 134
Effective length of database: 4,188,903
Effective search space: 561313002
Effective search space used: 561313002
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (24.9 bits)