BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6206
(83 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2PB0|A Chain A, Structure Of Biosynthetic N-Acetylornithine
Aminotransferase From Salmonella Typhimurium: Studies On
Substrate Specificity And Inhibitor Binding
pdb|2PB0|B Chain B, Structure Of Biosynthetic N-Acetylornithine
Aminotransferase From Salmonella Typhimurium: Studies On
Substrate Specificity And Inhibitor Binding
pdb|2PB2|A Chain A, Structure Of Biosynthetic N-Acetylornithine
Aminotransferase From Salmonella Typhimurium: Studies On
Substrate Specificity And Inhibitor Binding
pdb|2PB2|B Chain B, Structure Of Biosynthetic N-Acetylornithine
Aminotransferase From Salmonella Typhimurium: Studies On
Substrate Specificity And Inhibitor Binding
Length = 420
Score = 46.6 bits (109), Expect = 4e-06, Method: Composition-based stats.
Identities = 29/69 (42%), Positives = 43/69 (62%), Gaps = 7/69 (10%)
Query: 5 VGHCHPAVVKAACTQ-LALLNTNNRFLHDNLVLCARKL--ASLLPDPLSVCFFVNSGSEA 61
+GHCHPA+V+A +Q L +T+N F ++ + RKL A+ L F+NSG+EA
Sbjct: 71 LGHCHPALVEALKSQGETLWHTSNVFTNEPALRLGRKLIDATFAERVL----FMNSGTEA 126
Query: 62 NDLALRLAR 70
N+ A +LAR
Sbjct: 127 NETAFKLAR 135
>pdb|1VEF|A Chain A, Acetylornithine Aminotransferase From Thermus Thermophilus
Hb8
pdb|1VEF|B Chain B, Acetylornithine Aminotransferase From Thermus Thermophilus
Hb8
pdb|1WKG|A Chain A, Acetylornithine Aminotransferase From Thermus Thermophilus
Hb8
pdb|1WKG|B Chain B, Acetylornithine Aminotransferase From Thermus Thermophilus
Hb8
pdb|1WKH|A Chain A, Acetylornithine Aminotransferase From Thermus Thermophilus
Hb8
pdb|1WKH|B Chain B, Acetylornithine Aminotransferase From Thermus Thermophilus
Hb8
Length = 395
Score = 44.7 bits (104), Expect = 1e-05, Method: Composition-based stats.
Identities = 29/73 (39%), Positives = 41/73 (56%), Gaps = 7/73 (9%)
Query: 5 VGHCHPAVVKA----ACTQLALLNTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSE 60
+GH +P VV+A A T +A+ T + R L ++LP L+ F VNSG+E
Sbjct: 59 LGHGNPEVVEAVKRQAETLMAMPQTLPTPMRGEFY---RTLTAILPPELNRVFPVNSGTE 115
Query: 61 ANDLALRLARVHT 73
AN+ AL+ AR HT
Sbjct: 116 ANEAALKFARAHT 128
>pdb|1Z3Z|A Chain A, The Crystal Structure Of A Dgd Mutant: Q52a
Length = 431
Score = 43.1 bits (100), Expect = 4e-05, Method: Composition-based stats.
Identities = 23/80 (28%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 1 MSLPVGHCHPAVVKAACTQLALLN-TNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGS 59
MS +GHCHP +V L+ + L +V A +LA++ P L +++G+
Sbjct: 51 MSAVLGHCHPEIVSVIGEYAGKLDHLFSEMLSRPVVDLATRLANITPPGLDRALLLSTGA 110
Query: 60 EANDLALRLARVHTNNDDVI 79
E+N+ A+R+A++ T +++
Sbjct: 111 ESNEAAIRMAKLVTGKYEIV 130
>pdb|1M0N|A Chain A, Structure Of Dialkylglycine Decarboxylase Complexed With
1- Aminocyclopentanephosphonate
pdb|1M0O|A Chain A, Structure Of Dialkylglycine Decarboxylase Complexed With
1- Amino-1-Methylpropanephosphonate
pdb|1M0P|A Chain A, Structure Of Dialkylglycine Decarboxylase Complexed With
1- Amino-1-Phenylethanephosphonate
pdb|1M0Q|A Chain A, Structure Of Dialkylglycine Decarboxylase Complexed With
S- 1-Aminoethanephosphonate
pdb|1ZC9|A Chain A, The Crystal Structure Of Dialkylglycine Decarboxylase
Complex With Pyridoxamine 5-phosphate
pdb|1ZOB|A Chain A, Crystal Structure Of Dialkylglycine Decarboxylases Bound
With Calcium Ion
pdb|1ZOD|A Chain A, Crystal Structure Of Dialkylglycine Decarboxylase Bound
With Cesium Ion
pdb|1DKA|A Chain A, Dialkylglycine Decarboxylase Structure: Bifunctional
Active Site And Alkali Metal Binding Sites
pdb|2DKB|A Chain A, Dialkylglycine Decarboxylase Structure: Bifunctional
Active Site And Alkali Metal Binding Sites
Length = 433
Score = 43.1 bits (100), Expect = 4e-05, Method: Composition-based stats.
Identities = 23/80 (28%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 1 MSLPVGHCHPAVVKAACTQLALLN-TNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGS 59
MS +GHCHP +V L+ + L +V A +LA++ P L +++G+
Sbjct: 53 MSAVLGHCHPEIVSVIGEYAGKLDHLFSEMLSRPVVDLATRLANITPPGLDRALLLSTGA 112
Query: 60 EANDLALRLARVHTNNDDVI 79
E+N+ A+R+A++ T +++
Sbjct: 113 ESNEAAIRMAKLVTGKYEIV 132
>pdb|3HMU|A Chain A, Crystal Structure Of A Class Iii Aminotransferase From
Silicibacter Pomeroyi
pdb|3HMU|B Chain B, Crystal Structure Of A Class Iii Aminotransferase From
Silicibacter Pomeroyi
Length = 472
Score = 42.4 bits (98), Expect = 6e-05, Method: Composition-based stats.
Identities = 25/74 (33%), Positives = 36/74 (48%), Gaps = 3/74 (4%)
Query: 5 VGHCHPAVVKAACTQLALLNTNNRFL---HDNLVLCARKLASLLPDPLSVCFFVNSGSEA 61
+G+ + + A Q+ L N F H + A+KLA L P L+ FF GSEA
Sbjct: 69 IGYGRDELAEVAARQMRELPYYNTFFKTTHVPAIALAQKLAELAPGDLNHVFFAGGGSEA 128
Query: 62 NDLALRLARVHTNN 75
ND +R+ R + N
Sbjct: 129 NDTNIRMVRTYWQN 142
>pdb|1D7R|A Chain A, Crystal Structure Of The Complex Of 2,2-Dialkylglycine
Decarboxylase With 5pa
pdb|1D7S|A Chain A, Crystal Structure Of The Complex Of 2,2-Dialkylglycine
Decarboxylase With Dcs
pdb|1D7U|A Chain A, Crystal Structure Of The Complex Of 2,2-Dialkylglycine
Decarboxylase With Lcs
pdb|1D7V|A Chain A, Crystal Structure Of The Complex Of 2,2-Dialkylglycine
Decarboxylase With Nma
Length = 433
Score = 42.4 bits (98), Expect = 8e-05, Method: Composition-based stats.
Identities = 23/80 (28%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 1 MSLPVGHCHPAVVKAACTQLALLN-TNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGS 59
MS +GHCHP +V L+ + L +V A +LA++ P L +++G+
Sbjct: 53 MSAVLGHCHPEIVSVIGEYAGKLDHLFSGMLSRPVVDLATRLANITPPGLDRALLLSTGA 112
Query: 60 EANDLALRLARVHTNNDDVI 79
E+N+ A+R+A++ T +++
Sbjct: 113 ESNEAAIRMAKLVTGKYEIV 132
>pdb|1DGD|A Chain A, An Alkali Metal Ion Size-Dependent Switch In The Active
Site Structure Of Dialkylglycine Decarboxylase
pdb|1DGE|A Chain A, An Alkali Metal Ion Size-Dependent Switch In The Active
Site Structure Of Dialkylglycine Decarboxylase
Length = 432
Score = 42.4 bits (98), Expect = 8e-05, Method: Composition-based stats.
