RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy6205
(224 letters)
>d2byla1 c.67.1.4 (A:36-439) Ornithine aminotransferase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 404
Score = 93.7 bits (232), Expect = 4e-23
Identities = 48/145 (33%), Positives = 70/145 (48%), Gaps = 20/145 (13%)
Query: 77 DVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVYKH------------VQVG 124
D+ L A+ AF E +Q G ++P YL V + +Q G
Sbjct: 176 DLPALERALQ--DPNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTG 233
Query: 125 FGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNGH-PVAAVITTKEIAKSFQETGVEYFNTY 183
R G +++ PDIV +GK + G PV+AV+ +I + + E+F+TY
Sbjct: 234 LARTGRWLAV---DYENVRPDIVLLGKALSGGLYPVSAVLCDDDIMLTIKPG--EHFSTY 288
Query: 184 GGNPVSCAVANAVMEVLETENLREH 208
GGNP+ C VA A +EVLE ENL E+
Sbjct: 289 GGNPLGCRVAIAALEVLEEENLAEN 313
Score = 34.7 bits (79), Expect = 0.007
Identities = 6/43 (13%), Positives = 14/43 (32%), Gaps = 3/43 (6%)
Query: 3 RYPLIGDVRGIGLFVGVELVTCRKQKTPATSEA---QHVITRP 42
++ VRG GL + + + ++ +P
Sbjct: 329 PSDVVTAVRGKGLLNAIVIKETKDWDAWKVCLRLRDNGLLAKP 371
>d1sffa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase,
GABA-aminotransferase {Escherichia coli [TaxId: 562]}
Length = 425
Score = 92.2 bits (228), Expect = 2e-22
Identities = 40/162 (24%), Positives = 59/162 (36%), Gaps = 20/162 (12%)
Query: 52 CPDVYRGKYPADKYPDEDLGVKYAQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPA 111
VYR YP P + A I + A E +Q GG
Sbjct: 162 PGHVYRALYP---CPLHGISEDDAIASIHRIFKNDAAPEDIAAIVIEPVQGEGGFYASSP 218
Query: 112 NYLREVYK------------HVQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNGHPV 159
+++ + VQ G GR +A + G + PD+ T K + G P+
Sbjct: 219 AFMQRLRALCDEHGIMLIADEVQSGAGRT-GTLFAMEQMG--VAPDLTTFAKSIAGGFPL 275
Query: 160 AAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLE 201
A V E+ + G TY GNP++C A V++V E
Sbjct: 276 AGVTGRAEVMDAVAPGG--LGGTYAGNPIACVAALEVLKVFE 315
Score = 37.9 bits (87), Expect = 6e-04
Identities = 12/41 (29%), Positives = 19/41 (46%)
Query: 1 MARYPLIGDVRGIGLFVGVELVTCRKQKTPATSEAQHVITR 41
++P IGDVRG+G + +EL P ++ R
Sbjct: 338 AEKHPEIGDVRGLGAMIAIELFEDGDHNKPDAKLTAEIVAR 378
>d1z7da1 c.67.1.4 (A:7-410) Ornithine aminotransferase {Plasmodium
yoelii yoelii [TaxId: 73239]}
Length = 404
Score = 81.4 bits (200), Expect = 1e-18
Identities = 40/134 (29%), Positives = 63/134 (47%), Gaps = 18/134 (13%)
Query: 88 NGKRPCAFFAESLQSCGGQIIPPANYLREVYK------------HVQVGFGRVGTHWWAF 135
CAF E +Q G I+P NYL+ VY VQ G GR
Sbjct: 183 KDPNVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGLGRT---GKLL 239
Query: 136 QLQGDDIIPDIVTVGKPMGNGH-PVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVAN 194
+ ++ PD++ +GK + GH P++AV+ +I + E+ +TYGGNP++ ++
