Query psy6206
Match_columns 83
No_of_seqs 131 out of 1118
Neff 8.7
Searched_HMMs 46136
Date Fri Aug 16 20:26:20 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6206.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6206hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG4992 ArgD Ornithine/acetylo 100.0 1.8E-28 3.9E-33 166.3 9.5 82 1-83 52-137 (404)
2 COG0160 GabT 4-aminobutyrate a 99.9 6.4E-26 1.4E-30 156.3 9.8 83 1-83 66-151 (447)
3 KOG1404|consensus 99.9 6E-26 1.3E-30 153.1 7.8 83 1-83 60-143 (442)
4 PRK06062 hypothetical protein; 99.9 1.6E-25 3.5E-30 155.0 9.8 83 1-83 63-146 (451)
5 COG0161 BioA Adenosylmethionin 99.9 2.7E-25 5.9E-30 152.9 8.5 83 1-83 54-145 (449)
6 PRK06918 4-aminobutyrate amino 99.9 1.8E-24 3.8E-29 149.6 10.0 83 1-83 64-149 (451)
7 PRK08360 4-aminobutyrate amino 99.9 2.3E-24 5E-29 149.0 10.0 83 1-83 51-135 (443)
8 TIGR03372 putres_am_tran putre 99.9 1.9E-24 4E-29 149.5 9.4 83 1-83 85-171 (442)
9 PRK05965 hypothetical protein; 99.9 2.3E-24 5.1E-29 149.5 9.8 83 1-83 56-147 (459)
10 PRK05639 4-aminobutyrate amino 99.9 2.5E-24 5.5E-29 149.3 9.9 83 1-83 63-147 (457)
11 PRK07482 hypothetical protein; 99.9 4E-24 8.7E-29 148.3 10.0 83 1-83 60-151 (461)
12 PRK07495 4-aminobutyrate amino 99.9 4.8E-24 1E-28 146.7 9.8 83 1-83 50-135 (425)
13 PRK05964 adenosylmethionine--8 99.9 5.5E-24 1.2E-28 146.0 9.9 83 1-83 52-142 (423)
14 TIGR00700 GABAtrnsam 4-aminobu 99.9 5.7E-24 1.2E-28 145.9 9.9 83 1-83 43-128 (420)
15 PRK08593 4-aminobutyrate amino 99.9 5.3E-24 1.2E-28 147.2 9.8 83 1-83 52-137 (445)
16 PRK05769 4-aminobutyrate amino 99.9 6.7E-24 1.5E-28 146.6 10.0 83 1-83 64-149 (441)
17 PRK11522 putrescine--2-oxoglut 99.9 5.7E-24 1.2E-28 147.6 9.4 83 1-83 92-178 (459)
18 PRK07986 adenosylmethionine--8 99.9 6.8E-24 1.5E-28 146.2 9.6 83 1-83 53-142 (428)
19 PRK06173 adenosylmethionine--8 99.9 7.7E-24 1.7E-28 145.9 9.7 83 1-83 54-144 (429)
20 PRK07483 hypothetical protein; 99.9 8.5E-24 1.8E-28 146.1 9.9 83 1-83 40-130 (443)
21 PRK06777 4-aminobutyrate amino 99.9 8.2E-24 1.8E-28 145.3 9.6 83 1-83 50-135 (421)
22 PRK00615 glutamate-1-semialdeh 99.9 1.3E-23 2.8E-28 145.0 10.3 82 1-83 63-144 (433)
23 PRK06082 4-aminobutyrate amino 99.9 1.1E-23 2.4E-28 146.2 9.9 83 1-83 81-164 (459)
24 PRK08117 4-aminobutyrate amino 99.9 1.8E-23 3.9E-28 143.8 10.2 83 1-83 53-137 (433)
25 PRK13360 omega amino acid--pyr 99.9 1.3E-23 2.8E-28 145.2 9.6 83 1-83 56-146 (442)
26 PRK12389 glutamate-1-semialdeh 99.9 1.8E-23 4E-28 143.8 10.2 81 1-83 63-143 (428)
27 PRK06917 hypothetical protein; 99.9 2E-23 4.3E-28 144.4 10.0 83 1-83 41-131 (447)
28 PRK09792 4-aminobutyrate trans 99.9 2.3E-23 4.9E-28 143.1 10.2 83 1-83 50-135 (421)
29 PRK07030 adenosylmethionine--8 99.9 1.9E-23 4.1E-28 145.2 9.9 83 1-83 57-147 (466)
30 PRK05630 adenosylmethionine--8 99.9 1.7E-23 3.6E-28 144.0 9.5 83 1-83 50-140 (422)
31 PLN02482 glutamate-1-semialdeh 99.9 2.4E-23 5.2E-28 145.0 10.3 81 1-83 109-189 (474)
32 PRK06916 adenosylmethionine--8 99.9 2.5E-23 5.4E-28 144.4 9.7 83 1-83 66-156 (460)
33 PRK07481 hypothetical protein; 99.9 2.4E-23 5.1E-28 144.1 9.5 83 1-83 52-144 (449)
34 PRK06148 hypothetical protein; 99.9 2.6E-23 5.5E-28 154.4 10.1 82 2-83 633-714 (1013)
35 PRK09221 beta alanine--pyruvat 99.9 3.5E-23 7.7E-28 143.1 9.8 83 1-83 59-149 (445)
36 TIGR00709 dat 2,4-diaminobutyr 99.9 3.5E-23 7.6E-28 143.0 9.8 83 1-83 49-136 (442)
37 PRK07036 hypothetical protein; 99.9 3.6E-23 7.9E-28 143.8 9.7 83 1-83 61-152 (466)
38 PRK07678 aminotransferase; Val 99.9 3.8E-23 8.1E-28 143.2 9.6 82 1-83 57-145 (451)
39 PRK07480 putative aminotransfe 99.9 3.9E-23 8.5E-28 143.3 9.7 83 1-83 60-151 (456)
40 PRK06541 hypothetical protein; 99.9 3.9E-23 8.4E-28 143.5 9.5 83 1-83 62-152 (460)
41 PRK08742 adenosylmethionine--8 99.9 4.9E-23 1.1E-27 143.4 9.8 83 1-83 74-169 (472)
42 PF00202 Aminotran_3: Aminotra 99.9 3.6E-23 7.8E-28 138.9 8.7 83 1-83 26-116 (339)
43 PRK06105 aminotransferase; Pro 99.9 5.8E-23 1.3E-27 142.5 9.9 83 1-83 58-149 (460)
44 PRK06943 adenosylmethionine--8 99.9 6.7E-23 1.4E-27 142.1 9.8 83 1-83 64-154 (453)
45 PRK07046 aminotransferase; Val 99.9 9.6E-23 2.1E-27 141.3 9.9 80 1-83 85-164 (453)
46 PRK06058 4-aminobutyrate amino 99.9 1.1E-22 2.4E-27 140.5 9.8 83 1-83 66-151 (443)
47 PRK04612 argD acetylornithine 99.9 1.3E-22 2.8E-27 139.1 9.8 82 1-83 50-139 (408)
48 PRK08297 L-lysine aminotransfe 99.9 1.4E-22 3.1E-27 140.0 9.7 83 1-83 55-156 (443)
49 PRK04013 argD acetylornithine/ 99.9 1.8E-22 4E-27 136.8 9.9 81 1-83 34-115 (364)
50 PRK06931 diaminobutyrate--2-ox 99.9 2.1E-22 4.5E-27 139.8 9.7 83 1-83 68-155 (459)
51 PRK09264 diaminobutyrate--2-ox 99.9 2.7E-22 5.8E-27 137.9 10.1 83 1-83 49-137 (425)
52 PRK06938 diaminobutyrate--2-ox 99.9 2.9E-22 6.2E-27 139.3 9.9 83 1-83 73-161 (464)
53 PLN00144 acetylornithine trans 99.9 2.5E-22 5.3E-27 136.6 9.1 81 1-83 25-119 (382)
54 PRK06209 glutamate-1-semialdeh 99.9 3.5E-22 7.6E-27 137.6 9.9 79 1-81 58-136 (431)
55 TIGR03251 LAT_fam L-lysine 6-t 99.9 4.6E-22 1E-26 137.1 9.5 83 1-83 48-149 (431)
56 TIGR00699 GABAtrns_euk 4-amino 99.9 4.6E-22 1E-26 138.3 9.5 73 1-73 68-146 (464)
57 COG0001 HemL Glutamate-1-semia 99.9 7E-22 1.5E-26 135.3 9.7 81 1-83 63-143 (432)
58 TIGR02407 ectoine_ectB diamino 99.9 6.8E-22 1.5E-26 135.6 9.7 83 1-83 45-133 (412)
59 PRK06149 hypothetical protein; 99.9 1.2E-21 2.5E-26 145.2 10.1 81 3-83 595-675 (972)
60 PLN02760 4-aminobutyrate:pyruv 99.9 1.6E-21 3.5E-26 136.6 9.7 83 1-83 99-191 (504)
61 PRK12403 putative aminotransfe 99.9 3.2E-21 7E-26 133.9 9.5 83 1-83 64-155 (460)
62 TIGR00508 bioA adenosylmethion 99.9 4.1E-21 9E-26 132.3 9.4 83 1-83 55-145 (427)
63 KOG1401|consensus 99.8 1.4E-20 3E-25 127.7 9.2 83 1-83 66-156 (433)
64 PRK12381 bifunctional succinyl 99.8 1.9E-20 4.1E-25 128.0 9.5 81 1-83 49-136 (406)
65 TIGR03246 arg_catab_astC succi 99.8 2.2E-20 4.8E-25 127.3 9.7 81 1-83 45-132 (397)
66 PLN02974 adenosylmethionine-8- 99.8 1.4E-20 3.1E-25 137.4 9.3 83 1-83 375-480 (817)
67 PRK04073 rocD ornithine--oxo-a 99.8 3.5E-20 7.6E-25 126.1 9.6 81 1-83 50-139 (396)
68 PLN02624 ornithine-delta-amino 99.8 5.5E-20 1.2E-24 128.1 9.8 81 1-83 85-174 (474)
69 PRK08088 4-aminobutyrate amino 99.8 6.6E-20 1.4E-24 126.0 10.0 83 1-83 51-136 (425)
70 TIGR00713 hemL glutamate-1-sem 99.8 7.7E-20 1.7E-24 125.2 10.1 81 1-83 58-138 (423)
71 KOG1403|consensus 99.8 4.9E-20 1.1E-24 122.3 7.9 80 3-83 57-136 (452)
72 PRK00062 glutamate-1-semialdeh 99.8 1.6E-19 3.4E-24 124.3 9.9 81 1-83 60-140 (426)
73 PRK03715 argD acetylornithine 99.8 1.7E-19 3.8E-24 123.2 9.8 81 1-83 46-132 (395)
74 PRK01278 argD acetylornithine 99.8 1.5E-18 3.2E-23 117.7 9.7 81 1-83 41-128 (389)
75 PRK05093 argD bifunctional N-s 99.8 2E-18 4.4E-23 117.7 9.6 81 1-83 50-137 (403)
76 PRK00854 rocD ornithine--oxo-a 99.8 1E-17 2.3E-22 113.8 9.8 81 1-83 51-140 (401)
77 PRK02936 argD acetylornithine 99.7 2.9E-17 6.2E-22 110.9 9.8 81 1-83 39-120 (377)
78 TIGR01885 Orn_aminotrans ornit 99.7 4.3E-17 9.3E-22 111.1 9.7 81 1-83 47-136 (401)
79 PTZ00125 ornithine aminotransf 99.7 3.4E-16 7.3E-21 106.3 9.7 81 1-83 41-130 (400)
80 cd00610 OAT_like Acetyl ornith 99.6 1.9E-15 4.1E-20 102.6 9.9 82 2-83 47-130 (413)
81 PRK03244 argD acetylornithine 99.6 2.2E-15 4.8E-20 102.4 9.9 81 1-82 53-135 (398)
82 PRK04260 acetylornithine amino 99.6 3.3E-15 7.2E-20 101.0 9.6 79 1-83 39-118 (375)
83 KOG1402|consensus 99.6 2E-15 4.2E-20 101.2 7.4 70 2-73 70-140 (427)
84 PRK02627 acetylornithine amino 99.6 1.2E-14 2.6E-19 98.4 9.3 80 1-82 49-134 (396)
85 TIGR00707 argD acetylornithine 99.4 4.7E-12 1E-16 85.3 9.6 80 1-82 37-122 (379)
86 PRK07505 hypothetical protein; 99.3 3.1E-11 6.7E-16 82.5 9.6 78 2-82 54-141 (402)
87 KOG1405|consensus 99.2 1.7E-11 3.8E-16 83.2 3.0 73 1-73 86-164 (484)
88 PRK13393 5-aminolevulinate syn 98.8 7.4E-08 1.6E-12 66.0 8.6 68 5-74 56-131 (406)
89 PRK09064 5-aminolevulinate syn 98.6 9.8E-07 2.1E-11 60.4 9.3 68 4-73 56-130 (407)
90 TIGR01821 5aminolev_synth 5-am 98.5 1.6E-06 3.6E-11 59.2 9.0 63 8-72 60-128 (402)
91 PRK13520 L-tyrosine decarboxyl 98.2 2.5E-05 5.5E-10 52.5 8.9 78 5-82 29-111 (371)
92 COG1104 NifS Cysteine sulfinat 98.2 9.3E-06 2E-10 56.0 6.6 72 9-80 14-96 (386)
93 cd00613 GDC-P Glycine cleavage 98.1 1.9E-05 4.1E-10 53.6 6.9 78 2-80 27-113 (398)
94 PRK07179 hypothetical protein; 98.1 2.9E-05 6.2E-10 53.3 7.7 61 8-70 69-135 (407)
95 cd06454 KBL_like KBL_like; thi 97.9 0.00025 5.5E-09 47.2 9.2 66 2-69 9-81 (349)
96 PRK05958 8-amino-7-oxononanoat 97.7 0.00063 1.4E-08 45.8 9.3 63 4-68 49-118 (385)
97 PRK13392 5-aminolevulinate syn 97.7 0.00058 1.3E-08 46.9 8.6 65 8-74 61-132 (410)
98 KOG1549|consensus 97.6 0.00057 1.2E-08 47.8 8.4 78 5-82 52-138 (428)
99 PLN02822 serine palmitoyltrans 97.5 0.00084 1.8E-08 47.5 8.3 70 8-82 124-199 (481)
100 TIGR01825 gly_Cac_T_rel pyrido 97.5 0.0023 4.9E-08 43.3 9.7 64 4-69 43-113 (385)
101 TIGR03402 FeS_nifS cysteine de 97.4 0.0037 8E-08 42.4 10.0 76 5-80 8-91 (379)
102 TIGR00858 bioF 8-amino-7-oxono 97.4 0.0033 7.2E-08 41.9 9.5 65 3-69 25-96 (360)
103 PLN03032 serine decarboxylase; 97.3 0.0018 3.9E-08 44.7 7.4 71 9-79 36-115 (374)
104 TIGR03235 DNA_S_dndA cysteine 97.2 0.0075 1.6E-07 40.5 9.6 77 5-81 7-94 (353)
105 PLN02651 cysteine desulfurase 97.1 0.0048 1E-07 41.8 8.1 76 6-81 9-94 (364)
106 PRK05937 8-amino-7-oxononanoat 97.1 0.0099 2.2E-07 40.5 9.2 72 5-81 15-100 (370)
107 TIGR02006 IscS cysteine desulf 96.9 0.0093 2E-07 41.0 7.8 65 7-71 14-86 (402)
108 PRK02948 cysteine desulfurase; 96.8 0.036 7.9E-07 37.6 10.2 67 4-70 8-81 (381)
109 PRK06225 aspartate aminotransf 96.8 0.019 4.2E-07 39.0 8.5 61 8-69 42-103 (380)
110 PRK06939 2-amino-3-ketobutyrat 96.7 0.034 7.4E-07 37.6 9.3 64 4-69 52-122 (397)
111 PF00266 Aminotran_5: Aminotra 96.6 0.018 3.8E-07 39.0 7.5 78 4-81 7-94 (371)
112 TIGR03576 pyridox_MJ0158 pyrid 96.6 0.02 4.3E-07 39.0 7.6 57 8-68 34-90 (346)
113 TIGR01788 Glu-decarb-GAD gluta 96.5 0.018 3.9E-07 40.5 7.2 65 7-71 52-123 (431)
114 cd06502 TA_like Low-specificit 96.4 0.032 6.9E-07 37.0 7.8 61 4-69 7-67 (338)
115 PRK09331 Sep-tRNA:Cys-tRNA syn 96.4 0.05 1.1E-06 37.3 8.7 63 5-69 29-98 (387)
116 PRK14012 cysteine desulfurase; 96.3 0.11 2.3E-06 35.8 10.1 65 6-70 13-87 (404)
117 cd01494 AAT_I Aspartate aminot 96.3 0.02 4.3E-07 33.8 5.5 44 35-80 3-46 (170)
118 TIGR01822 2am3keto_CoA 2-amino 96.2 0.098 2.1E-06 35.6 9.4 63 4-68 48-117 (393)
119 PRK02769 histidine decarboxyla 96.1 0.027 5.8E-07 39.0 6.3 49 32-80 65-115 (380)
120 TIGR01437 selA_rel uncharacter 96.1 0.049 1.1E-06 37.2 7.4 60 4-69 19-80 (363)
121 PRK03158 histidinol-phosphate 96.1 0.068 1.5E-06 36.0 7.9 58 8-68 43-100 (359)
122 COG2008 GLY1 Threonine aldolas 96.0 0.034 7.4E-07 38.2 6.3 59 8-70 12-71 (342)
123 cd06452 SepCysS Sep-tRNA:Cys-t 96.0 0.086 1.9E-06 35.6 8.1 62 6-69 11-79 (361)
124 TIGR01141 hisC histidinol-phos 95.9 0.06 1.3E-06 36.0 7.0 58 9-69 34-91 (346)
125 PF01041 DegT_DnrJ_EryC1: DegT 95.7 0.092 2E-06 35.8 7.4 64 11-79 6-69 (363)
126 cd00616 AHBA_syn 3-amino-5-hyd 95.7 0.064 1.4E-06 35.8 6.5 47 31-80 17-63 (352)
127 cd06453 SufS_like Cysteine des 95.6 0.27 5.7E-06 33.2 9.2 66 6-71 9-83 (373)
128 PF01212 Beta_elim_lyase: Beta 95.6 0.043 9.2E-07 36.7 5.2 58 8-70 7-65 (290)
129 cd00611 PSAT_like Phosphoserin 95.4 0.083 1.8E-06 35.9 6.3 60 9-68 11-82 (355)
130 PLN02721 threonine aldolase 95.3 0.13 2.7E-06 34.3 6.9 59 8-70 18-76 (353)
131 PRK10874 cysteine sulfinate de 95.3 0.48 1E-05 32.4 9.8 64 6-69 29-101 (401)
132 TIGR03812 tyr_de_CO2_Arch tyro 95.3 0.31 6.7E-06 32.8 8.7 64 8-71 32-98 (373)
133 cd00609 AAT_like Aspartate ami 95.2 0.12 2.6E-06 33.9 6.5 40 32-71 40-81 (350)
134 TIGR01977 am_tr_V_EF2568 cyste 95.2 0.37 7.9E-06 32.5 8.9 60 9-68 13-81 (376)
135 PLN00145 tyrosine/nicotianamin 95.0 0.088 1.9E-06 36.8 5.7 66 3-69 55-137 (430)
136 PRK08134 O-acetylhomoserine am 95.0 0.19 4.2E-06 35.4 7.4 51 26-80 58-108 (433)
137 TIGR03392 FeS_syn_CsdA cystein 95.0 0.63 1.4E-05 31.8 9.8 77 5-81 25-112 (398)
138 TIGR03403 nifS_epsilon cystein 95.0 0.56 1.2E-05 31.9 9.4 62 8-69 11-80 (382)
139 PRK10534 L-threonine aldolase; 94.8 0.29 6.2E-06 32.6 7.5 69 3-79 8-77 (333)
140 TIGR01326 OAH_OAS_sulfhy OAH/O 94.8 0.22 4.7E-06 34.8 7.1 51 26-80 51-101 (418)
141 TIGR01325 O_suc_HS_sulf O-succ 94.7 0.17 3.7E-06 34.8 6.3 42 26-69 48-89 (380)
142 PRK09295 bifunctional cysteine 94.6 0.89 1.9E-05 31.3 9.6 62 7-68 34-104 (406)
143 PRK15407 lipopolysaccharide bi 94.5 0.4 8.6E-06 33.8 7.9 36 32-69 63-98 (438)
144 PLN02187 rooty/superroot1 94.5 0.14 3E-06 36.2 5.7 66 3-69 69-151 (462)
145 PRK01533 histidinol-phosphate 94.5 0.23 5E-06 33.9 6.5 58 9-69 44-101 (366)
146 PRK09105 putative aminotransfe 94.5 0.55 1.2E-05 32.1 8.3 58 9-69 58-115 (370)
147 COG0076 GadB Glutamate decarbo 94.5 0.27 5.9E-06 35.0 7.0 42 32-73 101-143 (460)
148 TIGR01365 serC_2 phosphoserine 94.3 0.1 2.3E-06 36.1 4.6 59 9-67 15-76 (374)
149 PRK03080 phosphoserine aminotr 94.3 0.2 4.2E-06 34.4 5.9 59 9-68 24-86 (378)
150 TIGR01366 serC_3 phosphoserine 94.3 0.15 3.3E-06 34.8 5.3 59 9-67 15-78 (361)
151 TIGR01979 sufS cysteine desulf 94.2 1 2.2E-05 30.8 9.3 64 6-69 28-100 (403)
152 PLN02955 8-amino-7-oxononanoat 94.2 0.4 8.6E-06 34.5 7.3 59 8-68 117-181 (476)
153 PRK07050 cystathionine beta-ly 94.1 0.35 7.6E-06 33.6 6.9 43 25-69 58-100 (394)
154 PLN02263 serine decarboxylase 94.1 0.54 1.2E-05 33.7 7.8 44 32-75 133-178 (470)
155 PRK02731 histidinol-phosphate 94.1 0.66 1.4E-05 31.3 8.0 57 9-68 47-103 (367)
156 PRK06108 aspartate aminotransf 94.0 0.99 2.2E-05 30.5 8.7 61 9-69 39-104 (382)
157 TIGR03301 PhnW-AepZ 2-aminoeth 93.9 0.41 8.8E-06 31.8 6.7 58 9-69 11-70 (355)
158 PRK00451 glycine dehydrogenase 93.9 0.62 1.4E-05 32.5 7.8 46 35-81 115-160 (447)
159 PRK03317 histidinol-phosphate 93.8 0.3 6.5E-06 33.1 6.1 62 8-69 40-108 (368)
160 PRK11658 UDP-4-amino-4-deoxy-L 93.8 0.62 1.3E-05 32.0 7.6 55 10-69 14-68 (379)
161 PLN03227 serine palmitoyltrans 93.7 1.1 2.4E-05 31.0 8.7 59 8-68 13-77 (392)
162 PRK05355 3-phosphoserine/phosp 93.7 0.27 5.9E-06 33.7 5.7 59 9-67 15-85 (360)
163 TIGR01976 am_tr_V_VC1184 cyste 93.7 0.77 1.7E-05 31.3 7.8 74 8-81 29-110 (397)
164 PRK14809 histidinol-phosphate 93.7 0.43 9.3E-06 32.2 6.5 58 9-69 45-102 (357)
165 PRK13034 serine hydroxymethylt 93.6 0.58 1.3E-05 32.7 7.2 61 7-69 39-110 (416)
166 PRK14807 histidinol-phosphate 93.6 0.9 2E-05 30.6 8.0 60 9-69 37-96 (351)
167 PLN02855 Bifunctional selenocy 93.5 1.6 3.4E-05 30.3 9.2 63 6-68 42-113 (424)
168 cd06450 DOPA_deC_like DOPA dec 93.3 0.45 9.8E-06 31.6 6.2 40 32-71 38-79 (345)
169 TIGR02379 ECA_wecE TDP-4-keto- 93.3 0.75 1.6E-05 31.7 7.3 56 10-69 11-66 (376)
170 PRK00950 histidinol-phosphate 93.2 1.1 2.3E-05 30.2 7.8 58 9-69 49-107 (361)
171 PRK06358 threonine-phosphate d 93.2 0.59 1.3E-05 31.7 6.6 57 9-68 34-90 (354)
172 cd00614 CGS_like CGS_like: Cys 93.1 0.59 1.3E-05 31.9 6.5 42 26-69 34-75 (369)
173 PRK07682 hypothetical protein; 92.9 1 2.2E-05 30.6 7.5 59 11-69 37-101 (378)
174 KOG0259|consensus 92.9 0.46 1E-05 33.5 5.8 65 3-67 64-144 (447)
175 COG0156 BioF 7-keto-8-aminopel 92.9 0.68 1.5E-05 32.5 6.6 58 8-67 54-117 (388)
176 PRK07812 O-acetylhomoserine am 92.8 0.82 1.8E-05 32.3 7.0 39 27-67 64-102 (436)
177 TIGR00474 selA seryl-tRNA(sec) 92.7 1.6 3.5E-05 31.1 8.4 62 4-67 87-155 (454)
178 PRK08248 O-acetylhomoserine am 92.6 0.9 1.9E-05 32.0 7.0 52 26-81 58-109 (431)
179 PRK02610 histidinol-phosphate 92.5 1.1 2.4E-05 30.5 7.3 59 9-67 43-109 (374)
180 PRK08861 cystathionine gamma-s 92.5 0.72 1.6E-05 32.1 6.4 42 26-69 47-88 (388)
181 PRK03967 histidinol-phosphate 92.5 1.1 2.5E-05 30.0 7.2 58 10-68 34-91 (337)
182 PRK08133 O-succinylhomoserine 92.4 0.74 1.6E-05 31.9 6.4 41 27-69 56-96 (390)
183 PRK14808 histidinol-phosphate 92.4 0.73 1.6E-05 31.1 6.2 60 9-69 34-96 (335)
184 PRK11706 TDP-4-oxo-6-deoxy-D-g 92.4 1.5 3.3E-05 30.0 7.8 53 12-69 13-66 (375)
185 TIGR01265 tyr_nico_aTase tyros 92.3 0.58 1.3E-05 32.2 5.8 60 10-70 51-117 (403)
186 PRK05387 histidinol-phosphate 92.2 0.58 1.3E-05 31.3 5.5 59 9-69 39-97 (353)
187 TIGR01364 serC_1 phosphoserine 92.2 1.3 2.9E-05 30.2 7.3 58 10-67 5-74 (349)
188 PRK06702 O-acetylhomoserine am 92.2 1.2 2.7E-05 31.5 7.3 38 29-68 58-95 (432)
189 TIGR01814 kynureninase kynuren 92.1 0.9 2E-05 31.3 6.5 65 4-69 35-106 (406)
190 PRK08056 threonine-phosphate d 92.1 0.84 1.8E-05 30.9 6.2 58 9-69 35-92 (356)
191 TIGR02326 transamin_PhnW 2-ami 91.9 0.54 1.2E-05 31.7 5.1 38 32-69 35-74 (363)
192 cd06451 AGAT_like Alanine-glyo 91.7 1 2.3E-05 30.1 6.3 47 32-80 32-79 (356)
193 COG0399 WecE Predicted pyridox 91.7 0.78 1.7E-05 32.0 5.8 35 32-68 34-68 (374)
194 PRK07908 hypothetical protein; 91.6 0.86 1.9E-05 30.6 5.9 56 9-67 37-93 (349)
195 TIGR02080 O_succ_thio_ly O-suc 91.4 1.1 2.3E-05 31.0 6.3 42 26-69 45-86 (382)
196 PRK04311 selenocysteine syntha 91.4 2.6 5.7E-05 30.2 8.3 58 9-68 99-161 (464)
197 PRK08153 histidinol-phosphate 91.4 0.77 1.7E-05 31.3 5.5 58 9-69 47-104 (369)
198 PLN02409 serine--glyoxylate am 91.1 0.7 1.5E-05 31.9 5.1 48 32-81 42-90 (401)
199 PLN03026 histidinol-phosphate 91.1 0.55 1.2E-05 32.2 4.5 57 9-69 67-123 (380)
200 PRK07392 threonine-phosphate d 90.9 1.3 2.7E-05 30.0 6.1 57 9-68 37-93 (360)
201 PRK06767 methionine gamma-lyas 90.8 1.6 3.5E-05 30.1 6.6 40 26-67 55-94 (386)
202 PRK07269 cystathionine gamma-s 90.5 1.1 2.4E-05 30.8 5.6 41 26-68 48-88 (364)
203 PLN02242 methionine gamma-lyas 90.5 1.7 3.7E-05 30.5 6.6 42 26-69 70-111 (418)
204 PRK06084 O-acetylhomoserine am 90.5 2 4.4E-05 30.2 7.0 43 26-70 52-94 (425)
205 PRK05994 O-acetylhomoserine am 90.5 1.3 2.8E-05 31.2 6.0 50 27-80 58-107 (427)
206 COG0520 csdA Selenocysteine ly 90.4 2.7 5.8E-05 29.5 7.5 75 6-80 32-116 (405)
207 PLN02452 phosphoserine transam 90.3 1.4 3E-05 30.5 6.0 59 9-67 19-89 (365)
208 PLN02880 tyrosine decarboxylas 90.2 1.5 3.3E-05 31.4 6.3 42 31-72 121-169 (490)
209 PRK00011 glyA serine hydroxyme 90.1 1.7 3.6E-05 30.0 6.3 61 8-69 37-107 (416)
210 PRK05166 histidinol-phosphate 90.1 2.4 5.3E-05 28.8 7.0 58 9-69 51-108 (371)
211 TIGR03588 PseC UDP-4-keto-6-de 90.0 3 6.5E-05 28.5 7.4 55 10-69 10-64 (380)
212 PTZ00094 serine hydroxymethylt 90.0 2.1 4.6E-05 30.1 6.8 33 37-69 85-120 (452)
213 PRK07503 methionine gamma-lyas 89.7 2.3 5E-05 29.6 6.7 41 26-68 59-99 (403)
214 TIGR01328 met_gam_lyase methio 89.5 2.3 5.1E-05 29.5 6.6 41 26-68 53-93 (391)
215 PLN02656 tyrosine transaminase 89.3 1.8 3.9E-05 29.9 6.0 61 9-69 50-116 (409)
216 TIGR01264 tyr_amTase_E tyrosin 89.3 1.5 3.3E-05 30.1 5.6 60 9-69 50-115 (401)
217 PRK05764 aspartate aminotransf 89.2 4.6 9.9E-05 27.5 7.8 61 9-69 46-111 (393)
218 PRK04870 histidinol-phosphate 89.2 2.7 5.9E-05 28.3 6.7 60 9-69 41-101 (356)
219 PRK12462 phosphoserine aminotr 89.1 2 4.4E-05 29.8 6.1 59 9-67 16-86 (364)
220 PF00282 Pyridoxal_deC: Pyrido 89.1 1.9 4.1E-05 29.8 5.9 41 32-72 79-126 (373)
221 TIGR01324 cysta_beta_ly_B cyst 88.7 2.7 5.8E-05 29.1 6.4 40 27-68 45-84 (377)
222 PRK13479 2-aminoethylphosphona 88.3 1.5 3.3E-05 29.5 5.0 38 32-69 37-76 (368)
223 PRK08363 alanine aminotransfer 88.2 6.5 0.00014 27.0 8.2 61 9-69 48-113 (398)
224 PRK08960 hypothetical protein; 88.2 6.4 0.00014 26.9 8.3 61 9-69 47-112 (387)
225 PRK07568 aspartate aminotransf 88.0 6.6 0.00014 26.8 8.2 60 10-69 46-108 (397)
226 PRK08361 aspartate aminotransf 87.9 4.8 0.0001 27.5 7.2 60 10-69 49-113 (391)
227 PRK09082 methionine aminotrans 87.8 5.4 0.00012 27.3 7.5 61 9-69 45-111 (386)
228 PLN02590 probable tyrosine dec 87.8 2.7 5.9E-05 30.7 6.2 41 32-72 170-217 (539)
229 PRK05968 hypothetical protein; 87.8 3.6 7.9E-05 28.5 6.6 51 26-80 57-107 (389)
230 TIGR03811 tyr_de_CO2_Ent tyros 87.8 1.7 3.7E-05 32.2 5.2 42 31-72 122-163 (608)
231 PRK07810 O-succinylhomoserine 87.6 4.8 0.0001 28.1 7.2 41 26-68 64-104 (403)
232 PRK12414 putative aminotransfe 87.6 7.1 0.00015 26.7 8.9 61 9-69 44-110 (384)
233 PRK06434 cystathionine gamma-l 87.5 3.5 7.6E-05 28.7 6.4 41 26-68 58-98 (384)
234 TIGR02539 SepCysS Sep-tRNA:Cys 86.8 6.3 0.00014 26.8 7.3 36 32-69 51-86 (370)
235 PRK01688 histidinol-phosphate 86.8 2 4.3E-05 29.1 4.8 42 28-69 53-94 (351)
236 PRK03321 putative aminotransfe 86.5 3.3 7.1E-05 27.8 5.8 55 10-67 38-92 (352)
237 PRK05613 O-acetylhomoserine am 86.4 6.5 0.00014 27.9 7.3 41 26-68 63-103 (437)
238 PRK09028 cystathionine beta-ly 86.3 4.2 9.1E-05 28.5 6.3 50 28-81 57-106 (394)
239 PRK07582 cystathionine gamma-l 86.3 4 8.6E-05 28.0 6.1 51 26-81 45-95 (366)
240 COG0075 Serine-pyruvate aminot 86.1 1.7 3.7E-05 30.5 4.3 57 9-67 17-74 (383)
241 PRK08247 cystathionine gamma-s 85.9 3.7 8.1E-05 28.1 5.8 50 26-80 46-95 (366)
242 PRK05939 hypothetical protein; 85.7 8 0.00017 27.0 7.5 52 26-81 41-92 (397)
243 PRK05957 aspartate aminotransf 85.7 9.2 0.0002 26.2 8.6 61 9-69 42-109 (389)
244 PRK07683 aminotransferase A; V 85.7 9.2 0.0002 26.2 8.6 61 9-69 43-109 (387)
245 PRK06107 aspartate aminotransf 85.3 7.2 0.00016 26.9 7.1 60 9-68 48-112 (402)
246 PLN00143 tyrosine/nicotianamin 85.3 3.6 7.8E-05 28.5 5.6 60 10-69 52-117 (409)