Identities = 23/80 (28%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 1 MSLPVGHCHPAVVKAACTQLALLN-TNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGS 59
MS +GHCHP +V L+ + L +V A +LA++ P L +++G+
Sbjct: 52 MSAVLGHCHPEIVSVIGEYAGKLDHLFSGMLSRPVVDLATRLANITPPGLDRALLLSTGA 111
Query: 60 EANDLALRLARVHTNNDDVI 79
E+N+ A+R+A++ T +++
Sbjct: 112 ESNEAAIRMAKLVTGKYEIV 131
>pdb|3LG0|A Chain A, Structure Of Plasmodium Falciparum Ornithine
Delta-Aminotransferase
pdb|3LG0|B Chain B, Structure Of Plasmodium Falciparum Ornithine
Delta-Aminotransferase
pdb|3LG0|C Chain C, Structure Of Plasmodium Falciparum Ornithine
Delta-Aminotransferase
pdb|3LG0|D Chain D, Structure Of Plasmodium Falciparum Ornithine
Delta-Aminotransferase
pdb|3NTJ|A Chain A, Redox Regulation Of Plasmodium Falciparum Ornithine Delta-
Aminotransferase
pdb|3NTJ|B Chain B, Redox Regulation Of Plasmodium Falciparum Ornithine Delta-
Aminotransferase
pdb|3NTJ|C Chain C, Redox Regulation Of Plasmodium Falciparum Ornithine Delta-
Aminotransferase
pdb|3NTJ|D Chain D, Redox Regulation Of Plasmodium Falciparum Ornithine Delta-
Aminotransferase
Length = 422
Score = 41.2 bits (95), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/70 (34%), Positives = 37/70 (52%), Gaps = 3/70 (4%)
Query: 2 SLPVGHCHPAVVKAACTQLALLNTNNR-FLHDNLVLCARKLASLLPDPLSVCFFVNSGSE 60
S+ GHCHP ++ A Q L +R F D+L +C R L +L +N+G+E
Sbjct: 57 SVNQGHCHPDILNAMINQAKKLTICSRAFFSDSLGVCERYLTNLF--GYDKVLMMNTGAE 114
Query: 61 ANDLALRLAR 70
A++ A +L R
Sbjct: 115 ASETAYKLCR 124
>pdb|4ADB|A Chain A, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADB|B Chain B, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADB|C Chain C, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADB|D Chain D, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADC|A Chain A, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADC|B Chain B, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADC|C Chain C, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADC|D Chain D, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADD|A Chain A, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADD|B Chain B, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADD|C Chain C, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADD|D Chain D, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADE|A Chain A, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADE|B Chain B, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
Length = 406
Score = 40.0 bits (92), Expect = 3e-04, Method: Composition-based stats.
Identities = 25/68 (36%), Positives = 41/68 (60%), Gaps = 5/68 (7%)
Query: 5 VGHCHPAVVKAACTQLA-LLNTNNRFLHDNLVLCARKLA-SLLPDPLSVCFFVNSGSEAN 62
+GH HP + +A Q + +T N + ++ ++ A+KL + D + FF NSG+EAN
Sbjct: 53 LGHAHPELREALNEQASKFWHTGNGYTNEPVLRLAKKLIDATFADRV---FFCNSGAEAN 109
Query: 63 DLALRLAR 70
+ AL+LAR
Sbjct: 110 EAALKLAR 117
>pdb|1Z7D|A Chain A, Ornithine Aminotransferase Py00104 From Plasmodium Yoelii
pdb|1Z7D|B Chain B, Ornithine Aminotransferase Py00104 From Plasmodium Yoelii
pdb|1Z7D|C Chain C, Ornithine Aminotransferase Py00104 From Plasmodium Yoelii
pdb|1Z7D|D Chain D, Ornithine Aminotransferase Py00104 From Plasmodium Yoelii
pdb|1Z7D|E Chain E, Ornithine Aminotransferase Py00104 From Plasmodium Yoelii
pdb|1Z7D|F Chain F, Ornithine Aminotransferase Py00104 From Plasmodium Yoelii
Length = 433
Score = 40.0 bits (92), Expect = 3e-04, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 36/70 (51%), Gaps = 3/70 (4%)
Query: 2 SLPVGHCHPAVVKAACTQLALLNTNNR-FLHDNLVLCARKLASLLPDPLSVCFFVNSGSE 60
S+ GHCHP ++ A Q L +R F L +C R L +LL +N+G+E
Sbjct: 76 SVNQGHCHPNILNAMINQAKNLTICSRAFFSVPLGICERYLTNLL--GYDKVLMMNTGAE 133
Query: 61 ANDLALRLAR 70
AN+ A +L R
Sbjct: 134 ANETAYKLCR 143
>pdb|3LV2|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
7,8-Diaminopelargonic Acid Synthase In Complex With
Substrate Analog Sinefungin
pdb|3LV2|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis
7,8-Diaminopelargonic Acid Synthase In Complex With
Substrate Analog Sinefungin
Length = 462
Score = 38.1 bits (87), Expect = 0.001, Method: Composition-based stats.
Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
Query: 6 GHCHPAVVKAACTQLALLN--TNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEAND 63
GH HPA+ +A TQL ++N H+ A+ L + P L FF +SGS + +
Sbjct: 95 GHGHPALDQALTTQLRVMNHVMFGGLTHEPAARLAKLLVDITPAGLDTVFFSDSGSVSVE 154
Query: 64 LALRLA 69
+A ++A
Sbjct: 155 VAAKMA 160
>pdb|3BV0|A Chain A, Crystal Structure Of Plp Bound 7,8-Diaminopelargonic Acid
Synthase In Mycobacterium Tuberculosis
pdb|3BV0|B Chain B, Crystal Structure Of Plp Bound 7,8-Diaminopelargonic Acid
Synthase In Mycobacterium Tuberculosis
Length = 437
Score = 38.1 bits (87), Expect = 0.001, Method: Composition-based stats.
Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
Query: 6 GHCHPAVVKAACTQLALLN--TNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEAND 63
GH HPA+ +A TQL ++N H+ A+ L + P L FF +SGS + +
Sbjct: 70 GHGHPALDQALTTQLRVMNHVMFGGLTHEPAARLAKLLVDITPAGLDTVFFSDSGSVSVE 129
Query: 64 LALRLA 69
+A ++A
Sbjct: 130 VAAKMA 135
>pdb|3TFT|A Chain A, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
(Bioa) From Mycobacterium Tuberculosis, Pre-Reaction
Complex With A 3,6- Dihydropyrid-2-One Heterocycle
Inhibitor
pdb|3TFT|B Chain B, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
(Bioa) From Mycobacterium Tuberculosis, Pre-Reaction
Complex With A 3,6- Dihydropyrid-2-One Heterocycle
Inhibitor
pdb|3TFU|A Chain A, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
(Bioa) From Mycobacterium Tuberculosis, Post-Reaction
Complex With A 3,6- Dihydropyrid-2-One Heterocycle
Inhibitor
pdb|3TFU|B Chain B, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
(Bioa) From Mycobacterium Tuberculosis, Post-Reaction
Complex With A 3,6- Dihydropyrid-2-One Heterocycle
Inhibitor
Length = 457
Score = 38.1 bits (87), Expect = 0.001, Method: Composition-based stats.
Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
Query: 6 GHCHPAVVKAACTQLALLN--TNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEAND 63
GH HPA+ +A TQL ++N H+ A+ L + P L FF +SGS + +
Sbjct: 90 GHGHPALDQALTTQLRVMNHVMFGGLTHEPAARLAKLLVDITPAGLDTVFFSDSGSVSVE 149
Query: 64 LALRLA 69
+A ++A
Sbjct: 150 VAAKMA 155
>pdb|1DTY|A Chain A, Crystal Structure Of
Adenosylmethionine-8-Amino-7-Oxonanoate Aminotransferase
With Pyridoxal Phosphate Cofactor.
pdb|1DTY|B Chain B, Crystal Structure Of
Adenosylmethionine-8-Amino-7-Oxonanoate Aminotransferase
With Pyridoxal Phosphate Cofactor
Length = 429
Score = 35.8 bits (81), Expect = 0.007, Method: Composition-based stats.
Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Query: 6 GHCHPAVVKAACTQLALLN--TNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEAND 63
G+ HP + A +Q+ ++ H + RKL ++ P PL F +SGS A +
Sbjct: 58 GYNHPQLNAAMKSQIDAMSHVMFGEITHAPAIELCRKLVAMTPQPLECVFLADSGSVAVE 117
Query: 64 LALRLA 69
+A+++A
Sbjct: 118 VAMKMA 123
>pdb|2CFB|A Chain A, Glutamate-1-Semialdehyde 2,1-Aminomutase From
Thermosynechococcus Elongatus
Length = 411
Score = 35.8 bits (81), Expect = 0.007, Method: Composition-based stats.
Identities = 28/79 (35%), Positives = 40/79 (50%), Gaps = 10/79 (12%)
Query: 5 VGHCHPAVVKAACTQLALLNTNNRF----LHDNLVLCARKLASLLPDPLSVCFFVNSGSE 60
VGH HP V+ A A L F L +N++ A + + +P + + FVNSG+E
Sbjct: 50 VGHAHPEVIDAL---HAALEKGTSFGAPCLLENIL--AEMVIAAVPS-VEMVRFVNSGTE 103
Query: 61 ANDLALRLARVHTNNDDVI 79
A LRL R +T + VI
Sbjct: 104 ACMAVLRLMRAYTQREKVI 122
>pdb|2BYL|A Chain A, Structure Of Ornithine Aminotransferase Triple Mutant Y85i
Y55a G320f
pdb|2BYL|B Chain B, Structure Of Ornithine Aminotransferase Triple Mutant Y85i
Y55a G320f
pdb|2BYL|C Chain C, Structure Of Ornithine Aminotransferase Triple Mutant Y85i
Y55a G320f
Length = 439
Score = 35.4 bits (80), Expect = 0.008, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Query: 6 GHCHPAVVKAACTQLALLNTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLA 65
GHCHP +V A +Q+ L +R ++N++ + + L + V +N+G EA + A
Sbjct: 91 GHCHPKIVNALKSQVDKLTLTSRAFYNNVLGEYEEYITKLFNYHKV-LPMNTGVEAGETA 149
Query: 66 LRLAR 70
+LAR
Sbjct: 150 CKLAR 154
>pdb|2BYJ|A Chain A, Ornithine Aminotransferase Mutant Y85i
pdb|2BYJ|B Chain B, Ornithine Aminotransferase Mutant Y85i
pdb|2BYJ|C Chain C, Ornithine Aminotransferase Mutant Y85i
Length = 439
Score = 35.4 bits (80), Expect = 0.008, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Query: 6 GHCHPAVVKAACTQLALLNTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLA 65
GHCHP +V A +Q+ L +R ++N++ + + L + V +N+G EA + A
Sbjct: 91 GHCHPKIVNALKSQVDKLTLTSRAFYNNVLGEYEEYITKLFNYHKV-LPMNTGVEAGETA 149
Query: 66 LRLAR 70
+LAR
Sbjct: 150 CKLAR 154
>pdb|1OAT|A Chain A, Ornithine Aminotransferase
pdb|1OAT|B Chain B, Ornithine Aminotransferase
pdb|1OAT|C Chain C, Ornithine Aminotransferase
pdb|2OAT|A Chain A, Ornithine Aminotransferase Complexed With
5-Fluoromethylornithine
pdb|2OAT|B Chain B, Ornithine Aminotransferase Complexed With
5-Fluoromethylornithine
pdb|2OAT|C Chain C, Ornithine Aminotransferase Complexed With
5-Fluoromethylornithine
Length = 439
Score = 35.4 bits (80), Expect = 0.008, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Query: 6 GHCHPAVVKAACTQLALLNTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLA 65
GHCHP +V A +Q+ L +R ++N++ + + L + V +N+G EA + A
Sbjct: 91 GHCHPKIVNALKSQVDKLTLTSRAFYNNVLGEYEEYITKLFNYHKV-LPMNTGVEAGETA 149
Query: 66 LRLAR 70
+LAR
Sbjct: 150 CKLAR 154
>pdb|2CAN|A Chain A, Human Ornithine Aminotransferase Complexed With L-Canaline
pdb|2CAN|B Chain B, Human Ornithine Aminotransferase Complexed With L-Canaline
pdb|2CAN|C Chain C, Human Ornithine Aminotransferase Complexed With L-Canaline
pdb|1GBN|A Chain A, Human Ornithine Aminotransferase Complexed With The
Neurotoxin Gabaculine
pdb|1GBN|B Chain B, Human Ornithine Aminotransferase Complexed With The
Neurotoxin Gabaculine
pdb|1GBN|C Chain C, Human Ornithine Aminotransferase Complexed With The
Neurotoxin Gabaculine
Length = 402
Score = 35.4 bits (80), Expect = 0.008, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Query: 6 GHCHPAVVKAACTQLALLNTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLA 65
GHCHP +V A +Q+ L +R ++N++ + + L + V +N+G EA + A
Sbjct: 54 GHCHPKIVNALKSQVDKLTLTSRAFYNNVLGEYEEYITKLFNYHKV-LPMNTGVEAGETA 112
Query: 66 LRLAR 70
+LAR
Sbjct: 113 CKLAR 117
>pdb|3OKS|A Chain A, Crystal Structure Of 4-Aminobutyrate Transaminase From
Mycobacterium Smegmatis
pdb|3OKS|B Chain B, Crystal Structure Of 4-Aminobutyrate Transaminase From
Mycobacterium Smegmatis
pdb|3OKS|C Chain C, Crystal Structure Of 4-Aminobutyrate Transaminase From
Mycobacterium Smegmatis
pdb|3OKS|D Chain D, Crystal Structure Of 4-Aminobutyrate Transaminase From
Mycobacterium Smegmatis
Length = 451
Score = 35.0 bits (79), Expect = 0.010, Method: Composition-based stats.
Identities = 29/85 (34%), Positives = 44/85 (51%), Gaps = 9/85 (10%)
Query: 5 VGHCHPAVVKAACTQLALLNTNNRFL---HDNLVLCARKLASLLP---DPLSVCFFVNSG 58
VG+ P VV+A +Q+ T+ F+ ++ V +L L P D S F NSG
Sbjct: 75 VGNSAPKVVEAVRSQVGDF-THTCFMVTPYEGYVAVCEQLNRLTPVRGDKRSALF--NSG 131
Query: 59 SEANDLALRLARVHTNNDDVITQDQ 83
SEA + A+++AR HT+ V+ D
Sbjct: 132 SEAVENAVKIARSHTHKPAVVAFDH 156
>pdb|2E54|A Chain A, Crystal Structure Of Acetylornithine Aminotransferase From
Thermotoga Maritima
Length = 385
Score = 35.0 bits (79), Expect = 0.010, Method: Composition-based stats.
Identities = 24/69 (34%), Positives = 39/69 (56%), Gaps = 7/69 (10%)
Query: 5 VGHCHPAVVKAACTQL-ALLNTNNRFLHDNLVLCARKLASLLPDPL--SVCFFVNSGSEA 61
+GH HP +V+A Q L++ +N F + + +LA LL FF N+G+EA
Sbjct: 42 LGHSHPRLVEAIKDQAEKLIHCSNLFWNRPQM----ELAELLSKNTFGGKVFFANTGTEA 97
Query: 62 NDLALRLAR 70
N+ A+++AR
Sbjct: 98 NEAAIKIAR 106
>pdb|3Q8N|A Chain A, Crystal Structure Of 4-Aminobutyrate Transaminase From
Mycobacterium Smegmatis
pdb|3Q8N|B Chain B, Crystal Structure Of 4-Aminobutyrate Transaminase From
Mycobacterium Smegmatis
pdb|3Q8N|C Chain C, Crystal Structure Of 4-Aminobutyrate Transaminase From
Mycobacterium Smegmatis
pdb|3Q8N|D Chain D, Crystal Structure Of 4-Aminobutyrate Transaminase From
Mycobacterium Smegmatis
Length = 453
Score = 35.0 bits (79), Expect = 0.011, Method: Composition-based stats.