Sbjct: 240 CVHHYNVKPDVILLGKALSGGHYPISAVLANDDIMLVIKPG--EHGSTYGGNPLAASICV 297
Query: 195 AVMEVLETENLREH 208
+ VL E L E+
Sbjct: 298 EALNVLINEKLCEN 311
Score = 37.1 bits (85), Expect = 0.001
Identities = 10/45 (22%), Positives = 16/45 (35%), Gaps = 2/45 (4%)
Query: 1 MARYPLIGDVRGIGLFVGVELVTCRKQKTPATSEA--QHVITRPP 43
+ ++ DVRG GL +E + +ITR
Sbjct: 327 LKDSKIVRDVRGKGLLCAIEFKNELVNVLDICLKLKENGLITRDV 371
>d1vefa1 c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine
aminotransferase ArgD {Thermus thermophilus [TaxId:
274]}
Length = 387
Score = 79.4 bits (195), Expect = 5e-18
Identities = 42/151 (27%), Positives = 67/151 (44%), Gaps = 20/151 (13%)
Query: 77 DVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVYK------------HVQVG 124
DV+ L A+ A E +Q GG +LR + +Q G
Sbjct: 166 DVEALKRAVDEE---TAAVILEPVQGEGGVRPATPEFLRAAREITQEKGALLILDEIQTG 222
Query: 125 FGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNGHPVAAVITTKEIAKSFQETGVEYFNTYG 184
GR G + + I+PDI+T+ K +G G P+ + +E+A+S + G + T+G
Sbjct: 223 MGRTGKRFAF---EHFGIVPDILTLAKALGGGVPLGVAVMREEVARSMPKGG--HGTTFG 277
Query: 185 GNPVSCAVANAVMEVLETENLREHALDVGNQ 215
GNP++ A A + LE L E A ++G
Sbjct: 278 GNPLAMAAGVAAIRYLERTRLWERAAELGPW 308
Score = 33.9 bits (77), Expect = 0.013
Identities = 12/39 (30%), Positives = 17/39 (43%)
Query: 5 PLIGDVRGIGLFVGVELVTCRKQKTPATSEAQHVITRPP 43
P I +VRG+GL VG+EL + V+
Sbjct: 319 PKIREVRGMGLMVGLELKEKAAPYIARLEKEHRVLALQA 357
>d2gsaa_ c.67.1.4 (A:) Glutamate-1-semialdehyde aminomutase
(aminotransferase) {Synechococcus sp., strain GR6
[TaxId: 1131]}
Length = 427
Score = 76.0 bits (186), Expect = 1e-16
Identities = 31/144 (21%), Positives = 54/144 (37%), Gaps = 13/144 (9%)
Query: 76 QDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVYKHV----------QVGF 125
D++ + N E + G I+P A +L + + +V
Sbjct: 184 NDLEAVKALFAENPGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVMT 243
Query: 126 GRVGTHWWAFQLQGDDIIPDIVTVGKPMGNGHPVAAVITTKEIAKSFQETG-VEYFNTYG 184
G + + G + PD+ T+GK +G G PV A +EI + G + T
Sbjct: 244 GFRIAYGGVQEKFG--VTPDLTTLGKIIGGGLPVGAYGGKREIMQLVAPAGPMYQAGTLS 301
Query: 185 GNPVSCAVANAVMEVLETENLREH 208
GNP++ +E+L E+
Sbjct: 302 GNPLAMTAGIKTLELLRQPGTYEY 325
>d1zoda1 c.67.1.4 (A:3-433) Dialkylglycine decarboxylase
{Pseudomonas cepacia [TaxId: 292]}
Length = 431
Score = 46.6 bits (109), Expect = 8e-07
Identities = 43/188 (22%), Positives = 71/188 (37%), Gaps = 17/188 (9%)
Query: 24 CRKQKTPATSEAQHVITRPPVRMSTEAPCPDVYRGKYPADKYPDEDLGVKYAQDVQDLIE 83
A S + + + P + + DLI+
Sbjct: 136 WHGMTGAAASATYSAGRKGVGPAAVGSFAIPAPFTYRPRFERNGAYDYLAELDYAFDLID 195
Query: 84 AMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVYK------------HVQVGFGRVGTH 131
AF AE + S GG I P Y+ + + Q G GR GT