247 PRK08249 cystathionine gamma-s 85.2 5.8 0.00013 27.6 6.6 41 26-68 58-98 (398)
248 KOG2433|consensus 85.1 2.9 6.4E-05 29.9 5.0 61 9-72 435-498 (577)
249 cd00378 SHMT Serine-glycine hy 85.1 5.6 0.00012 27.1 6.4 62 7-69 30-101 (402)
250 PRK13355 bifunctional HTH-doma 85.0 3.9 8.5E-05 29.3 5.8 61 9-69 164-228 (517)
251 COG0079 HisC Histidinol-phosph 84.9 10 0.00022 26.2 7.6 59 10-71 38-97 (356)
252 PRK08574 cystathionine gamma-s 84.7 4.1 8.9E-05 28.2 5.7 41 26-68 47-87 (385)
253 cd00615 Orn_deC_like Ornithine 84.6 5.4 0.00012 26.3 6.0 39 29-69 56-95 (294)
254 PRK06234 methionine gamma-lyas 84.5 4.8 0.0001 28.0 5.9 40 26-67 58-97 (400)
255 PRK08045 cystathionine gamma-s 84.5 4.1 8.9E-05 28.3 5.6 41 26-68 46-86 (386)
256 PTZ00433 tyrosine aminotransfe 84.0 4.1 8.9E-05 28.2 5.4 59 10-69 53-124 (412)
257 PLN02483 serine palmitoyltrans 83.9 14 0.00029 26.6 9.2 61 6-68 114-180 (489)
258 PRK06176 cystathionine gamma-s 83.7 5.7 0.00012 27.5 6.0 40 26-67 44-83 (380)
259 PRK06207 aspartate aminotransf 83.3 11 0.00024 26.1 7.3 60 10-69 56-122 (405)
260 PRK07777 aminotransferase; Val 83.2 12 0.00026 25.5 8.6 58 10-67 40-103 (387)
261 PRK07811 cystathionine gamma-s 83.0 6.4 0.00014 27.2 6.0 41 27-69 56-96 (388)
262 PRK09265 aminotransferase AlaT 82.7 13 0.00028 25.6 8.1 61 9-69 51-115 (404)
263 PRK07504 O-succinylhomoserine 82.6 10 0.00023 26.3 7.0 41 26-68 59-99 (398)
264 PRK06425 histidinol-phosphate 82.3 4 8.6E-05 27.4 4.7 42 27-68 35-76 (332)
265 PRK07324 transaminase; Validat 82.1 8.8 0.00019 26.2 6.4 58 10-69 42-100 (373)
266 PRK08354 putative aminotransfe 81.7 13 0.00027 24.7 7.3 52 9-68 22-73 (311)
267 PRK13238 tnaA tryptophanase/L- 81.5 7.1 0.00015 27.9 5.9 53 12-68 59-112 (460)
268 TIGR03799 NOD_PanD_pyr putativ 81.5 4.7 0.0001 29.3 5.1 42 31-72 128-182 (522)
269 PRK08114 cystathionine beta-ly 81.5 9.7 0.00021 26.7 6.5 40 26-67 56-95 (395)
270 PRK04366 glycine dehydrogenase 80.7 18 0.00039 25.9 8.3 64 7-71 81-151 (481)
271 TIGR01329 cysta_beta_ly_E cyst 80.7 11 0.00024 26.0 6.5 38 28-67 43-80 (378)
272 PRK08776 cystathionine gamma-s 80.1 12 0.00026 26.2 6.6 42 26-69 54-95 (405)
273 KOG2862|consensus 79.9 4.2 9.1E-05 28.3 4.1 21 2-22 38-58 (385)
274 PF00155 Aminotran_1_2: Aminot 79.5 16 0.00034 24.4 7.6 68 3-70 11-89 (363)
275 PRK08912 hypothetical protein; 78.9 18 0.00038 24.7 7.4 60 9-68 41-106 (387)
276 cd00617 Tnase_like Tryptophana 78.7 13 0.00029 26.4 6.5 35 33-69 54-88 (431)
277 TIGR01140 L_thr_O3P_dcar L-thr 78.4 7.8 0.00017 25.9 5.1 40 29-68 44-83 (330)
278 TIGR03538 DapC_gpp succinyldia 78.0 19 0.00042 24.6 8.2 61 9-69 43-110 (393)
279 PRK04635 histidinol-phosphate 76.4 4.7 0.0001 27.2 3.7 36 34-69 62-97 (354)
280 PRK07049 methionine gamma-lyas 76.2 6.7 0.00014 27.6 4.4 41 26-68 77-117 (427)
281 PRK08068 transaminase; Reviewe 76.0 16 0.00035 24.9 6.2 60 8-68 46-113 (389)
282 PRK08064 cystathionine beta-ly 75.7 19 0.0004 25.0 6.5 39 27-67 49-87 (390)
283 PRK12566 glycine dehydrogenase 75.4 13 0.00028 29.4 6.0 46 33-80 544-596 (954)
284 PRK07590 L,L-diaminopimelate a 75.3 21 0.00046 24.6 6.7 58 9-66 49-116 (409)
285 PRK06836 aspartate aminotransf 75.2 24 0.00052 24.2 7.1 35 35-69 80-116 (394)
286 PRK04781 histidinol-phosphate 75.1 5.7 0.00012 27.0 3.8 36 34-69 61-96 (364)
287 PRK05839 hypothetical protein; 74.5 24 0.00053 24.0 8.2 60 9-68 39-102 (374)
288 PRK05967 cystathionine beta-ly 73.8 25 0.00054 24.7 6.7 51 26-80 58-108 (395)
289 PRK11524 putative methyltransf 73.8 8.2 0.00018 25.6 4.2 39 29-68 189-229 (284)
290 PRK07865 N-succinyldiaminopime 73.7 25 0.00054 23.8 8.7 61 9-69 42-106 (364)
291 PRK07550 hypothetical protein; 73.5 13 0.00028 25.4 5.2 60 10-69 45-110 (386)
292 TIGR03539 DapC_actino succinyl 73.0 26 0.00056 23.7 8.1 60 9-68 36-99 (357)
293 PRK07671 cystathionine beta-ly 72.8 13 0.00029 25.6 5.2 40 26-67 44-83 (377)
294 PRK07366 succinyldiaminopimela 72.3 21 0.00045 24.4 6.0 59 9-68 45-111 (388)
295 PRK05367 glycine dehydrogenase 71.8 23 0.00051 27.9 6.7 38 33-72 543-581 (954)
296 TIGR00273 iron-sulfur cluster- 71.5 13 0.00029 26.5 5.0 40 36-75 51-90 (432)
297 PLN02414 glycine dehydrogenase 70.9 39 0.00084 26.9 7.7 70 10-80 119-197 (993)
298 PRK09147 succinyldiaminopimela 70.3 32 0.00069 23.6 7.3 61 9-69 44-110 (396)
299 TIGR03542 DAPAT_plant LL-diami 69.9 14 0.0003 25.5 4.8 57 10-66 49-112 (402)
300 PRK10886 DnaA initiator-associ 69.4 26 0.00056 22.2 5.7 43 37-81 99-142 (196)
301 PLN00175 aminotransferase fami 69.3 36 0.00077 23.7 8.8 60 9-68 69-134 (413)
302 PRK06460 hypothetical protein; 68.4 28 0.0006 24.0 6.0 40 27-68 40-79 (376)
303 PRK07309 aromatic amino acid a 67.9 36 0.00079 23.3 8.6 61 9-69 45-111 (391)
304 PRK07337 aminotransferase; Val 67.4 37 0.00079 23.2 8.0 60 9-68 45-109 (388)
305 TIGR03537 DapC succinyldiamino 67.2 35 0.00077 22.9 7.5 60 9-68 15-79 (350)
306 PRK06855 aminotransferase; Val 67.1 20 0.00043 25.1 5.1 58 10-67 51-114 (433)
307 COG0436 Aspartate/tyrosine/aro 67.0 16 0.00034 25.6 4.6 60 9-68 43-108 (393)
308 PLN02724 Molybdenum cofactor s 66.7 54 0.0012 25.2 7.6 37 31-67 77-115 (805)
309 PRK07718 fliL flagellar basal 66.4 13 0.00028 22.3 3.7 50 7-56 84-138 (142)
310 PF15144 DUF4576: Domain of un 66.4 10 0.00022 20.8 2.8 28 55-82 51-79 (88)
311 COG1139 Uncharacterized conser 66.0 20 0.00042 25.9 4.9 28 50-77 79-106 (459)
312 COG1062 AdhC Zn-dependent alco 65.6 37 0.00081 23.9 6.0 44 36-80 242-285 (366)
313 PF05165 GGDN: GGDN family; I 63.2 42 0.00091 22.4 7.7 81 1-81 12-119 (246)
314 PF15005 IZUMO: Izumo sperm-eg 62.9 23 0.00049 22.0 4.2 38 7-45 8-45 (160)
315 PLN02414 glycine dehydrogenase 62.8 31 0.00067 27.4 5.8 39 32-72 568-610 (993)
316 PRK09276 LL-diaminopimelate am 62.7 41 0.00088 22.9 5.9 60 9-69 46-113 (385)
317 PF01555 N6_N4_Mtase: DNA meth 62.2 6.7 0.00015 24.2 1.9 39 29-68 172-212 (231)
318 COG2130 Putative NADP-dependen 62.1 12 0.00026 25.9 3.2 35 36-71 207-241 (340)
319 PRK12785 fliL flagellar basal 62.0 18 0.00039 22.3 3.7 48 9-56 110-162 (166)
320 KOG1359|consensus 61.6 39 0.00084 23.6 5.5 62 4-67 77-145 (417)
321 PRK13237 tyrosine phenol-lyase 61.1 20 0.00042 26.0 4.2 34 32-67 78-111 (460)
322 PTZ00377 alanine aminotransfer 60.8 58 0.0013 23.2 7.2 59 11-69 92-158 (481)
323 KOG1360|consensus 60.8 31 0.00068 25.1 5.1 67 5-73 182-256 (570)
324 TIGR00461 gcvP glycine dehydro 59.2 31 0.00067 27.3 5.2 39 32-72 530-569 (939)
325 PLN02231 alanine transaminase 57.1 75 0.0016 23.3 8.1 37 34-70 174-212 (534)
326 cd01527 RHOD_YgaP Member of th 57.0 30 0.00064 18.6 4.5 27 45-71 51-77 (99)
327 PF01904 DUF72: Protein of unk 56.8 22 0.00048 22.9 3.7 40 32-71 188-229 (230)
328 PRK08455 fliL flagellar basal 56.6 22 0.00048 22.3 3.5 49 8-56 125-178 (182)
329 PLN02509 cystathionine beta-ly 56.3 74 0.0016 23.0 6.7 36 30-67 131-166 (464)
330 TIGR02981 phageshock_pspE phag 56.0 35 0.00075 19.1 5.8 38 34-71 43-81 (101)
331 PRK05367 glycine dehydrogenase 55.9 33 0.00071 27.1 4.9 46 34-80 123-170 (954)
332 PLN02672 methionine S-methyltr 55.8 1.1E+02 0.0024 24.8 7.8 58 9-67 712-772 (1082)
333 TIGR02618 tyr_phenol_ly tyrosi 55.7 27 0.00059 25.2 4.2 32 32-65 71-102 (450)
334 PLN02160 thiosulfate sulfurtra 55.2 42 0.0009 19.8 5.8 41 40-82 73-113 (136)
335 PF07499 RuvA_C: RuvA, C-termi 54.9 9.2 0.0002 18.5 1.3 19 3-21 11-29 (47)
336 PF01851 PC_rep: Proteasome/cy 54.8 17 0.00037 16.4 2.2 20 3-22 9-28 (35)
337 PF03748 FliL: Flagellar basal 54.7 27 0.00058 19.0 3.4 49 8-56 42-95 (99)
338 PLN02994 1-aminocyclopropane-1 53.7 49 0.0011 20.1 6.5 38 31-68 95-136 (153)
339 PRK06959 putative threonine-ph 53.4 40 0.00087 22.7 4.6 33 35-67 56-89 (339)
340 PRK10302 hypothetical protein; 52.1 56 0.0012 21.9 5.0 42 32-73 211-253 (272)
341 PF01053 Cys_Met_Meta_PP: Cys/ 51.4 48 0.001 23.3 4.8 53 25-81 48-100 (386)
342 PRK15481 transcriptional regul 51.1 81 0.0018 21.9 7.1 20 50-69 142-161 (431)
343 TIGR03540 DapC_direct LL-diami 50.8 77 0.0017 21.5 6.4 60 9-69 44-111 (383)
344 PF00107 ADH_zinc_N: Zinc-bind 50.2 22 0.00047 20.0 2.6 36 37-72 46-82 (130)
345 KOG1368|consensus 49.8 71 0.0015 22.4 5.2 40 32-73 56-95 (384)
346 PRK09148 aminotransferase; Val 49.7 65 0.0014 22.3 5.3 59 10-69 46-112 (405)
347 COG1168 MalY Bifunctional PLP- 49.6 94 0.002 22.2 7.2 60 9-68 40-102 (388)
348 PRK00162 glpE thiosulfate sulf 49.1 45 0.00097 18.3 5.0 46 35-83 46-91 (108)
349 COG4981 Enoyl reductase domain 48.8 70 0.0015 24.2 5.4 46 37-82 139-184 (717)
350 PF07704 PSK_trans_fac: Rv0623 48.8 44 0.00095 18.1 3.6 28 31-67 7-34 (82)
351 PRK05696 fliL flagellar basal 47.4 49 0.0011 20.4 4.0 49 8-56 109-166 (170)
352 PLN03226 serine hydroxymethylt 46.5 1.1E+02 0.0023 22.2 6.0 28 41-68 89-119 (475)
353 PRK09257 aromatic amino acid a 45.0 1E+02 0.0022 21.2 7.3 61 10-70 47-115 (396)
354 TIGR03531 selenium_SpcS O-phos 44.0 1E+02 0.0022 22.2 5.5 38 35-72 108-147 (444)
355 cd01522 RHOD_1 Member of the R 43.4 61 0.0013 18.3 5.1 43 37-81 53-95 (117)
356 PF04232 SpoVS: Stage V sporul 43.2 60 0.0013 18.1 4.1 36 36-72 14-52 (86)
357 PRK09440 avtA valine--pyruvate 42.8 79 0.0017 21.8 4.8 37 33-69 79-117 (416)
358 cd01528 RHOD_2 Member of the R 42.3 57 0.0012 17.6 5.4 33 49-83 59-91 (101)
359 PRK05664 threonine-phosphate d 42.2 83 0.0018 21.0 4.8 30 35-66 52-81 (330)
360 PRK07021 fliL flagellar basal 41.8 54 0.0012 20.0 3.6 48 9-56 102-158 (162)
361 PHA02955 hypothetical protein; 41.7 32 0.00068 22.4 2.5 29 50-78 136-165 (213)
362 TIGR02391 hypoth_ymh conserved 41.7 75 0.0016 18.8 4.1 50 9-66 2-51 (125)
363 PRK07681 aspartate aminotransf 41.7 1.1E+02 0.0025 20.9 7.3 61 9-69 47-113 (399)
364 cd01525 RHOD_Kc Member of the 41.2 60 0.0013 17.5 3.6 32 50-83 67-98 (105)
365 cd01447 Polysulfide_ST Polysul 41.2 35 0.00076 18.3 2.5 33 49-83 62-94 (103)
366 KOG1196|consensus 40.9 60 0.0013 22.6 3.8 36 36-72 211-246 (343)
367 KOG0174|consensus 40.8 36 0.00077 22.1 2.6 23 49-71 57-80 (224)
368 COG2861 Uncharacterized protei 40.6 70 0.0015 21.4 4.0 64 5-72 101-172 (250)
369 COG2994 HlyC ACP:hemolysin acy 40.4 19 0.0004 22.1 1.3 16 1-16 104-119 (148)
370 cd01444 GlpE_ST GlpE sulfurtra 39.8 60 0.0013 17.1 5.0 44 36-82 45-88 (96)
371 PRK05697 flagellar basal body- 39.6 65 0.0014 19.3 3.6 48 9-56 77-133 (137)
372 COG1003 GcvP Glycine cleavage 39.2 1E+02 0.0022 22.6 4.9 40 32-73 109-149 (496)
373 COG0116 Predicted N6-adenine-s 39.0 17 0.00036 25.7 1.0 42 33-74 175-219 (381)
374 PRK06654 fliL flagellar basal 38.7 97 0.0021 19.7 4.3 48 8-56 125-175 (181)
375 cd01479 Sec24-like Sec24-like: 38.3 1.1E+02 0.0024 19.8 4.9 25 55-81 114-138 (244)
376 TIGR00696 wecB_tagA_cpsF bacte 38.3 1E+02 0.0022 19.2 5.0 17 51-67 50-66 (177)
377 COG1922 WecG Teichoic acid bio 37.8 1.2E+02 0.0027 20.2 5.9 42 35-76 94-136 (253)
378 PRK13699 putative methylase; P 37.6 43 0.00093 21.6 2.7 36 29-64 144-181 (227)
379 COG4423 Uncharacterized protei 37.4 75 0.0016 17.5 4.1 30 32-70 8-39 (81)
380 cd01202 FRS2 Fibroblast growth 36.9 15 0.00033 21.1 0.5 32 51-82 31-62 (102)
381 PF13880 Acetyltransf_13: ESCO 36.4 22 0.00047 19.0 1.0 28 50-81 43-70 (70)
382 PF06883 RNA_pol_Rpa2_4: RNA p 36.3 50 0.0011 16.9 2.4 19 5-23 1-19 (58)
383 cd01524 RHOD_Pyr_redox Member 35.9 71 0.0015 16.8 5.5 45 35-83 39-83 (90)
384 cd01533 4RHOD_Repeat_2 Member 35.8 79 0.0017 17.4 5.3 36 34-69 51-87 (109)
385 PRK06348 aspartate aminotransf 35.8 1.4E+02 0.0031 20.3 8.4 36 34-69 72-109 (384)
386 KOG0053|consensus 35.8 1.5E+02 0.0033 21.3 5.3 51 27-81 72-122 (409)
387 PF06406 StbA: StbA protein; 35.1 1.2E+02 0.0027 20.4 4.8 25 48-72 272-296 (318)
388 cd01519 RHOD_HSP67B2 Member of 35.0 78 0.0017 17.0 5.2 32 49-82 67-98 (106)
389 KOG2040|consensus 34.6 40 0.00088 26.1 2.5 40 32-73 582-622 (1001)
390 PRK13938 phosphoheptose isomer 34.6 1.2E+02 0.0026 19.2 5.4 30 51-82 117-147 (196)
391 KOG3550|consensus 34.4 7.9 0.00017 24.1 -1.0 14 3-16 84-97 (207)
392 smart00542 FYRC "FY-rich" doma 34.2 31 0.00067 18.9 1.5 16 3-18 51-66 (86)
393 COG1817 Uncharacterized protei 34.0 1.5E+02 0.0033 20.8 4.9 62 5-67 198-270 (346)
394 PLN02605 monogalactosyldiacylg 33.8 41 0.00088 23.0 2.3 21 2-22 5-25 (382)
395 PRK14729 miaA tRNA delta(2)-is 33.6 56 0.0012 22.3 2.9 28 52-82 8-35 (300)
396 cd01534 4RHOD_Repeat_3 Member 33.3 82 0.0018 16.8 4.8 45 36-83 43-88 (95)
397 COG4231 Indolepyruvate ferredo 32.8 2.1E+02 0.0046 21.9 5.8 56 27-83 35-90 (640)
398 COG0054 RibH Riboflavin syntha 32.6 54 0.0012 20.2 2.4 18 55-72 133-150 (152)
399 PLN02376 1-aminocyclopropane-1 32.6 1.3E+02 0.0027 21.8 4.7 37 33-69 99-139 (496)
400 PF03028 Dynein_heavy: Dynein 32.6 1.6E+02 0.0035 22.2 5.4 68 12-81 82-152 (707)
401 cd00158 RHOD Rhodanese Homolog 32.2 76 0.0017 16.1 4.4 34 47-82 49-82 (89)
402 cd01523 RHOD_Lact_B Member of 31.9 89 0.0019 16.8 3.7 29 43-71 56-84 (100)
403 PF11534 HTHP: Hexameric tyros 31.2 68 0.0015 17.3 2.4 20 53-72 9-28 (75)
404 PF02110 HK: Hydroxyethylthiaz 31.1 1.6E+02 0.0035 19.5 7.0 79 2-80 54-165 (246)
405 PF01276 OKR_DC_1: Orn/Lys/Arg 31.1 1.9E+02 0.004 20.8 5.2 43 31-75 65-107 (417)
406 PRK13608 diacylglycerol glucos 31.1 41 0.0009 23.1 2.0 21 2-22 12-32 (391)
407 cd01468 trunk_domain trunk dom 31.0 1.4E+02 0.0031 19.1 4.4 21 59-81 119-141 (239)
408 PF04811 Sec23_trunk: Sec23/Se 30.9 1.5E+02 0.0032 19.0 4.9 49 32-81 93-141 (243)
409 COG0133 TrpB Tryptophan syntha 30.7 2E+02 0.0043 20.4 6.9 45 35-82 59-110 (396)
410 COG0324 MiaA tRNA delta(2)-iso 30.4 70 0.0015 22.0 2.9 30 51-82 6-35 (308)
411 PRK11783 rlmL 23S rRNA m(2)G24 30.2 40 0.00087 25.5 1.9 41 34-74 174-218 (702)
412 PF13302 Acetyltransf_3: Acety 29.9 1E+02 0.0023 17.1 3.3 24 57-80 100-123 (142)
413 PF01918 Alba: Alba; InterPro 29.9 64 0.0014 16.5 2.2 40 33-73 10-53 (70)
414 COG0114 FumC Fumarase [Energy 29.9 42 0.00092 24.2 1.9 17 51-67 91-107 (462)
415 PF08859 DGC: DGC domain; Int 29.8 73 0.0016 18.2 2.6 8 76-83 52-59 (110)
416 PF01745 IPT: Isopentenyl tran 29.7 65 0.0014 21.3 2.6 30 51-82 4-33 (233)
417 PRK06290 aspartate aminotransf 29.3 2E+02 0.0044 20.0 7.4 60 9-68 59-125 (410)
418 COG1580 FliL Flagellar basal b 28.7 73 0.0016 19.7 2.6 50 7-56 100-155 (159)
419 cd01535 4RHOD_Repeat_4 Member 28.2 1.4E+02 0.003 17.8 5.9 46 34-82 36-81 (145)
420 cd06533 Glyco_transf_WecG_TagA 27.8 1.5E+02 0.0032 18.1 5.2 39 36-74 33-72 (171)
421 PHA02662 ORF131 putative membr 27.8 63 0.0014 21.2 2.3 20 50-69 145-164 (226)
422 PLN02740 Alcohol dehydrogenase 27.7 1.8E+02 0.0039 19.8 4.7 39 37-75 257-295 (381)
423 PF14705 Costars: Costars; PDB 27.7 41 0.00089 18.3 1.2 24 56-83 38-61 (77)
424 cd01449 TST_Repeat_2 Thiosulfa 27.6 1.2E+02 0.0025 16.7 6.1 46 36-83 65-111 (118)
425 PRK12566 glycine dehydrogenase 27.5 1.5E+02 0.0032 23.8 4.5 46 34-80 126-173 (954)
426 cd03139 GATase1_PfpI_2 Type 1 27.4 1.4E+02 0.0031 17.8 4.4 26 50-75 145-170 (183)
427 PF02056 Glyco_hydro_4: Family 26.6 1.7E+02 0.0038 18.4 5.7 46 32-82 122-167 (183)
428 PRK15418 transcriptional regul 26.1 1.7E+02 0.0036 20.0 4.2 51 5-57 39-91 (318)
429 TIGR01741 staph_tand_hypo cons 26.0 58 0.0012 20.2 1.8 23 32-54 9-31 (157)
430 COG3844 Kynureninase [Amino ac 26.0 2.5E+02 0.0054 20.1 7.5 49 33-82 77-126 (407)
431 cd01531 Acr2p Eukaryotic arsen 26.0 1.2E+02 0.0027 16.7 3.1 33 51-83 65-104 (113)
432 PRK10151 ribosomal-protein-L7/ 25.7 1.1E+02 0.0024 18.2 3.1 23 57-79 109-131 (179)
433 TIGR00461 gcvP glycine dehydro 25.7 1.8E+02 0.0038 23.3 4.6 48 34-81 111-159 (939)
434 cd01526 RHOD_ThiF Member of th 25.7 1.4E+02 0.0029 16.9 3.8 32 49-82 73-105 (122)
435 PF01320 Colicin_Pyocin: Colic 25.4 19 0.00042 20.0 -0.3 42 32-73 31-75 (85)
436 cd01518 RHOD_YceA Member of th 25.4 1.2E+02 0.0026 16.3 4.0 33 49-83 62-94 (101)
437 KOG0022|consensus 25.4 1.9E+02 0.0042 20.4 4.3 45 36-80 250-294 (375)
438 PF12390 Se-cys_synth_N: Selen 25.2 81 0.0018 14.5 1.9 15 7-21 23-37 (40)
439 PF12060 DUF3541: Domain of un 25.1 2E+02 0.0044 18.9 4.2 41 7-47 145-187 (227)
440 PF01170 UPF0020: Putative RNA 24.9 46 0.001 20.5 1.3 40 33-72 12-54 (179)
441 cd03072 PDI_b'_ERp44 PDIb' fam 24.8 1.4E+02 0.0031 16.8 3.5 30 52-81 22-55 (111)
442 TIGR02157 PA_CoA_Oxy2 phenylac 24.8 74 0.0016 17.9 1.9 17 61-77 26-43 (90)
443 PF02347 GDC-P: Glycine cleava 24.7 1.5E+02 0.0032 21.5 3.8 44 34-80 112-159 (429)
444 PF02875 Mur_ligase_C: Mur lig 24.6 1.2E+02 0.0027 16.1 2.9 24 58-81 23-47 (91)
445 PRK08636 aspartate aminotransf 24.5 2.4E+02 0.0053 19.4 7.0 36 33-68 76-114 (403)
446 COG2118 DNA-binding protein [G 24.5 1.2E+02 0.0026 17.9 2.8 21 7-27 63-83 (116)
447 KOG3802|consensus 24.0 2E+02 0.0043 20.7 4.3 23 32-56 322-344 (398)
448 COG1670 RimL Acetyltransferase 24.0 1.2E+02 0.0025 17.6 2.9 23 57-79 112-134 (187)
449 PF09268 Clathrin-link: Clathr 24.0 75 0.0016 13.3 1.6 7 63-69 16-22 (24)
450 KOG1383|consensus 24.0 3E+02 0.0066 20.3 5.3 64 9-72 93-161 (491)
451 KOG1395|consensus 23.9 92 0.002 22.4 2.6 49 33-82 123-178 (477)
452 COG5074 t-SNARE complex subuni 23.7 66 0.0014 21.5 1.8 24 57-81 231-254 (280)
453 PLN02827 Alcohol dehydrogenase 23.5 2.5E+02 0.0055 19.2 5.1 38 37-75 252-290 (378)
454 PRK08762 molybdopterin biosynt 23.0 2.7E+02 0.0058 19.3 5.2 46 35-82 43-89 (376)
455 smart00450 RHOD Rhodanese Homo 22.8 1.2E+02 0.0027 15.4 4.3 33 48-82 56-88 (100)
456 TIGR00646 MG010 DNA primase-re 22.8 2E+02 0.0044 18.8 3.9 6 50-55 155-160 (218)
457 PF02985 HEAT: HEAT repeat; I 22.8 81 0.0018 13.3 2.0 19 5-23 9-27 (31)
458 PHA02947 S-S bond formation pa 22.6 1.1E+02 0.0023 20.1 2.6 20 51-70 137-156 (215)
459 cd08277 liver_alcohol_DH_like 22.6 2.5E+02 0.0055 18.9 4.7 38 38-75 244-281 (365)
460 PF04634 DUF600: Protein of un 22.6 75 0.0016 19.1 1.8 22 33-54 4-25 (147)
461 COG1801 Uncharacterized conser 21.9 2.6E+02 0.0055 18.7 4.6 44 29-72 201-246 (263)
462 cd01521 RHOD_PspE2 Member of t 21.9 1.6E+02 0.0034 16.2 5.1 35 45-82 61-97 (110)
463 cd00411 Asparaginase Asparagin 21.9 2.7E+02 0.0059 19.0 6.4 51 31-82 88-150 (323)
464 PLN02607 1-aminocyclopropane-1 21.8 2E+02 0.0043 20.4 4.1 36 33-68 100-139 (447)
465 TIGR02810 agaZ_gatZ D-tagatose 21.8 3.2E+02 0.007 19.8 7.8 70 3-72 16-112 (420)
466 PF04881 Adeno_GP19K: Adenovir 21.8 1E+02 0.0023 18.6 2.3 24 59-82 75-102 (139)
467 PF00885 DMRL_synthase: 6,7-di 21.8 93 0.002 18.8 2.1 17 56-72 125-141 (144)
468 PRK07878 molybdopterin biosynt 21.7 2.9E+02 0.0063 19.3 4.8 37 45-83 340-376 (392)
469 PRK15399 lysine decarboxylase 21.6 3.4E+02 0.0073 21.1 5.3 41 33-75 196-236 (713)
470 PRK00414 gmhA phosphoheptose i 21.4 2.2E+02 0.0048 17.8 5.3 29 51-81 115-144 (192)
471 PRK15400 lysine decarboxylase 21.2 3.6E+02 0.0077 21.0 5.4 37 33-71 196-232 (714)
472 COG4015 Predicted dinucleotide 21.0 2.3E+02 0.0049 18.1 3.7 34 50-83 19-53 (217)
473 COG0329 DapA Dihydrodipicolina 20.9 2.4E+02 0.0052 19.0 4.1 40 31-73 56-96 (299)
474 COG0279 GmhA Phosphoheptose is 20.9 1.5E+02 0.0032 18.8 2.9 31 31-62 24-55 (176)
475 PRK13781 paaB phenylacetate-Co 20.9 97 0.0021 17.6 1.9 16 62-77 32-48 (95)
476 PF05965 FYRC: F/Y rich C-term 20.5 46 0.00099 17.9 0.5 13 4-16 56-68 (86)
477 PF11195 DUF2829: Protein of u 20.4 64 0.0014 17.2 1.1 9 59-68 4-12 (75)
478 PF12471 GTP_CH_N: GTP cyclohy 20.3 1.3E+02 0.0029 19.3 2.6 20 51-70 46-65 (194)
479 cd03137 GATase1_AraC_1 AraC tr 20.1 1.5E+02 0.0032 17.9 2.8 26 50-75 149-174 (187)
480 PF00710 Asparaginase: Asparag 20.0 2.9E+02 0.0064 18.7 6.3 53 31-83 82-144 (313)
No 1
>COG4992 ArgD Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism]
Probab=99.96 E-value=1.8e-28 Score=166.25 Aligned_cols=82 Identities=39% Similarity=0.546 Sum_probs=77.5
Q ss_pred CccCCCCCCHHHHHHHHHHHHhh-ccCCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhhcC---CC
Q psy6206 1 MSLPVGHCHPAVVKAACTQLALL-NTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVHTN---ND 76 (83)
Q Consensus 1 ~~~~lGh~~p~i~~a~~~~~~~~-~~~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~~~---r~ 76 (83)
+++++||+||.|++++.+|++++ +.++.|.+++..+|+++|++.+| ..++|||+|||+||||+|||+||+|++ |.
T Consensus 52 av~~lGH~hP~iv~al~~Q~~kl~h~sn~~~~~~~~~la~~L~~~s~-~~d~vff~NSGaEA~EaAiKlARk~~~~~~k~ 130 (404)
T COG4992 52 AVNNLGHCHPALVEALKEQAEKLWHVSNLFYNEPQAELAEKLVELSP-FADRVFFCNSGAEANEAALKLARKYTGDPEKS 130 (404)
T ss_pred eeeccCCCCHHHHHHHHHHHHHhhhcccccCChHHHHHHHHHHhhCc-cccEEEEcCCcHHHHHHHHHHHHHHcCCCCCc
Confidence 47899999999999999999999 66788999999999999999999 789999999999999999999999998 88
Q ss_pred ceEEecC
Q psy6206 77 DVITQDQ 83 (83)
Q Consensus 77 ~ii~~~~ 83 (83)
+||+|+|
T Consensus 131 ~Iia~~n 137 (404)
T COG4992 131 KIIAFEN 137 (404)
T ss_pred EEEEEcC
Confidence 9999986
No 2
>COG0160 GabT 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism]
Probab=99.93 E-value=6.4e-26 Score=156.31 Aligned_cols=83 Identities=42% Similarity=0.522 Sum_probs=75.5
Q ss_pred CccCCCCCCHHHHHHHHHHHHhh-ccCCCC-cchHHHHHHHHHHhhCCC-CCCeEEeeCChHHHHHHHHHHHHhhcCCCc
Q psy6206 1 MSLPVGHCHPAVVKAACTQLALL-NTNNRF-LHDNLVLCARKLASLLPD-PLSVCFFVNSGSEANDLALRLARVHTNNDD 77 (83)
Q Consensus 1 ~~~~lGh~~p~i~~a~~~~~~~~-~~~~~~-~~~~~~~la~~l~~~~p~-~~~~v~f~~sGseA~e~Alk~ar~~~~r~~ 77 (83)
++.++||+||+|++|+.+|++++ |+...+ ++++..+++++|.+.+|. +.+++||++|||||||+|||+||.+|||..