Identities = 28/83 (33%), Positives = 41/83 (49%), Gaps = 5/83 (6%)
Query: 5 VGHCHPAVVKAACTQLALLNTNNRFL---HDNLVLCARKLASLLP-DPLSVCFFVNSGSE 60
VG+ PAVV A Q+A T+ F+ ++ V A L L P D NSG+E
Sbjct: 82 VGNSAPAVVDAVTQQVAAF-THTCFMVTPYEGYVKVAEHLNRLTPGDHEKRTALFNSGAE 140
Query: 61 ANDLALRLARVHTNNDDVITQDQ 83
A + A+++AR +T V+ D
Sbjct: 141 AVENAVKIARAYTRRQAVVVFDH 163
>pdb|2YKU|A Chain A, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|2YKU|B Chain B, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|2YKU|C Chain C, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|2YKV|A Chain A, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|2YKV|B Chain B, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|2YKV|C Chain C, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|2YKX|A Chain A, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|2YKX|B Chain B, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|2YKX|C Chain C, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|2YKY|A Chain A, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|2YKY|B Chain B, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|2YKY|C Chain C, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|4AO4|A Chain A, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|4AO4|B Chain B, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|4AO4|C Chain C, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
Length = 465
Score = 35.0 bits (79), Expect = 0.011, Method: Composition-based stats.
Identities = 25/77 (32%), Positives = 36/77 (46%), Gaps = 2/77 (2%)
Query: 6 GHCHPAVVKAACTQLALLNTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLA 65
GH HP V++AA + + N +N L A + P + + F NSG+EAN +A
Sbjct: 115 GHSHP-VIRAAVERALAVGLNLSTQTENEALFAEAVCDRFPS-IDLVRFTNSGTEANLMA 172
Query: 66 LRLARVHTNNDDVITQD 82
L A T V+ D
Sbjct: 173 LATATAITGRKTVLAFD 189
>pdb|2ORD|A Chain A, Crystal Structure Of Acetylornithine Aminotransferase (Ec
2.6.1.11) (Acoat) (Tm1785) From Thermotoga Maritima At
1.40 A Resolution
pdb|2ORD|B Chain B, Crystal Structure Of Acetylornithine Aminotransferase (Ec
2.6.1.11) (Acoat) (Tm1785) From Thermotoga Maritima At
1.40 A Resolution
Length = 397
Score = 35.0 bits (79), Expect = 0.011, Method: Composition-based stats.
Identities = 24/69 (34%), Positives = 38/69 (55%), Gaps = 7/69 (10%)
Query: 5 VGHCHPAVVKAACTQL-ALLNTNNRFLHDNLVLCARKLASLLPDPL--SVCFFVNSGSEA 61
+GH HP +V+A Q L++ +N F + +LA LL FF N+G+EA
Sbjct: 54 LGHSHPRLVEAIKDQAEKLIHCSNLFWNRP----QXELAELLSKNTFGGKVFFANTGTEA 109
Query: 62 NDLALRLAR 70
N+ A+++AR
Sbjct: 110 NEAAIKIAR 118
>pdb|1S08|A Chain A, Crystal Structure Of The D147n Mutant Of 7,8-
Diaminopelargonic Acid Synthase
pdb|1S08|B Chain B, Crystal Structure Of The D147n Mutant Of 7,8-
Diaminopelargonic Acid Synthase
Length = 429
Score = 34.7 bits (78), Expect = 0.013, Method: Composition-based stats.
Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Query: 6 GHCHPAVVKAACTQLALLN--TNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEAND 63
G+ HP + A +Q+ ++ H + RKL ++ P PL F +SGS A +
Sbjct: 58 GYNHPQLNAAMKSQIDAMSHVMFGGITHAPAIELCRKLVAMTPQPLECVFLADSGSVAVE 117
Query: 64 LALRLA 69
+A+++A
Sbjct: 118 VAMKMA 123
>pdb|1S07|A Chain A, Crystal Structure Of The R253a Mutant Of
7,8-Diaminopelargonic Acid Synthase
pdb|1S07|B Chain B, Crystal Structure Of The R253a Mutant Of
7,8-Diaminopelargonic Acid Synthase
Length = 429
Score = 34.7 bits (78), Expect = 0.013, Method: Composition-based stats.
Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Query: 6 GHCHPAVVKAACTQLALLN--TNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEAND 63
G+ HP + A +Q+ ++ H + RKL ++ P PL F +SGS A +
Sbjct: 58 GYNHPQLNAAMKSQIDAMSHVMFGGITHAPAIELCRKLVAMTPQPLECVFLADSGSVAVE 117
Query: 64 LALRLA 69
+A+++A
Sbjct: 118 VAMKMA 123
>pdb|1S09|A Chain A, Crystal Structure Of The Y144f Mutant Of 7,8-
Diaminopelargonic Acid Synthase
pdb|1S09|B Chain B, Crystal Structure Of The Y144f Mutant Of 7,8-
Diaminopelargonic Acid Synthase
Length = 429
Score = 34.7 bits (78), Expect = 0.013, Method: Composition-based stats.
Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Query: 6 GHCHPAVVKAACTQLALLN--TNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEAND 63
G+ HP + A +Q+ ++ H + RKL ++ P PL F +SGS A +
Sbjct: 58 GYNHPQLNAAMKSQIDAMSHVMFGGITHAPAIELCRKLVAMTPQPLECVFLADSGSVAVE 117
Query: 64 LALRLA 69
+A+++A
Sbjct: 118 VAMKMA 123
>pdb|1S06|A Chain A, Crystal Structure Of The R253k Mutant Of 7,8-
Diaminopelargonic Acid Synthase
pdb|1S06|B Chain B, Crystal Structure Of The R253k Mutant Of 7,8-
Diaminopelargonic Acid Synthase
Length = 429
Score = 34.7 bits (78), Expect = 0.013, Method: Composition-based stats.
Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Query: 6 GHCHPAVVKAACTQLALLN--TNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEAND 63
G+ HP + A +Q+ ++ H + RKL ++ P PL F +SGS A +
Sbjct: 58 GYNHPQLNAAMKSQIDAMSHVMFGGITHAPAIELCRKLVAMTPQPLECVFLADSGSVAVE 117
Query: 64 LALRLA 69
+A+++A
Sbjct: 118 VAMKMA 123
>pdb|1S0A|A Chain A, Crystal Structure Of The Y17f Mutant Of 7,8-
Diaminopelargonic Acid Synthase
pdb|1S0A|B Chain B, Crystal Structure Of The Y17f Mutant Of 7,8-
Diaminopelargonic Acid Synthase
Length = 429
Score = 34.7 bits (78), Expect = 0.013, Method: Composition-based stats.
Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Query: 6 GHCHPAVVKAACTQLALLN--TNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEAND 63
G+ HP + A +Q+ ++ H + RKL ++ P PL F +SGS A +
Sbjct: 58 GYNHPQLNAAMKSQIDAMSHVMFGGITHAPAIELCRKLVAMTPQPLECVFLADSGSVAVE 117
Query: 64 LALRLA 69
+A+++A
Sbjct: 118 VAMKMA 123
>pdb|1QJ3|A Chain A, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
In Complex With 7-Keto-8-Aminopelargonic Acid
pdb|1QJ3|B Chain B, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
In Complex With 7-Keto-8-Aminopelargonic Acid
pdb|1QJ5|A Chain A, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
pdb|1QJ5|B Chain B, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
pdb|1MLY|A Chain A, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
In Complex With The Cis Isomer Of Amiclenomycin
pdb|1MLY|B Chain B, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
In Complex With The Cis Isomer Of Amiclenomycin
pdb|1MLZ|A Chain A, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
In Complex With The Trans-Isomer Of Amiclenomycin.
pdb|1MLZ|B Chain B, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
In Complex With The Trans-Isomer Of Amiclenomycin
Length = 429
Score = 34.7 bits (78), Expect = 0.013, Method: Composition-based stats.
Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Query: 6 GHCHPAVVKAACTQLALLN--TNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEAND 63
G+ HP + A +Q+ ++ H + RKL ++ P PL F +SGS A +
Sbjct: 58 GYNHPQLNAAMKSQIDAMSHVMFGGITHAPAIELCRKLVAMTPQPLECVFLADSGSVAVE 117
Query: 64 LALRLA 69
+A+++A
Sbjct: 118 VAMKMA 123
>pdb|1MGV|A Chain A, Crystal Structure Of The R391a Mutant Of
7,8-Diaminopelargonic Acid Synthase
pdb|1MGV|B Chain B, Crystal Structure Of The R391a Mutant Of
7,8-Diaminopelargonic Acid Synthase
Length = 429
Score = 34.7 bits (78), Expect = 0.013, Method: Composition-based stats.
Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Query: 6 GHCHPAVVKAACTQLALLN--TNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEAND 63
G+ HP + A +Q+ ++ H + RKL ++ P PL F +SGS A +
Sbjct: 58 GYNHPQLNAAMKSQIDAMSHVMFGGITHAPAIELCRKLVAMTPQPLECVFLADSGSVAVE 117
Query: 64 LALRLA 69
+A+++A
Sbjct: 118 VAMKMA 123
>pdb|3L44|A Chain A, Crystal Structure Of Bacillus Anthracis Heml-1, Glutamate
Semialdehyde Aminotransferase
pdb|3L44|B Chain B, Crystal Structure Of Bacillus Anthracis Heml-1, Glutamate
Semialdehyde Aminotransferase
Length = 434
Score = 33.9 bits (76), Expect = 0.023, Method: Composition-based stats.
Identities = 24/71 (33%), Positives = 31/71 (43%), Gaps = 8/71 (11%)
Query: 6 GHCHPAVVKAACTQLALLNTNNRFLHDNLVLCARKLASLLPDP---LSVCFFVNSGSEAN 62
GH HP + KA T N L+ K A L + L FVNSG+EA
Sbjct: 70 GHAHPHITKAITTA-----AENGVLYGTPTALEVKFAKXLKEAXPALDKVRFVNSGTEAV 124
Query: 63 DLALRLARVHT 73
+R+AR +T
Sbjct: 125 XTTIRVARAYT 135
>pdb|2EPJ|A Chain A, Crystal Structure Of Glutamate-1-Semialdehyde
2,1-Aminomutase From Aeropyrum Pernix
pdb|2ZSL|A Chain A, Crystal Structure Of Glutamate-1-Semialdehyde 2,1-
Aminomutase From Aeropyrum Pernix
pdb|2ZSM|A Chain A, Crystal Structure Of Glutamate-1-semialdehyde 2,1-
Aminomutase From Aeropyrum Pernix, Hexagonal Form
pdb|2ZSM|B Chain B, Crystal Structure Of Glutamate-1-semialdehyde 2,1-
Aminomutase From Aeropyrum Pernix, Hexagonal Form
pdb|2ZSM|C Chain C, Crystal Structure Of Glutamate-1-semialdehyde 2,1-
Aminomutase From Aeropyrum Pernix, Hexagonal Form
Length = 434
Score = 33.9 bits (76), Expect = 0.024, Method: Composition-based stats.
Identities = 29/84 (34%), Positives = 43/84 (51%), Gaps = 10/84 (11%)
Query: 3 LPVGHCHPAVVKAACTQLALLNTNNRFLH----DNLVLCARKLASLLPDPLSVCFFVNSG 58
L +GH HP V++A LA +L+ + VL A K+ + + FVNSG
Sbjct: 68 LILGHKHPRVLEAVEEALA-----RGWLYGAPGEAEVLLAEKILGYVKRG-GMIRFVNSG 121
Query: 59 SEANDLALRLARVHTNNDDVITQD 82
+EA A+RLAR +T D ++ D
Sbjct: 122 TEATMTAIRLARGYTGRDLILKFD 145
>pdb|3I5T|A Chain A, Crystal Structure Of Aminotransferase Prk07036 From
Rhodobacter Sphaeroides Kd131
pdb|3I5T|B Chain B, Crystal Structure Of Aminotransferase Prk07036 From
Rhodobacter Sphaeroides Kd131
Length = 476
Score = 33.5 bits (75), Expect = 0.031, Method: Composition-based stats.
Identities = 16/37 (43%), Positives = 21/37 (56%)
Query: 38 ARKLASLLPDPLSVCFFVNSGSEANDLALRLARVHTN 74
A K+A+L P L+ FF GS A D ALR + + N
Sbjct: 103 AEKIATLTPGDLNRIFFTTGGSTAVDSALRFSEFYNN 139
>pdb|3NUI|A Chain A, Crystal Structure Of Omega-Transferase From Vibrio
Fluvialis Js17
pdb|3NUI|B Chain B, Crystal Structure Of Omega-Transferase From Vibrio
Fluvialis Js17
Length = 478
Score = 33.1 bits (74), Expect = 0.036, Method: Composition-based stats.
Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 3/70 (4%)
Query: 2 SLPVGHCHPAVVKAACTQLALLNTNNRF---LHDNLVLCARKLASLLPDPLSVCFFVNSG 58
++ G H ++ AA Q + F + D V+ + KL + P F+ NSG
Sbjct: 72 NMVAGFDHKGLIDAAKAQYERFPGYHAFFGRMSDQTVMLSEKLVEVSPFDSGRVFYTNSG 131
Query: 59 SEANDLALRL 68
SEAND +++
Sbjct: 132 SEANDTMVKM 141
>pdb|4GRX|A Chain A, Structure Of An Omega-Aminotransferase From Paracoccus
Denitrificans
pdb|4GRX|B Chain B, Structure Of An Omega-Aminotransferase From Paracoccus
Denitrificans
pdb|4GRX|C Chain C, Structure Of An Omega-Aminotransferase From Paracoccus
Denitrificans
pdb|4GRX|D Chain D, Structure Of An Omega-Aminotransferase From Paracoccus
Denitrificans
Length = 465
Score = 33.1 bits (74), Expect = 0.040, Method: Composition-based stats.
Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 3/70 (4%)
Query: 2 SLPVGHCHPAVVKAACTQLALLNTNNRF---LHDNLVLCARKLASLLPDPLSVCFFVNSG 58
++ G H +++AA Q + F + D V+ + KL + P F+ NSG
Sbjct: 70 NMVAGFDHKGLIEAAKAQYDRFPGYHAFFGRMSDQTVMLSEKLVEVSPFDNGRVFYTNSG 129
Query: 59 SEANDLALRL 68
SEAND +++
Sbjct: 130 SEANDTMVKM 139
>pdb|3A8U|X Chain X, Crystal Structure Of Omega-Amino Acid:pyruvate
Aminotransferase
Length = 449
Score = 33.1 bits (74), Expect = 0.042, Method: Composition-based stats.
Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Query: 6 GHCHPAVVKAACTQLALLNTNNRFL--HDNLVLCARKLASLLPDPLSVCFFVNSGSEAND 63
GH + +A QL+ L+ + F H A K+ L P L+ FF +SGSE
Sbjct: 65 GHTRKEIQEAVAKQLSTLDYSPGFQYGHPLSFQLAEKITDLTPGNLNHVFFTDSGSECAL 124
Query: 64 LALRLARVH 72
A+++ R +
Sbjct: 125 TAVKMVRAY 133
>pdb|2GSA|A Chain A, Crystal Structure Of Glutamate-1-Semialdehyde Aminomutase
(Aminotransferase, Wild-Type Form)
pdb|2GSA|B Chain B, Crystal Structure Of Glutamate-1-Semialdehyde Aminomutase
(Aminotransferase, Wild-Type Form)
pdb|4GSA|A Chain A, Crystal Structure Of Glutamate-1-semialdehyde Aminomutase
(aminotransferase) Reduced With Cyanoborohydrate
pdb|4GSA|B Chain B, Crystal Structure Of Glutamate-1-semialdehyde Aminomutase
(aminotransferase) Reduced With Cyanoborohydrate
pdb|3GSB|A Chain A, Crystal Structure Of Glutamate-1-Semialdehyde Aminomutase
In Complex With Gabaculine
pdb|3GSB|B Chain B, Crystal Structure Of Glutamate-1-Semialdehyde Aminomutase
In Complex With Gabaculine
Length = 432
Score = 32.3 bits (72), Expect = 0.065, Method: Composition-based stats.
Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 12/79 (15%)
Query: 6 GHCHPAVVKAACTQLALLNTNNRFLHDNLVLCARK--LASLLPDP---LSVCFFVNSGSE 60
GH HP V++A + + CA + LA ++ D + + FVNSG+E
Sbjct: 72 GHAHPEVIEALKVAMEKGTSFG-------APCALENVLAEMVNDAVPSIEMVRFVNSGTE 124
Query: 61 ANDLALRLARVHTNNDDVI 79
A LRL R +T D +I
Sbjct: 125 ACMAVLRLMRAYTGRDKII 143
>pdb|3FQA|A Chain A, Gabaculien Complex Of Gabaculine Resistant Gsam Version
pdb|3FQA|B Chain B, Gabaculien Complex Of Gabaculine Resistant Gsam Version
Length = 427
Score = 32.3 bits (72), Expect = 0.065, Method: Composition-based stats.
Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 12/79 (15%)
Query: 6 GHCHPAVVKAACTQLALLNTNNRFLHDNLVLCARK--LASLLPDP---LSVCFFVNSGSE 60
GH HP V++A + + CA + LA ++ D + + FVNSG+E
Sbjct: 67 GHAHPEVIEALKVAMEKGTSFG-------APCALENVLAEMVNDAVPSIEMVRFVNSGTE 119
Query: 61 ANDLALRLARVHTNNDDVI 79
A LRL R +T D +I
Sbjct: 120 ACMAVLRLMRAYTGRDKII 138
>pdb|4E77|A Chain A, 2.0a Crystal Structure Of A Glutamate-1-Semialdehyde
Aminotransferase From Yersinia Pestis Co92
Length = 429
Score = 32.3 bits (72), Expect = 0.074, Method: Composition-based stats.
Identities = 27/80 (33%), Positives = 40/80 (50%), Gaps = 12/80 (15%)
Query: 5 VGHCHPAVVKAACTQLALLNTNNRFLH-----DNLVLCARKLASLLPDPLSVCFFVNSGS 59
+GH HPA+ + A++ R L + V A+ + L+P V VNSG+
Sbjct: 67 LGHNHPAI------RQAVIEAVERGLSFGAPTEXEVKXAQLVTDLVPTXDXV-RXVNSGT 119
Query: 60 EANDLALRLARVHTNNDDVI 79
EA A+RLAR +T D +I
Sbjct: 120 EATXSAIRLARGYTGRDKII 139
>pdb|3N5M|A Chain A, Crystals Structure Of A Bacillus Anthracis
Aminotransferase
pdb|3N5M|B Chain B, Crystals Structure Of A Bacillus Anthracis
Aminotransferase
pdb|3N5M|C Chain C, Crystals Structure Of A Bacillus Anthracis
Aminotransferase
pdb|3N5M|D Chain D, Crystals Structure Of A Bacillus Anthracis
Aminotransferase
Length = 452
Score = 32.0 bits (71), Expect = 0.088, Method: Composition-based stats.
Identities = 19/36 (52%), Positives = 23/36 (63%), Gaps = 3/36 (8%)
Query: 38 ARKLASLLPDPLS---VCFFVNSGSEANDLALRLAR 70
A KLA L + L V FF NSGSEAN+ A ++AR
Sbjct: 93 AIKLAEKLNEWLGGEYVIFFSNSGSEANETAFKIAR 128
>pdb|4E3R|A Chain A, Plp-Bound Aminotransferase Mutant Crystal Structure From
Vibrio Fluvialis
pdb|4E3R|B Chain B, Plp-Bound Aminotransferase Mutant Crystal Structure From
Vibrio Fluvialis
pdb|4E3R|C Chain C, Plp-Bound Aminotransferase Mutant Crystal Structure From
Vibrio Fluvialis
pdb|4E3R|D Chain D, Plp-Bound Aminotransferase Mutant Crystal Structure From
Vibrio Fluvialis
Length = 473
Score = 32.0 bits (71), Expect = 0.096, Method: Composition-based stats.
Identities = 14/39 (35%), Positives = 22/39 (56%)
Query: 30 LHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRL 68
+ D V+ + KL + P F+ NSGSEAND +++
Sbjct: 109 MSDQTVMLSEKLVEVSPFDSGRVFYTNSGSEANDTMVKM 147
>pdb|3FQ8|A Chain A, M248i Mutant Of Gsam
pdb|3FQ8|B Chain B, M248i Mutant Of Gsam
Length = 427
Score = 31.6 bits (70), Expect = 0.13, Method: Composition-based stats.
Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 12/79 (15%)
Query: 6 GHCHPAVVKAACTQLALLNTNNRFLHDNLVLCARK--LASLLPDP---LSVCFFVNSGSE 60
GH HP V++A + + CA + LA ++ D + + FVNSG+E
Sbjct: 67 GHAHPEVIEALKVAMEKGTSFG-------APCALENVLAEMVNDAVPSIEMVRFVNSGTE 119
Query: 61 ANDLALRLARVHTNNDDVI 79
A LR+ R +T D +I
Sbjct: 120 ACMAVLRIMRAYTGRDKII 138
>pdb|3FQ7|A Chain A, Gabaculine Complex Of Gsam
pdb|3FQ7|B Chain B, Gabaculine Complex Of Gsam
pdb|3USF|A Chain A, Crystal Structure Of Dava-4
pdb|3USF|B Chain B, Crystal Structure Of Dava-4
Length = 427
Score = 31.6 bits (70), Expect = 0.13, Method: Composition-based stats.
Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 12/79 (15%)
Query: 6 GHCHPAVVKAACTQLALLNTNNRFLHDNLVLCARK--LASLLPDP---LSVCFFVNSGSE 60
GH HP V++A + + CA + LA ++ D + + FVNSG+E
Sbjct: 67 GHAHPEVIEALKVAMEKGTSFG-------APCALENVLAEMVNDAVPSIEMVRFVNSGTE 119
Query: 61 ANDLALRLARVHTNNDDVI 79
A LR+ R +T D +I
Sbjct: 120 ACMAVLRIMRAYTGRDKII 138
>pdb|2HOY|A Chain A, Inter-Subunit Signaling In Gsam
pdb|2HOY|B Chain B, Inter-Subunit Signaling In Gsam
pdb|2HOZ|A Chain A, Inter-Subunit Signaling In Gsam
pdb|2HOZ|B Chain B, Inter-Subunit Signaling In Gsam
pdb|2HP1|A Chain A, Inter-Subunit Signaling In Gsam
pdb|2HP1|B Chain B, Inter-Subunit Signaling In Gsam
pdb|2HP2|A Chain A, Inter-Subunit Signaling In Gsam
pdb|2HP2|B Chain B, Inter-Subunit Signaling In Gsam
Length = 432
Score = 31.6 bits (70), Expect = 0.13, Method: Composition-based stats.
Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 12/79 (15%)
Query: 6 GHCHPAVVKAACTQLALLNTNNRFLHDNLVLCARK--LASLLPDP---LSVCFFVNSGSE 60
GH HP V++A + + CA + LA ++ D + + FVNSG+E
Sbjct: 72 GHAHPEVIEALKVAMEKGTSFG-------APCALENVLAEMVNDAVPSIEMVRFVNSGTE 124
Query: 61 ANDLALRLARVHTNNDDVI 79
A LR+ R +T D +I
Sbjct: 125 ACMAVLRIMRAYTGRDKII 143
>pdb|3R4T|A Chain A, Crystal Structure Of 4-Aminobutyrate Aminotransferase Gabt
From Mycobacterium Marinum Covalently Bound To Pyridoxal
Phosphate
Length = 467
Score = 30.8 bits (68), Expect = 0.22, Method: Composition-based stats.