Sbjct: 196 RQSSG--NLAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGTM 253
Query: 132 WWAFQLQGDDIIPDIVTVGKPMGNGHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCA 191
+ + D + PDI+T+ K +G G P+AA++T+ I + E G ++ T+ +P+ A
Sbjct: 254 FACQR---DGVTPDILTLSKTLGAGLPLAAIVTSAAIEERAHELGYLFYTTHVSDPLPAA 310
Query: 192 VANAVMEV 199
V V++V
Sbjct: 311 VGLRVLDV 318
Score = 42.0 bits (97), Expect = 3e-05
Identities = 18/41 (43%), Positives = 23/41 (56%)
Query: 1 MARYPLIGDVRGIGLFVGVELVTCRKQKTPATSEAQHVITR 41
M R+ IGDVRG GL +GVE+V R+ K PA +
Sbjct: 343 MERFDCIGDVRGRGLLLGVEIVKDRRTKEPADGLGAKITRE 383
>d1s0aa_ c.67.1.4 (A:) Adenosylmethionine-8-amino-7-oxononanoate
aminotransferase, BioA {Escherichia coli [TaxId: 562]}
Length = 429
Score = 40.4 bits (93), Expect = 9e-05
Identities = 42/214 (19%), Positives = 72/214 (33%), Gaps = 21/214 (9%)
Query: 20 ELVTCRKQKTPATSEAQHVITRPPVRMSTEAPCPDVYRGKYPADKYPDEDLGVKYAQDVQ 79
+T R T A V S + A G +D+
Sbjct: 136 RFLTFRNGYHGDTFGAMSVCDPD---NSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMV 192
Query: 80 DLIEAMGRNGKRPCAFFAESLQ-SCGGQIIPPANYLREVYKH------------VQVGFG 126
M + A E + GG + +L+ + K + GFG
Sbjct: 193 GFARLMAAHRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFG 252
Query: 127 RVGTHWWAFQLQGDDIIPDIVTVGKPMGNGHPVAAVITTKEIAKSFQETGVEYF---NTY 183
R T + + G ++A +TT+E+A++ F T+
Sbjct: 253 R--TGKLFACEHAEIAPDILCLGKALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTF 310
Query: 184 GGNPVSCAVANAVMEVLETENLREHALDVGNQLH 217
GNP++CA ANA + +LE+ + ++ D+ QL
Sbjct: 311 MGNPLACAAANASLAILESGDWQQQVADIEVQLR 344
Score = 34.6 bits (78), Expect = 0.008
Identities = 6/22 (27%), Positives = 9/22 (40%)
Query: 1 MARYPLIGDVRGIGLFVGVELV 22
++ DVR +G VE
Sbjct: 350 ARDAEMVADVRVLGAIGVVETT 371
>d1ohwa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase,
GABA-aminotransferase {Pig (Sus scrofa) [TaxId: 9823]}
Length = 461
Score = 34.2 bits (77), Expect = 0.011
Identities = 10/23 (43%), Positives = 11/23 (47%), Gaps = 1/23 (4%)
Query: 1 MARYP-LIGDVRGIGLFVGVELV 22
ARYP I VRG G F +
Sbjct: 385 QARYPQFISRVRGRGTFCSFDTP 407
>d1fafa_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain
{Murine polyomavirus [TaxId: 10634]}
Length = 79
Score = 25.7 bits (56), Expect = 1.8
Identities = 6/52 (11%), Positives = 17/52 (32%)
Query: 156 GHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLETENLRE 207
P + +++++ + GG+ N++ +TE
Sbjct: 18 KLPRQLWGDFGRMQQAYKQQSLLLHPDKGGSHALMQELNSLWGTFKTEVYNL 69
>d1hfel1 c.96.1.1 (L:87-398) Fe-only hydrogenase larger subunit,
C-domain {Desulfovibrio desulfuricans [TaxId: 876]}
Length = 312
Score = 26.5 bits (58), Expect = 2.9
Identities = 6/23 (26%), Positives = 15/23 (65%)
Query: 159 VAAVITTKEIAKSFQETGVEYFN 181