T Consensus 66 ~v~~~GH~hP~Vv~Av~~q~~~~~h~~~~~~~~e~~v~~ae~L~~~~p~~~~~~~~f~~sGaeA~E~AiKiAr~~Tgr~~ 145 (447)
T COG0160 66 AVLNLGHNHPRVVEAVKRQLAKLNHTHTRDLYYEPYVELAEKLTALAPGSGLKKVFFGNSGAEAVEAAIKIARAYTGRPG 145 (447)
T ss_pred chhccCCCCHHHHHHHHHHHHHhhcccCCcccchhHHHHHHHHHHhCCcccCCeEEecCCcHHHHHHHHHHHHHHhCCCc
Confidence 46899999999999999999998 555444 449999999999999997 689999999999999999999999999999
Q ss_pred eEEecC
Q psy6206 78 VITQDQ 83 (83)
Q Consensus 78 ii~~~~ 83 (83)
||+|+|
T Consensus 146 viaf~~ 151 (447)
T COG0160 146 VIAFDG 151 (447)
T ss_pred EEEECC
Confidence 999986
No 3
>KOG1404|consensus
Probab=99.93 E-value=6e-26 Score=153.12 Aligned_cols=83 Identities=48% Similarity=0.729 Sum_probs=78.7
Q ss_pred CccCCCCCCHHHHHHHHHHHHhh-ccCCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhhcCCCceE
Q psy6206 1 MSLPVGHCHPAVVKAACTQLALL-NTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVHTNNDDVI 79 (83)
Q Consensus 1 ~~~~lGh~~p~i~~a~~~~~~~~-~~~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~~~r~~ii 79 (83)
|++++||+||+|++++.+|+.++ |..+.+.+++..+||+.|.+.+|++++.+||+||||||||.||||||.||++.+||
T Consensus 60 ~tvslGHchP~v~~a~~kQl~~l~H~t~~~~~~pi~~~Ae~L~s~~P~~l~~vfF~nsGsEANelal~mar~Yt~~~diI 139 (442)
T KOG1404|consen 60 VTVSLGHCHPDVVAAAVKQLKKLYHTTSGYLNPPIHDLAEALVSKLPGDLKVVFFVNSGSEANELALKMARLYTGNLDII 139 (442)
T ss_pred EEEEcCCCChHHHHHHHHhhhhhEEeeccccCCcHHHHHHHHHHhCCCCceEEEEecCCchHHHHHHHHHHHhcCCceEE
Confidence 57899999999999999999888 66678899999999999999999999999999999999999999999999999999
Q ss_pred EecC
Q psy6206 80 TQDQ 83 (83)
Q Consensus 80 ~~~~ 83 (83)
++++
T Consensus 140 a~r~ 143 (442)
T KOG1404|consen 140 ARRN 143 (442)
T ss_pred Eeec
Confidence 9975
No 4
>PRK06062 hypothetical protein; Provisional
Probab=99.93 E-value=1.6e-25 Score=154.98 Aligned_cols=83 Identities=36% Similarity=0.504 Sum_probs=76.2
Q ss_pred CccCCCCCCHHHHHHHHHHHHhh-ccCCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhhcCCCceE
Q psy6206 1 MSLPVGHCHPAVVKAACTQLALL-NTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVHTNNDDVI 79 (83)
Q Consensus 1 ~~~~lGh~~p~i~~a~~~~~~~~-~~~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~~~r~~ii 79 (83)
|++++||+||+|++|+.+|++++ +....+.+++..+|+++|++++|.++++|+|++|||||||.|||+||.|+||++||
T Consensus 63 ~~~~lGh~~p~v~~Ai~~q~~~~~~~~~~~~~~~~~~lae~L~~~~p~~~~~v~f~~SGsEAve~AlklAr~~tgr~~ii 142 (451)
T PRK06062 63 VNTNIGHQHPKVVAAIQEQAARLCTVAPAHANDARSEAARLIAERAPGDLSKVFFTNGGADANEHAVRMARLHTGRPKVL 142 (451)
T ss_pred HhhcCCCCCHHHHHHHHHHHHhcCCcCCccCCHHHHHHHHHHHHhCCCCCCEEEEcCChHHHHHHHHHHHHHhhCCceEE
Confidence 57899999999999999999998 33446778999999999999999878999999999999999999999999999999
Q ss_pred EecC
Q psy6206 80 TQDQ 83 (83)
Q Consensus 80 ~~~~ 83 (83)
+|+|
T Consensus 143 ~~~~ 146 (451)
T PRK06062 143 SAYR 146 (451)
T ss_pred EEeC
Confidence 9975
No 5
>COG0161 BioA Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Coenzyme metabolism]
Probab=99.92 E-value=2.7e-25 Score=152.93 Aligned_cols=83 Identities=33% Similarity=0.434 Sum_probs=74.7
Q ss_pred CccCCCCCCHHHHHHHHHHHHhh-cc-CCCCcchHHHHHHHHHHhhCC-CCCCeEEeeCChHHHHHHHHHHHHhhc----
Q psy6206 1 MSLPVGHCHPAVVKAACTQLALL-NT-NNRFLHDNLVLCARKLASLLP-DPLSVCFFVNSGSEANDLALRLARVHT---- 73 (83)
Q Consensus 1 ~~~~lGh~~p~i~~a~~~~~~~~-~~-~~~~~~~~~~~la~~l~~~~p-~~~~~v~f~~sGseA~e~Alk~ar~~~---- 73 (83)
||+++||+||+|.+|+.+|++++ +. ...+.++|..+|+++|.+++| +++++|||++|||||||.|||||++|+
T Consensus 54 W~~~~Gh~~~~i~~Ai~~Q~~~l~~~~~~~~t~~Pa~~LA~~L~~~aP~~~l~~vFf~~sGSeAvEtAlKma~qY~~~~G 133 (449)
T COG0161 54 WCVNHGHGRPEIAEAIKKQLDKLPHVMFGGFTHEPAIELAEKLAELAPEGGLDHVFFTDSGSEAVETALKMALQYWRARG 133 (449)
T ss_pred HHhhcCcCCHHHHHHHHHHHHhCCchhhcccCCchHHHHHHHHHHhCCCCCccEEEEeCCchHHHHHHHHHHHHHHHhcC
Confidence 89999999999999999999999 43 456778889999999999999 559999999999999999999999995
Q ss_pred --CCCceEEecC
Q psy6206 74 --NNDDVITQDQ 83 (83)
Q Consensus 74 --~r~~ii~~~~ 83 (83)
+|++||++++
T Consensus 134 ~p~r~~~Isr~~ 145 (449)
T COG0161 134 QPQRKKFISRRN 145 (449)
T ss_pred CCcceEEEEecc
Confidence 4677999864
No 6
>PRK06918 4-aminobutyrate aminotransferase; Reviewed
Probab=99.92 E-value=1.8e-24 Score=149.57 Aligned_cols=83 Identities=33% Similarity=0.474 Sum_probs=74.3
Q ss_pred CccCCCCCCHHHHHHHHHHHHhhc-cC-CCCcchHHHHHHHHHHhhCCCCC-CeEEeeCChHHHHHHHHHHHHhhcCCCc
Q psy6206 1 MSLPVGHCHPAVVKAACTQLALLN-TN-NRFLHDNLVLCARKLASLLPDPL-SVCFFVNSGSEANDLALRLARVHTNNDD 77 (83)
Q Consensus 1 ~~~~lGh~~p~i~~a~~~~~~~~~-~~-~~~~~~~~~~la~~l~~~~p~~~-~~v~f~~sGseA~e~Alk~ar~~~~r~~ 77 (83)
|++++||+||+|++|+.+|++++. .. ..+.+++..+|+++|++++|+++ ++|+|++|||||||+|||+||.|+||++
T Consensus 64 ~~~~lGh~~p~v~~ai~~q~~~~~~~~~~~~~~~~~~~la~~L~~~~p~~~~~~v~f~~sGseA~e~AlklAr~~tgr~~ 143 (451)
T PRK06918 64 GTINVGHSHPKVKEALHKQVDQYIHTGFNVMMYEPYIELAEKLAALAPGSFDKKVLFLNSGAEAVENAVKIARKYTKRQG 143 (451)
T ss_pred hhcCCCCCCHHHHHHHHHHHHhccCccccccccHHHHHHHHHHHHhCCCCCCCEEEEcCCcHHHHHHHHHHHHHHhCCCc
Confidence 578999999999999999999873 32 34668899999999999999765 5999999999999999999999999999
Q ss_pred eEEecC
Q psy6206 78 VITQDQ 83 (83)
Q Consensus 78 ii~~~~ 83 (83)
||+|+|
T Consensus 144 ii~~~~ 149 (451)
T PRK06918 144 IISFSR 149 (451)
T ss_pred EEEECC
Confidence 999975
No 7
>PRK08360 4-aminobutyrate aminotransferase; Provisional
Probab=99.91 E-value=2.3e-24 Score=148.95 Aligned_cols=83 Identities=31% Similarity=0.308 Sum_probs=74.5
Q ss_pred CccCCCCCCHHHHHHHHHHHHhh-ccCC-CCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhhcCCCce
Q psy6206 1 MSLPVGHCHPAVVKAACTQLALL-NTNN-RFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVHTNNDDV 78 (83)
Q Consensus 1 ~~~~lGh~~p~i~~a~~~~~~~~-~~~~-~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~~~r~~i 78 (83)
|++++||+||+|++|+.+|++++ +... .+.+++..+|+++|++.+|.++++|+|++|||||||.|||+||.|+||++|
T Consensus 51 ~~~~lGh~~p~v~~Ai~~ql~~~~~~~~~~~~~~~~~~la~~L~~~~p~~~~~v~f~~sGsEAve~AlklAr~~tgr~~i 130 (443)
T PRK08360 51 AVQNVGHNNPRVVKAIKEQTDKLIHYTPIYGFPVEPLLLAEKLIEIAPGDNPKVSFGLSGSDANDGAIKFARAYTKRRKI 130 (443)
T ss_pred hhcccCCCCHHHHHHHHHHHHhccCccccccCcHHHHHHHHHHHHhCCCCCCEEEEcCCHHHHHHHHHHHHHHhcCCCeE
Confidence 57899999999999999999987 3332 345788899999999999987789999999999999999999999999999
Q ss_pred EEecC
Q psy6206 79 ITQDQ 83 (83)
Q Consensus 79 i~~~~ 83 (83)
|+|+|
T Consensus 131 i~~~~ 135 (443)
T PRK08360 131 LSYLR 135 (443)
T ss_pred EEEeC
Confidence 99874
No 8
>TIGR03372 putres_am_tran putrescine aminotransferase. Members of this family are putrescine aminotransferase, as found in Escherichia coli, Erwinia carotovora subsp. atroseptica, and closely related species. This pyridoxal phosphate enzyme, as characterized in E. coli, can act also on cadaverine and, more weakly, spermidine.
Probab=99.91 E-value=1.9e-24 Score=149.48 Aligned_cols=83 Identities=34% Similarity=0.431 Sum_probs=74.5
Q ss_pred CccCCCCCCHHHHHHHHHHHHhhcc-CCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhhc---CCC
Q psy6206 1 MSLPVGHCHPAVVKAACTQLALLNT-NNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVHT---NND 76 (83)
Q Consensus 1 ~~~~lGh~~p~i~~a~~~~~~~~~~-~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~~---~r~ 76 (83)
|++++||+||+|++|+.+|++++.. +..+.+++..+|+++|++.+|.++++|+|++|||||||.|+|+||.|+ ||+
T Consensus 85 ~~~~lGh~hp~v~~Av~~ql~~l~~~~~~~~~~~~~~lAe~L~~~~p~~~~~v~f~~SGsEA~e~AlklAr~~t~~~gr~ 164 (442)
T TIGR03372 85 GIFNVGHRNPNVIAAVENQLAKQPLHSQELLDPLRALLAKTLAALTPGKLKYSFFCNSGTESVEAALKLAKAYQSPRGKF 164 (442)
T ss_pred HhhhcCCCCHHHHHHHHHHHHhCCCcccccCCHHHHHHHHHHHHhCCCCcCEEEEeCCchHHHHHHHHHHHHHHhhcCCc
Confidence 4789999999999999999999843 334568899999999999999878899999999999999999999996 899
Q ss_pred ceEEecC
Q psy6206 77 DVITQDQ 83 (83)
Q Consensus 77 ~ii~~~~ 83 (83)
+||+|+|
T Consensus 165 ~ii~~~~ 171 (442)
T TIGR03372 165 TFIAASG 171 (442)
T ss_pred EEEEECC
Confidence 9999875
No 9
>PRK05965 hypothetical protein; Provisional
Probab=99.91 E-value=2.3e-24 Score=149.45 Aligned_cols=83 Identities=28% Similarity=0.384 Sum_probs=73.9
Q ss_pred CccCCCCCCHHHHHHHHHHHHhhc-cCC--CCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhh-----
Q psy6206 1 MSLPVGHCHPAVVKAACTQLALLN-TNN--RFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVH----- 72 (83)
Q Consensus 1 ~~~~lGh~~p~i~~a~~~~~~~~~-~~~--~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~----- 72 (83)
|++++||+||+|++|+.+|++++. ... .+.+++..+|+++|++.+|.++++|+|++|||||||+|||+||.|
T Consensus 56 ~~~~lGh~~p~i~~Ai~~q~~~~~~~~~~~~~~~~~~~~lae~L~~~~p~~~~~v~f~~sGSEAve~AlKlAr~~~~~~g 135 (459)
T PRK05965 56 WCVNVGYGQESIVEAAAEQMRELPYATGYFHFGSEPAIRLAAKLAERAPGSLNHVYFTLGGSDAVDSAVRFIRHYWNATG 135 (459)
T ss_pred HhccCCCCCHHHHHHHHHHHHhcCCcccccccCCHHHHHHHHHHHhhCCCCcCEEEEeCChhHHHHHHHHHHHHHHHhcC
Confidence 578999999999999999999873 222 467899999999999999977899999999999999999999998
Q ss_pred -cCCCceEEecC
Q psy6206 73 -TNNDDVITQDQ 83 (83)
Q Consensus 73 -~~r~~ii~~~~ 83 (83)
++|++||+|++
T Consensus 136 ~~~r~kii~~~~ 147 (459)
T PRK05965 136 RPSKKQFISLER 147 (459)
T ss_pred CCCccEEEEecC
Confidence 45889999975
No 10
>PRK05639 4-aminobutyrate aminotransferase; Provisional
Probab=99.91 E-value=2.5e-24 Score=149.25 Aligned_cols=83 Identities=27% Similarity=0.320 Sum_probs=73.9
Q ss_pred CccCCCCCCHHHHHHHHHHHHhhc-cCC-CCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhhcCCCce
Q psy6206 1 MSLPVGHCHPAVVKAACTQLALLN-TNN-RFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVHTNNDDV 78 (83)
Q Consensus 1 ~~~~lGh~~p~i~~a~~~~~~~~~-~~~-~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~~~r~~i 78 (83)
|++++||+||+|++|+.+|++++. ... .+++++..+|+++|++.+|.+.++|+|++|||||||+|||+||.++||++|
T Consensus 63 ~~~~lGh~~p~i~~Ai~~ql~~~~~~~~~~~~~~~~~~lae~L~~~~p~~~~~v~f~~SGsEA~e~AlklAr~~tgr~~i 142 (457)
T PRK05639 63 AAASTGYSHPKLVKAVQEQVALIQHSMIGYTHSERAIRVAEKLAEISPIENPKVLFGLSGSDAVDMAIKVSKFSTRRPWI 142 (457)
T ss_pred HhhccCCCCHHHHHHHHHHHHhccccccCccCCHHHHHHHHHHHhhCCCCcCEEEEeCchHHHHHHHHHHHHHhcCCCeE
Confidence 578999999999999999999873 322 344688899999999999977789999999999999999999999999999
Q ss_pred EEecC
Q psy6206 79 ITQDQ 83 (83)
Q Consensus 79 i~~~~ 83 (83)
|+|+|
T Consensus 143 i~~~~ 147 (457)
T PRK05639 143 LAFIG 147 (457)
T ss_pred EEECC
Confidence 99875
No 11
>PRK07482 hypothetical protein; Provisional
Probab=99.91 E-value=4e-24 Score=148.35 Aligned_cols=83 Identities=18% Similarity=0.250 Sum_probs=74.1
Q ss_pred CccCCCCCCHHHHHHHHHHHHhhc-cC--CCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhhc----
Q psy6206 1 MSLPVGHCHPAVVKAACTQLALLN-TN--NRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVHT---- 73 (83)
Q Consensus 1 ~~~~lGh~~p~i~~a~~~~~~~~~-~~--~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~~---- 73 (83)
|++++||+||+|++|+.+|++++. .. ..+++++..+|+++|++.+|.++++|+|++|||||||+|||+||+|+
T Consensus 60 ~~~~lGh~~p~v~~Av~~q~~~~~~~~~~~~~~~~~~~~lAe~L~~~~p~~~~~v~f~~sGSEAve~AlKlAr~~~~~~g 139 (461)
T PRK07482 60 YCVNVGYGRTEVAEAIAEQAKELAYYHTYVGHGTEASITLSKRIIDRAPAGMSKVYYGLSGSDANETQIKLVWYYNNVLG 139 (461)
T ss_pred hhhcCCCCCHHHHHHHHHHHHhcCccccccccCCHHHHHHHHHHHHhCCCCcCEEEEeCchHHHHHHHHHHHHHHHHhcC
Confidence 678999999999999999999973 22 25778999999999999999878999999999999999999999884
Q ss_pred --CCCceEEecC
Q psy6206 74 --NNDDVITQDQ 83 (83)
Q Consensus 74 --~r~~ii~~~~ 83 (83)
+|++||+|+|
T Consensus 140 ~~~r~~Ii~~~~ 151 (461)
T PRK07482 140 RPEKKKIISRWR 151 (461)
T ss_pred CCCCceEEEecC
Confidence 5889999875
No 12
>PRK07495 4-aminobutyrate aminotransferase; Provisional
Probab=99.91 E-value=4.8e-24 Score=146.72 Aligned_cols=83 Identities=31% Similarity=0.437 Sum_probs=74.3
Q ss_pred CccCCCCCCHHHHHHHHHHHHhhc-cC-CCCcchHHHHHHHHHHhhCCCCC-CeEEeeCChHHHHHHHHHHHHhhcCCCc
Q psy6206 1 MSLPVGHCHPAVVKAACTQLALLN-TN-NRFLHDNLVLCARKLASLLPDPL-SVCFFVNSGSEANDLALRLARVHTNNDD 77 (83)
Q Consensus 1 ~~~~lGh~~p~i~~a~~~~~~~~~-~~-~~~~~~~~~~la~~l~~~~p~~~-~~v~f~~sGseA~e~Alk~ar~~~~r~~ 77 (83)
|++++||+||+|++|+.+|++++. .. ..++++...+|+++|++.+|++. ++|+|++|||||||.|||+||.++||++
T Consensus 50 ~~~~lGh~~p~v~~ai~~ql~~l~~~~~~~~~~~~~~~la~~l~~~~p~~~~~~v~f~~SGseA~e~AlklAr~~tgr~~ 129 (425)
T PRK07495 50 AVVNTGHRHPRVIAAVKAQLDRFTHTCHQVVPYENYVRLAERLNALVPGDFAKKTIFVTTGAEAVENAVKIARAATGRSA 129 (425)
T ss_pred HhhccCCCCHHHHHHHHHHHhhccCcccCccCCHHHHHHHHHHHHhCCCCCCCEEEECCchHHHHHHHHHHHHHhhCCCe
Confidence 578999999999999999999873 32 35678899999999999998754 7999999999999999999999999999
Q ss_pred eEEecC
Q psy6206 78 VITQDQ 83 (83)
Q Consensus 78 ii~~~~ 83 (83)
||+|+|
T Consensus 130 ii~~~~ 135 (425)
T PRK07495 130 VIAFGG 135 (425)
T ss_pred EEEECC
Confidence 999875
No 13
>PRK05964 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=99.91 E-value=5.5e-24 Score=146.02 Aligned_cols=83 Identities=29% Similarity=0.379 Sum_probs=74.6
Q ss_pred CccCCCCCCHHHHHHHHHHHHhhc-cC-CCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhh------
Q psy6206 1 MSLPVGHCHPAVVKAACTQLALLN-TN-NRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVH------ 72 (83)
Q Consensus 1 ~~~~lGh~~p~i~~a~~~~~~~~~-~~-~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~------ 72 (83)
|++++||+||+|++|+.+|++++. .. ..+++++..+|+++|++.+|.++++|+|++|||||||+|+|+||.|
T Consensus 52 ~~~~lGh~~p~v~~ai~~q~~~~~~~~~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~A~klar~~~~~~~~ 131 (423)
T PRK05964 52 WVATHGHNHPYIDQAIREQLDRLDHVIFAGFTHEPAERLAQRLVALTPGGLDHVFFSDSGSVAVEVALKMALQYWRNRGE 131 (423)
T ss_pred HhccCCCCCHHHHHHHHHHHhhCCCccccccCCHHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHHHHHHHHhcCC
Confidence 578999999999999999999874 22 2577899999999999999977899999999999999999999998
Q ss_pred cCCCceEEecC
Q psy6206 73 TNNDDVITQDQ 83 (83)
Q Consensus 73 ~~r~~ii~~~~ 83 (83)
++|++||+|+|
T Consensus 132 ~~r~~ii~~~~ 142 (423)
T PRK05964 132 PGRSRFLSLRG 142 (423)
T ss_pred CCCcEEEEEcC
Confidence 68999999975
No 14
>TIGR00700 GABAtrnsam 4-aminobutyrate aminotransferase, prokaryotic type. Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.
Probab=99.91 E-value=5.7e-24 Score=145.90 Aligned_cols=83 Identities=35% Similarity=0.422 Sum_probs=73.8
Q ss_pred CccCCCCCCHHHHHHHHHHHHhhc-cC-CCCcchHHHHHHHHHHhhCCC-CCCeEEeeCChHHHHHHHHHHHHhhcCCCc
Q psy6206 1 MSLPVGHCHPAVVKAACTQLALLN-TN-NRFLHDNLVLCARKLASLLPD-PLSVCFFVNSGSEANDLALRLARVHTNNDD 77 (83)
Q Consensus 1 ~~~~lGh~~p~i~~a~~~~~~~~~-~~-~~~~~~~~~~la~~l~~~~p~-~~~~v~f~~sGseA~e~Alk~ar~~~~r~~ 77 (83)
|++++||+||+|++|+.+|++++. .. ..+++++..+|+++|.+.+|. ++++|+|++|||||||+|||+||.|+||++
T Consensus 43 ~~~~lGh~~p~v~~a~~~ql~~~~~~~~~~~~~~~~~~la~~l~~~~p~~~~~~v~f~~sGseA~e~AlklAr~~tgr~~ 122 (420)
T TIGR00700 43 AVLNIGHSHPRVVDAVRTQVAEFTHTCFMVTPYEGYVALAEKLNRIAPGSGPKKSVFFNSGAEAVENAVKIARSYTGRPG 122 (420)
T ss_pred HhccCCCCCHHHHHHHHHHHHhccCccccccCChHHHHHHHHHHHhCCCCCCCEEEEeCCcHHHHHHHHHHHHHhcCCCc
Confidence 578999999999999999999873 32 246678899999999999984 468999999999999999999999999999
Q ss_pred eEEecC
Q psy6206 78 VITQDQ 83 (83)
Q Consensus 78 ii~~~~ 83 (83)
||+|+|
T Consensus 123 ii~~~~ 128 (420)
T TIGR00700 123 VVAFDH 128 (420)
T ss_pred EEEECC
Confidence 999975
No 15
>PRK08593 4-aminobutyrate aminotransferase; Provisional
Probab=99.91 E-value=5.3e-24 Score=147.18 Aligned_cols=83 Identities=34% Similarity=0.386 Sum_probs=74.2
Q ss_pred CccCCCCCCHHHHHHHHHHHHhhc-cC-CCCcchHHHHHHHHHHhhCCCCC-CeEEeeCChHHHHHHHHHHHHhhcCCCc
Q psy6206 1 MSLPVGHCHPAVVKAACTQLALLN-TN-NRFLHDNLVLCARKLASLLPDPL-SVCFFVNSGSEANDLALRLARVHTNNDD 77 (83)
Q Consensus 1 ~~~~lGh~~p~i~~a~~~~~~~~~-~~-~~~~~~~~~~la~~l~~~~p~~~-~~v~f~~sGseA~e~Alk~ar~~~~r~~ 77 (83)
|++++||+||+|++|+.+|++++. .. ..+.+++..+|+++|++.+|.+. ++|+|++|||||||.|||+||.++||++
T Consensus 52 ~~~~lGH~~p~v~~Ai~~ql~~~~~~~~~~~~~~~~~~lae~L~~~~p~~~~~~v~f~~SGseA~e~AiklAr~~tgr~~ 131 (445)
T PRK08593 52 SSQNVGHAPPRVVEAIKAQADKFIHYTPAYMYHEPLVRLAKKLCELAPGDFEKRVTFGLSGSDANDGIIKFARAYTGRPY 131 (445)
T ss_pred HhhcCCCCCHHHHHHHHHHHHhccCccccccCCHHHHHHHHHHHHhCCCCCCCEEEECCchHHHHHHHHHHHHHhhCCCe
Confidence 578999999999999999999873 32 24678999999999999998754 6999999999999999999999999999
Q ss_pred eEEecC
Q psy6206 78 VITQDQ 83 (83)
Q Consensus 78 ii~~~~ 83 (83)
||+|+|
T Consensus 132 ii~~~~ 137 (445)
T PRK08593 132 IISFTN 137 (445)
T ss_pred EEEECC
Confidence 999875
No 16
>PRK05769 4-aminobutyrate aminotransferase; Provisional
Probab=99.91 E-value=6.7e-24 Score=146.56 Aligned_cols=83 Identities=34% Similarity=0.452 Sum_probs=74.3
Q ss_pred CccCCCCCCHHHHHHHHHHHHhhc-cC-CCCcchHHHHHHHHHHhhCCCC-CCeEEeeCChHHHHHHHHHHHHhhcCCCc
Q psy6206 1 MSLPVGHCHPAVVKAACTQLALLN-TN-NRFLHDNLVLCARKLASLLPDP-LSVCFFVNSGSEANDLALRLARVHTNNDD 77 (83)
Q Consensus 1 ~~~~lGh~~p~i~~a~~~~~~~~~-~~-~~~~~~~~~~la~~l~~~~p~~-~~~v~f~~sGseA~e~Alk~ar~~~~r~~ 77 (83)
|++++||+||+|++|+.+|++++. .. ..+.+++..+|+++|++.+|.+ +++|+|++|||||||.|+|+||.++||++
T Consensus 64 ~~~~lGh~~p~v~~Ai~~ql~~~~~~~~~~~~~~~~~~lAe~L~~~~p~~~~~~v~f~~SGsEA~e~AlklAr~~tgr~~ 143 (441)
T PRK05769 64 AVTNVGHAHPKVVKAVKEQAEKFLHYSLTDFYYEPAVELAERLVEIAPGGFEKKVFFTNSGTESNEAAIKIARYHTGRKY 143 (441)
T ss_pred hhcccCCCCHHHHHHHHHHHHhccCccCcccCCHHHHHHHHHHHHhCCCCCCCEEEECCchHHHHHHHHHHHHHHhCCCe
Confidence 578999999999999999999873 32 3467889999999999999853 68999999999999999999999999999
Q ss_pred eEEecC
Q psy6206 78 VITQDQ 83 (83)
Q Consensus 78 ii~~~~ 83 (83)
||+|+|
T Consensus 144 Ii~~~~ 149 (441)
T PRK05769 144 IIAFLG 149 (441)
T ss_pred EEEECC
Confidence 999875
No 17
>PRK11522 putrescine--2-oxoglutarate aminotransferase; Provisional
Probab=99.91 E-value=5.7e-24 Score=147.58 Aligned_cols=83 Identities=34% Similarity=0.436 Sum_probs=74.5
Q ss_pred CccCCCCCCHHHHHHHHHHHHhhcc-CCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhhcC---CC
Q psy6206 1 MSLPVGHCHPAVVKAACTQLALLNT-NNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVHTN---ND 76 (83)
Q Consensus 1 ~~~~lGh~~p~i~~a~~~~~~~~~~-~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~~~---r~ 76 (83)
|++++||+||+|++|+.+|++++.. +..+++++..+|+++|++.+|++.++|+|++|||||||.|+|+||.|++ |+
T Consensus 92 ~~~~lGH~~p~v~~Ai~~ql~~l~~~~~~~~~~~~~~lae~L~~~~p~~~~~v~f~~SGsEAve~AlklAr~~t~~~gr~ 171 (459)
T PRK11522 92 GIFNVGHRNPVVVSAVQNQLAKQPLHSQELLDPLRAMLAKTLAALTPGKLKYSFFCNSGTESVEAALKLAKAYQSPRGKF 171 (459)
T ss_pred HhhhcCCCCHHHHHHHHHHHhhCcccccccCCHHHHHHHHHHHHhCCCCCCEEEEeCCchHHHHHHHHHHHHHhccCCCc
Confidence 5789999999999999999998843 3456788999999999999998889999999999999999999999995 77
Q ss_pred ceEEecC
Q psy6206 77 DVITQDQ 83 (83)
Q Consensus 77 ~ii~~~~ 83 (83)
+||+|+|
T Consensus 172 ~ii~~~~ 178 (459)
T PRK11522 172 TFIATSG 178 (459)
T ss_pred EEEEecC
Confidence 8999875
No 18
>PRK07986 adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated
Probab=99.91 E-value=6.8e-24 Score=146.19 Aligned_cols=83 Identities=24% Similarity=0.358 Sum_probs=74.6
Q ss_pred CccCCCCCCHHHHHHHHHHHHhhc-cC-CCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhh-----c
Q psy6206 1 MSLPVGHCHPAVVKAACTQLALLN-TN-NRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVH-----T 73 (83)
Q Consensus 1 ~~~~lGh~~p~i~~a~~~~~~~~~-~~-~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~-----~ 73 (83)
|++++||+||+|++|+.+|++++. .. ..+.+++..+|+++|.+++|.++++|+|++|||||||+|||+||.| +
T Consensus 53 ~~~~lGh~~p~i~~Ai~~q~~~~~~~~~~~~~~~~~~~la~~L~~~~p~~~~~v~f~~SGsEAve~AlklAr~~~~~~g~ 132 (428)
T PRK07986 53 WAAIHGYNHPQLNAAMKSQIDAMSHVMFGGITHPPAIELCRKLVAMTPQPLECVFLADSGSVAVEVAMKMALQYWQAKGE 132 (428)
T ss_pred HhhcCCCCCHHHHHHHHHHHhhcCCccccccCCHHHHHHHHHHHhhCCCCcCEEEEeCCcHHHHHHHHHHHHHHHHhcCC
Confidence 578999999999999999999973 32 2457899999999999999987899999999999999999999998 6
Q ss_pred CCCceEEecC
Q psy6206 74 NNDDVITQDQ 83 (83)
Q Consensus 74 ~r~~ii~~~~ 83 (83)
+|++||+|+|
T Consensus 133 ~r~kii~~~~ 142 (428)
T PRK07986 133 PRQRFLTLRH 142 (428)
T ss_pred CCcEEEEECC
Confidence 7999999985
No 19
>PRK06173 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=99.91 E-value=7.7e-24 Score=145.91 Aligned_cols=83 Identities=31% Similarity=0.394 Sum_probs=74.4
Q ss_pred CccCCCCCCHHHHHHHHHHHHhhc-cC-CCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhh------
Q psy6206 1 MSLPVGHCHPAVVKAACTQLALLN-TN-NRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVH------ 72 (83)
Q Consensus 1 ~~~~lGh~~p~i~~a~~~~~~~~~-~~-~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~------ 72 (83)
|++++||+||+|++|+.+|++++. .. ..+.+++..+|+++|++.+|.++++|+|++|||||||+|||+||.|
T Consensus 54 ~~~~lGh~~p~v~~ai~~q~~~~~~~~~~~~~~~~~~~lae~L~~~~p~~~~~v~f~~sGseAve~AlklAr~~~~~~g~ 133 (429)
T PRK06173 54 WAALHGYNHPRLNAAATNQLAKMSHIMFGGFTHEPAVELAQKLLEILPPSLNKIFFADSGSVAVEVAMKMALQYQQAKGE 133 (429)
T ss_pred HhccCCCCCHHHHHHHHHHHHhcCCccccccCCHHHHHHHHHHHhhCCCCcCEEEEeCCchHHHHHHHHHHHHHHHHhCC
Confidence 578999999999999999999973 32 3567899999999999999988899999999999999999999998
Q ss_pred cCCCceEEecC
Q psy6206 73 TNNDDVITQDQ 83 (83)
Q Consensus 73 ~~r~~ii~~~~ 83 (83)
++|++||+|+|
T Consensus 134 ~~r~~ii~~~~ 144 (429)
T PRK06173 134 VQRTKFATIRS 144 (429)
T ss_pred CCCcEEEEECC
Confidence 46889999975
No 20
>PRK07483 hypothetical protein; Provisional
Probab=99.91 E-value=8.5e-24 Score=146.14 Aligned_cols=83 Identities=31% Similarity=0.434 Sum_probs=74.3
Q ss_pred CccCCCCCCHHHHHHHHHHHHhhc-cC-CCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhh------
Q psy6206 1 MSLPVGHCHPAVVKAACTQLALLN-TN-NRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVH------ 72 (83)
Q Consensus 1 ~~~~lGh~~p~i~~a~~~~~~~~~-~~-~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~------ 72 (83)
|++++||+||+|++++.+|++++. .. ..+.+++..+|+++|.+.+|.++++|+|++|||||||+|||+||.|
T Consensus 40 ~~~~lGh~~p~v~~av~~ql~~~~~~~~~~~~~~~~~~lae~L~~~~p~~~~~v~f~~sGsEAve~AlklAr~~~~~~g~ 119 (443)
T PRK07483 40 AVSCLGHSHPRVIAAIHAQIDRLAYAHTSFFTTEPAEALADRLVAAAPAGLEHVYFVSGGSEAVEAALKLARQYFVEIGQ 119 (443)
T ss_pred hhhccCCCCHHHHHHHHHHHHhccCccccccCCHHHHHHHHHHHHhCCCCCCEEEEcCCcHHHHHHHHHHHHHHHHhcCC
Confidence 578999999999999999999873 22 3467889999999999999977899999999999999999999999
Q ss_pred cCCCceEEecC
Q psy6206 73 TNNDDVITQDQ 83 (83)
Q Consensus 73 ~~r~~ii~~~~ 83 (83)
++|++||+|++
T Consensus 120 ~~r~~Ii~~~~ 130 (443)
T PRK07483 120 PQRRHFIARRQ 130 (443)
T ss_pred CCCcEEEEECC
Confidence 68899999875
No 21
>PRK06777 4-aminobutyrate aminotransferase; Provisional
Probab=99.91 E-value=8.2e-24 Score=145.32 Aligned_cols=83 Identities=30% Similarity=0.346 Sum_probs=73.9
Q ss_pred CccCCCCCCHHHHHHHHHHHHhhc-c-CCCCcchHHHHHHHHHHhhCCC-CCCeEEeeCChHHHHHHHHHHHHhhcCCCc
Q psy6206 1 MSLPVGHCHPAVVKAACTQLALLN-T-NNRFLHDNLVLCARKLASLLPD-PLSVCFFVNSGSEANDLALRLARVHTNNDD 77 (83)
Q Consensus 1 ~~~~lGh~~p~i~~a~~~~~~~~~-~-~~~~~~~~~~~la~~l~~~~p~-~~~~v~f~~sGseA~e~Alk~ar~~~~r~~ 77 (83)
|++++||+||+|++++.+|++++. . ...+++++..+|+++|.+.+|. +.++++|++|||||||+|+|+||.++||++
T Consensus 50 ~~~~lGh~~p~v~~ai~~ql~~~~~~~~~~~~~~~~~~la~~l~~~~p~~~~~~~~f~~sGseA~e~AlklAr~~tgr~~ 129 (421)
T PRK06777 50 AVLNTGHRHPKVVAAVRQQLDQFTHTAYQIVPYASYVTLAERINALAPIDGPAKTAFFTTGAEAVENAVKIARAYTGRPG 129 (421)
T ss_pred HhhccCCCCHHHHHHHHHHHhhcccccccccCChHHHHHHHHHHHhCCCCCCceEEEeCCcHHHHHHHHHHHHHhhCCCe
Confidence 568999999999999999999983 2 2345788899999999999984 578999999999999999999999999999
Q ss_pred eEEecC
Q psy6206 78 VITQDQ 83 (83)
Q Consensus 78 ii~~~~ 83 (83)
||+|+|
T Consensus 130 ii~~~~ 135 (421)
T PRK06777 130 VIAFGG 135 (421)
T ss_pred EEEEcC
Confidence 999975
No 22
>PRK00615 glutamate-1-semialdehyde aminotransferase; Provisional
Probab=99.90 E-value=1.3e-23 Score=144.98 Aligned_cols=82 Identities=30% Similarity=0.239 Sum_probs=74.3
Q ss_pred CccCCCCCCHHHHHHHHHHHHhhccCCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhhcCCCceEE
Q psy6206 1 MSLPVGHCHPAVVKAACTQLALLNTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVHTNNDDVIT 80 (83)
Q Consensus 1 ~~~~lGh~~p~i~~a~~~~~~~~~~~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~~~r~~ii~ 80 (83)
|++++||+||+|++|+.+|++++.. ..+++++..+|+++|++.+|.+.++|+|++|||||+|.|||+||.|+||++||+
T Consensus 63 ~~~~lGh~~p~v~~ai~~q~~~~~~-~~~~~~~~~~la~~L~~~~~~~~~~v~f~~SGsEA~e~AiklAr~~tgr~~ii~ 141 (433)
T PRK00615 63 GSLIHGHSHPKICDAIQQGAERGTS-YGLTSEQEILFAEELFSYLGLEDHKIRFVSSGTEATMTAVRLARGITGRSIIIK 141 (433)
T ss_pred hccccCCCCHHHHHHHHHHHHhCCC-CCCCCHHHHHHHHHHHHhCCCCcCEEEEeCchHHHHHHHHHHHHHhhCCCEEEE
Confidence 5789999999999999999998742 356788999999999999987668999999999999999999999999999999
Q ss_pred ecC
Q psy6206 81 QDQ 83 (83)
Q Consensus 81 ~~~ 83 (83)
|++
T Consensus 142 ~~~ 144 (433)
T PRK00615 142 FLG 144 (433)
T ss_pred EcC
Confidence 875
No 23
>PRK06082 4-aminobutyrate aminotransferase; Provisional
Probab=99.90 E-value=1.1e-23 Score=146.15 Aligned_cols=83 Identities=30% Similarity=0.422 Sum_probs=75.3
Q ss_pred CccCCCCCCHHHHHHHHHHHHhhc-cCCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhhcCCCceE
Q psy6206 1 MSLPVGHCHPAVVKAACTQLALLN-TNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVHTNNDDVI 79 (83)