Identities = 25/84 (29%), Positives = 43/84 (51%), Gaps = 9/84 (10%)
Query: 5 VGHCHPAVVKAACTQLALLNTNNRFL---HDNLVLCARKLASLLP---DPLSVCFFVNSG 58
+G+ P VV A Q+ T+ F+ ++ V A +L + P + +V F NSG
Sbjct: 92 IGNSAPRVVDAVRDQVEQF-THTCFMVTPYEQYVAVAEQLNRITPGSGEKRTVLF--NSG 148
Query: 59 SEANDLALRLARVHTNNDDVITQD 82
+EA + ++++AR HT V+ D
Sbjct: 149 AEAVENSIKVARAHTRKQAVVAFD 172
>pdb|4E3Q|A Chain A, Pmp-Bound Form Of Aminotransferase Crystal Structure From
Vibrio Fluvialis
pdb|4E3Q|B Chain B, Pmp-Bound Form Of Aminotransferase Crystal Structure From
Vibrio Fluvialis
pdb|4E3Q|C Chain C, Pmp-Bound Form Of Aminotransferase Crystal Structure From
Vibrio Fluvialis
pdb|4E3Q|D Chain D, Pmp-Bound Form Of Aminotransferase Crystal Structure From
Vibrio Fluvialis
Length = 473
Score = 30.4 bits (67), Expect = 0.24, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 28/65 (43%), Gaps = 3/65 (4%)
Query: 6 GHCHPAVVKAACTQLALLNTNNRFL---HDNLVLCARKLASLLPDPLSVCFFVNSGSEAN 62
G H ++ AA Q + F D V + KL + P F+ NSGSEAN
Sbjct: 82 GFDHKGLIDAAKAQYERFPGYHAFFGRXSDQTVXLSEKLVEVSPFDSGRVFYTNSGSEAN 141
Query: 63 DLALR 67
D ++
Sbjct: 142 DTXVK 146
>pdb|2E7U|A Chain A, Crystal Structure Of Glutamate-1-Semialdehyde
2,1-Aminomutase From Thermus Thermophilus Hb8
Length = 424
Score = 30.0 bits (66), Expect = 0.32, Method: Composition-based stats.
Identities = 27/86 (31%), Positives = 31/86 (36%), Gaps = 32/86 (37%)
Query: 3 LPVGHCHPAVVKAACTQLALLNTNNRFLHDNLVLCARKLASLLPDPLSVCF--------- 53
L +GH HP V+ L R L P PL V
Sbjct: 64 LILGHAHPKVLARVRETLE-----------------RGLTFGAPSPLEVALAKKVKRAYP 106
Query: 54 ------FVNSGSEANDLALRLARVHT 73
FVNSG+EA ALRLAR +T
Sbjct: 107 FVDLVRFVNSGTEATMSALRLARGYT 132
>pdb|1SZK|A Chain A, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: E211s
pdb|1SZK|B Chain B, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: E211s
pdb|1SZK|C Chain C, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: E211s
pdb|1SZK|D Chain D, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: E211s
Length = 426
Score = 30.0 bits (66), Expect = 0.36, Method: Composition-based stats.
Identities = 27/80 (33%), Positives = 35/80 (43%), Gaps = 3/80 (3%)
Query: 3 LPVGHCHPAVVKAACTQLALLN-TNNRFL--HDNLVLCARKLASLLPDPLSVCFFVNSGS 59
L GH HP VV A QL L+ T + L L LC + D V +GS
Sbjct: 53 LNTGHLHPKVVAAVEAQLKKLSHTCFQVLAYEPYLELCEIMNQKVPGDFAKKTLLVTTGS 112
Query: 60 EANDLALRLARVHTNNDDVI 79
EA + A+++AR T I
Sbjct: 113 EAVENAVKIARAATKRSGTI 132
>pdb|1SZS|A Chain A, The Structure Of Gamma-aminobutyrate Aminotransferase
Mutant: I50q
pdb|1SZS|B Chain B, The Structure Of Gamma-aminobutyrate Aminotransferase
Mutant: I50q
pdb|1SZS|C Chain C, The Structure Of Gamma-aminobutyrate Aminotransferase
Mutant: I50q
pdb|1SZS|D Chain D, The Structure Of Gamma-aminobutyrate Aminotransferase
Mutant: I50q
Length = 426
Score = 30.0 bits (66), Expect = 0.36, Method: Composition-based stats.
Identities = 27/80 (33%), Positives = 35/80 (43%), Gaps = 3/80 (3%)
Query: 3 LPVGHCHPAVVKAACTQLALLN-TNNRFL--HDNLVLCARKLASLLPDPLSVCFFVNSGS 59
L GH HP VV A QL L+ T + L L LC + D V +GS
Sbjct: 53 LNTGHLHPKVVAAVEAQLKKLSHTCFQVLAYEPYLELCEIMNQKVPGDFAKKTLLVTTGS 112
Query: 60 EANDLALRLARVHTNNDDVI 79
EA + A+++AR T I
Sbjct: 113 EAVENAVKIARAATKRSGTI 132
>pdb|1SZU|A Chain A, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: V241a
pdb|1SZU|B Chain B, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: V241a
pdb|1SZU|C Chain C, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: V241a
pdb|1SZU|D Chain D, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: V241a
Length = 426
Score = 30.0 bits (66), Expect = 0.36, Method: Composition-based stats.
Identities = 27/80 (33%), Positives = 35/80 (43%), Gaps = 3/80 (3%)
Query: 3 LPVGHCHPAVVKAACTQLALLN-TNNRFL--HDNLVLCARKLASLLPDPLSVCFFVNSGS 59
L GH HP VV A QL L+ T + L L LC + D V +GS
Sbjct: 53 LNTGHLHPKVVAAVEAQLKKLSHTCFQVLAYEPYLELCEIMNQKVPGDFAKKTLLVTTGS 112
Query: 60 EANDLALRLARVHTNNDDVI 79
EA + A+++AR T I
Sbjct: 113 EAVENAVKIARAATKRSGTI 132
>pdb|1SF2|A Chain A, Structure Of E. Coli Gamma-Aminobutyrate Aminotransferase
pdb|1SF2|B Chain B, Structure Of E. Coli Gamma-Aminobutyrate Aminotransferase
pdb|1SF2|C Chain C, Structure Of E. Coli Gamma-Aminobutyrate Aminotransferase
pdb|1SF2|D Chain D, Structure Of E. Coli Gamma-Aminobutyrate Aminotransferase
pdb|1SFF|A Chain A, Structure Of Gamma-Aminobutyrate Aminotransferase Complex
With Aminooxyacetate
pdb|1SFF|B Chain B, Structure Of Gamma-Aminobutyrate Aminotransferase Complex
With Aminooxyacetate
pdb|1SFF|C Chain C, Structure Of Gamma-Aminobutyrate Aminotransferase Complex
With Aminooxyacetate
pdb|1SFF|D Chain D, Structure Of Gamma-Aminobutyrate Aminotransferase Complex
With Aminooxyacetate
Length = 426
Score = 30.0 bits (66), Expect = 0.36, Method: Composition-based stats.
Identities = 27/80 (33%), Positives = 35/80 (43%), Gaps = 3/80 (3%)
Query: 3 LPVGHCHPAVVKAACTQLALLN-TNNRFL--HDNLVLCARKLASLLPDPLSVCFFVNSGS 59
L GH HP VV A QL L+ T + L L LC + D V +GS
Sbjct: 53 LNTGHLHPKVVAAVEAQLKKLSHTCFQVLAYEPYLELCEIMNQKVPGDFAKKTLLVTTGS 112
Query: 60 EANDLALRLARVHTNNDDVI 79
EA + A+++AR T I
Sbjct: 113 EAVENAVKIARAATKRSGTI 132
>pdb|2EH6|A Chain A, Crystal Structure Of Acetylornithine Aminotransferase From
Aquifex Aeolicus Vf5
pdb|2EH6|B Chain B, Crystal Structure Of Acetylornithine Aminotransferase From
Aquifex Aeolicus Vf5
Length = 375
Score = 29.6 bits (65), Expect = 0.40, Method: Composition-based stats.
Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
Query: 5 VGHCHPAVVKAACTQL-ALLNTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEAND 63
+GH +P + +A Q+ LL+ +N + + A KL V FF NSG+E+ +
Sbjct: 42 LGHAYPKLTEALKEQVEKLLHVSNLYENPWQEELAHKLVKHFWTEGKV-FFANSGTESVE 100
Query: 64 LALRLAR 70
A++LAR
Sbjct: 101 AAIKLAR 107
>pdb|3RUY|A Chain A, Crystal Structure Of The Ornithine-Oxo Acid Transaminase
Rocd From Bacillus Anthracis
pdb|3RUY|B Chain B, Crystal Structure Of The Ornithine-Oxo Acid Transaminase
Rocd From Bacillus Anthracis
Length = 392
Score = 29.6 bits (65), Expect = 0.47, Method: Composition-based stats.
Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Query: 6 GHCHPAVVKAACTQLALLNTNNRFLH-DNLVLCARKLASLLPDPLSVCFFVNSGSEANDL 64
GH HP ++ A Q + +R H D L K+A L + + +N+G+EA +
Sbjct: 51 GHRHPKIINALIDQANRVTLTSRAFHSDQLGPWYEKVAKLTNKEMVLP--MNTGAEAVET 108
Query: 65 ALRLAR 70
A++ AR
Sbjct: 109 AIKTAR 114
>pdb|3K28|A Chain A, Crystal Structure Of A Glutamate-1-Semialdehyde
Aminotransferase From Bacillus Anthracis With Bound
Pyridoxal 5'phosphate
pdb|3K28|B Chain B, Crystal Structure Of A Glutamate-1-Semialdehyde
Aminotransferase From Bacillus Anthracis With Bound
Pyridoxal 5'phosphate
pdb|3K28|C Chain C, Crystal Structure Of A Glutamate-1-Semialdehyde
Aminotransferase From Bacillus Anthracis With Bound
Pyridoxal 5'phosphate
pdb|3K28|D Chain D, Crystal Structure Of A Glutamate-1-Semialdehyde
Aminotransferase From Bacillus Anthracis With Bound
Pyridoxal 5'phosphate
Length = 429
Score = 29.6 bits (65), Expect = 0.50, Method: Composition-based stats.
Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
Query: 40 KLASLLPD---PLSVCFFVNSGSEANDLALRLARVHTNNDDVI 79
KLA L+ + + + VNSG+EA ALRLAR +T + ++
Sbjct: 97 KLAKLVIERVPSIEIVRXVNSGTEATXSALRLARGYTGRNKIL 139
>pdb|2CY8|A Chain A, Crystal Structure Of D-Phenylglycine Aminotransferase
(D-Phgat) From Pseudomonas Strutzeri St-201
Length = 453
Score = 28.5 bits (62), Expect = 1.1, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 32/72 (44%), Gaps = 2/72 (2%)
Query: 2 SLPVGHCHPAVVKAACTQLALLNTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEA 61
+L +GH HP V AA + H V A ++ + P + F SG+E
Sbjct: 68 ALVLGHGHPRV-NAAIAEALSHGVQYAASHPLEVRWAERIVAAFPS-IRKLRFTGSGTET 125
Query: 62 NDLALRLARVHT 73
LALR+AR T
Sbjct: 126 TLLALRVARAFT 137
>pdb|2EO5|A Chain A, Crystal Structure Of 4-Aminobutyrate Aminotransferase From
Sulfolobus Tokodaii Strain7
Length = 419
Score = 28.1 bits (61), Expect = 1.3, Method: Composition-based stats.
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
Query: 9 HPAVVKAACTQLALLN--TNNRFLHDNLVLCARKLASLLPDPLSV-CFFVNSGSEANDLA 65
HP V+K Q+ L N F + + A+KL + P FF NSG+EA + +
Sbjct: 61 HPEVIKIGIEQMQKLAHAAANDFYNIPQLELAKKLVTYSPGNFQKKVFFSNSGTEAIEAS 120
Query: 66 LRLAR 70
+++ +
Sbjct: 121 IKVVK 125
>pdb|3AV0|A Chain A, Crystal Structure Of Mre11-Rad50 Bound To Atp S
Length = 386
Score = 27.3 bits (59), Expect = 2.0, Method: Composition-based stats.
Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 15/63 (23%)
Query: 23 LNTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDL-----ALRLA-----RVH 72
L+ + ++D+ LC +K+ + PD + ++SG NDL ALR+A ++H
Sbjct: 38 LDDREKDIYDSFKLCIKKILEIKPDVV-----LHSGDLFNDLRPPVKALRIAMQAFKKLH 92
Query: 73 TNN 75
NN
Sbjct: 93 ENN 95
>pdb|3AUZ|A Chain A, Crystal Structure Of Mre11 With Manganese
Length = 333
Score = 27.3 bits (59), Expect = 2.0, Method: Composition-based stats.
Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 15/63 (23%)
Query: 23 LNTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDL-----ALRLA-----RVH 72
L+ + ++D+ LC +K+ + PD + ++SG NDL ALR+A ++H
Sbjct: 38 LDDREKDIYDSFKLCIKKILEIKPDVV-----LHSGDLFNDLRPPVKALRIAMQAFKKLH 92
Query: 73 TNN 75
NN
Sbjct: 93 ENN 95
>pdb|3BS8|A Chain A, Crystal Structure Of Glutamate 1-Semialdehyde
Aminotransferase Complexed With
Pyridoxamine-5'-Phosphate From Bacillus Subtilis
Length = 438
Score = 27.3 bits (59), Expect = 2.4, Method: Composition-based stats.
Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
Query: 40 KLASLLPD---PLSVCFFVNSGSEANDLALRLARVHTNNDDVI 79
+LA L+ D + + V+SG+EA ALRLAR +T + ++
Sbjct: 105 ELAKLVIDRVPSVEIVRMVSSGTEATMSALRLARGYTGRNKIL 147
>pdb|3QW9|A Chain A, Crystal Structure Of Betaglycan Zp-C Domain
pdb|3QW9|B Chain B, Crystal Structure Of Betaglycan Zp-C Domain
Length = 176
Score = 26.9 bits (58), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 21/42 (50%)
Query: 3 LPVGHCHPAVVKAACTQLALLNTNNRFLHDNLVLCARKLASL 44
P+ H + + ++ NT+ FLH L LC+RK SL
Sbjct: 90 FPIPHAEVDKKRFSFLFKSVFNTSLLFLHCELTLCSRKKGSL 131
>pdb|3I4J|A Chain A, Crystal Structure Of Aminotransferase, Class Iii From
Deinococcus Radiodurans
pdb|3I4J|B Chain B, Crystal Structure Of Aminotransferase, Class Iii From
Deinococcus Radiodurans
pdb|3I4J|C Chain C, Crystal Structure Of Aminotransferase, Class Iii From
Deinococcus Radiodurans
pdb|3I4J|D Chain D, Crystal Structure Of Aminotransferase, Class Iii From
Deinococcus Radiodurans
Length = 430
Score = 26.6 bits (57), Expect = 4.2, Method: Composition-based stats.
Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
Query: 5 VGHCHPAVVKAACTQLALLN--TNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEAN 62
+GH V + Q A L ++F D L A +LA + P + V+ GSEA
Sbjct: 43 IGHGRAEVGERMAAQAARLPFVHGSQFSSDVLEEYAGRLARFVGLPTFRFWAVSGGSEAT 102
Query: 63 DLALRLAR 70
+ A++LAR
Sbjct: 103 ESAVKLAR 110
>pdb|3NX3|A Chain A, Crystal Structure Of Acetylornithine Aminotransferase
(Argd) From Campylobacter Jejuni
pdb|3NX3|B Chain B, Crystal Structure Of Acetylornithine Aminotransferase
(Argd) From Campylobacter Jejuni
Length = 395
Score = 25.8 bits (55), Expect = 6.8, Method: Composition-based stats.
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Query: 22 LLNTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVHTNNDDV 78
LL+T+N + ++N+ A L FF NSG+E+ + A + AR + N V
Sbjct: 68 LLHTSNLYYNENIA--AAAKNLAKASALERVFFTNSGTESIEGAXKTARKYAFNKGV 122
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.134 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,297,460
Number of Sequences: 62578
Number of extensions: 65701
Number of successful extensions: 253
Number of sequences better than 100.0: 66
Number of HSP's better than 100.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 178
Number of HSP's gapped (non-prelim): 66
length of query: 83
length of database: 14,973,337
effective HSP length: 51
effective length of query: 32
effective length of database: 11,781,859
effective search space: 377019488
effective search space used: 377019488
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 45 (21.9 bits)