+ A +TT+E+A ++ G+++
Sbjct: 168 IDATLTTRELAYMIKKAGIDFAK 190
>d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus
carota) [TaxId: 4039]}
Length = 319
Score = 25.3 bits (55), Expect = 6.1
Identities = 11/48 (22%), Positives = 17/48 (35%)
Query: 137 LQGDDIIPDIVTVGKPMGNGHPVAAVITTKEIAKSFQETGVEYFNTYG 184
GD I+T K + +G T + F + + NT G
Sbjct: 61 FLGDGRTSTIITASKNVQDGSTTFNSATVAAVGAGFLARDITFQNTAG 108
>d1ou0a_ c.23.17.1 (A:) Precorrin-8x methylmutase related protein
{Archaeon Thermoplasma acidophilum [TaxId: 2303]}
Length = 190
Score = 25.2 bits (55), Expect = 6.2
Identities = 11/90 (12%), Positives = 28/90 (31%), Gaps = 21/90 (23%)
Query: 132 WWAFQLQGDDIIPDIVTVG--------------KPMGNGHPVAAV----ITTKEIAKSFQ 173
++ D ++ +G + P+ + I + +
Sbjct: 101 AAGIRIAMQDHRNSVIVIGNAPTALLEAMRMIEENGWYDIPIVGIPVGFINASKAKEGLV 160
Query: 174 ETGVEYF---NTYGGNPVSCAVANAVMEVL 200
+ +EY GG+P++ ++ N L
Sbjct: 161 SSHIEYISVEGHRGGSPIAASIVNGFGRFL 190
>d1wraa1 d.157.1.8 (A:30-334) Teichoic acid phosphorylcholine
esterase Pce (LytD), N-terminal domain {Streptococcus
pneumoniae [TaxId: 1313]}
Length = 305
Score = 25.4 bits (54), Expect = 6.5
Identities = 5/39 (12%), Positives = 10/39 (25%), Gaps = 6/39 (15%)
Query: 146 IVTVGKPMGNGHPVAAVITTKEIAKSFQETGVEYFNTYG 184
+ T + + +E G+E N
Sbjct: 246 VQTSDSLPWKNGVDSEYV------NWLKERGIERINAAS 278
>d1tkea2 d.67.1.1 (A:63-224) Threonyl-tRNA synthetase (ThrRS),
second 'additional' domain {Escherichia coli [TaxId:
562]}
Length = 162
Score = 24.8 bits (53), Expect = 8.6
Identities = 3/24 (12%), Positives = 14/24 (58%)
Query: 114 LREVYKHVQVGFGRVGTHWWAFQL 137
+++++ H ++ G V + + + +
Sbjct: 21 IKQLWPHTKMAIGPVIDNGFYYDV 44
>d1obra_ c.56.5.2 (A:) Carboxypeptidase T {Thermoactinomyces
vulgaris [TaxId: 2026]}
Length = 323
Score = 24.9 bits (53), Expect = 8.8
Identities = 11/69 (15%), Positives = 22/69 (31%), Gaps = 9/69 (13%)
Query: 42 PPVRMSTEAPCPDVYRGKYPADKYPDEDLGVKYAQDVQDLIEAMGRNGKRPCAFFAESLQ 101
S+ +P + YRG+ ++D I + GK+ +
Sbjct: 154 GCCGGSSGSPSSETYRGRSAFSAP--------ETAAMRDFINSRVVGGKQQIKTLI-TFH 204
Query: 102 SCGGQIIPP 110
+ I+ P
Sbjct: 205 TYSELILYP 213
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.137 0.420
Gapped
Lambda K H
0.267 0.0557 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 878,652
Number of extensions: 41257
Number of successful extensions: 127
Number of sequences better than 10.0: 1
Number of HSP's gapped: 117
Number of HSP's successfully gapped: 24
Length of query: 224
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 142
Effective length of database: 1,281,736
Effective search space: 182006512
Effective search space used: 182006512
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.8 bits)