Q Consensus 1 ~~~~lGh~~p~i~~a~~~~~~~~~-~~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~~~r~~ii 79 (83)
|++++||+||+|++++.+|++++. ..+.+.+++..+|+++|++.+|.+.++|+|++|||||||+|+|+||+|+||++||
T Consensus 81 ~~~~lGh~~p~v~~Ai~~ql~~~~~~~~~~~~~~~~~lae~L~~~~p~~~~~v~f~~sGseAve~AlklAr~~tgr~~ii 160 (459)
T PRK06082 81 NVHQLGYGHPHVIEKVKEQMAKLPFSPRRFTNETAIECAEKLTEIAGGELNRVLFAPGGTSAIGMALKLARHITGNFKVV 160 (459)
T ss_pred hhcccCCCCHHHHHHHHHHHHhCCCccCccCCHHHHHHHHHHHHhCCCCCCEEEECCCcHHHHHHHHHHHHHhcCCCEEE
Confidence 468899999999999999999873 3345778999999999999998767899999999999999999999999999999
Q ss_pred EecC
Q psy6206 80 TQDQ 83 (83)
Q Consensus 80 ~~~~ 83 (83)
+|+|
T Consensus 161 ~~~~ 164 (459)
T PRK06082 161 SLWD 164 (459)
T ss_pred EEeC
Confidence 9975
No 24
>PRK08117 4-aminobutyrate aminotransferase; Provisional
Probab=99.90 E-value=1.8e-23 Score=143.83 Aligned_cols=83 Identities=34% Similarity=0.404 Sum_probs=74.8
Q ss_pred CccCCCCCCHHHHHHHHHHHHhhc-cC-CCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhhcCCCce
Q psy6206 1 MSLPVGHCHPAVVKAACTQLALLN-TN-NRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVHTNNDDV 78 (83)
Q Consensus 1 ~~~~lGh~~p~i~~a~~~~~~~~~-~~-~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~~~r~~i 78 (83)
|++++||+||+|++|+.+|++++. .+ ..+.++...+|+++|++.+|++.++|+|++|||||||.|||+||.++||++|
T Consensus 53 ~~~~lGh~~p~v~~a~~~q~~~~~~~~~~~~~~~~~~~la~~L~~~~~~~~~~v~f~~SGseA~e~AlklAr~~tgr~~i 132 (433)
T PRK08117 53 AVANVGHRHPKVVQAIKEQADKLMHGPSGVIYYESILKLAEELAEITPGGLDCFFFSNSGAEAIEGALKLAKHVTKRPYI 132 (433)
T ss_pred hhccCCCCCHHHHHHHHHHHHhccCccccccCCHHHHHHHHHHHHhCCCCCCEEEEeCcHHHHHHHHHHHHHHhcCCCeE
Confidence 478999999999999999999873 22 3467888999999999999877899999999999999999999999999999
Q ss_pred EEecC
Q psy6206 79 ITQDQ 83 (83)
Q Consensus 79 i~~~~ 83 (83)
|+|+|
T Consensus 133 i~~~~ 137 (433)
T PRK08117 133 ISFTG 137 (433)
T ss_pred EEECC
Confidence 99975
No 25
>PRK13360 omega amino acid--pyruvate transaminase; Provisional
Probab=99.90 E-value=1.3e-23 Score=145.20 Aligned_cols=83 Identities=29% Similarity=0.427 Sum_probs=73.8
Q ss_pred CccCCCCCCHHHHHHHHHHHHhhc-cC-CCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhhc-----
Q psy6206 1 MSLPVGHCHPAVVKAACTQLALLN-TN-NRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVHT----- 73 (83)
Q Consensus 1 ~~~~lGh~~p~i~~a~~~~~~~~~-~~-~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~~----- 73 (83)
|++++||+||+|++|+.+|++++. .. ..+.+++..+|+++|++++|.++++|+|++|||||||+|+|+||.|+
T Consensus 56 ~~~~lGh~~p~v~~ai~~ql~~l~~~~~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~AlklAr~~~~~~g~ 135 (442)
T PRK13360 56 WCVNAGHGRPEIVEAVRAQAGELDYAPAFQMGHPKAFELANRIAEIAPGGLNHVFFTNSGSESVDTALKIALAYHRARGE 135 (442)
T ss_pred HHhccCCCCHHHHHHHHHHHHhCCCcccCCcCCHHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHHHHHHHHhcCC
Confidence 578999999999999999999873 22 34678999999999999999878999999999999999999999985
Q ss_pred -CCCceEEecC
Q psy6206 74 -NNDDVITQDQ 83 (83)
Q Consensus 74 -~r~~ii~~~~ 83 (83)
+|++||+|+|
T Consensus 136 ~~r~~ii~~~~ 146 (442)
T PRK13360 136 GSRTRLIGRER 146 (442)
T ss_pred CCCcEEEEEcC
Confidence 5789999975
No 26
>PRK12389 glutamate-1-semialdehyde aminotransferase; Provisional
Probab=99.90 E-value=1.8e-23 Score=143.82 Aligned_cols=81 Identities=27% Similarity=0.288 Sum_probs=73.6
Q ss_pred CccCCCCCCHHHHHHHHHHHHhhccCCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhhcCCCceEE
Q psy6206 1 MSLPVGHCHPAVVKAACTQLALLNTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVHTNNDDVIT 80 (83)
Q Consensus 1 ~~~~lGh~~p~i~~a~~~~~~~~~~~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~~~r~~ii~ 80 (83)
|++++||+||+|++|+.+|++++.. ..+++++..+|+++|++.+|+ .++|+|++|||||||.|+|+||.|+||++||+
T Consensus 63 ~~~~lGh~~p~v~~ai~~q~~~~~~-~~~~~~~~~~la~~l~~~~p~-~~~v~f~~sGseA~e~AlklAr~~tgr~~ii~ 140 (428)
T PRK12389 63 GPIITGHAHPHITKAITEAAENGVL-YGTPTELEIEFAKMLKEAIPS-LEKVRFVNSGTEAVMTTIRVARAYTGRTKIIK 140 (428)
T ss_pred cccccCCCCHHHHHHHHHHHHhCCc-cCCCCHHHHHHHHHHHHhCCC-CcEEEEeCCHHHHHHHHHHHHHHhhCCCEEEE
Confidence 5789999999999999999998743 346788999999999999984 78999999999999999999999999999999
Q ss_pred ecC
Q psy6206 81 QDQ 83 (83)
Q Consensus 81 ~~~ 83 (83)
|++
T Consensus 141 ~~~ 143 (428)
T PRK12389 141 FAG 143 (428)
T ss_pred ECC
Confidence 875
No 27
>PRK06917 hypothetical protein; Provisional
Probab=99.90 E-value=2e-23 Score=144.44 Aligned_cols=83 Identities=29% Similarity=0.424 Sum_probs=73.8
Q ss_pred CccCCCCCCHHHHHHHHHHHHhhc-cC-CCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhh------
Q psy6206 1 MSLPVGHCHPAVVKAACTQLALLN-TN-NRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVH------ 72 (83)
Q Consensus 1 ~~~~lGh~~p~i~~a~~~~~~~~~-~~-~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~------ 72 (83)
|++++||+||+|++|+.+|++++. .. ..+.+++..+|+++|++.+|.++++|+|++|||||||+|||+||+|
T Consensus 41 ~~~~lGh~hp~v~~Ai~~ql~~~~~~~~~~~~~~~~~~lae~L~~~~p~~~~~v~f~~sGsEAve~AlklAr~~~~~rg~ 120 (447)
T PRK06917 41 VTAGIGHGVKEIADAIKEQAEEVSFVYRSQFTSEPAEKLAKKLSDLSPGDLNWSFFVNSGSEANETAMKIAIQHFQERGI 120 (447)
T ss_pred HhccCCCCCHHHHHHHHHHHhhCcCccccccCCHHHHHHHHHHHHhCCCCCCEEEEeCChHHHHHHHHHHHHHHHHhcCC
Confidence 578999999999999999999873 22 3467899999999999999987789999999999999999999887
Q ss_pred cCCCceEEecC
Q psy6206 73 TNNDDVITQDQ 83 (83)
Q Consensus 73 ~~r~~ii~~~~ 83 (83)
++|++||+|+|
T Consensus 121 t~r~~ii~~~~ 131 (447)
T PRK06917 121 QGKHKILSRWM 131 (447)
T ss_pred CCCCEEEEECC
Confidence 67899999975
No 28
>PRK09792 4-aminobutyrate transaminase; Provisional
Probab=99.90 E-value=2.3e-23 Score=143.15 Aligned_cols=83 Identities=31% Similarity=0.392 Sum_probs=73.8
Q ss_pred CccCCCCCCHHHHHHHHHHHHhhc-c-CCCCcchHHHHHHHHHHhhCCC-CCCeEEeeCChHHHHHHHHHHHHhhcCCCc
Q psy6206 1 MSLPVGHCHPAVVKAACTQLALLN-T-NNRFLHDNLVLCARKLASLLPD-PLSVCFFVNSGSEANDLALRLARVHTNNDD 77 (83)
Q Consensus 1 ~~~~lGh~~p~i~~a~~~~~~~~~-~-~~~~~~~~~~~la~~l~~~~p~-~~~~v~f~~sGseA~e~Alk~ar~~~~r~~ 77 (83)
|++++||+||+|++++.+|++++. . ...+.+++..+|+++|++.+|. +.++++|++|||||||.|||+||.++||++
T Consensus 50 ~~~~lGh~~p~v~~ai~~ql~~~~~~~~~~~~~~~~~~la~~l~~~~p~~~~~~~~f~~sGseA~e~AlklAr~~tgr~~ 129 (421)
T PRK09792 50 AVLNTGHRHPDLVAAVEQQLQQFTHTAYQIVPYESYVTLAEKINALAPVSGQAKTAFFTTGAEAVENAVKIARAHTGRPG 129 (421)
T ss_pred hhhcCCCCCHHHHHHHHHHHHhccCcccCccCCHHHHHHHHHHHHhCCCCCCceEEEeCChHHHHHHHHHHHHHhcCCCe
Confidence 578999999999999999999873 2 2346788999999999999884 457999999999999999999999999999
Q ss_pred eEEecC
Q psy6206 78 VITQDQ 83 (83)
Q Consensus 78 ii~~~~ 83 (83)
||+|+|
T Consensus 130 ii~~~~ 135 (421)
T PRK09792 130 VIAFSG 135 (421)
T ss_pred EEEECC
Confidence 999975
No 29
>PRK07030 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=99.90 E-value=1.9e-23 Score=145.19 Aligned_cols=83 Identities=23% Similarity=0.406 Sum_probs=74.3
Q ss_pred CccCCCCCCHHHHHHHHHHHHhh-ccC-CCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhh------
Q psy6206 1 MSLPVGHCHPAVVKAACTQLALL-NTN-NRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVH------ 72 (83)
Q Consensus 1 ~~~~lGh~~p~i~~a~~~~~~~~-~~~-~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~------ 72 (83)
|++++||+||+|++++.+|++++ +.. ..+.+++..+|+++|++++|.++++|+|++|||||||+|||+||.|
T Consensus 57 ~~~~lGh~~p~v~~Ai~~ql~~l~~~~~~~~~~~~~~~lae~L~~~~p~~~~~v~f~~sGsEAve~AlKlAr~~~~~~g~ 136 (466)
T PRK07030 57 WVNVFGHANPRINQRIKDQVDQLEHVILAGFSHEPVIELSERLVKITPPGLSRCFYADNGSSAIEVALKMSFHYWRNRGK 136 (466)
T ss_pred HhhcCCCCCHHHHHHHHHHHHhcCCccccccCCHHHHHHHHHHHHhCCCCcCEEEEeCCcHHHHHHHHHHHHHHHHHhCC
Confidence 57899999999999999999997 332 3577899999999999999977889999999999999999999998
Q ss_pred cCCCceEEecC
Q psy6206 73 TNNDDVITQDQ 83 (83)
Q Consensus 73 ~~r~~ii~~~~ 83 (83)
++|++||+|+|
T Consensus 137 t~r~~ii~~~~ 147 (466)
T PRK07030 137 PRKKRFVTLTN 147 (466)
T ss_pred CCCcEEEEECC
Confidence 57889999975
No 30
>PRK05630 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=99.90 E-value=1.7e-23 Score=144.00 Aligned_cols=83 Identities=25% Similarity=0.378 Sum_probs=73.8
Q ss_pred CccCCCCCCHHHHHHHHHHHHhhc-cC-CCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhhc-----
Q psy6206 1 MSLPVGHCHPAVVKAACTQLALLN-TN-NRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVHT----- 73 (83)
Q Consensus 1 ~~~~lGh~~p~i~~a~~~~~~~~~-~~-~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~~----- 73 (83)
|++++||+||+|++++.+|++++. .. ..+.+++..+|+++|++.+|.++++|+|++|||||||+|||+||+|+
T Consensus 50 ~~~~lGh~~p~i~~ai~~q~~~~~~~~~~~~~~~~~~~lae~L~~~~p~~~~~v~f~~SGseA~e~AlklAr~~~~~~g~ 129 (422)
T PRK05630 50 WSAAHGHGHPRLKAAAHKQIDTMSHVMFGGLTHEPAIKLTRKLLNLTDNGLDHVFYSDSGSVSVEVAIKMALQYSKGQGH 129 (422)
T ss_pred HHhcCCCCCHHHHHHHHHHHHhCCCcccCCcCCHHHHHHHHHHHhhCCCCcCEEEEeCCcHHHHHHHHHHHHHHHHhcCC
Confidence 578999999999999999999873 32 24678899999999999998778999999999999999999999985
Q ss_pred -CCCceEEecC
Q psy6206 74 -NNDDVITQDQ 83 (83)
Q Consensus 74 -~r~~ii~~~~ 83 (83)
+|++||+|+|
T Consensus 130 ~~r~~ii~~~~ 140 (422)
T PRK05630 130 PERTRLLTWRS 140 (422)
T ss_pred CCCcEEEEECC
Confidence 6888999875
No 31
>PLN02482 glutamate-1-semialdehyde 2,1-aminomutase
Probab=99.90 E-value=2.4e-23 Score=145.00 Aligned_cols=81 Identities=25% Similarity=0.230 Sum_probs=73.8
Q ss_pred CccCCCCCCHHHHHHHHHHHHhhccCCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhhcCCCceEE
Q psy6206 1 MSLPVGHCHPAVVKAACTQLALLNTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVHTNNDDVIT 80 (83)
Q Consensus 1 ~~~~lGh~~p~i~~a~~~~~~~~~~~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~~~r~~ii~ 80 (83)
|++++||+||+|++++.+|++++.. ...++++..+|+++|++.+|+ .++|+|++|||||+|.|||+||.||||++||+
T Consensus 109 g~~~lGh~~p~v~~av~~ql~~~~~-~~~~~~~~~~lAe~l~~~~p~-~~~v~f~~SGsEA~e~AlklAR~~tgr~~Ii~ 186 (474)
T PLN02482 109 GPAIIGHADDEVLAALAETMKKGTS-FGAPCLLENVLAEMVIDAVPS-VEMVRFVNSGTEACMGVLRLARAYTGREKIIK 186 (474)
T ss_pred cccccCCCCHHHHHHHHHHHhhCCC-CCCCCHHHHHHHHHHHHhCCC-CCEEEEeCChHHHHHHHHHHHHHhcCCCEEEE
Confidence 4678999999999999999998743 345788999999999999986 88999999999999999999999999999999
Q ss_pred ecC
Q psy6206 81 QDQ 83 (83)
Q Consensus 81 ~~~ 83 (83)
|+|
T Consensus 187 ~~g 189 (474)
T PLN02482 187 FEG 189 (474)
T ss_pred ECC
Confidence 975
No 32
>PRK06916 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=99.90 E-value=2.5e-23 Score=144.37 Aligned_cols=83 Identities=23% Similarity=0.317 Sum_probs=74.0
Q ss_pred CccCCCCCCHHHHHHHHHHHHhhc-cC-CCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhh------
Q psy6206 1 MSLPVGHCHPAVVKAACTQLALLN-TN-NRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVH------ 72 (83)
Q Consensus 1 ~~~~lGh~~p~i~~a~~~~~~~~~-~~-~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~------ 72 (83)
|++++||+||+|++|+.+|++++. .. ..+.+++..+|+++|.+.+|.++++|+|++|||||||.|||+||.|
T Consensus 66 ~~~~lGh~~p~v~~Ai~~ql~~l~~~~~~~~~~~~~~~lae~L~~~~p~~~~~v~f~~SGseAve~AlklAr~~~~~~g~ 145 (460)
T PRK06916 66 WLNVHGHQVPELDEAIREQLNKIAHSTLLGLANVPSILLAEKLIEVVPEGLKKVFYSDSGATAVEIAIKMAFQYWQNKGK 145 (460)
T ss_pred HHhhcCCCCHHHHHHHHHHHHhCCCccccccCCHHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHHHHHHHHhcCC
Confidence 467899999999999999999973 32 3467899999999999999987889999999999999999999986
Q ss_pred cCCCceEEecC
Q psy6206 73 TNNDDVITQDQ 83 (83)
Q Consensus 73 ~~r~~ii~~~~ 83 (83)
++|++||+|+|
T Consensus 146 tgr~~ii~~~~ 156 (460)
T PRK06916 146 PKKQRFVTLKN 156 (460)
T ss_pred CCCcEEEEECC
Confidence 67899999985
No 33
>PRK07481 hypothetical protein; Provisional
Probab=99.90 E-value=2.4e-23 Score=144.11 Aligned_cols=83 Identities=25% Similarity=0.350 Sum_probs=73.1
Q ss_pred CccCCCCCCHHHHHHHHHHHHhhc-cC--CCCcchHHHHHHHHHHhhCC-CCCCeEEeeCChHHHHHHHHHHHHhhc---
Q psy6206 1 MSLPVGHCHPAVVKAACTQLALLN-TN--NRFLHDNLVLCARKLASLLP-DPLSVCFFVNSGSEANDLALRLARVHT--- 73 (83)
Q Consensus 1 ~~~~lGh~~p~i~~a~~~~~~~~~-~~--~~~~~~~~~~la~~l~~~~p-~~~~~v~f~~sGseA~e~Alk~ar~~~--- 73 (83)
|++++||+||+|++|+.+|++++. .. ..+.+++..+|+++|++.+| .++++|+|++|||||||+|||+||.|+
T Consensus 52 ~~~~lGh~~p~v~~Ai~~ql~~~~~~~~~~~~~~~~~~~lae~L~~~~~~~~~~~v~f~~sGsEAve~AlklAr~~~~~~ 131 (449)
T PRK07481 52 WNVNVGHNREEVKEAIVRQLDELEYYSTFDGTTHPRAIELSYELIDMFAPEGMRRVFFSSGGSDSVETALKLARQYWKVR 131 (449)
T ss_pred HhhcCCCCCHHHHHHHHHHHHhccceecccccCCHHHHHHHHHHHHhcCCCCCCEEEEcCchHHHHHHHHHHHHHHHHhc
Confidence 578999999999999999999873 22 24678999999999999984 567899999999999999999999985
Q ss_pred ---CCCceEEecC
Q psy6206 74 ---NNDDVITQDQ 83 (83)
Q Consensus 74 ---~r~~ii~~~~ 83 (83)
+|++||+|+|
T Consensus 132 g~~~r~~ii~~~~ 144 (449)
T PRK07481 132 GQPERTKFISLKQ 144 (449)
T ss_pred CCCCCcEEEEECC
Confidence 6889999985
No 34
>PRK06148 hypothetical protein; Provisional
Probab=99.90 E-value=2.6e-23 Score=154.43 Aligned_cols=82 Identities=60% Similarity=0.844 Sum_probs=75.2
Q ss_pred ccCCCCCCHHHHHHHHHHHHhhccCCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhhcCCCceEEe
Q psy6206 2 SLPVGHCHPAVVKAACTQLALLNTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVHTNNDDVITQ 81 (83)
Q Consensus 2 ~~~lGh~~p~i~~a~~~~~~~~~~~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~~~r~~ii~~ 81 (83)
+.++||+||+|++|+.+|++++.....+.++...+|+++|++.+|+++++|+|+||||||||.|||+||.+|||++||+|
T Consensus 633 ~~~lGH~hp~v~~Ai~~q~~~l~~~~~~~~~~~~~lAe~L~~~~p~~~~~v~f~nSGsEA~e~AlklAr~~tGr~~ii~~ 712 (1013)
T PRK06148 633 VCHVGHAHPRVVAAAARQAARLNTNTRYLHDAIVAYAERLTATLPDGLTVAFFVNSGSEANSLALRLARAHTGQRDAIVL 712 (1013)
T ss_pred hhhcCCCCHHHHHHHHHHHhhcCCcCCcCCHHHHHHHHHHHHhCCCCcCEEEEeCCcHHHHHHHHHHHHHhcCCCeEEEE
Confidence 36899999999999999999884444678899999999999999987899999999999999999999999999999999
Q ss_pred cC
Q psy6206 82 DQ 83 (83)
Q Consensus 82 ~~ 83 (83)
+|
T Consensus 713 ~~ 714 (1013)
T PRK06148 713 DH 714 (1013)
T ss_pred cC
Confidence 75
No 35
>PRK09221 beta alanine--pyruvate transaminase; Provisional
Probab=99.90 E-value=3.5e-23 Score=143.14 Aligned_cols=83 Identities=33% Similarity=0.426 Sum_probs=73.6
Q ss_pred CccCCCCCCHHHHHHHHHHHHhhc-cC-CCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhhc-----
Q psy6206 1 MSLPVGHCHPAVVKAACTQLALLN-TN-NRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVHT----- 73 (83)
Q Consensus 1 ~~~~lGh~~p~i~~a~~~~~~~~~-~~-~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~~----- 73 (83)
|++++||+||+|++++.+|++++. .. ..+.+++..+|+++|.+.+|.++++|+|++|||||||+|+|+||.|+
T Consensus 59 ~~~~lGh~~p~v~~ai~~ql~~l~~~~~~~~~~~~~~~la~~L~~~~p~~~~~v~f~~sGseAve~AlklAr~~~~~~g~ 138 (445)
T PRK09221 59 WCCNAGHGRPEIVEAVARQAATLDYAPAFQMGHPLAFELAERLAELAPGGLDHVFFTNSGSESVDTALKIALAYHRARGQ 138 (445)
T ss_pred hhccCCCCCHHHHHHHHHHHHhccCccccccCCHHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHHHHHHHHhcCC
Confidence 578999999999999999999873 22 24678999999999999999778999999999999999999999985
Q ss_pred -CCCceEEecC
Q psy6206 74 -NNDDVITQDQ 83 (83)
Q Consensus 74 -~r~~ii~~~~ 83 (83)
+|++||+|+|
T Consensus 139 ~~r~~ii~~~~ 149 (445)
T PRK09221 139 GTRTRLIGRER 149 (445)
T ss_pred CCCcEEEEECC
Confidence 4778999875
No 36
>TIGR00709 dat 2,4-diaminobutyrate 4-transaminases. This family consists of L-diaminobutyric acid transaminases. This general designation covers both 2.6.1.76 (diaminobutyrate-2-oxoglutarate transaminase, which uses glutamate as the amino donor in DABA biosynthesis), and 2.6.1.46 (diaminobutyrate--pyruvate transaminase, which uses alanine as the amino donor). Most members with known function are 2.6.1.76, and at least some annotations as 2.6.1.46 in current databases at time of model revision are incorrect. A distinct branch of this family contains examples of 2.6.1.76 nearly all of which are involved in ectoine biosynthesis. A related enzyme is 4-aminobutyrate aminotransferase (EC 2.6.1.19), also called GABA transaminase. These enzymes all are pyridoxal phosphate-containing class III aminotransferase.
Probab=99.90 E-value=3.5e-23 Score=142.96 Aligned_cols=83 Identities=22% Similarity=0.252 Sum_probs=71.8
Q ss_pred CccCCCCCCHHHHHHHHHHHHhh-ccC-CCCcchHHHHHHHHHHhhCCCC---CCeEEeeCChHHHHHHHHHHHHhhcCC
Q psy6206 1 MSLPVGHCHPAVVKAACTQLALL-NTN-NRFLHDNLVLCARKLASLLPDP---LSVCFFVNSGSEANDLALRLARVHTNN 75 (83)
Q Consensus 1 ~~~~lGh~~p~i~~a~~~~~~~~-~~~-~~~~~~~~~~la~~l~~~~p~~---~~~v~f~~sGseA~e~Alk~ar~~~~r 75 (83)
|++++||+||+|++++.+|++++ +.. ..++++...+|+++|++++|.+ ...+||++|||||||.|||+||.|+||
T Consensus 49 ~~~~lGh~~p~i~~ai~~q~~~~~~~~~~~~~~~~~~~lae~L~~~~p~~~~~~~~~f~~~sGsEA~e~AlklAr~~tgr 128 (442)
T TIGR00709 49 GTLALGHNHPNMKQKILDYLQSGLPLHTLDLTTPLKDAFIEALLNIIPKRKMDYKLQFPGPSGADAVEAAIKLAKTYTGR 128 (442)
T ss_pred hhhcCCCCCHHHHHHHHHHHHhccCccccccCcHHHHHHHHHHHHhCCCcCCCccEEEeCCCHHHHHHHHHHHHHHhcCC
Confidence 57899999999999999999986 333 2467889999999999999853 345677899999999999999999999
Q ss_pred CceEEecC
Q psy6206 76 DDVITQDQ 83 (83)
Q Consensus 76 ~~ii~~~~ 83 (83)
++||+|+|
T Consensus 129 ~~Ii~~~~ 136 (442)
T TIGR00709 129 TNVISFSG 136 (442)
T ss_pred CeEEEEcC
Confidence 99999875
No 37
>PRK07036 hypothetical protein; Provisional
Probab=99.90 E-value=3.6e-23 Score=143.77 Aligned_cols=83 Identities=27% Similarity=0.290 Sum_probs=73.6
Q ss_pred CccCCCCCCHHHHHHHHHHHHhhc-cC-C-CCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhh-----
Q psy6206 1 MSLPVGHCHPAVVKAACTQLALLN-TN-N-RFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVH----- 72 (83)
Q Consensus 1 ~~~~lGh~~p~i~~a~~~~~~~~~-~~-~-~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~----- 72 (83)
|++++||+||+|++|+.+|++++. .. . .+.+++..+|+++|.+.+|.++++|+|++|||||||.|||+||.|
T Consensus 61 ~~~~lGh~~p~v~~Ai~~q~~~~~~~~~~~~~~~~~~~~lae~L~~~~p~~~~~v~f~~sGseAve~AlklAr~~~~~~g 140 (466)
T PRK07036 61 WCVNVGYGREEMADAIADQARRLPYYTPFGDMTNAPAAELAAKLAELAPGDLNHVFLTTGGSTAVDSALRFVHYYFNVRG 140 (466)
T ss_pred HhhcCCCCCHHHHHHHHHHHHhCcccccccccCCHHHHHHHHHHHHhCCCCcCEEEEeCCchHHHHHHHHHHHHHHHhcC
Confidence 578999999999999999999873 22 2 267899999999999999988899999999999999999999998
Q ss_pred -cCCCceEEecC
Q psy6206 73 -TNNDDVITQDQ 83 (83)
Q Consensus 73 -~~r~~ii~~~~ 83 (83)
++|++||+|+|
T Consensus 141 ~t~r~~Ii~~~~ 152 (466)
T PRK07036 141 RPAKKHIITRGD 152 (466)
T ss_pred CCCccEEEEEcC
Confidence 45889999875
No 38
>PRK07678 aminotransferase; Validated
Probab=99.89 E-value=3.8e-23 Score=143.18 Aligned_cols=82 Identities=32% Similarity=0.344 Sum_probs=72.7
Q ss_pred CccCCCCCCHHHHHHHHHHHHhhc-cCCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhhc------
Q psy6206 1 MSLPVGHCHPAVVKAACTQLALLN-TNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVHT------ 73 (83)
Q Consensus 1 ~~~~lGh~~p~i~~a~~~~~~~~~-~~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~~------ 73 (83)
|++++||+||+|++|+.+|++++. ....+++++..+|+++|++.+|. .++|+|++|||||||.|||+||.|+
T Consensus 57 ~~~~lGh~~p~v~~ai~~q~~~~~~~~~~~~~~~~~~lae~l~~~~~~-~~~v~f~~sGseA~e~AlklAr~~t~~~g~~ 135 (451)
T PRK07678 57 WCVNVGYGRKELAEAAYEQLKTLSYFPLTQSHEPAIKLAEKLNEWLGG-EYVIFFSNSGSEANETAFKIARQYHAQKGEP 135 (451)
T ss_pred HhhcCCCCCHHHHHHHHHHHHhcCccccccCCHHHHHHHHHHHHhCCC-CCEEEEeCCcHHHHHHHHHHHHHHHHhcCCC
Confidence 578999999999999999999884 33356788999999999999986 4699999999999999999999996
Q ss_pred CCCceEEecC
Q psy6206 74 NNDDVITQDQ 83 (83)
Q Consensus 74 ~r~~ii~~~~ 83 (83)
+|++||+|+|
T Consensus 136 ~r~~ii~~~~ 145 (451)
T PRK07678 136 HRYKFISRYR 145 (451)
T ss_pred CCcEEEEECC
Confidence 6889999875
No 39
>PRK07480 putative aminotransferase; Validated
Probab=99.89 E-value=3.9e-23 Score=143.30 Aligned_cols=83 Identities=33% Similarity=0.409 Sum_probs=73.7
Q ss_pred CccCCCCCCHHHHHHHHHHHHhhc-cC--CCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhh-----
Q psy6206 1 MSLPVGHCHPAVVKAACTQLALLN-TN--NRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVH----- 72 (83)
Q Consensus 1 ~~~~lGh~~p~i~~a~~~~~~~~~-~~--~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~----- 72 (83)
|++++||+||+|++|+.+|++++. .. ..+.+++..+|+++|.+.+|.++++|+|++|||||||+|||+||.|
T Consensus 60 ~~~~lGh~~p~v~~Ai~~q~~~~~~~~~~~~~~~~~~~~lae~L~~~~p~~~~~v~f~~SGseA~e~AlklAr~~~~~~g 139 (456)
T PRK07480 60 WCVNVGYGRKELADAAARQMRELPYYNTFFKTTHPPAIELAAKLAEVAPPGFNHVFFTNSGSEANDTVLRMVRHYWALKG 139 (456)
T ss_pred HHhcCCCCCHHHHHHHHHHHHhcCCcccccccCCHHHHHHHHHHHHhCCCCcCEEEEeCCcHHHHHHHHHHHHHHHHhcC
Confidence 568999999999999999999873 22 2467899999999999999987899999999999999999999998
Q ss_pred -cCCCceEEecC
Q psy6206 73 -TNNDDVITQDQ 83 (83)
Q Consensus 73 -~~r~~ii~~~~ 83 (83)
++|++||+|+|
T Consensus 140 ~~~r~~ii~~~~ 151 (456)
T PRK07480 140 KPQKKVIISRKN 151 (456)
T ss_pred CCCCcEEEEECC
Confidence 56889999875
No 40
>PRK06541 hypothetical protein; Provisional
Probab=99.89 E-value=3.9e-23 Score=143.46 Aligned_cols=83 Identities=30% Similarity=0.397 Sum_probs=74.0
Q ss_pred CccCCCCCCHHHHHHHHHHHHhhc-c-CCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhhc-----
Q psy6206 1 MSLPVGHCHPAVVKAACTQLALLN-T-NNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVHT----- 73 (83)
Q Consensus 1 ~~~~lGh~~p~i~~a~~~~~~~~~-~-~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~~----- 73 (83)
|++++||+||+|++|+.+|++++. . ...+.+++..+|+++|.+++|.++++|+|++|||||||+|||+||.|+
T Consensus 62 ~~~~lGh~~p~v~~Av~~q~~~~~~~~~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseAve~AlklAr~~~~~~g~ 141 (460)
T PRK06541 62 FVVQVGHGRAELAEAAAKQAGTLAFFPLWSYAHPPAIELAERLAALAPGDLNRVFFTTGGSEAVESAWKLAKQYFKLTGK 141 (460)
T ss_pred HhccCCCCCHHHHHHHHHHHhhCcCccccccCCHHHHHHHHHHHHhCCCCcCEEEEcCCcHHHHHHHHHHHHHHHHhcCC
Confidence 578999999999999999999873 2 235778999999999999999878999999999999999999999983
Q ss_pred -CCCceEEecC
Q psy6206 74 -NNDDVITQDQ 83 (83)
Q Consensus 74 -~r~~ii~~~~ 83 (83)
+|++||+|+|
T Consensus 142 ~~r~~ii~~~~ 152 (460)
T PRK06541 142 PGKHKVISRAI 152 (460)
T ss_pred CCccEEEEEcC
Confidence 5889999975
No 41
>PRK08742 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=99.89 E-value=4.9e-23 Score=143.37 Aligned_cols=83 Identities=27% Similarity=0.404 Sum_probs=73.3
Q ss_pred CccCCCCCCHHHHHHHHHHHHhh-ccC-CCCcchHHHHHHHHHHhhCCC-----CCCeEEeeCChHHHHHHHHHHHHhh-
Q psy6206 1 MSLPVGHCHPAVVKAACTQLALL-NTN-NRFLHDNLVLCARKLASLLPD-----PLSVCFFVNSGSEANDLALRLARVH- 72 (83)
Q Consensus 1 ~~~~lGh~~p~i~~a~~~~~~~~-~~~-~~~~~~~~~~la~~l~~~~p~-----~~~~v~f~~sGseA~e~Alk~ar~~- 72 (83)
|++++||+||+|++|+.+|++++ +.. ..+.+++..+|+++|.+.+|. ++++|+|++|||||||+|||+||+|
T Consensus 74 ~~~~lGh~~p~i~~Ai~~q~~~l~~~~~~~~~~~~~~~lae~L~~~~p~~~~~~~~~~v~f~~sGSEAvE~AlKlAr~~~ 153 (472)
T PRK08742 74 WTNLFGHAEPRIGAAIAAQAGELEQVMLAGFTHEPAVQLAEQLLAIAPRQDGRAPLSKVFYADNGSAGVEVALKMAFHYF 153 (472)
T ss_pred HhccCCCCCHHHHHHHHHHHHhCCCccccccCCHHHHHHHHHHHHhCCCcccCCCCCEEEEeCCchHHHHHHHHHHHHHH
Confidence 57899999999999999999987 332 357789999999999999985 4689999999999999999999999
Q ss_pred -----cCCCceEEecC
Q psy6206 73 -----TNNDDVITQDQ 83 (83)
Q Consensus 73 -----~~r~~ii~~~~ 83 (83)
++|++||+|+|
T Consensus 154 ~~~g~~~r~~ii~~~~ 169 (472)
T PRK08742 154 HNRGEHRRTRFIALEN 169 (472)
T ss_pred HhcCCCCCcEEEEECC
Confidence 56889999975
No 42
>PF00202 Aminotran_3: Aminotransferase class-III; InterPro: IPR005814 Aminotransferases share certain mechanistic features with other pyridoxalphosphate-dependent enzymes, such as the covalent binding of the pyridoxalphosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. One of these, called class-III, includes acetylornithine aminotransferase (2.6.1.11 from EC), which catalyzes the transfer of an amino group from acetylornithine to alpha-ketoglutarate, yielding N-acetyl-glutamic-5-semi-aldehyde and glutamic acid; ornithine aminotransferase (2.6.1.13 from EC), which catalyzes the transfer of an amino group from ornithine to alpha-ketoglutarate, yielding glutamic-5-semi-aldehyde and glutamic acid; omega-amino acid--pyruvate aminotransferase (2.6.1.18 from EC), which catalyzes transamination between a variety of omega-amino acids, mono- and diamines, and pyruvate; 4-aminobutyrate aminotransferase (2.6.1.19 from EC) (GABA transaminase), which catalyzes the transfer of an amino group from GABA to alpha-ketoglutarate, yielding succinate semialdehyde and glutamic acid; DAPA aminotransferase (2.6.1.62 from EC), a bacterial enzyme (bioA), which catalyzes an intermediate step in the biosynthesis of biotin, the transamination of 7-keto-8-aminopelargonic acid to form 7,8-diaminopelargonic acid; 2,2-dialkylglycine decarboxylase (4.1.1.64 from EC), a Burkholderia cepacia (Pseudomonas cepacia) enzyme (dgdA) that catalyzes the decarboxylating amino transfer of 2,2-dialkylglycine and pyruvate to dialkyl ketone, alanine and carbon dioxide; glutamate-1-semialdehyde aminotransferase (5.4.3.8 from EC) (GSA); Bacillus subtilis aminotransferases yhxA and yodT; Haemophilus influenzae aminotransferase HI0949; and Caenorhabditis elegans aminotransferase T01B11.2.; GO: 0008483 transaminase activity, 0030170 pyridoxal phosphate binding; PDB: 2JJE_A 2CJH_A 2CIN_A 2JJH_A 2JJF_A 2JJG_A 2CJG_A 2CJD_A 3BS8_A 2YKX_C ....
Probab=99.89 E-value=3.6e-23 Score=138.94 Aligned_cols=83 Identities=39% Similarity=0.542 Sum_probs=74.1
Q ss_pred CccCCCCCCHHHHHHHHHHHHhhc-cC-CCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHH------hh
Q psy6206 1 MSLPVGHCHPAVVKAACTQLALLN-TN-NRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLAR------VH 72 (83)
Q Consensus 1 ~~~~lGh~~p~i~~a~~~~~~~~~-~~-~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar------~~ 72 (83)
|++++||+||+|.+++.+|++++. .. ..+.+++..+|+++|.+.+|.+.++|+|++|||||||+|||+|| ..
T Consensus 26 ~~~~lGh~~p~i~~ai~~~~~~~~~~~~~~~~~~~~~~la~~L~~~~p~~~~~v~f~~sGseAve~Alkla~~~~~~~~~ 105 (339)
T PF00202_consen 26 GSVNLGHNHPEIAEAIAEQANKLNYVSFSGFTHPEAAELAEKLAELFPGGLDRVFFANSGSEAVEAALKLARQYHNKRAY 105 (339)
T ss_dssp HTTTT-BT-HHHHHHHHHHHHHCSSCSTTTSEEHHHHHHHHHHHHHSSTTEEEEEEESSHHHHHHHHHHHHHHHHHHTHH
T ss_pred cceecCCCccccchhHHHHhhhcccccccceeccchhhhhhhhhhccccccceeeeccCchHHHHHHHHHhhcccccccc
Confidence 478999999999999999999983 33 57889999999999999999889999999999999999999999 77
Q ss_pred cCCCceEEecC
Q psy6206 73 TNNDDVITQDQ 83 (83)
Q Consensus 73 ~~r~~ii~~~~ 83 (83)
++|++||+|+|
T Consensus 106 ~~r~~il~~~~ 116 (339)
T PF00202_consen 106 TGRRKILAFEG 116 (339)
T ss_dssp HTTTEEEEETT
T ss_pred cCCceEEEeee
Confidence 89999999975
No 43
>PRK06105 aminotransferase; Provisional
Probab=99.89 E-value=5.8e-23 Score=142.54 Aligned_cols=83 Identities=31% Similarity=0.459 Sum_probs=73.5
Q ss_pred CccCCCCCCHHHHHHHHHHHHhhc-c--CCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhh-----
Q psy6206 1 MSLPVGHCHPAVVKAACTQLALLN-T--NNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVH----- 72 (83)
Q Consensus 1 ~~~~lGh~~p~i~~a~~~~~~~~~-~--~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~----- 72 (83)
|++++||+||+|++|+.+|++++. . .+.+.+++..+|+++|++.+|.++++|+|++|||||||+|||+||++
T Consensus 58 ~~~~lGh~~p~i~~Ai~~q~~~~~~~~~~~~~~~~~~~~lae~L~~~~p~~~~~v~f~~SGseAve~AlKlar~~~~~~g 137 (460)
T PRK06105 58 WSVALGFSEQRLVEAAARQMKKLPFYHTFSHKSHGPVIDLAEKLVAMAPVPMSKVFFTNSGSEANDTVVKLVWYYNNALG 137 (460)
T ss_pred HhccCCCCCHHHHHHHHHHHHhCCCeecccccCCHHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHHHHHHHHhcC
Confidence 578999999999999999999873 2 22467899999999999999987899999999999999999999987
Q ss_pred -cCCCceEEecC
Q psy6206 73 -TNNDDVITQDQ 83 (83)
Q Consensus 73 -~~r~~ii~~~~ 83 (83)
++|++||+|++
T Consensus 138 ~t~r~~il~~~~ 149 (460)
T PRK06105 138 RPEKKKIISRQR 149 (460)
T ss_pred CCCCcEEEEecC
Confidence 46889999875
No 44
>PRK06943 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=99.89 E-value=6.7e-23 Score=142.06 Aligned_cols=83 Identities=23% Similarity=0.331 Sum_probs=73.3
Q ss_pred CccCCCCCCHHHHHHHHHHHHhh-cc-CCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhh------
Q psy6206 1 MSLPVGHCHPAVVKAACTQLALL-NT-NNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVH------ 72 (83)
Q Consensus 1 ~~~~lGh~~p~i~~a~~~~~~~~-~~-~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~------ 72 (83)
|++++||+||+|++++.+|++++ +. ...+.+++..+|+++|++.+|.++++|+|++|||||||+|||+||+|
T Consensus 64 ~~~~lGh~~p~v~~Ai~~ql~~~~~~~~~~~~~~~~~~lAe~L~~~~p~~~~~v~f~~sGseAve~AlKlA~~~~~~rg~ 143 (453)
T PRK06943 64 WVNLFGHANPRINAALKDQLDTLEHAMLAGCTHEPAIELAERLAALTGGTLGHAFFASDGASAVEIALKMSFHAWRNRGR 143 (453)
T ss_pred HHhcCCCCCHHHHHHHHHHHHhcCCccccccCCHHHHHHHHHHHHhCCCCCCEEEEeCCCHHHHHHHHHHHHHHHHHhCC
Confidence 57899999999999999999997 33 23577899999999999999877789999999999999999999876
Q ss_pred cCCCceEEecC
Q psy6206 73 TNNDDVITQDQ 83 (83)
Q Consensus 73 ~~r~~ii~~~~ 83 (83)
++|++||+|++
T Consensus 144 ~~r~~Ii~~~~ 154 (453)
T PRK06943 144 GDKREFVCLAN 154 (453)
T ss_pred CCCCEEEEECC
Confidence 46889999975
No 45
>PRK07046 aminotransferase; Validated
Probab=99.89 E-value=9.6e-23 Score=141.29 Aligned_cols=80 Identities=20% Similarity=0.224 Sum_probs=72.4
Q ss_pred CccCCCCCCHHHHHHHHHHHHhhccCCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhhcCCCceEE
Q psy6206 1 MSLPVGHCHPAVVKAACTQLALLNTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVHTNNDDVIT 80 (83)
Q Consensus 1 ~~~~lGh~~p~i~~a~~~~~~~~~~~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~~~r~~ii~ 80 (83)
|++++||+||+|++++.+|++++.. ..++++...+|+++|++.+| .++|+|++|||||+|.|+|+||.||||++||+
T Consensus 85 g~~~lGh~~p~i~~Av~~q~~~~~~-~~~~~~~~~~lAe~l~~~~~--~~~v~F~nSGtEA~e~AlrlAR~~TGr~~ii~ 161 (453)
T PRK07046 85 TGAMFGHSPAPVARALAEQARRGLT-TMLPSEDAAWVGEELARRFG--LPYWQVATTATDANRFVLRWARAVTGRPKILV 161 (453)
T ss_pred cccccCCCCHHHHHHHHHHHHhCCC-CCCCCHHHHHHHHHHHHHhC--CCEEEEECCHHHHHHHHHHHHHHhhCCCEEEE
Confidence 4788999999999999999998733 34678999999999999884 78999999999999999999999999999999
Q ss_pred ecC
Q psy6206 81 QDQ 83 (83)
Q Consensus 81 ~~~ 83 (83)
|+|
T Consensus 162 ~~g 164 (453)
T PRK07046 162 FNG 164 (453)
T ss_pred ECC
Confidence 875
No 46
>PRK06058 4-aminobutyrate aminotransferase; Provisional
Probab=99.89 E-value=1.1e-22 Score=140.47 Aligned_cols=83 Identities=30% Similarity=0.333 Sum_probs=73.1
Q ss_pred CccCCCCCCHHHHHHHHHHHHhhc-cC-CCCcchHHHHHHHHHHhhCCCC-CCeEEeeCChHHHHHHHHHHHHhhcCCCc
Q psy6206 1 MSLPVGHCHPAVVKAACTQLALLN-TN-NRFLHDNLVLCARKLASLLPDP-LSVCFFVNSGSEANDLALRLARVHTNNDD 77 (83)
Q Consensus 1 ~~~~lGh~~p~i~~a~~~~~~~~~-~~-~~~~~~~~~~la~~l~~~~p~~-~~~v~f~~sGseA~e~Alk~ar~~~~r~~ 77 (83)
|++++||+||+|++++.+|++++. .. ..+++++..+|+++|++.+|.. .++++|++|||||||.|+|+||.++||++
T Consensus 66 ~~~~lGh~~p~v~~ai~~q~~~~~~~~~~~~~~~~~~~la~~l~~~~p~~~~~~v~f~~sGseA~e~AlklAr~~tgr~~ 145 (443)
T PRK06058 66 AVTSVGNSAPRVVEAVREQVARFTHTCFMVTPYEGYVAVAEQLNRLTPGDHEKRSALFNSGAEAVENAVKIARSYTGRQA 145 (443)
T ss_pred hhhccCCCCHHHHHHHHHHHHhccCccccccCCHHHHHHHHHHHHhCCCCCCCEEEEeCCcHHHHHHHHHHHHHhhCCCe
Confidence 578999999999999999999873 22 2356788899999999999854 46999999999999999999999999999
Q ss_pred eEEecC
Q psy6206 78 VITQDQ 83 (83)
Q Consensus 78 ii~~~~ 83 (83)
||+|++
T Consensus 146 ii~~~~ 151 (443)
T PRK06058 146 VVVFDH 151 (443)
T ss_pred EEEECC
Confidence 999875
No 47
>PRK04612 argD acetylornithine transaminase protein; Provisional
Probab=99.89 E-value=1.3e-22 Score=139.11 Aligned_cols=82 Identities=28% Similarity=0.338 Sum_probs=71.5
Q ss_pred CccCCCCCCHHHHHHHHHHHHhh-ccCCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhhc---C--
Q psy6206 1 MSLPVGHCHPAVVKAACTQLALL-NTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVHT---N-- 74 (83)
Q Consensus 1 ~~~~lGh~~p~i~~a~~~~~~~~-~~~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~~---~-- 74 (83)
|++++||+||+|++++.+|++++ +....+.+++..+|+++|++.+|. .++|+|++|||||||.|||+||.|+ |
T Consensus 50 ~~~~lGh~~p~v~~ai~~q~~~~~~~~~~~~~~~~~~la~~L~~~~~~-~~~v~f~~sGseA~e~AlklAr~~~~~~g~~ 128 (408)
T PRK04612 50 AVCGLGHNDPDLVAALTEQAGKLWHTSNVFYSAPPLKLAEELVTASRF-AEKVFLCNSGTEANEAAIKLVRKWASSQGRP 128 (408)
T ss_pred hhccCCCCCHHHHHHHHHHHHhccccccccCCHHHHHHHHHHHhhCCC-CCEEEEcCchHHHHHHHHHHHHHHHHhhCCC
Confidence 57899999999999999999987 333446788999999999999875 4899999999999999999999984 3
Q ss_pred --CCceEEecC
Q psy6206 75 --NDDVITQDQ 83 (83)
Q Consensus 75 --r~~ii~~~~ 83 (83)
|++||+|+|
T Consensus 129 ~~r~~ii~~~~ 139 (408)
T PRK04612 129 ADKRVIVTFRG 139 (408)
T ss_pred CCCcEEEEECC
Confidence 667999875
No 48
>PRK08297 L-lysine aminotransferase; Provisional
Probab=99.88 E-value=1.4e-22 Score=140.05 Aligned_cols=83 Identities=22% Similarity=0.266 Sum_probs=71.9
Q ss_pred CccCCCCCCHHHHH--HHHHHHHhhc--c-C-CCCcchHHHHHHHHHHhhC-CCCCCeEEeeCChHHHHHHHHHHHHhhc
Q psy6206 1 MSLPVGHCHPAVVK--AACTQLALLN--T-N-NRFLHDNLVLCARKLASLL-PDPLSVCFFVNSGSEANDLALRLARVHT 73 (83)
Q Consensus 1 ~~~~lGh~~p~i~~--a~~~~~~~~~--~-~-~~~~~~~~~~la~~l~~~~-p~~~~~v~f~~sGseA~e~Alk~ar~~~ 73 (83)
|++++||+||+|++ ++.+|++++. . . ..+.+++..+|+++|.+.+ |.++++|+|++|||||||.|||+||+|+
T Consensus 55 ~~~~lGh~~p~v~~~~ai~~ql~~l~~~~~~~~~~~~~~~~~la~~l~~~~~p~~~~~v~f~~SGsEAve~AlKlAr~~~ 134 (443)
T PRK08297 55 ASSALGMNHPALADDPEFRAELGRAALNKPSNSDVYTVEMARFVDTFARVLGDPELPHLFFVDGGALAVENALKVAFDWK 134 (443)
T ss_pred hhhcCCCCChHHhhHHHHHHHHHHhhhhccccCCcCCHHHHHHHHHHHhhcCCCCCCEEEEeCchHHHHHHHHHHHHHHh
Confidence 57899999999999 9999998863 1 2 2467889999999999998 6678999999999999999999999883
Q ss_pred -------C-----CCceEEecC
Q psy6206 74 -------N-----NDDVITQDQ 83 (83)
Q Consensus 74 -------~-----r~~ii~~~~ 83 (83)
| |++||+|+|
T Consensus 135 ~~~~~~~g~~~~~r~kii~~~~ 156 (443)
T PRK08297 135 SRKNEARGIDPALGTKVLHLRG 156 (443)
T ss_pred hccccccCCCCCCCceEEEECC
Confidence 3 578999975
No 49
>PRK04013 argD acetylornithine/acetyl-lysine aminotransferase; Provisional
Probab=99.88 E-value=1.8e-22 Score=136.81 Aligned_cols=81 Identities=27% Similarity=0.365 Sum_probs=73.2
Q ss_pred CccCCCCCCHHHHHHHHHHHHhh-ccCCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhhcCCCceE
Q psy6206 1 MSLPVGHCHPAVVKAACTQLALL-NTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVHTNNDDVI 79 (83)
Q Consensus 1 ~~~~lGh~~p~i~~a~~~~~~~~-~~~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~~~r~~ii 79 (83)
|+.++||+||+|++++.+|++++ +....+++++..+|+++|++.+ +.++++|++|||||+|.|+|+||.++||++||
T Consensus 34 ~~~~lGh~~p~v~~ai~~ql~~~~~~~~~~~~~~~~~la~~l~~~~--~~~~v~~~~SGseA~e~Alklar~~~gr~~Ii 111 (364)
T PRK04013 34 GVNVLGHNHPEWVEEMSEQLEKLVVAGPMFEHEEKEEMLEELSKWV--NYEYVYMGNSGTEAVEAALKFARLYTGRKEII 111 (364)
T ss_pred hhccCCCCCHHHHHHHHHHHHhcCCccCCcCCHHHHHHHHHHHhhc--CCCEEEEeCchHHHHHHHHHHHHHHhCCCEEE
Confidence 57899999999999999999997 4444678899999999999988 46799999999999999999999999999999
Q ss_pred EecC
Q psy6206 80 TQDQ 83 (83)
Q Consensus 80 ~~~~ 83 (83)
+|++
T Consensus 112 ~~~~ 115 (364)
T PRK04013 112 AMTN 115 (364)
T ss_pred EECC
Confidence 9874
No 50
>PRK06931 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional
Probab=99.88 E-value=2.1e-22 Score=139.80 Aligned_cols=83 Identities=27% Similarity=0.285 Sum_probs=71.3
Q ss_pred CccCCCCCCHHHHHHHHHHHHhh-cc-CCCCcchHHHHHHHHHHhhCCCCC---CeEEeeCChHHHHHHHHHHHHhhcCC
Q psy6206 1 MSLPVGHCHPAVVKAACTQLALL-NT-NNRFLHDNLVLCARKLASLLPDPL---SVCFFVNSGSEANDLALRLARVHTNN 75 (83)
Q Consensus 1 ~~~~lGh~~p~i~~a~~~~~~~~-~~-~~~~~~~~~~~la~~l~~~~p~~~---~~v~f~~sGseA~e~Alk~ar~~~~r 75 (83)
|++++||+||+|++++.+|+++. +. ...++++...+|+++|++.+|+.. ..+||++|||||||.|||+||.|+||
T Consensus 68 ~~~~lGH~~p~v~~Ai~~q~~~~~~~~~~~~~~~~~~~lAe~L~~~~p~~~~~~~~~f~~~SGsEAve~AlklAr~~tgr 147 (459)
T PRK06931 68 GTLALGHNHPDVLQSIQDVLTSGLPLHTLDLTTPLKDAFSEYLLSLLPGQGKEYCLQFTGPSGADAVEAAIKLAKTYTGR 147 (459)
T ss_pred hhccCCCCCHHHHHHHHHHHhhhccccccccCCHHHHHHHHHHHHhCCCccccceEEEeCCCcHHHHHHHHHHHHHhcCC
Confidence 57899999999999999999874 33 234678889999999999998543 35677899999999999999999999
Q ss_pred CceEEecC
Q psy6206 76 DDVITQDQ 83 (83)
Q Consensus 76 ~~ii~~~~ 83 (83)
++||+|+|
T Consensus 148 ~~Ii~~~~ 155 (459)
T PRK06931 148 SNVISFSG 155 (459)
T ss_pred CeEEEECC
Confidence 99999975
No 51
>PRK09264 diaminobutyrate--2-oxoglutarate aminotransferase; Validated
Probab=99.88 E-value=2.7e-22 Score=137.95 Aligned_cols=83 Identities=22% Similarity=0.226 Sum_probs=70.0
Q ss_pred CccCCCCCCHHHHHHHHHHHHhh-cc-CCCCcchHHHHHHHHHHhhC--CCCCC-eEEe-eCChHHHHHHHHHHHHhhcC
Q psy6206 1 MSLPVGHCHPAVVKAACTQLALL-NT-NNRFLHDNLVLCARKLASLL--PDPLS-VCFF-VNSGSEANDLALRLARVHTN 74 (83)
Q Consensus 1 ~~~~lGh~~p~i~~a~~~~~~~~-~~-~~~~~~~~~~~la~~l~~~~--p~~~~-~v~f-~~sGseA~e~Alk~ar~~~~ 74 (83)
|++++||+||+|++++.+|++++ +. ...+.+++..+|+++|.+.+ |.+.+ +++| ++|||||||.|||+||.|+|
T Consensus 49 ~~~~lGh~~p~v~~ai~~ql~~~~~~~~~~~~~~~~~~lae~l~~~~~~~~~~~~~~~f~~~sGseA~e~AlklAr~~tg 128 (425)
T PRK09264 49 GALNYGHNNPVLKQALIDYLQRDGITHGLDMHTTAKREFLETFEETILKPRGLDYKVQFTGPTGTNAVEAALKLARKVTG 128 (425)
T ss_pred hhccCCCCCHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHhhcCCcCCCceEEEeCCCHHHHHHHHHHHHHHhcC
Confidence 57899999999999999999975 32 23456788999999999975 43454 6766 58999999999999999999
Q ss_pred CCceEEecC
Q psy6206 75 NDDVITQDQ 83 (83)
Q Consensus 75 r~~ii~~~~ 83 (83)
|++||+|+|
T Consensus 129 r~~ii~~~~ 137 (425)
T PRK09264 129 RTNIVAFTN 137 (425)
T ss_pred CCeEEEECC
Confidence 999999875
No 52
>PRK06938 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional
Probab=99.88 E-value=2.9e-22 Score=139.26 Aligned_cols=83 Identities=24% Similarity=0.314 Sum_probs=71.7
Q ss_pred CccCCCCCCHHHHHHHHHHHHhh-cc-CCCCcchHHHHHHHHHHhhCCCCC---CeEEee-CChHHHHHHHHHHHHhhcC
Q psy6206 1 MSLPVGHCHPAVVKAACTQLALL-NT-NNRFLHDNLVLCARKLASLLPDPL---SVCFFV-NSGSEANDLALRLARVHTN 74 (83)
Q Consensus 1 ~~~~lGh~~p~i~~a~~~~~~~~-~~-~~~~~~~~~~~la~~l~~~~p~~~---~~v~f~-~sGseA~e~Alk~ar~~~~ 74 (83)
|++++||+||+|++++.+|+++. +. ...+.++...+|+++|.+.+|.++ ++++|+ +|||||||.|||+||.++|
T Consensus 73 ~~~~lGh~~p~v~~Ai~~ql~~~~~~~~~~~~~~~~~~la~~L~~~~p~~~~~~~~v~f~~~SGSEAve~AlklAr~~tg 152 (464)
T PRK06938 73 GTLALGHNHPVVIEAIQQVLADELPLHTLDLTTPVKDQFVQDLFASLPEAFAREAKIQFCGPTGTDAVEAALKLVKTATG 152 (464)
T ss_pred cccccCCCCHHHHHHHHHHHHhhhcccccccCCHHHHHHHHHHHHhCcccccccceEEEeCCCcHHHHHHHHHHHHHhhC
Confidence 57899999999999999999754 33 235678999999999999998654 378676 8999999999999999999
Q ss_pred CCceEEecC
Q psy6206 75 NDDVITQDQ 83 (83)
Q Consensus 75 r~~ii~~~~ 83 (83)
|++||+|+|
T Consensus 153 r~~ii~~~~ 161 (464)
T PRK06938 153 RSTVLSFQG 161 (464)
T ss_pred CCeEEEECC
Confidence 999999875
No 53
>PLN00144 acetylornithine transaminase
Probab=99.88 E-value=2.5e-22 Score=136.60 Aligned_cols=81 Identities=28% Similarity=0.356 Sum_probs=70.6
Q ss_pred CccCCCCCCHHHHHHHHHHHHhhc-cCCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhhcC-----
Q psy6206 1 MSLPVGHCHPAVVKAACTQLALLN-TNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVHTN----- 74 (83)
Q Consensus 1 ~~~~lGh~~p~i~~a~~~~~~~~~-~~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~~~----- 74 (83)
|++++||+||+|++++.+|++++. ....+.+++..+|+++|++..| .++|+|++|||||||.|+|+||.|++
T Consensus 25 ~~~~lGh~~p~v~~ai~~q~~~~~~~~~~~~~~~~~~la~~l~~~~~--~~~v~f~~sGseA~e~AlklAr~~~~~~~~~ 102 (382)
T PLN00144 25 AVNALGHGDPDWVKAVAEQAGTLAHVSNVYHTIPQVELAKRLVASSF--ADRVFFCNSGTEANEAAIKFARKYQRVRAPD 102 (382)
T ss_pred HhccCCCCCHHHHHHHHHHHHhcCCccccccCHHHHHHHHHHHhcCC--CCeEEEeCCcHHHHHHHHHHHHHHHhccCCC
Confidence 478999999999999999999873 3334568889999999999875 56999999999999999999999986
Q ss_pred --------CCceEEecC
Q psy6206 75 --------NDDVITQDQ 83 (83)
Q Consensus 75 --------r~~ii~~~~ 83 (83)
|++||+|++
T Consensus 103 ~~~~~~~~r~~ii~~~~ 119 (382)
T PLN00144 103 KKDPAASSATEFVSFSN 119 (382)
T ss_pred CccccccccceEEEECC
Confidence 568999875
No 54
>PRK06209 glutamate-1-semialdehyde 2,1-aminomutase; Provisional
Probab=99.88 E-value=3.5e-22 Score=137.64 Aligned_cols=79 Identities=27% Similarity=0.245 Sum_probs=69.8
Q ss_pred CccCCCCCCHHHHHHHHHHHHhhccCCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhhcCCCceEE
Q psy6206 1 MSLPVGHCHPAVVKAACTQLALLNTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVHTNNDDVIT 80 (83)
Q Consensus 1 ~~~~lGh~~p~i~~a~~~~~~~~~~~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~~~r~~ii~ 80 (83)
|++++||+||+|++|+.+|++++.. ...+++...+|+++|.+++|. .++|+|++|||||||+|+|+||.|+||++|++
T Consensus 58 ~~~~lGh~~p~v~~Ai~~q~~~~~~-~~~~~~~~~~la~~l~~~~p~-~~~v~f~~sGseA~e~AlklAr~~tgr~~i~~ 135 (431)
T PRK06209 58 RAVGLGHAYPPVVEAVREALQDGCN-FTRPSAIELDAAESFLELIDG-ADMVKFCKNGSDATSAAVRLARAYTGRDLVAR 135 (431)
T ss_pred cchhcCCCCHHHHHHHHHHHHhCcC-CCCCCHHHHHHHHHHHHhCCc-cceEEEecCHHHHHHHHHHHHHHHhCCCeEEE
Confidence 5789999999999999999998743 234556667899999999985 67999999999999999999999999999998
Q ss_pred e
Q psy6206 81 Q 81 (83)
Q Consensus 81 ~ 81 (83)
|
T Consensus 136 ~ 136 (431)
T PRK06209 136 C 136 (431)
T ss_pred e
Confidence 7
No 55
>TIGR03251 LAT_fam L-lysine 6-transaminase. Characterized members of this protein family are L-lysine 6-transaminase, also called lysine epsilon-aminotransferase (LAT). The immediate product of the reaction of this enzyme on lysine, 2-aminoadipate 6-semialdehyde, becomes 1-piperideine 6-carboxylate, or P6C. This product may be converted subsequently to pipecolate or alpha-aminoadipate, lysine catabolites that may be precursors of certain seconary metabolites.
Probab=99.87 E-value=4.6e-22 Score=137.07 Aligned_cols=83 Identities=25% Similarity=0.316 Sum_probs=71.1
Q ss_pred CccCCCCCCHHHH--HHHHHHHHhhc----cCCCCcchHHHHHHHHHHhhC-CCCCCeEEeeCChHHHHHHHHHHHHhhc
Q psy6206 1 MSLPVGHCHPAVV--KAACTQLALLN----TNNRFLHDNLVLCARKLASLL-PDPLSVCFFVNSGSEANDLALRLARVHT 73 (83)
Q Consensus 1 ~~~~lGh~~p~i~--~a~~~~~~~~~----~~~~~~~~~~~~la~~l~~~~-p~~~~~v~f~~sGseA~e~Alk~ar~~~ 73 (83)
|++++||+||+|+ +|+.+|++++. ....+.+++..+++++|.+.+ |.++++|+|++|||||||+|||+||+|+
T Consensus 48 ~~~~lGh~~p~v~~~~ai~~q~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~f~~sGsEAve~AlklAr~~t 127 (431)
T TIGR03251 48 ASMALGMNHPALVDDLAFRARLGAAAVNKPSNSDVYTVAMARFVDTFARVLGDPALPHLFFIEGGALAVENALKTAFDWK 127 (431)
T ss_pred hhcCCCCCChhhhHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHhcCCCCcCEEEEeCCcHHHHHHHHHHHHHHh
Confidence 5789999999999 99999999862 122466788899999999987 5678999999999999999999999996
Q ss_pred C------------CCceEEecC
Q psy6206 74 N------------NDDVITQDQ 83 (83)
Q Consensus 74 ~------------r~~ii~~~~ 83 (83)
+ |++||+|+|
T Consensus 128 ~~~~~~~g~~~~~~~~ii~~~~ 149 (431)
T TIGR03251 128 SRHNQARGIPAALGTQVLHLRQ 149 (431)
T ss_pred hcchhhcCCCCCCCceEEEECC
Confidence 3 468999975
No 56
>TIGR00699 GABAtrns_euk 4-aminobutyrate aminotransferase, eukaryotic type. Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.
Probab=99.87 E-value=4.6e-22 Score=138.27 Aligned_cols=73 Identities=27% Similarity=0.267 Sum_probs=60.5
Q ss_pred CccCCCCCCHHHHHHHHHH--HHhhccCCCCcchHHHHHHHHHH----hhCCCCCCeEEeeCChHHHHHHHHHHHHhhc
Q psy6206 1 MSLPVGHCHPAVVKAACTQ--LALLNTNNRFLHDNLVLCARKLA----SLLPDPLSVCFFVNSGSEANDLALRLARVHT 73 (83)
Q Consensus 1 ~~~~lGh~~p~i~~a~~~~--~~~~~~~~~~~~~~~~~la~~l~----~~~p~~~~~v~f~~sGseA~e~Alk~ar~~~ 73 (83)
|++++||+||+|++|+.+| ...+.....+.+++..+++++|. +++|.++++|+|++|||||||+|||+||.|+
T Consensus 68 ~~~~lGh~~p~i~~Ai~~q~~~~~l~~~~~~~~~~~~~la~~l~~~l~~~~p~~~~~v~f~~SGsEAvE~AlKlAr~~~ 146 (464)
T TIGR00699 68 SSIPIGYNNPALLKAAQSPEMATTLINRPALGNFPSKDWAKILKEGILKVAPKGQDQVWTGMSGSDANELAFKAAFMYY 146 (464)
T ss_pred hhhcCCCCCHHHHHHHHHHHHHHhhcccccCCcHHHHHHHHHHHHhHHhhCCCCcCEEEEeCCcHHHHHHHHHHHHHHH
Confidence 5789999999999999985 44443223467788888999975 4788778999999999999999999999884
No 57
>COG0001 HemL Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism]
Probab=99.87 E-value=7e-22 Score=135.32 Aligned_cols=81 Identities=37% Similarity=0.381 Sum_probs=74.2
Q ss_pred CccCCCCCCHHHHHHHHHHHHhhccCCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhhcCCCceEE
Q psy6206 1 MSLPVGHCHPAVVKAACTQLALLNTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVHTNNDDVIT 80 (83)
Q Consensus 1 ~~~~lGh~~p~i~~a~~~~~~~~~~~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~~~r~~ii~ 80 (83)
+.+.+||+||.|++|+.+|+++... .+.|++...++++.|++..|. .++|.|+||||||+..|||+||.||||++||.
T Consensus 63 Gp~ilGH~~p~V~~Av~~~l~~G~~-fg~Pte~Ei~~Aell~~~~p~-~e~vrfvnSGTEAtmsAiRlARa~TgR~kIik 140 (432)
T COG0001 63 GPLILGHAHPAVVEAVQEQLERGLS-FGAPTELEVELAELLIERVPS-IEKVRFVNSGTEATMSAIRLARAYTGRDKIIK 140 (432)
T ss_pred cccccCCCCHHHHHHHHHHHHhcCC-CCCCCHHHHHHHHHHHHhcCc-ccEEEEecchhHHHHHHHHHHHHhhCCCeEEE
Confidence 3578999999999999999999732 356899999999999999986 78999999999999999999999999999999
Q ss_pred ecC
Q psy6206 81 QDQ 83 (83)
Q Consensus 81 ~~~ 83 (83)
|+|
T Consensus 141 F~G 143 (432)
T COG0001 141 FEG 143 (432)
T ss_pred EcC
Confidence 987
No 58
>TIGR02407 ectoine_ectB diaminobutyrate--2-oxoglutarate aminotransferase. Members of this family of class III pyridoxal-phosphate-dependent aminotransferases are diaminobutyrate--2-oxoglutarate aminotransferase (EC 2.6.1.76) that catalyze the first step in ectoine biosynthesis from L-aspartate beta-semialdehyde. This family is readily separated phylogenetically from enzymes with the same substrate and product but involved in other process such as siderophore or 1,3-diaminopropane biosynthesis. The family TIGR00709 previously included both groups but has now been revised to exclude the ectoine biosynthesis proteins of this family. Ectoine is a compatible solute particularly effective in conferring salt tolerance.
Probab=99.87 E-value=6.8e-22 Score=135.57 Aligned_cols=83 Identities=23% Similarity=0.250 Sum_probs=69.5
Q ss_pred CccCCCCCCHHHHHHHHHHHHhh-ccC-CCCcchHHHHHHHHHHhhC--CCCCC-eEEe-eCChHHHHHHHHHHHHhhcC
Q psy6206 1 MSLPVGHCHPAVVKAACTQLALL-NTN-NRFLHDNLVLCARKLASLL--PDPLS-VCFF-VNSGSEANDLALRLARVHTN 74 (83)
Q Consensus 1 ~~~~lGh~~p~i~~a~~~~~~~~-~~~-~~~~~~~~~~la~~l~~~~--p~~~~-~v~f-~~sGseA~e~Alk~ar~~~~ 74 (83)
|++++||+||+|++|+.+|+++. +.. ..+.+++..+|+++|.+.+ |.+.. +++| ++|||||||.|+|+||.++|
T Consensus 45 ~~~~lGh~~p~v~~ai~~ql~~~~~~~~~~~~~~~~~~lae~l~~~~~~~~~~~~~~~f~~~sGseA~e~AlklAr~~tg 124 (412)
T TIGR02407 45 GALNYGHNNPKLKQALIDYLADDGIIHSLDMATEAKREFLETFNEIILKPRGLDYKVQFPGPTGTNAVESALKLARKVTG 124 (412)
T ss_pred hhccCCCCCHHHHHHHHHHHhhccceeccccCcHHHHHHHHHHHHhccCccCCCceEEEeCCCchHHHHHHHHHHhhhcC
Confidence 57899999999999999999875 322 3456888999999999985 43343 6655 59999999999999999999
Q ss_pred CCceEEecC
Q psy6206 75 NDDVITQDQ 83 (83)
Q Consensus 75 r~~ii~~~~ 83 (83)
|++||+|+|
T Consensus 125 r~~ii~~~~ 133 (412)
T TIGR02407 125 RSNVVSFTN 133 (412)
T ss_pred CCeEEEECC
Confidence 999999875
No 59
>PRK06149 hypothetical protein; Provisional
Probab=99.87 E-value=1.2e-21 Score=145.21 Aligned_cols=81 Identities=46% Similarity=0.644 Sum_probs=74.1
Q ss_pred cCCCCCCHHHHHHHHHHHHhhccCCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhhcCCCceEEec
Q psy6206 3 LPVGHCHPAVVKAACTQLALLNTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVHTNNDDVITQD 82 (83)
Q Consensus 3 ~~lGh~~p~i~~a~~~~~~~~~~~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~~~r~~ii~~~ 82 (83)
.++||+||+|++|+.+|++++.+.+.+.++...+|+++|++.+|.+.++|+|++|||||||.|||+||.++||++||+|+
T Consensus 595 ~~lGh~hp~v~~Ai~~q~~~l~~~~~~~~~~~~elae~L~~~~p~~~~~v~f~~SGsEA~e~AlklAr~~tgr~~ii~~~ 674 (972)
T PRK06149 595 TVLGHGHPRLAAAAARQWSLLNTNSRFHYAAVAEFSERLAALAPDGLDTVFLVNSGSEANDLAIRLAWAASGRRDVVSVL 674 (972)
T ss_pred cccCCCCHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHhCCCCcCEEEEeCCchHHHHHHHHHHHHhcCCCeEEEEe
Confidence 47999999999999999998854445677889999999999999888999999999999999999999999999999997
Q ss_pred C
Q psy6206 83 Q 83 (83)
Q Consensus 83 ~ 83 (83)
+
T Consensus 675 ~ 675 (972)
T PRK06149 675 E 675 (972)
T ss_pred C
Confidence 5
No 60
>PLN02760 4-aminobutyrate:pyruvate transaminase
Probab=99.86 E-value=1.6e-21 Score=136.65 Aligned_cols=83 Identities=28% Similarity=0.375 Sum_probs=71.5
Q ss_pred CccCCCCCCHHHHHHHHHHHHhhcc-CC--CCcchHHHHHHHHHHhhC-CCCCCeEEeeCChHHHHHHHHHHHHhhc---
Q psy6206 1 MSLPVGHCHPAVVKAACTQLALLNT-NN--RFLHDNLVLCARKLASLL-PDPLSVCFFVNSGSEANDLALRLARVHT--- 73 (83)
Q Consensus 1 ~~~~lGh~~p~i~~a~~~~~~~~~~-~~--~~~~~~~~~la~~l~~~~-p~~~~~v~f~~sGseA~e~Alk~ar~~~--- 73 (83)
|+.++||+||+|++|+.+|++++.. .. .+++++..+|+++|.+.+ |.++++|+|++|||||||.|||+||.|+
T Consensus 99 ~~~~lGh~hp~v~~Av~~ql~~~~~~~~~~~~~~~~~~~lae~L~~~~~~~~~~~v~f~~SGsEA~e~AlKlAr~~~~~~ 178 (504)
T PLN02760 99 WCTALGGSEPRLVAAATEQLNKLPFYHSFWNRTTKPSLDLAKELLEMFTARKMGKVFFTNSGSEANDTQVKLVWYYNNAL 178 (504)
T ss_pred HhcccCCCCHHHHHHHHHHHhhccceecccccCcHHHHHHHHHHHhhcCCCCCCEEEEeCChHHHHHHHHHHHHHHHHhc
Confidence 5789999999999999999998732 22 357889999999999985 5567899999999999999999999873
Q ss_pred ---CCCceEEecC
Q psy6206 74 ---NNDDVITQDQ 83 (83)
Q Consensus 74 ---~r~~ii~~~~ 83 (83)
+|++||+|++
T Consensus 179 g~~~r~~iI~~~~ 191 (504)
T PLN02760 179 GRPNKKKFIARSK 191 (504)
T ss_pred CCCCCcEEEEECC
Confidence 5789999975
No 61
>PRK12403 putative aminotransferase; Provisional
Probab=99.86 E-value=3.2e-21 Score=133.87 Aligned_cols=83 Identities=28% Similarity=0.291 Sum_probs=70.4
Q ss_pred CccCCCCCCHHHHHHHHHHHHhhcc-CC--CCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhhc---C
Q psy6206 1 MSLPVGHCHPAVVKAACTQLALLNT-NN--RFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVHT---N 74 (83)
Q Consensus 1 ~~~~lGh~~p~i~~a~~~~~~~~~~-~~--~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~~---~ 74 (83)
|+.++||+||+|++|+.+|++++.. .. ...+++..+|+++|++.+|.++++|+|++|||||||+|||+||+|+ |
T Consensus 64 ~~~~lGh~hp~v~~A~~~q~~~~~~~~~~~~~~~~~~~~lae~L~~~~p~~~~~v~f~~SGseA~e~AiklAr~~~~~~g 143 (460)
T PRK12403 64 WCTNLGYGRKDLAAAAARQMEQLPYYNMFFHTTHPAVIELSELLFSLLPGHYSHAIYTNSGSEANEVLIRTVRRYWQVLG 143 (460)
T ss_pred HhhcCCCCCHHHHHHHHHHHHhCCCeecccccCCHHHHHHHHHHHHhCCCCcCEEEEeCCcHHHHHHHHHHHHHHHHhhC
Confidence 5688999999999999999999742 22 3467889999999999999777899999999999999999999983 4
Q ss_pred ---CCceEEecC
Q psy6206 75 ---NDDVITQDQ 83 (83)
Q Consensus 75 ---r~~ii~~~~ 83 (83)
|..||+|.+
T Consensus 144 ~~~r~~ii~~~~ 155 (460)
T PRK12403 144 KPQKKIMIGRWN 155 (460)
T ss_pred CCCCcEEEEECC
Confidence 456777754
No 62
>TIGR00508 bioA adenosylmethionine-8-amino-7-oxononanoate transaminase. All members of the seed alignment have been demonstrated experimentally to act as EC 2.6.1.62, an enzyme in the biotin biosynthetic pathway. Alternate names include 7,8-diaminopelargonic acid aminotransferase, DAPA aminotransferase, and adenosylmethionine-8-amino-7-oxononanoate aminotransferase. The gene symbol is bioA in E. coli and BIO3 in S. cerevisiae.
Probab=99.85 E-value=4.1e-21 Score=132.28 Aligned_cols=83 Identities=27% Similarity=0.355 Sum_probs=73.6
Q ss_pred CccCCCCCCHHHHHHHHHHHHhhc-c-CCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhhc-----
Q psy6206 1 MSLPVGHCHPAVVKAACTQLALLN-T-NNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVHT----- 73 (83)
Q Consensus 1 ~~~~lGh~~p~i~~a~~~~~~~~~-~-~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~~----- 73 (83)
|++++||+||+|++++.+|++++. . ...++++...+++++|.+.+|.++++|+|++|||||+|.|+|+||.|+
T Consensus 55 ~~~~lGh~~p~v~~ai~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~f~~sGseA~e~AlklAr~~~~~~~~ 134 (427)
T TIGR00508 55 WAAIHGYNHPRLNAAAQKQIDKMSHVMFGGFTHKPAIELCQKLVKMTPNALDCVFLADSGSVAVEVALKMALQYWQAKGE 134 (427)
T ss_pred HHhcCCCCCHHHHHHHHHHHHhcCCccccccCCHHHHHHHHHHHhhCCCCCCEEEEeCCcHHHHHHHHHHHHHHHHhhCC
Confidence 467999999999999999999873 2 234678899999999999999888999999999999999999999985
Q ss_pred -CCCceEEecC
Q psy6206 74 -NNDDVITQDQ 83 (83)
Q Consensus 74 -~r~~ii~~~~ 83 (83)
+|++||+|++
T Consensus 135 ~~r~~il~~~~ 145 (427)
T TIGR00508 135 KNRQKFLTIRS 145 (427)
T ss_pred CCccEEEEEcC
Confidence 5889999975
No 63
>KOG1401|consensus
Probab=99.84 E-value=1.4e-20 Score=127.71 Aligned_cols=83 Identities=30% Similarity=0.440 Sum_probs=72.8
Q ss_pred CccCCCCCCHHHHHHHHHHHHhh-ccCCCCcchHHHHHHHHHHhhCC-CCCCeEEeeCChHHHHHHHHHHHHhhcCCCc-
Q psy6206 1 MSLPVGHCHPAVVKAACTQLALL-NTNNRFLHDNLVLCARKLASLLP-DPLSVCFFVNSGSEANDLALRLARVHTNNDD- 77 (83)
Q Consensus 1 ~~~~lGh~~p~i~~a~~~~~~~~-~~~~~~~~~~~~~la~~l~~~~p-~~~~~v~f~~sGseA~e~Alk~ar~~~~r~~- 77 (83)
|+..+||+||++.+++.+|+.++ |..+.+.+.+..+|+++|.+.+. ...++|||+||||||||.|||+||+++++++
T Consensus 66 ~~~~~Ghanpev~ral~~q~~k~~hs~~~~~t~eav~l~~~l~~~~~~~~~~rvff~nsGTeAne~ALK~Ark~~~~~~~ 145 (433)
T KOG1401|consen 66 AVTILGHANPEVARALAEQAKKLGHSSNGYFTLEAVELEEVLSAVLGKGSAERVFFCNSGTEANETALKFARKFTGKKHP 145 (433)
T ss_pred eccccCCCCHHHHHHHHHHHhhheeccCccccHHHHHHHHHHHhcccCCCccEEEEecCCcHHHHHHHHHHHHhhcccCC
Confidence 68899999999999999999999 66666666669999999998874 3478999999999999999999999987655
Q ss_pred -----eEEecC
Q psy6206 78 -----VITQDQ 83 (83)
Q Consensus 78 -----ii~~~~ 83 (83)
||+|+|
T Consensus 146 ~~~t~~Iaf~n 156 (433)
T KOG1401|consen 146 EKKTKFIAFEN 156 (433)
T ss_pred ccceeEEEEec
Confidence 999986
No 64
>PRK12381 bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional
Probab=99.84 E-value=1.9e-20 Score=127.95 Aligned_cols=81 Identities=31% Similarity=0.453 Sum_probs=70.9
Q ss_pred CccCCCCCCHHHHHHHHHHHHhh-ccCCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhhc------
Q psy6206 1 MSLPVGHCHPAVVKAACTQLALL-NTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVHT------ 73 (83)
Q Consensus 1 ~~~~lGh~~p~i~~a~~~~~~~~-~~~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~~------ 73 (83)
|+.++||+||+|++|+.+|++++ +....+.+++..+|+++|++..| .++|+|++||+||||.|+|+||.++
T Consensus 49 ~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~--~~~v~~~~sGseA~e~Alk~ar~~~~~~~~~ 126 (406)
T PRK12381 49 AVNALGHAHPALREALNEQASKFWHTGNGYTNEPVLRLAKKLIDATF--ADRVFFCNSGAEANEAALKLARKYAHDRYGS 126 (406)
T ss_pred hhccCCCCCHHHHHHHHHHHhhcccccCccCCHHHHHHHHHHHhhCC--CCeEEEcCCcHHHHHHHHHHHHHHHhhcCCC
Confidence 46799999999999999999986 44445667888999999999875 4699999999999999999999995
Q ss_pred CCCceEEecC
Q psy6206 74 NNDDVITQDQ 83 (83)
Q Consensus 74 ~r~~ii~~~~ 83 (83)
+|++||+|++
T Consensus 127 ~r~~ii~~~~ 136 (406)
T PRK12381 127 HKSGIVAFKN 136 (406)
T ss_pred CCCeEEEECC
Confidence 7889999875
No 65
>TIGR03246 arg_catab_astC succinylornithine transaminase family. Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason.
Probab=99.84 E-value=2.2e-20 Score=127.33 Aligned_cols=81 Identities=32% Similarity=0.484 Sum_probs=70.9
Q ss_pred CccCCCCCCHHHHHHHHHHHHhh-ccCCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhhc------
Q psy6206 1 MSLPVGHCHPAVVKAACTQLALL-NTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVHT------ 73 (83)
Q Consensus 1 ~~~~lGh~~p~i~~a~~~~~~~~-~~~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~~------ 73 (83)
|+.++||+||+|++++.+|++++ +....+.+++..+|+++|++..| .++++|++||+||||.|||+||.|+
T Consensus 45 ~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~L~~~~~--~~~~~f~~SGseA~e~Alk~ar~~~~~~~~~ 122 (397)
T TIGR03246 45 AVNALGHAHPELVKALIEQADKLWHIGNGYTNEPVLRLAKKLVDATF--ADKVFFCNSGAEANEAALKLARRYALDKHGA 122 (397)
T ss_pred hhccCCCCCHHHHHHHHHHHHhcccccCccCCHHHHHHHHHHHhhCC--CCEEEEeCCcHHHHHHHHHHHHHHHHhcCCC
Confidence 46899999999999999999986 33445678888999999999885 3699999999999999999999995
Q ss_pred CCCceEEecC
Q psy6206 74 NNDDVITQDQ 83 (83)
Q Consensus 74 ~r~~ii~~~~ 83 (83)
+|++||++++
T Consensus 123 ~r~~ii~~~~ 132 (397)
T TIGR03246 123 DKSEIVAFKN 132 (397)
T ss_pred CCCEEEEECC
Confidence 7889999874
No 66
>PLN02974 adenosylmethionine-8-amino-7-oxononanoate transaminase
Probab=99.84 E-value=1.4e-20 Score=137.39 Aligned_cols=83 Identities=19% Similarity=0.176 Sum_probs=70.6
Q ss_pred CccCCC-CCCHHHHHHHHHHHHhh-ccC-CCCcchHHHHHHHHHHhhCCCC-CCeEEeeCChHHHHHHHHHHHHh-hc--
Q psy6206 1 MSLPVG-HCHPAVVKAACTQLALL-NTN-NRFLHDNLVLCARKLASLLPDP-LSVCFFVNSGSEANDLALRLARV-HT-- 73 (83)
Q Consensus 1 ~~~~lG-h~~p~i~~a~~~~~~~~-~~~-~~~~~~~~~~la~~l~~~~p~~-~~~v~f~~sGseA~e~Alk~ar~-~~-- 73 (83)
|+.++| |+||+|++|+.+|++++ +.. ..+.+++..+|+++|.+..|.+ +++|||++|||||||.||||||+ |+
T Consensus 375 w~~~lG~h~~p~I~~Ai~~Qa~rl~hv~~~~~~hepa~~LAe~L~~~~~~~~l~rVffs~sGSeAvE~AlKmA~r~y~~~ 454 (817)
T PLN02974 375 WTQGPDPTLQPELARAVAYAAGRYGHVMFPENVHEPALRAAELLLGGPGKGWASRVFFSDNGSTAIEVALKMAFRKFIVD 454 (817)
T ss_pred HHhCCCcCCCHHHHHHHHHHHhhCCccccCccCCHHHHHHHHHHHhccCCCCCCEEEECCchHHHHHHHHHHHHHHHHHh
Confidence 678999 68999999999999998 433 3568899999999999965533 78999999999999999999964 52
Q ss_pred ----------------CCCceEEecC
Q psy6206 74 ----------------NNDDVITQDQ 83 (83)
Q Consensus 74 ----------------~r~~ii~~~~ 83 (83)
+|.+||+|+|
T Consensus 455 ~G~~~~~~~~~~~~~~~r~kIIa~~g 480 (817)
T PLN02974 455 HGFLENSGNEKRGGDLIELKVLALDG 480 (817)
T ss_pred cCCCcccccccccccCCCCEEEEECC
Confidence 4788999986
No 67
>PRK04073 rocD ornithine--oxo-acid transaminase; Provisional
Probab=99.83 E-value=3.5e-20 Score=126.12 Aligned_cols=81 Identities=27% Similarity=0.375 Sum_probs=70.3
Q ss_pred CccCCCCCCHHHHHHHHHHHHhhc-cCCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhh-------
Q psy6206 1 MSLPVGHCHPAVVKAACTQLALLN-TNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVH------- 72 (83)
Q Consensus 1 ~~~~lGh~~p~i~~a~~~~~~~~~-~~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~------- 72 (83)
|++++||+||+|++++.+|++++. ....+.+++..+|+++|++..| .++++|++||+||||+|||+||.|
T Consensus 50 ~~~~lGh~~p~v~~ai~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~~~~~~SGseA~e~Alk~a~~~~~~~~g~ 127 (396)
T PRK04073 50 SAVNQGHRHPKIIQALKDQADKVTLTSRAFHSDQLGPWYEKVAKLTG--KDMVLPMNTGAEAVETAIKAARRWAYDVKGV 127 (396)
T ss_pred HhccCCCCCHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHhcCC--CCeEEEcCChHHHHHHHHHHHHHHhhhccCC
Confidence 468899999999999999999873 3334667888999999999875 369999999999999999999998
Q ss_pred -cCCCceEEecC
Q psy6206 73 -TNNDDVITQDQ 83 (83)
Q Consensus 73 -~~r~~ii~~~~ 83 (83)
+||++||++++
T Consensus 128 ~~~r~~ii~~~~ 139 (396)
T PRK04073 128 EPNKAEIIACEG 139 (396)
T ss_pred CCCCCEEEEECC
Confidence 57889999864
No 68
>PLN02624 ornithine-delta-aminotransferase
Probab=99.83 E-value=5.5e-20 Score=128.10 Aligned_cols=81 Identities=27% Similarity=0.448 Sum_probs=70.0
Q ss_pred CccCCCCCCHHHHHHHHHHHHhhc-cCCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhhc------
Q psy6206 1 MSLPVGHCHPAVVKAACTQLALLN-TNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVHT------ 73 (83)
Q Consensus 1 ~~~~lGh~~p~i~~a~~~~~~~~~-~~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~~------ 73 (83)
|++++||+||+|++++.+|++++. ....+.+++..+|+++|++.+| .++++|++||+||||.|||+||.|+
T Consensus 85 ~~~~~Gh~~p~v~~ai~~ql~~~~~~~~~~~~~~~~~la~~L~~~~~--~~~~~f~~SGseA~e~AlklAr~~~~~~~g~ 162 (474)
T PLN02624 85 SAVNQGHCHPKIIKALTEQAEKLTLSSRAFYNDKFPEFAEYLTSMFG--YDMVLPMNTGAEGVETAIKLARKWGYEKKGI 162 (474)
T ss_pred hcccCCCCCHHHHHHHHHHHHhcCCcccccCCHHHHHHHHHHHhhcC--CCeEEEeCChHHHHHHHHHHHHHHHHhhcCC
Confidence 468899999999999999999984 3345778899999999999984 5799999999999999999999974
Q ss_pred --CCCceEEecC
Q psy6206 74 --NNDDVITQDQ 83 (83)
Q Consensus 74 --~r~~ii~~~~ 83 (83)
+|++||+|+|
T Consensus 163 ~~~~~~ii~~~~ 174 (474)
T PLN02624 163 PKNEAIIVSCCG 174 (474)
T ss_pred CCCCcEEEEECC
Confidence 3567998865
No 69
>PRK08088 4-aminobutyrate aminotransferase; Validated
Probab=99.83 E-value=6.6e-20 Score=125.95 Aligned_cols=83 Identities=30% Similarity=0.398 Sum_probs=72.3
Q ss_pred CccCCCCCCHHHHHHHHHHHHhh-ccC-CCCcchHHHHHHHHHHhhCCCCC-CeEEeeCChHHHHHHHHHHHHhhcCCCc
Q psy6206 1 MSLPVGHCHPAVVKAACTQLALL-NTN-NRFLHDNLVLCARKLASLLPDPL-SVCFFVNSGSEANDLALRLARVHTNNDD 77 (83)
Q Consensus 1 ~~~~lGh~~p~i~~a~~~~~~~~-~~~-~~~~~~~~~~la~~l~~~~p~~~-~~v~f~~sGseA~e~Alk~ar~~~~r~~ 77 (83)
|++++||+||+|.+++.+|++++ +.. ..+.+++..+|+++|++..|.+. ++++|++||+||+|.|+|+||.+++|.+
T Consensus 51 ~~~~lGh~~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~~~~f~~sGsea~e~Alklar~~~~r~~ 130 (425)
T PRK08088 51 AVLNTGHLHPKVVAAVEAQLKKLSHTCFQVLAYEPYLELCEKMNQKVPGDFAKKTLLVTTGSEAVENAVKIARAATKRSG 130 (425)
T ss_pred hhcCCCCCCHHHHHHHHHHHhhCCCccccccCCHHHHHHHHHHHHhCCCCCCCEEEEeCCcHHHHHHHHHHHHHHhCCCe
Confidence 56889999999999999999987 322 23457888999999999888655 6999999999999999999999999999
Q ss_pred eEEecC
Q psy6206 78 VITQDQ 83 (83)
Q Consensus 78 ii~~~~ 83 (83)
||+|++
T Consensus 131 iv~~~~ 136 (425)
T PRK08088 131 VIAFTG 136 (425)
T ss_pred EEEECC
Confidence 999874
No 70
>TIGR00713 hemL glutamate-1-semialdehyde-2,1-aminomutase. This enzyme, glutamate-1-semialdehyde-2,1-aminomutase (glutamate-1-semialdehyde aminotransferase, GSA aminotransferase), contains a pyridoxal phosphate attached at a Lys residue at position 283 of the seed alignment. It is in the family of class III aminotransferases.
Probab=99.82 E-value=7.7e-20 Score=125.22 Aligned_cols=81 Identities=35% Similarity=0.432 Sum_probs=72.0
Q ss_pred CccCCCCCCHHHHHHHHHHHHhhccCCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhhcCCCceEE
Q psy6206 1 MSLPVGHCHPAVVKAACTQLALLNTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVHTNNDDVIT 80 (83)
Q Consensus 1 ~~~~lGh~~p~i~~a~~~~~~~~~~~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~~~r~~ii~ 80 (83)
|+.++||+||+|++++.+|+++... ..++++...+|+++|++..|. .++|+|++|||||+|.|+|+||.++||++||+
T Consensus 58 ~~~~lGh~~p~v~~ai~~q~~~~~~-~~~~~~~~~~lae~l~~~~~~-~~~v~~~~sGseA~e~Alk~ar~~~gr~~ii~ 135 (423)
T TIGR00713 58 GPLILGHAHPRVVEAVKEALERGTS-YGAPTEAEILLAKEIISRVPS-VEMVRFVNSGTEATMSAVRLARGYTGRDKIIK 135 (423)
T ss_pred cccccCCCCHHHHHHHHHHHHhCCc-CCCCCHHHHHHHHHHHHhCCc-ccEEEEeCCHHHHHHHHHHHHHHhhCCCEEEE
Confidence 5778999999999999999998642 345678889999999999886 47999999999999999999999999999999
Q ss_pred ecC
Q psy6206 81 QDQ 83 (83)
Q Consensus 81 ~~~ 83 (83)
|++
T Consensus 136 ~~~ 138 (423)
T TIGR00713 136 FEG 138 (423)
T ss_pred EcC
Confidence 864
No 71
>KOG1403|consensus
Probab=99.82 E-value=4.9e-20 Score=122.30 Aligned_cols=80 Identities=70% Similarity=1.081 Sum_probs=75.2
Q ss_pred cCCCCCCHHHHHHHHHHHHhhccCCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhhcCCCceEEec
Q psy6206 3 LPVGHCHPAVVKAACTQLALLNTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVHTNNDDVITQD 82 (83)
Q Consensus 3 ~~lGh~~p~i~~a~~~~~~~~~~~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~~~r~~ii~~~ 82 (83)
.-.||+||+|++|...|+..+.+.+.|.++...+++++|...+|+ ++-+||+|||||||+.|+|+||.|++++.+|+++
T Consensus 57 aHvghchp~VV~A~~kQmat~~tN~RFlhd~lv~cA~~l~stlPe-Lsvc~F~NSGSEANDLALRLAR~ftkhqDvItld 135 (452)
T KOG1403|consen 57 AHVGHCHPEVVRAGAKQMATISTNNRFLHDELVQCARTLTSTLPE-LSVCFFVNSGSEANDLALRLARNFTKHQDVITLD 135 (452)
T ss_pred hhcccCCHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHhhcCCC-ceEEEEecCCchhhHHHHHHHHhhcccCceEEEe
Confidence 347999999999999999999888889999999999999999997 9999999999999999999999999999999987
Q ss_pred C
Q psy6206 83 Q 83 (83)
Q Consensus 83 ~ 83 (83)
+
T Consensus 136 H 136 (452)
T KOG1403|consen 136 H 136 (452)
T ss_pred c
Confidence 5
No 72
>PRK00062 glutamate-1-semialdehyde aminotransferase; Provisional
Probab=99.81 E-value=1.6e-19 Score=124.29 Aligned_cols=81 Identities=31% Similarity=0.330 Sum_probs=71.5
Q ss_pred CccCCCCCCHHHHHHHHHHHHhhccCCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhhcCCCceEE
Q psy6206 1 MSLPVGHCHPAVVKAACTQLALLNTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVHTNNDDVIT 80 (83)
Q Consensus 1 ~~~~lGh~~p~i~~a~~~~~~~~~~~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~~~r~~ii~ 80 (83)
|+.++||+||+|++++.+|+++.. ...++++...+|+++|++.+|. .++|+|++||+||+|.|+|+||.++||++||+
T Consensus 60 ~~~~lGh~~p~i~~a~~~~~~~~~-~~~~~~~~~~~la~~L~~~~~~-~~~v~~~~sGseA~e~Aik~a~~~~g~~~ii~ 137 (426)
T PRK00062 60 GPMILGHAHPEVVEAVIEAAEKGL-SFGAPTELEVELAELVIELVPS-IEMVRMVNSGTEATMSAIRLARGYTGRDKIIK 137 (426)
T ss_pred hhhhcCCCCHHHHHHHHHHHHhCC-cCCCCCHHHHHHHHHHHHhCCC-CCEEEEecCHHHHHHHHHHHHHHHhCCCeEEE
Confidence 357899999999999999998853 2345678889999999999874 78999999999999999999999999999999
Q ss_pred ecC
Q psy6206 81 QDQ 83 (83)
Q Consensus 81 ~~~ 83 (83)
|++
T Consensus 138 ~~~ 140 (426)
T PRK00062 138 FEG 140 (426)
T ss_pred EcC
Confidence 875
No 73
>PRK03715 argD acetylornithine transaminase protein; Provisional
Probab=99.81 E-value=1.7e-19 Score=123.22 Aligned_cols=81 Identities=33% Similarity=0.470 Sum_probs=69.6
Q ss_pred CccCCCCCCHHHHHHHHHHHHhh-ccCCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhhc-----C
Q psy6206 1 MSLPVGHCHPAVVKAACTQLALL-NTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVHT-----N 74 (83)
Q Consensus 1 ~~~~lGh~~p~i~~a~~~~~~~~-~~~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~~-----~ 74 (83)
|+.++||+||+|++++.+|++++ +....+.+++..+|+++|.+.. +.++++|++||+||||.|+|+||.|+ +
T Consensus 46 ~~~~lGh~~p~v~~a~~~q~~~~~~~~~~~~~~~~~~la~~l~~~~--~~~~v~f~~SGseA~e~Aik~ar~~~~~~~~~ 123 (395)
T PRK03715 46 AVNCLGHCNPGMVEALAAQAEKLINPSPAFYNEPMAKLAGLLTQHS--CFDKVFFANSGAEANEGAIKLARKWGRKHKNG 123 (395)
T ss_pred hhccCCCCCHHHHHHHHHHHHhcccccccccCHHHHHHHHHHhhcc--CCCEEEEeCCcHHHHHHHHHHHHHHhhccCCC
Confidence 47789999999999999999987 3334467889999999999875 36799999999999999999999884 6
Q ss_pred CCceEEecC
Q psy6206 75 NDDVITQDQ 83 (83)
Q Consensus 75 r~~ii~~~~ 83 (83)
|++||+|++
T Consensus 124 r~~ii~~~~ 132 (395)
T PRK03715 124 AYEIITFDH 132 (395)
T ss_pred CcEEEEECC
Confidence 788999875
No 74
>PRK01278 argD acetylornithine transaminase protein; Provisional
Probab=99.78 E-value=1.5e-18 Score=117.69 Aligned_cols=81 Identities=28% Similarity=0.316 Sum_probs=70.0
Q ss_pred CccCCCCCCHHHHHHHHHHHHhh-ccCCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhh------c
Q psy6206 1 MSLPVGHCHPAVVKAACTQLALL-NTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVH------T 73 (83)
Q Consensus 1 ~~~~lGh~~p~i~~a~~~~~~~~-~~~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~------~ 73 (83)
|++++||+||+|++|+.+|++++ +....+.++...+++++|++..| .++|+|++||+||++.|+|++|.| +
T Consensus 41 ~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~--~~~v~~~~sGseA~~~al~~ar~~~~~~G~~ 118 (389)
T PRK01278 41 AVNSLGHAHPHLVEALKEQAEKLWHVSNLYRIPEQERLAERLVENSF--ADKVFFTNSGAEAVECAIKTARRYHYGKGHP 118 (389)
T ss_pred hhccCCCCCHHHHHHHHHHHHhcCccccccCChHHHHHHHHHHhhCC--CCEEEEcCCcHHHHHHHHHHHHHHHHhcCCC
Confidence 46799999999999999999986 33334567888999999999885 469999999999999999999998 6
Q ss_pred CCCceEEecC
Q psy6206 74 NNDDVITQDQ 83 (83)
Q Consensus 74 ~r~~ii~~~~ 83 (83)
+|++||++++
T Consensus 119 ~r~~vi~~~~ 128 (389)
T PRK01278 119 ERYRIITFEG 128 (389)
T ss_pred CCCEEEEECC
Confidence 7889998874
No 75
>PRK05093 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; Reviewed
Probab=99.78 E-value=2e-18 Score=117.71 Aligned_cols=81 Identities=36% Similarity=0.503 Sum_probs=69.2
Q ss_pred CccCCCCCCHHHHHHHHHHHHhh-ccCCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhhc------
Q psy6206 1 MSLPVGHCHPAVVKAACTQLALL-NTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVHT------ 73 (83)
Q Consensus 1 ~~~~lGh~~p~i~~a~~~~~~~~-~~~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~~------ 73 (83)
|+.+|||+||+|.+++.+++++. +....+.+++..+|+++|++..+ .++++|++||+||||.|+|+||.++
T Consensus 50 ~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~~~~~~sGseA~e~a~klar~~~~~~~~~ 127 (403)
T PRK05093 50 AVTALGHCHPALVKALKEQGEKLWHISNVFTNEPALRLAKKLIDATF--AERVFFANSGAEANEAAFKLARRYACDRHGP 127 (403)
T ss_pred HhccCCCCCHHHHHHHHHHHHhcCcccCccCCHHHHHHHHHHHhhCC--CCEEEEeCchHHHHHHHHHHHHHHHhhcCCC
Confidence 46789999999999999999886 33334567788899999999874 4699999999999999999999995
Q ss_pred CCCceEEecC
Q psy6206 74 NNDDVITQDQ 83 (83)
Q Consensus 74 ~r~~ii~~~~ 83 (83)
+|++||+|++
T Consensus 128 ~~~~ii~~~~ 137 (403)
T PRK05093 128 EKTEIIAFHN 137 (403)
T ss_pred CCCeEEEEcC
Confidence 6888998875
No 76
>PRK00854 rocD ornithine--oxo-acid transaminase; Reviewed
Probab=99.75 E-value=1e-17 Score=113.85 Aligned_cols=81 Identities=28% Similarity=0.432 Sum_probs=69.2
Q ss_pred CccCCCCCCHHHHHHHHHHHHhhc-cCCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhh-------
Q psy6206 1 MSLPVGHCHPAVVKAACTQLALLN-TNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVH------- 72 (83)
Q Consensus 1 ~~~~lGh~~p~i~~a~~~~~~~~~-~~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~------- 72 (83)
|++++||+||+|.+++.+|++++. ....+.+++..+|+++|++..+. ++++|++||+||+|.|||++|.+
T Consensus 51 ~~~~~Gh~~~~i~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~--~~~~~~~SGs~A~e~al~~a~~~~~~~~g~ 128 (401)
T PRK00854 51 SAVNQGHCHPKILAAMVEQAGRLTLTSRAFRNDQLAPLYEELAALTGS--HKVLPMNSGAEAVETAIKAVRKWGYEVKGV 128 (401)
T ss_pred hhccCCCCCHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHhhCCC--CEEEEeCCcHHHHHHHHHHHHHHHHhccCC
Confidence 467899999999999999999873 33346678889999999998864 59999999999999999999987
Q ss_pred -cCCCceEEecC
Q psy6206 73 -TNNDDVITQDQ 83 (83)
Q Consensus 73 -~~r~~ii~~~~ 83 (83)
+||.+||+|.+
T Consensus 129 ~~~~~~vi~~~~ 140 (401)
T PRK00854 129 PEGQAEIIVCAD 140 (401)
T ss_pred CCCCceEEEECC
Confidence 36778998864
No 77
>PRK02936 argD acetylornithine aminotransferase; Provisional
Probab=99.73 E-value=2.9e-17 Score=110.86 Aligned_cols=81 Identities=40% Similarity=0.532 Sum_probs=69.5
Q ss_pred CccCCCCCCHHHHHHHHHHHHhh-ccCCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhhcCCCceE
Q psy6206 1 MSLPVGHCHPAVVKAACTQLALL-NTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVHTNNDDVI 79 (83)
Q Consensus 1 ~~~~lGh~~p~i~~a~~~~~~~~-~~~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~~~r~~ii 79 (83)
|+++|||+||+|++++.+|++++ +.+..+.++...+++++|.+..| .++++|++||+||++.|+|++|.++||++||
T Consensus 39 ~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~--~~~~~~~~sG~~a~~~A~~~a~~~~g~~~vi 116 (377)
T PRK02936 39 AVCNLGHCHPTVTKAVQEQLDDIWHVSNLFTNSLQEEVASLLAENSA--GDLVFFCNSGAEANEAALKLARKHTGKSKIV 116 (377)
T ss_pred hhccCCCCCHHHHHHHHHHHHhccccccccCCHHHHHHHHHHHhcCC--CCEEEEeCCcHHHHHHHHHHHHHhcCCCeEE
Confidence 46689999999999999999986 33334557788999999998775 3589999999999999999999999999999
Q ss_pred EecC
Q psy6206 80 TQDQ 83 (83)
Q Consensus 80 ~~~~ 83 (83)
++++
T Consensus 117 ~~~~ 120 (377)
T PRK02936 117 TFEQ 120 (377)
T ss_pred EECC
Confidence 9864
No 78
>TIGR01885 Orn_aminotrans ornithine aminotransferase. This model describes the final step in the biosynthesis of ornithine from glutamate via the non-acetylated pathway. Ornithine amino transferase takes L-glutamate 5-semialdehyde and makes it into ornithine, which is used in the urea cycle, as well as in the biosynthesis of arginine. This model includes low-GC bacteria and eukaryotic species. The genes from two species are annotated as putative acetylornithine aminotransferases - one from Porphyromonas gingivalis, and the other from Staphylococcus aureus. After homology searching using BLAST it was determined that these two sequences were most closely related to ornithine aminotransferases. This model's seed includes one characterized hit, from Bacillus subtilis.
Probab=99.73 E-value=4.3e-17 Score=111.09 Aligned_cols=81 Identities=28% Similarity=0.428 Sum_probs=68.6
Q ss_pred CccCCCCCCHHHHHHHHHHHHhhcc-CCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhh-------
Q psy6206 1 MSLPVGHCHPAVVKAACTQLALLNT-NNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVH------- 72 (83)
Q Consensus 1 ~~~~lGh~~p~i~~a~~~~~~~~~~-~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~------- 72 (83)
+++++||+||+|++++.++++++.. ...+.++...+|+++|.+.++ .++++|++||+||||.|+|++|.+
T Consensus 47 ~~~~~Gh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~~~~~~SGs~A~e~ai~~a~~~~~~~~~~ 124 (401)
T TIGR01885 47 SAVNQGHCHPKIVKALTEQAQKLTLSSRAFYNDVFGEFAEYVTKLFG--YDKVLPMNTGAEAVETAIKLARKWGYKVKGI 124 (401)
T ss_pred hhccCCCCCHHHHHHHHHHHHhccccccccCCHHHHHHHHHHHhhcC--CCEEEEeCccHHHHHHHHHHHHHHhhhhcCC
Confidence 3578999999999999999998743 233467888999999999985 579999999999999999999987
Q ss_pred -cCCCceEEecC
Q psy6206 73 -TNNDDVITQDQ 83 (83)
Q Consensus 73 -~~r~~ii~~~~ 83 (83)
++|++|+++++
T Consensus 125 ~~~~~~i~~~~~ 136 (401)
T TIGR01885 125 PENQAIIVSAKG 136 (401)
T ss_pred CCCCCEEEEECC
Confidence 35788998864
No 79
>PTZ00125 ornithine aminotransferase-like protein; Provisional
Probab=99.68 E-value=3.4e-16 Score=106.27 Aligned_cols=81 Identities=30% Similarity=0.464 Sum_probs=64.2
Q ss_pred CccCCCCCCHHHHHHHHHHHHhhcc-CCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhhc------
Q psy6206 1 MSLPVGHCHPAVVKAACTQLALLNT-NNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVHT------ 73 (83)
Q Consensus 1 ~~~~lGh~~p~i~~a~~~~~~~~~~-~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~~------ 73 (83)
+++++||+||+|++++.+|++++.. ...+.++....+.+.|.+.. +.++++|++||+||+|.|||++|.+.
T Consensus 41 ~~~~~Gh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~SGs~A~e~al~~~~~~~~~~~~~ 118 (400)
T PTZ00125 41 SAVNQGHCHPKILAALINQAQKLTLTSRAFYNDVLGLAEKYITDLF--GYDKVLPMNSGAEAGETALKFARKWGYEVKGI 118 (400)
T ss_pred hhccCCcCCHHHHHHHHHHHHhcccccccccCHHHHHHHHHHHhCC--CCCEEEEeCCcHHHHHHHHHHHHHHHHhccCC
Confidence 4678999999999999999988743 33344666667777777655 36799999999999999999999762
Q ss_pred --CCCceEEecC
Q psy6206 74 --NNDDVITQDQ 83 (83)
Q Consensus 74 --~r~~ii~~~~ 83 (83)
++++||++++
T Consensus 119 ~~~~~~vl~~~~ 130 (400)
T PTZ00125 119 PENQAKIIFCNG 130 (400)
T ss_pred CCCCCeEEEECC
Confidence 4578988864
No 80
>cd00610 OAT_like Acetyl ornithine aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation.
Probab=99.65 E-value=1.9e-15 Score=102.61 Aligned_cols=82 Identities=41% Similarity=0.554 Sum_probs=70.5
Q ss_pred ccCCCCCCHHHHHHHHHHHHhhcc-CCC-CcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhhcCCCceE
Q psy6206 2 SLPVGHCHPAVVKAACTQLALLNT-NNR-FLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVHTNNDDVI 79 (83)
Q Consensus 2 ~~~lGh~~p~i~~a~~~~~~~~~~-~~~-~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~~~r~~ii 79 (83)
++++||+||+|++++.+++++... ... ..++...+++++|++..|.+.++++|++||+||++.|++++|.++++.+||
T Consensus 47 ~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~v~~~~sgsea~~~al~~~~~~~~~~~ii 126 (413)
T cd00610 47 VLNLGHNHPEVVEALKEQLAKLTHFSLGFFYNEPAVELAELLLALTPEGLDKVFFVNSGTEAVEAALKLARAYTGRKKII 126 (413)
T ss_pred hhccCCCCHHHHHHHHHHHHhCcCccCcccCCHHHHHHHHHHHHhCCCCCCEEEEcCcHHHHHHHHHHHHHHHcCCCeEE
Confidence 567999999999999999987632 221 247788999999999998667899999999999999999999999999999
Q ss_pred EecC
Q psy6206 80 TQDQ 83 (83)
Q Consensus 80 ~~~~ 83 (83)
.+++
T Consensus 127 ~~~~ 130 (413)
T cd00610 127 SFEG 130 (413)
T ss_pred EECC
Confidence 8863
No 81
>PRK03244 argD acetylornithine aminotransferase; Provisional
Probab=99.64 E-value=2.2e-15 Score=102.37 Aligned_cols=81 Identities=40% Similarity=0.607 Sum_probs=68.9
Q ss_pred CccCCCCCCHHHHHHHHHHHHhh-ccCCCCcchHHHHHHHHHHhhCCCC-CCeEEeeCChHHHHHHHHHHHHhhcCCCce
Q psy6206 1 MSLPVGHCHPAVVKAACTQLALL-NTNNRFLHDNLVLCARKLASLLPDP-LSVCFFVNSGSEANDLALRLARVHTNNDDV 78 (83)
Q Consensus 1 ~~~~lGh~~p~i~~a~~~~~~~~-~~~~~~~~~~~~~la~~l~~~~p~~-~~~v~f~~sGseA~e~Alk~ar~~~~r~~i 78 (83)
|+.+|||+||+|.+++.+++++. +....+.++...+|+++|.+..+.. .++++|++||+||++.|+|+++. +||++|
T Consensus 53 ~~~~lG~~~p~v~~ai~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~~v~~~~sgsea~~~al~~~~~-~g~~~i 131 (398)
T PRK03244 53 AVNALGHAHPAVVEAVTRQLATLGHVSNLFATEPQIALAERLVELLGAPEGGRVFFCNSGAEANEAAFKLARL-TGRTKI 131 (398)
T ss_pred hhccCCCCCHHHHHHHHHHHHhccCccCccCCHHHHHHHHHHHHhCCCCCCCEEEEeCchHHHHHHHHHHHHH-HCCCeE
Confidence 36789999999999999999986 3334567778899999999998743 47999999999999999999998 678888
Q ss_pred EEec
Q psy6206 79 ITQD 82 (83)
Q Consensus 79 i~~~ 82 (83)
|+++
T Consensus 132 i~~~ 135 (398)
T PRK03244 132 VAAE 135 (398)
T ss_pred EEEC
Confidence 8875
No 82
>PRK04260 acetylornithine aminotransferase; Provisional
Probab=99.63 E-value=3.3e-15 Score=101.04 Aligned_cols=79 Identities=33% Similarity=0.418 Sum_probs=63.9
Q ss_pred CccCCCCCCHHHHHHHHHHHHhhc-cCCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhhcCCCceE
Q psy6206 1 MSLPVGHCHPAVVKAACTQLALLN-TNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVHTNNDDVI 79 (83)
Q Consensus 1 ~~~~lGh~~p~i~~a~~~~~~~~~-~~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~~~r~~ii 79 (83)
|++++|| ||+|.+++.+|++++. ..+.+.++...++++.|+.. ...+++|++||+||++.|+|++|.+++|.+||
T Consensus 39 ~~~~lG~-~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~---~~~~~~~~~SGseA~~~Al~~ar~~~~~~~vv 114 (375)
T PRK04260 39 GVTNLGF-HPQVQQALQKQAGLIWHSPNLYLNSLQEEVAQKLIGD---KDYLAFFCNSGAEANEAAIKIARKATGKQEII 114 (375)
T ss_pred ccccCCC-CHHHHHHHHHHHHhcCcccCccCCHHHHHHHHHHhcC---cCCEEEEcCccHHHHHHHHHHHHHhcCCCeEE
Confidence 4678999 9999999999998762 33345567778888877652 12478999999999999999999999999999
Q ss_pred EecC
Q psy6206 80 TQDQ 83 (83)
Q Consensus 80 ~~~~ 83 (83)
++++
T Consensus 115 ~~~~ 118 (375)
T PRK04260 115 TFQN 118 (375)
T ss_pred EECC
Confidence 8753
No 83
>KOG1402|consensus
Probab=99.62 E-value=2e-15 Score=101.20 Aligned_cols=70 Identities=31% Similarity=0.440 Sum_probs=63.1
Q ss_pred ccCCCCCCHHHHHHHHHHHHhhccC-CCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhhc
Q psy6206 2 SLPVGHCHPAVVKAACTQLALLNTN-NRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVHT 73 (83)
Q Consensus 2 ~~~lGh~~p~i~~a~~~~~~~~~~~-~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~~ 73 (83)
+++-|||||.|++++.+|.+++... ..+++....++++.+.+++ ++++|.-+|+|.||+|.|+|+||+|.
T Consensus 70 aVnqGhchpki~~aLqeq~~kLtlssrafYnd~~~~f~~~vt~lf--~~~kvlpmnTGaEa~Eta~KLaR~wg 140 (427)
T KOG1402|consen 70 AVNQGHCHPKIIKALQEQADKLTLSSRAFYNDVLGEFAEYVTKLF--GYDKVLPMNTGAEAVETACKLARKWG 140 (427)
T ss_pred hcccCCCCHHHHHHHHHHHhHhhhhhHHHhhhhHHHHHHHHHHhc--CcceeeecccchhHHHHHHHHHHHHH
Confidence 6889999999999999999998643 4577888999999999999 46899999999999999999999884
No 84
>PRK02627 acetylornithine aminotransferase; Provisional
Probab=99.59 E-value=1.2e-14 Score=98.38 Aligned_cols=80 Identities=38% Similarity=0.522 Sum_probs=68.6
Q ss_pred CccCCCCCCHHHHHHHHHHHHhhc-cCCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhhcCC----
Q psy6206 1 MSLPVGHCHPAVVKAACTQLALLN-TNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVHTNN---- 75 (83)
Q Consensus 1 ~~~~lGh~~p~i~~a~~~~~~~~~-~~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~~~r---- 75 (83)
++.++||+||++.+++.+++++.. ....++++...+|+++|.+.. +.++++|++||+||++.|+|++|.++++
T Consensus 49 ~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~--~~~~v~~~~gg~eA~~~al~~a~~~~~~~~~~ 126 (396)
T PRK02627 49 AVNNLGHCHPKLVEAIQEQAAKLIHTSNLYYIEPQEELAEKLVELS--GMDKVFFCNSGAEANEAAIKLARKYGHKKGIE 126 (396)
T ss_pred HhccCCCCCHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHhhc--CCCEEEECCCcHHHHHHHHHHHHHHhcccCCC
Confidence 367899999999999999998863 334566788899999999986 4689999999999999999999999887
Q ss_pred -CceEEec
Q psy6206 76 -DDVITQD 82 (83)
Q Consensus 76 -~~ii~~~ 82 (83)
.+|++++
T Consensus 127 ~~~ii~~~ 134 (396)
T PRK02627 127 KPEIITAE 134 (396)
T ss_pred CCeEEEEC
Confidence 7788775
No 85
>TIGR00707 argD acetylornithine and succinylornithine aminotransferases. Members of this family may also act on ornithine, like ornithine aminotransferase (EC 2.6.1.13) (see MEDLINE:90337349) and on succinyldiaminopimelate, like N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17, DapC, an enzyme of lysine biosynthesis) (see MEDLINE:99175097)
Probab=99.39 E-value=4.7e-12 Score=85.30 Aligned_cols=80 Identities=35% Similarity=0.457 Sum_probs=67.2
Q ss_pred CccCCCCCCHHHHHHHHHHHHhh-ccCCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhhcC-----
Q psy6206 1 MSLPVGHCHPAVVKAACTQLALL-NTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVHTN----- 74 (83)
Q Consensus 1 ~~~~lGh~~p~i~~a~~~~~~~~-~~~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~~~----- 74 (83)
|+.++||+||.|.+++.+++++. .....++++...+|+++|.+..+ .+++++++||+||++.|++++|.+++
T Consensus 37 ~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g--~~~~~~~~sg~~a~~~a~~~~~~~~~~~~~~ 114 (379)
T TIGR00707 37 AVNSLGHAHPKLVEALKEQLEKLVHVSNLYYTEPQEELAEKLVEHSG--ADRVFFCNSGAEANEAALKLARKYTGDKGKE 114 (379)
T ss_pred hhccCCCCCHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHhhCC--CCEEEEeCCcHHHHHHHHHHHHHHhhccCCC
Confidence 36789999999999999999876 33334567888999999999985 46999999999999999999998876
Q ss_pred CCceEEec
Q psy6206 75 NDDVITQD 82 (83)
Q Consensus 75 r~~ii~~~ 82 (83)
+.+|++++
T Consensus 115 ~~~vi~~~ 122 (379)
T TIGR00707 115 KKKIIAFE 122 (379)
T ss_pred CCeEEEEC
Confidence 57788765
No 86
>PRK07505 hypothetical protein; Provisional
Probab=99.30 E-value=3.1e-11 Score=82.46 Aligned_cols=78 Identities=22% Similarity=0.166 Sum_probs=61.7
Q ss_pred ccCCC-CCCHHHHHHHHHHHHhhc--c--CC--CCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHh--h
Q psy6206 2 SLPVG-HCHPAVVKAACTQLALLN--T--NN--RFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARV--H 72 (83)
Q Consensus 2 ~~~lG-h~~p~i~~a~~~~~~~~~--~--~~--~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~--~ 72 (83)
+..+| |+||+|++|+.+|+++.. . .+ .+.++...+++++|.+.++. ++++.+||++|++.++|+++. +
T Consensus 54 ~~~lgl~~~p~v~~A~~~~l~~~g~~~~~~~~~~~~~~~~~~l~~~la~~~~~---~~~~~~sG~~a~~~ai~~~~~~~~ 130 (402)
T PRK07505 54 CSYLGLDTHPAIIEGAVDALKRTGSLHLSSSRTRVRSQILKDLEEALSELFGA---SVLTFTSCSAAHLGILPLLASGHL 130 (402)
T ss_pred CCccCCCCCHHHHHHHHHHHHHhCCCCCCccchhhhhHHHHHHHHHHHHHhCC---CEEEECChHHHHHHHHHHHHhccc
Confidence 45788 999999999999998741 1 11 23467789999999999864 788888999999999999874 3
Q ss_pred c-CCCceEEec
Q psy6206 73 T-NNDDVITQD 82 (83)
Q Consensus 73 ~-~r~~ii~~~ 82 (83)
+ +|.+||+++
T Consensus 131 ~~~~~~vi~~~ 141 (402)
T PRK07505 131 TGGVPPHMVFD 141 (402)
T ss_pred CCCCCCEEEEc
Confidence 4 577788775
No 87
>KOG1405|consensus
Probab=99.17 E-value=1.7e-11 Score=83.20 Aligned_cols=73 Identities=30% Similarity=0.275 Sum_probs=58.8
Q ss_pred CccCCCCCCHHHHHHHHH-HHHhh----ccCCCCcc-hHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhhc
Q psy6206 1 MSLPVGHCHPAVVKAACT-QLALL----NTNNRFLH-DNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVHT 73 (83)
Q Consensus 1 ~~~~lGh~~p~i~~a~~~-~~~~~----~~~~~~~~-~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~~ 73 (83)
.++++|||||.++++..+ +..+. +..+.+|. +....+.+.|..+.|.+.++|+++-|||+|||+|+|.|+.|.
T Consensus 86 sSvplGYn~P~LvK~a~~p~~~~~lvnRPALg~fP~kd~~~~l~~~ll~~APKG~~~v~tm~cGs~aNEnA~K~afiwy 164 (484)
T KOG1405|consen 86 SSVPLGYNNPALVKAAQQPQNATMLVNRPALGNFPPKDFAEKLRQSLLSIAPKGQKQVITMLCGSCANENAYKTAFIWY 164 (484)
T ss_pred cccccCCCCHHHHHHhcChHHHHHHhccccccCCChhhHHHHHHHHHHhhCcchHHHHHHHhccccccHHHHHHHHHHH
Confidence 368999999999998855 44432 33455665 445667777899999999999999999999999999999884
No 88
>PRK13393 5-aminolevulinate synthase; Provisional
Probab=98.76 E-value=7.4e-08 Score=66.01 Aligned_cols=68 Identities=28% Similarity=0.273 Sum_probs=53.4
Q ss_pred CCC-CCHHHHHHHHHHHHhhccC---CC---CcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHH-HHHhhcC
Q psy6206 5 VGH-CHPAVVKAACTQLALLNTN---NR---FLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALR-LARVHTN 74 (83)
Q Consensus 5 lGh-~~p~i~~a~~~~~~~~~~~---~~---~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk-~ar~~~~ 74 (83)
||- +||+|++++.++++++... +. ..++...+|.++|.+.++. ++++|.+||++|++.|++ +++.+++
T Consensus 56 lgl~~~p~v~~a~~~~~~~~~~~~~~s~~~~~~~~~~~~le~~la~~~g~--~~~~~~~SG~~An~~ai~~l~~~~~g 131 (406)
T PRK13393 56 LGMGQHPAVLAAMHEALDTCGAGAGGTRNISGTNHYHVLLEAELADLHGK--EAALLFTSGYVSNWAALSTLGSRLPG 131 (406)
T ss_pred cCCCCCHHHHHHHHHHHHHcCCCCcccccccCChHHHHHHHHHHHHHhCC--CcEEEeCCcHHHHHHHHHHhhcCCCC
Confidence 566 6999999999999986321 11 2345678999999999964 689999999999999999 6765554
No 89
>PRK09064 5-aminolevulinate synthase; Validated
Probab=98.56 E-value=9.8e-07 Score=60.37 Aligned_cols=68 Identities=25% Similarity=0.208 Sum_probs=53.3
Q ss_pred CCCCC-CHHHHHHHHHHHHhhccC-----CC-CcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhhc
Q psy6206 4 PVGHC-HPAVVKAACTQLALLNTN-----NR-FLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVHT 73 (83)
Q Consensus 4 ~lGh~-~p~i~~a~~~~~~~~~~~-----~~-~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~~ 73 (83)
-+|++ ||+|++++.+++++.... .. .+++...+|.++|.+..+ .+..++.+||++|++.++++++.+.
T Consensus 56 ylgl~~~p~v~~a~~~~~~~~~~~~~~s~~~~g~~~~~~~l~~~la~~~g--~~~~~~~~sG~~an~~ai~~l~~~~ 130 (407)
T PRK09064 56 YLGMGQHPKVIEAMIEALDRCGAGAGGTRNISGTNHYHVELERELADLHG--KEAALVFTSGYVSNDATLSTLAKLI 130 (407)
T ss_pred CcCCCCCHHHHHHHHHHHHHcCCCCCCcCcCccCHHHHHHHHHHHHHHhC--CCcEEEECcHHHHHHHHHHHHhCCC
Confidence 38887 899999999999886221 11 246678899999999885 3567888999999999999876653
No 90
>TIGR01821 5aminolev_synth 5-aminolevulinic acid synthase. This model represents 5-aminolevulinic acid synthase, an enzyme for one of two routes to the heme precursor 5-aminolevulinate. The protein is a pyridoxal phosphate-dependent enzyme related to 2-amino-3-ketobutyrate CoA tranferase and 8-amino-7-oxononanoate synthase. This enzyme appears restricted to the alpha Proteobacteria and mitochondrial derivatives.
Probab=98.49 E-value=1.6e-06 Score=59.23 Aligned_cols=63 Identities=24% Similarity=0.168 Sum_probs=50.3
Q ss_pred CCHHHHHHHHHHHHhhccC---C---CCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhh
Q psy6206 8 CHPAVVKAACTQLALLNTN---N---RFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVH 72 (83)
Q Consensus 8 ~~p~i~~a~~~~~~~~~~~---~---~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~ 72 (83)
+||+|++++.+++++.... + ...++...+|.++|.+..+. +..++.+||++|++.++++++.+
T Consensus 60 ~~p~v~~a~~~~~~~~~~~~~~s~~~~g~~~~~~~Le~~la~~~g~--~~~l~~~sG~~an~~ai~~l~~~ 128 (402)
T TIGR01821 60 QHPEVLQAMHETLDKYGAGAGGTRNISGTNIPHVELEAELADLHGK--ESALVFTSGYVANDATLATLAKI 128 (402)
T ss_pred CCHHHHHHHHHHHHHcCCCCcchhhhhCCcHHHHHHHHHHHHHhCC--CeEEEECchHHHHHHHHHHhhCC
Confidence 4899999999999986321 1 12456778999999999963 57888999999999999988754
No 91
>PRK13520 L-tyrosine decarboxylase; Provisional
Probab=98.17 E-value=2.5e-05 Score=52.46 Aligned_cols=78 Identities=23% Similarity=0.208 Sum_probs=54.5
Q ss_pred CCCCCHHHHHHHHHHHHhh-ccCCCCcc--hHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhhc--CCCceE
Q psy6206 5 VGHCHPAVVKAACTQLALL-NTNNRFLH--DNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVHT--NNDDVI 79 (83)
Q Consensus 5 lGh~~p~i~~a~~~~~~~~-~~~~~~~~--~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~~--~r~~ii 79 (83)
.-|.+|.+++++.++++.. ..+..++. +...++.+.|.+....+...++|+++|+||++.+++.++... ++.+||
T Consensus 29 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~~~~~ggt~a~~~a~~~~~~~~~~~~~~vl 108 (371)
T PRK13520 29 CTEPHPIARKAHEMFLETNLGDPGLFPGTAKLEEEAVEMLGELLHLPDAYGYITSGGTEANIQAVRAARNLAKAEKPNIV 108 (371)
T ss_pred ecCchHHHHHHHHHHHhcCCCCcccCccHHHHHHHHHHHHHHHhCCCCCCeEEecCcHHHHHHHHHHHHhhccCCCceEE
Confidence 3568999999999988753 22222322 333678888888876444468899999999999999887652 344676
Q ss_pred Eec
Q psy6206 80 TQD 82 (83)
Q Consensus 80 ~~~ 82 (83)
..+
T Consensus 109 ~~~ 111 (371)
T PRK13520 109 VPE 111 (371)
T ss_pred ecC
Confidence 643
No 92
>COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]
Probab=98.16 E-value=9.3e-06 Score=56.02 Aligned_cols=72 Identities=21% Similarity=0.248 Sum_probs=50.5
Q ss_pred CHHHHHHHHHHHHhhc-cCCC------CcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHH-Hhhc---CCCc
Q psy6206 9 HPAVVKAACTQLALLN-TNNR------FLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLA-RVHT---NNDD 77 (83)
Q Consensus 9 ~p~i~~a~~~~~~~~~-~~~~------~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~a-r~~~---~r~~ 77 (83)
+|++.+++...+...+ .++. ......++..+.+.+.++.....++|+++|||++..|||=+ ..+. ++++
T Consensus 14 ~~~v~~~m~~~~~~~fgNPsS~H~~G~~A~~~ve~AR~~iA~llga~~~eIiFTSG~TEsnNlaI~g~~~a~~~~~~~~H 93 (386)
T COG1104 14 DPEVLEAMLPYLTEVFGNPSSLHSFGREARKAVEEAREQIAKLLGADPEEIIFTSGATESNNLAIKGAALAYRNAQKGKH 93 (386)
T ss_pred CHHHHHHHHHHHHhhcCCccchhHhHHHHHHHHHHHHHHHHHHhCCCCCeEEEecCCcHHHHHHHHhhHHhhhcccCCCe
Confidence 6999999999887752 1111 12334566777788888776789999999999999999943 2221 3456
Q ss_pred eEE
Q psy6206 78 VIT 80 (83)
Q Consensus 78 ii~ 80 (83)
||+
T Consensus 94 IIt 96 (386)
T COG1104 94 IIT 96 (386)
T ss_pred EEE
Confidence 664
No 93
>cd00613 GDC-P Glycine cleavage system P-protein, alpha- and beta-subunits. This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <= S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life.
Probab=98.08 E-value=1.9e-05 Score=53.65 Aligned_cols=78 Identities=18% Similarity=0.060 Sum_probs=53.9
Q ss_pred ccCCCCCCHHHHHHHHHHHHhhcc-CC-------CCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhhc
Q psy6206 2 SLPVGHCHPAVVKAACTQLALLNT-NN-------RFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVHT 73 (83)
Q Consensus 2 ~~~lGh~~p~i~~a~~~~~~~~~~-~~-------~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~~ 73 (83)
....||++|++++++.+++ ..+. +. ....+...++++.+.+..+.+.+.+.|+++|+++.+.+++.++...
T Consensus 27 ~g~~~~~~p~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~la~~~g~~~~~v~~~~~g~~~~~~~~~~~~~~~ 105 (398)
T cd00613 27 SGTYKHNPPAVIKRNILEN-EFYTAYTPYQPEISQGRLQALFELQTMLCELTGMDVANASLQDEATAAAEAAGLAAIRAY 105 (398)
T ss_pred ccccCCcCcHHHHHHhccc-cCcccCCCCChhhhhhHHHHHHHHHHHHHHHHCCCccceeccCchHHHHHHHHHHHHhcc
Confidence 4568999999999887777 3311 11 1122455788888888886555578888888888899999887665
Q ss_pred C-CCceEE
Q psy6206 74 N-NDDVIT 80 (83)
Q Consensus 74 ~-r~~ii~ 80 (83)
+ ...|+.
T Consensus 106 ~~gd~Vl~ 113 (398)
T cd00613 106 HKRNKVLV 113 (398)
T ss_pred cCCCEEEE
Confidence 2 234554
No 94
>PRK07179 hypothetical protein; Provisional
Probab=98.07 E-value=2.9e-05 Score=53.29 Aligned_cols=61 Identities=28% Similarity=0.324 Sum_probs=47.1
Q ss_pred CCHHHHHHHHHHHHhhc---c-CCCCcc--hHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHH
Q psy6206 8 CHPAVVKAACTQLALLN---T-NNRFLH--DNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLAR 70 (83)
Q Consensus 8 ~~p~i~~a~~~~~~~~~---~-~~~~~~--~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar 70 (83)
+||+|++++.+++++.. . ++.+.. +...+|.++|.+.++. +.++|++||+||++.+++...
T Consensus 69 ~~p~v~~a~~~~~~~~~~~~~~s~~~~~~~~~~~~le~~la~~~g~--~~~~~~~sG~~An~~~l~~l~ 135 (407)
T PRK07179 69 GHPDIIKAQIAALQEEGDSLVMSAVFLHDDSPKPQFEKKLAAFTGF--ESCLLCQSGWAANVGLLQTIA 135 (407)
T ss_pred CCHHHHHHHHHHHHHhCCCCCccccccCCchHHHHHHHHHHHHhCC--CcEEEECCHHHHHHHHHHHhC
Confidence 68999999999998752 1 222222 4668889999998853 577899999999999999654
No 95
>cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life.
Probab=97.86 E-value=0.00025 Score=47.15 Aligned_cols=66 Identities=24% Similarity=0.200 Sum_probs=49.5
Q ss_pred ccCCCCC-CHHHHHHHHHHHHhhccC-C-----CCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHH
Q psy6206 2 SLPVGHC-HPAVVKAACTQLALLNTN-N-----RFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLA 69 (83)
Q Consensus 2 ~~~lGh~-~p~i~~a~~~~~~~~~~~-~-----~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~a 69 (83)
+..|||. ||+|.+++.+.+++.... + ....+...++.+.|.+..+. +..++.++|++++..++...
T Consensus 9 ~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~--~~~iv~~sg~~a~~~~~~~~ 81 (349)
T cd06454 9 NDYLGLANHPEVIEAAKEALDKYGVGAGGSRLISGTSDLHEELEEELAEFHGK--EAALVFSSGYAANDGVLSTL 81 (349)
T ss_pred CCccccCCCHHHHHHHHHHHHHhCCCCCCcCeecCCchHHHHHHHHHHHHhCC--CCEEEeccHHHHHHHHHHHh
Confidence 4568997 999999999999875221 1 12356678888889888864 35677899999999888644
No 96
>PRK05958 8-amino-7-oxononanoate synthase; Reviewed
Probab=97.71 E-value=0.00063 Score=45.80 Aligned_cols=63 Identities=19% Similarity=0.116 Sum_probs=46.9
Q ss_pred CCCC-CCHHHHHHHHHHHHhhcc-C-----CCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHH
Q psy6206 4 PVGH-CHPAVVKAACTQLALLNT-N-----NRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRL 68 (83)
Q Consensus 4 ~lGh-~~p~i~~a~~~~~~~~~~-~-----~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ 68 (83)
++|| .+|++++++.++++.... . ...+.+...++.+.+.+... .+.++++++|++++..+++.
T Consensus 49 ~~g~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~~--~~~~i~~~~g~~~~~~~l~~ 118 (385)
T PRK05958 49 YLGLARHPRLIAAAQQAARRYGAGSGGSRLVTGNSPAHEALEEELAEWFG--AERALLFSSGYAANLAVLTA 118 (385)
T ss_pred cccCCCCHHHHHHHHHHHHhcCCCCCCcCcccCCcHHHHHHHHHHHHHhC--CCcEEEECcHHHHHHHHHHH
Confidence 5787 789999999999987421 1 11235667889998988875 35677788999999988764
No 97
>PRK13392 5-aminolevulinate synthase; Provisional
Probab=97.66 E-value=0.00058 Score=46.95 Aligned_cols=65 Identities=28% Similarity=0.340 Sum_probs=47.6
Q ss_pred CCHHHHHHHHHHHHhhccC---C-C-C-cchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHH-HHHhhcC
Q psy6206 8 CHPAVVKAACTQLALLNTN---N-R-F-LHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALR-LARVHTN 74 (83)
Q Consensus 8 ~~p~i~~a~~~~~~~~~~~---~-~-~-~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk-~ar~~~~ 74 (83)
+||++++++.+++++.... + . + .++...+|.++|.+..+. +..++.+||++|++.+++ +++...|
T Consensus 61 ~~p~v~~a~~~~~~~~~~~~~~s~~~~~~~~~~~~Le~~la~~~g~--~~~i~~~sG~~a~~~~i~~l~~~~~g 132 (410)
T PRK13392 61 QHPDVIGAMVDALDRYGAGAGGTRNISGTSHPHVLLERELADLHGK--ESALLFTSGYVSNDAALSTLGKLLPG 132 (410)
T ss_pred CCHHHHHHHHHHHHHcCCCCchhhhcccChHHHHHHHHHHHHHhCC--CCEEEECcHHHHHHHHHHHHhcCCCC
Confidence 5899999999999886221 1 1 2 234567899999999864 467777889999999999 5443344
No 98
>KOG1549|consensus
Probab=97.65 E-value=0.00057 Score=47.84 Aligned_cols=78 Identities=23% Similarity=0.335 Sum_probs=53.5
Q ss_pred CCCCCHHHHHHHHHHHHhh---ccCCCCc---chHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHH-HHHhhc--CC
Q psy6206 5 VGHCHPAVVKAACTQLALL---NTNNRFL---HDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALR-LARVHT--NN 75 (83)
Q Consensus 5 lGh~~p~i~~a~~~~~~~~---~~~~~~~---~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk-~ar~~~--~r 75 (83)
.|=.+|.|.+|+.+.+... +....+. .+..+...+.+.++...+.+.+.|++++||++..++| ++|.+. .+
T Consensus 52 t~p~~~~Vldam~~~~~~~~~nPh~~~y~w~~~~~~E~aR~~VAklInAd~~dIiFts~ATEs~Nlvl~~v~~~~~~~~~ 131 (428)
T KOG1549|consen 52 TGPMDPRVLDAMLPYLLEYLGNPHSRSYGWKAEDAVEAAREQVAKLINADPSDIVFTSGATESNNLVLKGVARFFGDKTK 131 (428)
T ss_pred CCCCCHHHHHHHHHHHHHhhcCCCccccchhhhHHHHHHHHHHHHHhCCCCCcEEEeCCchHHHHHHHHHhhcccccccc
Confidence 4556899999999988764 2211111 2224455566667777666679999999999999999 677654 23
Q ss_pred CceEEec
Q psy6206 76 DDVITQD 82 (83)
Q Consensus 76 ~~ii~~~ 82 (83)
++||+++
T Consensus 132 k~iitl~ 138 (428)
T KOG1549|consen 132 KHIITLQ 138 (428)
T ss_pred ceEEEec
Confidence 4788764
No 99
>PLN02822 serine palmitoyltransferase
Probab=97.55 E-value=0.00084 Score=47.54 Aligned_cols=70 Identities=14% Similarity=0.105 Sum_probs=51.3
Q ss_pred CCHHHHHHHHHHHHhh-c--cC---CCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhhcCCCceEEe
Q psy6206 8 CHPAVVKAACTQLALL-N--TN---NRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVHTNNDDVITQ 81 (83)
Q Consensus 8 ~~p~i~~a~~~~~~~~-~--~~---~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~~~r~~ii~~ 81 (83)
.||+|++++.+++++. . .. ...+++...+|.++|++..+. .+.++|+++++ ++..+++ .+.+|..+|.+
T Consensus 124 ~~~~i~ea~~~al~~~G~g~~g~r~~yg~~~~~~~Lee~La~~~~~-~~~i~~s~G~~-a~~sai~---a~~~~gd~Ii~ 198 (481)
T PLN02822 124 GNEKIKESCTSALEKYGVGSCGPRGFYGTIDVHLDCETKIAKFLGT-PDSILYSYGLS-TIFSVIP---AFCKKGDIIVA 198 (481)
T ss_pred CCHHHHHHHHHHHHHhCCCCcccCccccCHHHHHHHHHHHHHHhCC-CCEEEECCHHH-HHHHHHH---HhCCCCCEEEE
Confidence 6899999999999985 2 11 113457789999999999985 46788886655 6777766 45677666665
Q ss_pred c
Q psy6206 82 D 82 (83)
Q Consensus 82 ~ 82 (83)
+
T Consensus 199 d 199 (481)
T PLN02822 199 D 199 (481)
T ss_pred e
Confidence 4
No 100
>TIGR01825 gly_Cac_T_rel pyridoxal phosphate-dependent acyltransferase, putative. This model represents an enzyme subfamily related to three known enzymes; it appears closest to glycine C-acteyltransferase, shows no overlap with it in species distribution, and may share that function. The three closely related enzymes are glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase), 5-aminolevulinic acid synthase, and 8-amino-7-oxononanoate synthase. All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions.
Probab=97.50 E-value=0.0023 Score=43.34 Aligned_cols=64 Identities=19% Similarity=0.113 Sum_probs=47.5
Q ss_pred CCCC-CCHHHHHHHHHHHHhh-ccCC-----CCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHH
Q psy6206 4 PVGH-CHPAVVKAACTQLALL-NTNN-----RFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLA 69 (83)
Q Consensus 4 ~lGh-~~p~i~~a~~~~~~~~-~~~~-----~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~a 69 (83)
.+|| .+|.+++++.+++++. ...+ ....+...++++.+.+..+. +..++.+||++++..+++..
T Consensus 43 ~~g~~~~~~~~~a~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~l~~~~g~--~~~i~~~sG~~a~~~a~~~~ 113 (385)
T TIGR01825 43 YLGFADHPRLKEAAAQAIQQYGVGAGAVRTIAGTLRLHEELEEKLAKFKKT--EAALVFQSGFNTNQGVLSAL 113 (385)
T ss_pred ccCCCCCHHHHHHHHHHHHHcCCCCCccCcccCCcHHHHHHHHHHHHHhCC--CcEEEECcHHHHHHHHHHHh
Confidence 4799 8999999999998764 2111 12245678899999888753 35677789999999988864
No 101
>TIGR03402 FeS_nifS cysteine desulfurase NifS. Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403.
Probab=97.43 E-value=0.0037 Score=42.40 Aligned_cols=76 Identities=17% Similarity=0.247 Sum_probs=51.5
Q ss_pred CCCCCHHHHHHHHHHHHhhc-cCCCCc------chHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHh-hcCCC
Q psy6206 5 VGHCHPAVVKAACTQLALLN-TNNRFL------HDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARV-HTNND 76 (83)
Q Consensus 5 lGh~~p~i~~a~~~~~~~~~-~~~~~~------~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~-~~~r~ 76 (83)
.+--.+.+.+++.+.++... .+.... .+...++.+.+.+.++.+.+.+.|+++|+++++.+++.... ..++.
T Consensus 8 ~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~i~~t~~~t~a~~~al~~~~~~~~~~~ 87 (379)
T TIGR03402 8 TTRVDPEVLEAMLPYFTEYFGNPSSMHSFGGEVGKAVEEAREQVAKLLGAEPDEIIFTSGGTESDNTAIKSALAAQPEKR 87 (379)
T ss_pred CCCCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEeCcHHHHHHHHHHHHHHhcCCCC
Confidence 34457889999988876431 111111 23356677888888876667899999999999999997653 34444
Q ss_pred ceEE
Q psy6206 77 DVIT 80 (83)
Q Consensus 77 ~ii~ 80 (83)
.||.
T Consensus 88 ~vv~ 91 (379)
T TIGR03402 88 HIIT 91 (379)
T ss_pred eEEE
Confidence 5654
No 102
>TIGR00858 bioF 8-amino-7-oxononanoate synthase. This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model.
Probab=97.41 E-value=0.0033 Score=41.86 Aligned_cols=65 Identities=20% Similarity=0.116 Sum_probs=45.6
Q ss_pred cCCCC-CCHHHHHHHHHHHHhhcc-C--CC--C-cchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHH
Q psy6206 3 LPVGH-CHPAVVKAACTQLALLNT-N--NR--F-LHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLA 69 (83)
Q Consensus 3 ~~lGh-~~p~i~~a~~~~~~~~~~-~--~~--~-~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~a 69 (83)
.++|+ .+|++++++.++++.... . .. + .++...++.+.|.+.... +..++.++|++++..+++..
T Consensus 25 ~~~g~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~~~--~~~i~~~~G~~~~~~~l~~~ 96 (360)
T TIGR00858 25 DYLGLASHPEVIQAAQQGAEQYGAGSTASRLVSGNSPLHEELEEELAEWKGT--EAALLFSSGYLANVGVISAL 96 (360)
T ss_pred CcccCCCCHHHHHHHHHHHHhcCCCCCCcCcccCCcHHHHHHHHHHHHHhCC--CCEEEECchHHHHHHHHHHh
Confidence 35795 789999999999976421 1 11 1 235567788889887743 35666788899998877643
No 103
>PLN03032 serine decarboxylase; Provisional
Probab=97.30 E-value=0.0018 Score=44.70 Aligned_cols=71 Identities=11% Similarity=-0.065 Sum_probs=45.3
Q ss_pred CHHHHHHHHHHHHh-hccCCCC------cchHHHHHHHHHHhhCCCCCCeE--EeeCChHHHHHHHHHHHHhhcCCCceE
Q psy6206 9 HPAVVKAACTQLAL-LNTNNRF------LHDNLVLCARKLASLLPDPLSVC--FFVNSGSEANDLALRLARVHTNNDDVI 79 (83)
Q Consensus 9 ~p~i~~a~~~~~~~-~~~~~~~------~~~~~~~la~~l~~~~p~~~~~v--~f~~sGseA~e~Alk~ar~~~~r~~ii 79 (83)
++.+.+++.+.+.+ +..++.. ..+...+..+.+.+++..+.+.+ +|+++|||||-.|++.+|.+..+..|+
T Consensus 36 ~~~~~~~~~~~~~~~~gnP~s~~~~g~~a~~~e~~v~~~ia~llg~~~~~~~G~fTsGGTEaNl~al~~ar~~~~~~~vi 115 (374)
T PLN03032 36 DYGELSQLMKYSINNLGDPFIESNYGVHSRQFEVGVLDWFARLWELEKDEYWGYITTCGTEGNLHGILVGREVFPDGILY 115 (374)
T ss_pred ChHHHHHHHHhcccCCCCCcccCCCCccHHHHHHHHHHHHHHHhCCCCccCCEEEeCchHHHHHHHHHHHHHhCCCcEEE
Confidence 34566777666643 2111111 23445677788888876544444 999999999999999999764333343
No 104
>TIGR03235 DNA_S_dndA cysteine desulfurase DndA. This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase.
Probab=97.22 E-value=0.0075 Score=40.52 Aligned_cols=77 Identities=18% Similarity=0.157 Sum_probs=51.6
Q ss_pred CCCCCHHHHHHHHHHHHhhc-cCCC-Cc------chHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhh---c
Q psy6206 5 VGHCHPAVVKAACTQLALLN-TNNR-FL------HDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVH---T 73 (83)
Q Consensus 5 lGh~~p~i~~a~~~~~~~~~-~~~~-~~------~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~---~ 73 (83)
.|--++.+.+++.+.++... .+.. .. .+...++.+.|.+.+..+.+.+.|+++++++++.+++..... .
T Consensus 7 ~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~v~~~~g~t~a~~~~l~~l~~~~~~~ 86 (353)
T TIGR03235 7 TTPIDPAVAEAMLPWLLEEFGNPSSRTHEFGHNAKKAVERARKQVAEALGADTEEVIFTSGATESNNLAILGLARAGEQK 86 (353)
T ss_pred CCCCCHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEeCCHHHHHHHHHHHHHHhcccC
Confidence 44567899999998885531 1111 11 133567888888888665668999999999999999865432 3
Q ss_pred CCCceEEe
Q psy6206 74 NNDDVITQ 81 (83)
Q Consensus 74 ~r~~ii~~ 81 (83)
|+..||+.
T Consensus 87 g~~~vi~~ 94 (353)
T TIGR03235 87 GKKHIITS 94 (353)
T ss_pred CCCeeeEc
Confidence 44556653
No 105
>PLN02651 cysteine desulfurase
Probab=97.14 E-value=0.0048 Score=41.76 Aligned_cols=76 Identities=20% Similarity=0.209 Sum_probs=50.2
Q ss_pred CCCCHHHHHHHHHHHHhhc-cCCC--C-----cchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhh--cCC
Q psy6206 6 GHCHPAVVKAACTQLALLN-TNNR--F-----LHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVH--TNN 75 (83)
Q Consensus 6 Gh~~p~i~~a~~~~~~~~~-~~~~--~-----~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~--~~r 75 (83)
+--.+++.+++.+.+.... .+.. . ..+...++.+.+.+++..+.+.+.|+++|||++..+++.+... ...
T Consensus 9 ~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~v~~t~~~t~a~~~~l~~~~~~~~~~g 88 (364)
T PLN02651 9 TPIDPRVLDAMLPFLIEHFGNPHSRTHLYGWESEDAVEKARAQVAALIGADPKEIIFTSGATESNNLAIKGVMHFYKDKK 88 (364)
T ss_pred CCCCHHHHHHHHHHHHhCCCCCChhhhHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEeCCHHHHHHHHHHHHHHhccCCC
Confidence 3456889999988775431 1111 1 1233567778888888665678999999999999999876432 223
Q ss_pred CceEEe
Q psy6206 76 DDVITQ 81 (83)
Q Consensus 76 ~~ii~~ 81 (83)
.+||+.
T Consensus 89 ~~vl~~ 94 (364)
T PLN02651 89 KHVITT 94 (364)
T ss_pred CEEEEc
Confidence 456653
No 106
>PRK05937 8-amino-7-oxononanoate synthase; Provisional
Probab=97.08 E-value=0.0099 Score=40.45 Aligned_cols=72 Identities=19% Similarity=0.116 Sum_probs=47.9
Q ss_pred CCCC-CHHHHHHHHHHHHhh---------ccCCCC----cchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHH
Q psy6206 5 VGHC-HPAVVKAACTQLALL---------NTNNRF----LHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLAR 70 (83)
Q Consensus 5 lGh~-~p~i~~a~~~~~~~~---------~~~~~~----~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar 70 (83)
||++ +|++.+++.+++++. +..+.- .++...++.++|.+.++. +.+++.+||+.|+-. +..
T Consensus 15 L~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~gs~~~~g~~~~~~~~e~~la~~~~~--~~~l~~~sG~~a~~~---~~~ 89 (370)
T PRK05937 15 LGFSRSDTLVHEVEKRYRLYCRQFPHAQLGYGGSRAILGPSSLLDDLEHKIAHFHGA--PEAFIVPSGYMANLG---LCA 89 (370)
T ss_pred cCCCCCHHHHHHHHHHHHHhccccCCCCCCCCCcCcccCChHHHHHHHHHHHHHhCC--CeEEEECChHHHHHH---HHH
Confidence 5654 799999998888764 111111 346678899999999965 467888999988843 333
Q ss_pred hhcCCCceEEe
Q psy6206 71 VHTNNDDVITQ 81 (83)
Q Consensus 71 ~~~~r~~ii~~ 81 (83)
.+.++..+|..
T Consensus 90 ~~~~~~d~ii~ 100 (370)
T PRK05937 90 HLSSVTDYVLW 100 (370)
T ss_pred HhCCCCCEEEE
Confidence 34445556554
No 107
>TIGR02006 IscS cysteine desulfurase IscS. This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors.
Probab=96.90 E-value=0.0093 Score=40.98 Aligned_cols=65 Identities=15% Similarity=0.151 Sum_probs=45.1
Q ss_pred CCCHHHHHHHHHHHHhhc-cCCC-C------cchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHh
Q psy6206 7 HCHPAVVKAACTQLALLN-TNNR-F------LHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARV 71 (83)
Q Consensus 7 h~~p~i~~a~~~~~~~~~-~~~~-~------~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~ 71 (83)
--+|.+.+++.+.++... .+.. . ..+...++.+.|.+.++.+.+.++|+++|+|+++.+++....
T Consensus 14 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~v~~~~g~t~a~~~~l~~l~~ 86 (402)
T TIGR02006 14 PVDPRVAEKMMPYLTEKFGNPASRSHSFGWEAEEAVENARNQVAELIGADSREIVFTSGATESNNLAIKGIAH 86 (402)
T ss_pred CCCHHHHHHHHHHHHhcCCCCChhhhHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEeCCHHHHHHHHHHHHHH
Confidence 347889999988775431 1111 0 113345667778888876567899999999999999986653
No 108
>PRK02948 cysteine desulfurase; Provisional
Probab=96.82 E-value=0.036 Score=37.60 Aligned_cols=67 Identities=13% Similarity=0.186 Sum_probs=46.7
Q ss_pred CCCCCCHHHHHHHHHHHHhhcc--CCCC-----cchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHH
Q psy6206 4 PVGHCHPAVVKAACTQLALLNT--NNRF-----LHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLAR 70 (83)
Q Consensus 4 ~lGh~~p~i~~a~~~~~~~~~~--~~~~-----~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar 70 (83)
..|.-.+.+.+++.+.++.... .+.. ..+...++.+.+.+.+..+.+.|+|+++++|++..+++...
T Consensus 8 ~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~i~~~~g~t~a~~~~~~~~~ 81 (381)
T PRK02948 8 ATTPMSKEALQTYQKAASQYFGNESSLHDIGGTASSLLQVCRKTFAEMIGGEEQGIYFTSGGTESNYLAIQSLL 81 (381)
T ss_pred CCCCCCHHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEeCcHHHHHHHHHHHHH
Confidence 3455678899999888765311 1111 12345667777888876556789999999999999988654
No 109
>PRK06225 aspartate aminotransferase; Provisional
Probab=96.76 E-value=0.019 Score=39.04 Aligned_cols=61 Identities=11% Similarity=-0.000 Sum_probs=43.9
Q ss_pred CCHHHHHHHHHHHHhhccCCCCcc-hHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHH
Q psy6206 8 CHPAVVKAACTQLALLNTNNRFLH-DNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLA 69 (83)
Q Consensus 8 ~~p~i~~a~~~~~~~~~~~~~~~~-~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~a 69 (83)
.+|.+.+++.+.+..... ..++. ....++.+.+++.++.+.+.+.++++|++++..+++..
T Consensus 42 ~~~~~~~a~~~~~~~~~~-~~y~~~~g~~~lr~~ia~~l~~~~~~v~~~~g~t~al~~~~~~~ 103 (380)
T PRK06225 42 PHEEVREAMIRCIEEGEY-CKYPPPEGFPELRELILKDLGLDDDEALITAGATESLYLVMRAF 103 (380)
T ss_pred CCHHHHHHHHHHHhcCCC-CCCCCCcchHHHHHHHHHhcCCCCCcEEEeCCHHHHHHHHHHHh
Confidence 478899999888865321 22322 22456778888877655568999999999999999864
No 110
>PRK06939 2-amino-3-ketobutyrate coenzyme A ligase; Provisional
Probab=96.69 E-value=0.034 Score=37.64 Aligned_cols=64 Identities=23% Similarity=0.118 Sum_probs=44.3
Q ss_pred CCCC-CCHHHHHHHHHHHHhh-ccC--CC---CcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHH
Q psy6206 4 PVGH-CHPAVVKAACTQLALL-NTN--NR---FLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLA 69 (83)
Q Consensus 4 ~lGh-~~p~i~~a~~~~~~~~-~~~--~~---~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~a 69 (83)
.+|| .+|++.+++.++++.. +.. .. ...+...++++.+.+..+. +...+.++|+++++.+++..
T Consensus 52 ~~~~~~~~~i~~a~~~~~~~~~~~~~~~~~~~G~~~l~~~l~~~la~~~g~--~~~i~~tsG~~a~~~~~~~l 122 (397)
T PRK06939 52 YLGLANHPELIAAAKAALDSHGFGMASVRFICGTQDLHKELEEKLAKFLGT--EDAILYSSCFDANGGLFETL 122 (397)
T ss_pred ccccCCCHHHHHHHHHHHHHcCCCCcccccccCCcHHHHHHHHHHHHHhCC--CcEEEEcChHHHHHHHHHHh
Confidence 3688 6899999999998764 211 11 1234557788888887753 34566677899999988753
No 111
>PF00266 Aminotran_5: Aminotransferase class-V; InterPro: IPR000192 Aminotransferases share certain mechanistic features with other pyridoxal- phosphate dependent enzymes, such as the covalent binding of the pyridoxal- phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. This entry represents the class V aminotransferases and the related, though functionally distinct, cysteine desulfurases.; GO: 0008152 metabolic process; PDB: 3FFR_A 1N2T_B 1ELQ_A 1N31_A 1ELU_B 1QZ9_A 1VJO_A 3ISL_B 1BJO_B 1BJN_B ....
Probab=96.61 E-value=0.018 Score=39.04 Aligned_cols=78 Identities=21% Similarity=0.205 Sum_probs=52.3
Q ss_pred CCCCCCHHHHHHHHHHHHhhc-cC--CC-C----cchHHHHHHHHHHhhCCCCC-CeEEeeCChHHHHHHHHHHHHh-hc
Q psy6206 4 PVGHCHPAVVKAACTQLALLN-TN--NR-F----LHDNLVLCARKLASLLPDPL-SVCFFVNSGSEANDLALRLARV-HT 73 (83)
Q Consensus 4 ~lGh~~p~i~~a~~~~~~~~~-~~--~~-~----~~~~~~~la~~l~~~~p~~~-~~v~f~~sGseA~e~Alk~ar~-~~ 73 (83)
..|...+.+.+++.+.+.... .+ .. . ..+...++.+.+.++++.+. +.|.|+.+++++++.++.-.+. +.
T Consensus 7 ~~~~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~lg~~~~~~v~~~~~~t~a~~~~~~~l~~~~~ 86 (371)
T PF00266_consen 7 GTGPMPKSVLEAISDYLRNFYANPHSGVSHRSREFAEILEEAREALAKLLGAPPDEEVVFTSNGTEALNAVASSLLNPLK 86 (371)
T ss_dssp SS-B-BHHHHHHHHHHHHHSGSSTSTSSSTTSHHHHHHHHHHHHHHHHHHTSSTTEEEEEESSHHHHHHHHHHHHHHHGT
T ss_pred CccCCCHHHHHHHHHHHHHhhhcCcccccchhhhhhHHHHHHHHHHHHhcCCccccccccccccchhhhhhhhccccccc
Confidence 345667889999999887652 11 11 1 12344677777888877655 6899999999999999986643 44
Q ss_pred CCCceEEe
Q psy6206 74 NNDDVITQ 81 (83)
Q Consensus 74 ~r~~ii~~ 81 (83)
...+|+..
T Consensus 87 ~g~~vl~~ 94 (371)
T PF00266_consen 87 PGDEVLVT 94 (371)
T ss_dssp TTCEEEEE
T ss_pred cccccccc
Confidence 44566654
No 112
>TIGR03576 pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 family. Members of this archaeal protein family are pyridoxal phosphate enzymes of unknown function. Sequence similarity to SelA, a bacterial enzyme of selenocysteine biosynthesis, has led to some members being misannotated as functionally equivalent, but selenocysteine is made on tRNA in Archaea by a two-step process that does not involve a SelA homolog.
Probab=96.59 E-value=0.02 Score=38.99 Aligned_cols=57 Identities=11% Similarity=-0.193 Sum_probs=46.5
Q ss_pred CCHHHHHHHHHHHHhhccCCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHH
Q psy6206 8 CHPAVVKAACTQLALLNTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRL 68 (83)
Q Consensus 8 ~~p~i~~a~~~~~~~~~~~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ 68 (83)
+||+|.++..+.+++.. .+++...+|.+.|.+..+.+.+.++.++||++|+..++..
T Consensus 34 ~~~~~~~~~~~~~~~~~----g~~~~~~~Le~~lA~~~g~~~e~ilv~~gg~~a~~~~~~a 90 (346)
T TIGR03576 34 GGFKIDEEDLELLETYV----GPAIFEEKVQELGREHLGGPEEKILVFNRTSSAILATILA 90 (346)
T ss_pred CChhHHHHHHHHHHHhc----CCHHHHHHHHHHHHHHcCCCcceEEEECCHHHHHHHHHHH
Confidence 58999999999887751 2446778899999998865557999999999999988863
No 113
>TIGR01788 Glu-decarb-GAD glutamate decarboxylase. This model represents the pyridoxal phosphate-dependent glutamate (alpha) decarboxylase found in bacteria (low and hi-GC gram positive, proteobacteria and cyanobacteria), plants, fungi and at least one archaon (Methanosarcina). The product of the enzyme is gamma-aminobutyrate (GABA).
Probab=96.52 E-value=0.018 Score=40.51 Aligned_cols=65 Identities=17% Similarity=-0.001 Sum_probs=43.7
Q ss_pred CCCHHHHHHHHHHHHhh-ccC--CCCcchHHHHHHHHHHhhCCCC-C-CeEEe--eCChHHHHHHHHHHHHh
Q psy6206 7 HCHPAVVKAACTQLALL-NTN--NRFLHDNLVLCARKLASLLPDP-L-SVCFF--VNSGSEANDLALRLARV 71 (83)
Q Consensus 7 h~~p~i~~a~~~~~~~~-~~~--~~~~~~~~~~la~~l~~~~p~~-~-~~v~f--~~sGseA~e~Alk~ar~ 71 (83)
..+|++.+++.+.+... ..+ .....+...+..+.+.+.++.+ . +.+.| +++|||||..|++.+|.
T Consensus 52 ~~~p~~~~~~~~~l~~~~~np~s~~~~~~le~~~~~~la~llg~~~~~~~~~g~~TsGgTEAn~~al~~ar~ 123 (431)
T TIGR01788 52 WMEPEARKLMDETINKNMIDKDEYPQTAEIENRCVNMLADLWHAPAKDAEAVGTSTIGSSEAIMLGGLAMKW 123 (431)
T ss_pred CCCHHHHHHHHHHHhcCCCCcccCccHHHHHHHHHHHHHHHhCCCCCCCCCeEEEechHHHHHHHHHHHHHH
Confidence 34788999988888643 111 1122355566777788887543 2 34555 79999999999998873
No 114
>cd06502 TA_like Low-specificity threonine aldolase (TA). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway.
Probab=96.45 E-value=0.032 Score=36.98 Aligned_cols=61 Identities=23% Similarity=0.187 Sum_probs=43.5
Q ss_pred CCCCCCHHHHHHHHHHHHhhccCCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHH
Q psy6206 4 PVGHCHPAVVKAACTQLALLNTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLA 69 (83)
Q Consensus 4 ~lGh~~p~i~~a~~~~~~~~~~~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~a 69 (83)
++| .+|.+.+++.+.+... ....+.+...++.+.+.+... .+.+.++++|+|++..++...
T Consensus 7 ~~~-~~~~v~~a~~~~~~~~--~~~~~~~~~~~l~~~~a~~~g--~~~~~~~~~gt~a~~~~~~~l 67 (338)
T cd06502 7 VTG-PTPEMLEAMAAANVGD--DVYGEDPTTAKLEARAAELFG--KEAALFVPSGTAANQLALAAH 67 (338)
T ss_pred CCC-CCHHHHHHHHhcccCC--cccCCCHHHHHHHHHHHHHhC--CCeEEEecCchHHHHHHHHHh
Confidence 455 6788999987755321 111234556788888888875 457889999999999988754
No 115
>PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional
Probab=96.41 E-value=0.05 Score=37.31 Aligned_cols=63 Identities=14% Similarity=0.039 Sum_probs=45.2
Q ss_pred CCCCCHHHHHHHHHHHHhhccC-C---C---CcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHH
Q psy6206 5 VGHCHPAVVKAACTQLALLNTN-N---R---FLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLA 69 (83)
Q Consensus 5 lGh~~p~i~~a~~~~~~~~~~~-~---~---~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~a 69 (83)
+|.-.+.+++++.+.......+ + . ...+...++.+.+.+.++ .+.++|+++|++++..+++..
T Consensus 29 ~~p~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lA~~~g--~~~~~~~~g~t~a~~~al~~l 98 (387)
T PRK09331 29 GGILTPEARKALIEYGDGYSVCDYCPGRLDQIKKPPIADFHEDLAEFLG--MDEARVTHGAREGKFAVMHSL 98 (387)
T ss_pred CCCCCHHHHHHHHHHHhccCCCcccccccccccChHHHHHHHHHHHHhC--CCcEEEeCCHHHHHHHHHHHh
Confidence 5677888999998877432111 1 1 123456788888999885 457889999999999999754
No 116
>PRK14012 cysteine desulfurase; Provisional
Probab=96.35 E-value=0.11 Score=35.77 Aligned_cols=65 Identities=15% Similarity=0.240 Sum_probs=44.3
Q ss_pred CCCCHHHHHHHHHHHH--hh-ccCCC------C-cchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHH
Q psy6206 6 GHCHPAVVKAACTQLA--LL-NTNNR------F-LHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLAR 70 (83)
Q Consensus 6 Gh~~p~i~~a~~~~~~--~~-~~~~~------~-~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar 70 (83)
+--++.+.+++.+++. .. ..... + ..+...++.+.+.+..+.+.+.+.|+++|+++++.+++...
T Consensus 13 ~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ia~~~g~~~~~v~~~~g~t~al~~~l~~l~ 87 (404)
T PRK14012 13 TPVDPRVAEKMMPYLTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLIGADPREIVFTSGATESDNLAIKGAA 87 (404)
T ss_pred CCCCHHHHHHHHHHHHhcccCcCCCchhhHHHHHHHHHHHHHHHHHHHHcCcCcCeEEEeCCHHHHHHHHHHHHH
Confidence 3456888999988775 21 11110 0 11334567778888887656679999999999999998654
No 117
>cd01494 AAT_I Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis
Probab=96.27 E-value=0.02 Score=33.76 Aligned_cols=44 Identities=36% Similarity=0.324 Sum_probs=32.7
Q ss_pred HHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhhcCCCceEE
Q psy6206 35 VLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVHTNNDDVIT 80 (83)
Q Consensus 35 ~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~~~r~~ii~ 80 (83)
.++.+.+.+.++.+.+.++|+++|++|++.+++..+.. +++|+.
T Consensus 3 ~~~~~~l~~~~~~~~~~~~~~~~~t~a~~~~~~~~~~~--~~~v~~ 46 (170)
T cd01494 3 EELEEKLARLLQPGNDKAVFVPSGTGANEAALLALLGP--GDEVIV 46 (170)
T ss_pred HHHHHHHHHHcCCCCCcEEEeCCcHHHHHHHHHHhCCC--CCEEEE
Confidence 46677788877555678999999999999999977532 334554
No 118
>TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase. This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function.
Probab=96.24 E-value=0.098 Score=35.56 Aligned_cols=63 Identities=24% Similarity=0.215 Sum_probs=43.6
Q ss_pred CCCCC-CHHHHHHHHHHHHhh-c--cCCCC---cchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHH
Q psy6206 4 PVGHC-HPAVVKAACTQLALL-N--TNNRF---LHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRL 68 (83)
Q Consensus 4 ~lGh~-~p~i~~a~~~~~~~~-~--~~~~~---~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ 68 (83)
.+|++ +|++++++.+++++. . ..+.+ ..+...++.+.+.+.+.. +.+..++||++|+..++..
T Consensus 48 ~lg~~~~~~v~~~~~~~~~~~~~~~~~s~~~~G~~~~~~~le~~ia~~~g~--~~~ii~~~~~~a~~~~~~~ 117 (393)
T TIGR01822 48 YLGLSSHPDLIQAAKDALDEHGFGMSSVRFICGTQDIHKELEAKIAAFLGT--EDTILYASCFDANGGLFET 117 (393)
T ss_pred ccccCCCHHHHHHHHHHHHHhCCCCCCcCcccCChHHHHHHHHHHHHHhCC--CcEEEECchHHHHHHHHHH
Confidence 36777 899999999999773 2 11221 134457788888888864 3555568999999977653
No 119
>PRK02769 histidine decarboxylase; Provisional
Probab=96.15 E-value=0.027 Score=39.00 Aligned_cols=49 Identities=22% Similarity=0.182 Sum_probs=34.8
Q ss_pred hHHHHHHHHHHhhCCCCCC--eEEeeCChHHHHHHHHHHHHhhcCCCceEE
Q psy6206 32 DNLVLCARKLASLLPDPLS--VCFFVNSGSEANDLALRLARVHTNNDDVIT 80 (83)
Q Consensus 32 ~~~~~la~~l~~~~p~~~~--~v~f~~sGseA~e~Alk~ar~~~~r~~ii~ 80 (83)
+...+..+.+.+++..+.+ ..+|+++|||||-.|+..+|.+.....|++
T Consensus 65 ~~e~~~~~~~a~l~g~~~~~~~G~~TsGgTean~~a~~~ar~~~~~~~ii~ 115 (380)
T PRK02769 65 DFERDVMNFFAELFKIPFNESWGYITNGGTEGNLYGCYLARELFPDGTLYY 115 (380)
T ss_pred HHHHHHHHHHHHHhCCCCCCCCEEEecChHHHHHHHHHHHHHhCCCcEEEe
Confidence 4456677777887754323 358999999999999999997654444544
No 120
>TIGR01437 selA_rel uncharacterized pyridoxal phosphate-dependent enzyme. This model describes a protein related to a number of pyridoxal phosphate-dependent enzymes, and in particular to selenocysteine synthase (SelA), which converts Ser to selenocysteine on its tRNA. While resembling SelA, this protein is found only in species that have a better candidate SelA or else lack the other genes (selB, selC, and selD) required for selenocysteine incorporation.
Probab=96.11 E-value=0.049 Score=37.21 Aligned_cols=60 Identities=15% Similarity=0.070 Sum_probs=46.3
Q ss_pred CCCCC--CHHHHHHHHHHHHhhccCCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHH
Q psy6206 4 PVGHC--HPAVVKAACTQLALLNTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLA 69 (83)
Q Consensus 4 ~lGh~--~p~i~~a~~~~~~~~~~~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~a 69 (83)
++|-+ .|++.+++.+.++.++ ...+...++.+.+.+..+ .+.++++++|++|+..+++..
T Consensus 19 ~~g~s~~~~~v~~a~~~~~~~~~----~~~~~~~~~~~~~a~~~g--~~~~~~~~g~t~al~~al~al 80 (363)
T TIGR01437 19 ILGVSTVSDEVADAQKRGAQNYF----EIKELVNKTGEYIANLLG--VEDAVIVSSASAGIAQSVAAV 80 (363)
T ss_pred cCCCCCCCHHHHHHHHHHHhcCC----CHHHHHHHHHHHHHHhhC--CCeEEEEcCHHHHHHHHHHHH
Confidence 56666 7899999999876532 123556778888888874 457899999999999999865
No 121
>PRK03158 histidinol-phosphate aminotransferase; Provisional
Probab=96.06 E-value=0.068 Score=36.00 Aligned_cols=58 Identities=19% Similarity=0.081 Sum_probs=38.7
Q ss_pred CCHHHHHHHHHHHHhhccCCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHH
Q psy6206 8 CHPAVVKAACTQLALLNTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRL 68 (83)
Q Consensus 8 ~~p~i~~a~~~~~~~~~~~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ 68 (83)
.+|.+.+++.+.++.+.. ++.....++.+.+.+....+.+.+++++++++++..+++.
T Consensus 43 ~~~~v~~a~~~~~~~~~~---~p~~g~~~lr~~ia~~~~~~~~~i~~t~G~~~~l~~~~~~ 100 (359)
T PRK03158 43 PSPKVKEAIAAHLDELAL---YPDGYAPELRTKVAKHLGVDEEQLLFGAGLDEVIQMISRA 100 (359)
T ss_pred CCHHHHHHHHHHHHHhhc---CCCCcHHHHHHHHHHHhCCCHHHEEECCCHHHHHHHHHHH
Confidence 378899999888766421 2222234555555555544456899999999999877664
No 122
>COG2008 GLY1 Threonine aldolase [Amino acid transport and metabolism]
Probab=96.03 E-value=0.034 Score=38.18 Aligned_cols=59 Identities=24% Similarity=0.298 Sum_probs=42.8
Q ss_pred CCHHHHHHHHHHHHhhccCCCCcc-hHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHH
Q psy6206 8 CHPAVVKAACTQLALLNTNNRFLH-DNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLAR 70 (83)
Q Consensus 8 ~~p~i~~a~~~~~~~~~~~~~~~~-~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar 70 (83)
.+|++.++|.+.-.... ..|.. +...++.+++.+++.. ..++|..|||.||..||...-
T Consensus 12 ~~~~m~eam~~a~~~~~--~~YG~D~~~~~~e~~~ae~~g~--~a~~Fv~sGT~aN~lal~~~~ 71 (342)
T COG2008 12 PTPEMREALAAANAVGD--DVYGEDPTTNALEQRIAELFGK--EAALFVPSGTQANQLALAAHC 71 (342)
T ss_pred CCHHHHHHHHhccccCC--CCCCCCHHHHHHHHHHHHHhCC--ceEEEecCccHHHHHHHHHhc
Confidence 47889888877443221 23333 4457788888888854 789999999999999998543
No 123
>cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase. This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface.
Probab=95.99 E-value=0.086 Score=35.61 Aligned_cols=62 Identities=13% Similarity=0.009 Sum_probs=45.3
Q ss_pred CCCCHHHHHHHHHHHHhhccC-------CCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHH
Q psy6206 6 GHCHPAVVKAACTQLALLNTN-------NRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLA 69 (83)
Q Consensus 6 Gh~~p~i~~a~~~~~~~~~~~-------~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~a 69 (83)
|+-.|.+.+++.+.......+ ....++...++.+.+.+.++. +.++++++|+++++.++...
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~--~~i~~~~g~t~al~~~l~~~ 79 (361)
T cd06452 11 GRLTPEARKALIEWGDGYSVCDFCRGRLDEIEKPPIKDFHHDLAEFLGM--DEARVTPGAREGKFAVMHSL 79 (361)
T ss_pred CCCCHHHHHHHHHHhcccCCccccccccccccCchHHHHHHHHHHHcCC--ceEEEeCCHHHHHHHHHHHh
Confidence 677888888888877443111 112235677888999998854 78999999999999988754
No 124
>TIGR01141 hisC histidinol-phosphate aminotransferase. Histidinol-phosphate aminotransferase is a pyridoxal-phosphate dependent enzyme.
Probab=95.91 E-value=0.06 Score=36.00 Aligned_cols=58 Identities=17% Similarity=0.143 Sum_probs=39.9
Q ss_pred CHHHHHHHHHHHHhhccCCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHH
Q psy6206 9 HPAVVKAACTQLALLNTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLA 69 (83)
Q Consensus 9 ~p~i~~a~~~~~~~~~~~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~a 69 (83)
+|++++++.+++.... .++.+...++.+.+++....+.+.+.+++++++++..+++..
T Consensus 34 ~~~~~~a~~~~~~~~~---~y~~~~~~~lr~~ia~~~~~~~~~i~~~~G~~~~l~~~~~~l 91 (346)
T TIGR01141 34 PPKAKEALRAEADKLH---RYPDPDPAELKQALADYYGVDPEQILLGNGSDEIIELLIRAF 91 (346)
T ss_pred CHHHHHHHHHhHHHhh---cCCCCCHHHHHHHHHHHhCcChHHEEEcCCHHHHHHHHHHHh
Confidence 6889999998875432 122222246667777766544568999999999998887653
No 125
>PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions. The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A ....
Probab=95.72 E-value=0.092 Score=35.75 Aligned_cols=64 Identities=20% Similarity=0.169 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHhhccCCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhhcCCCceE
Q psy6206 11 AVVKAACTQLALLNTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVHTNNDDVI 79 (83)
Q Consensus 11 ~i~~a~~~~~~~~~~~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~~~r~~ii 79 (83)
+..+++.+.++..... ...+...+|.+++.+.+ +..++..++||+.|...|++..-.-.|- .||
T Consensus 6 e~~~~v~~~l~s~~~~--~~g~~~~~fE~~~a~~~--g~~~~~~~~sgt~Al~~al~~l~~~~gd-eVi 69 (363)
T PF01041_consen 6 EEIDAVLEVLRSGWLS--TYGPYVEEFEKEFAEYF--GVKYAVAVSSGTSALHLALRALGLGPGD-EVI 69 (363)
T ss_dssp HHHHHHHHHHHHTCCS--SSSHHHHHHHHHHHHHH--TSSEEEEESSHHHHHHHHHHHTTGGTTS-EEE
T ss_pred HHHHHHHHHHHhCCcc--CCCHHHHHHHHHHHHHh--CCCeEEEeCChhHHHHHHHHhcCCCcCc-eEe
Confidence 3445555555553221 11467788999999999 4679999999999999999974433343 444
No 126
>cd00616 AHBA_syn 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn). AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein
Probab=95.71 E-value=0.064 Score=35.76 Aligned_cols=47 Identities=28% Similarity=0.330 Sum_probs=34.9
Q ss_pred chHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhhcCCCceEE
Q psy6206 31 HDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVHTNNDDVIT 80 (83)
Q Consensus 31 ~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~~~r~~ii~ 80 (83)
.+...++.+.|.+.++ .+.+.+++||++|++.+++..+...| .+||.
T Consensus 17 ~~~~~~~~~~la~~~~--~~~~~~~~sgt~al~~~l~~l~~~~g-d~vl~ 63 (352)
T cd00616 17 GPKVREFEKAFAEYLG--VKYAVAVSSGTAALHLALRALGIGPG-DEVIV 63 (352)
T ss_pred CHHHHHHHHHHHHHhC--CCeEEEECCHHHHHHHHHHHcCCCCC-CEEEe
Confidence 4567788889998885 35788899999999999987643333 34554
No 127
>cd06453 SufS_like Cysteine desulfurase (SufS)-like. This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine.
Probab=95.59 E-value=0.27 Score=33.19 Aligned_cols=66 Identities=18% Similarity=0.158 Sum_probs=43.5
Q ss_pred CCCCHHHHHHHHHHHHhhcc-CCC-Cc------chHHHHHHHHHHhhCCCC-CCeEEeeCChHHHHHHHHHHHHh
Q psy6206 6 GHCHPAVVKAACTQLALLNT-NNR-FL------HDNLVLCARKLASLLPDP-LSVCFFVNSGSEANDLALRLARV 71 (83)
Q Consensus 6 Gh~~p~i~~a~~~~~~~~~~-~~~-~~------~~~~~~la~~l~~~~p~~-~~~v~f~~sGseA~e~Alk~ar~ 71 (83)
|=-.|.+.+++.+.++.... +.. .. .....++.+.+.+.+..+ .+.++++++|+++++.+++....
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~g~t~a~~~~~~~l~~ 83 (373)
T cd06453 9 SQKPQPVIDAIVDYYRHYNANVHRGVHELSARATDAYEAAREKVARFINAPSPDEIIFTRNTTEAINLVAYGLGR 83 (373)
T ss_pred cCCCHHHHHHHHHHHHhcCCCCCCCccHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEeCCHHHHHHHHHHHhhh
Confidence 33457888888887755421 111 11 123355677788877644 56899999999999999976543
No 128
>PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases. It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B ....
Probab=95.55 E-value=0.043 Score=36.75 Aligned_cols=58 Identities=26% Similarity=0.328 Sum_probs=40.6
Q ss_pred CCHHHHHHHHHHHHhhccCCCCc-chHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHH
Q psy6206 8 CHPAVVKAACTQLALLNTNNRFL-HDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLAR 70 (83)
Q Consensus 8 ~~p~i~~a~~~~~~~~~~~~~~~-~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar 70 (83)
.+|++.+++.+ +...+. .|- .+...+|.+++.++++ .+.+.|+.||+-||..+++..-
T Consensus 7 ~~~~m~~a~~~-a~~gd~--~Yg~D~~~~~l~~~i~~l~g--~e~a~f~~sGT~An~~al~~~~ 65 (290)
T PF01212_consen 7 PTPAMLEAMAA-ANVGDD--AYGEDPTTARLEERIAELFG--KEAALFVPSGTMANQLALRAHL 65 (290)
T ss_dssp S-HHEEHHHHH-TTSB-C--CTTSSHHHHHHHHHHHHHHT--SSEEEEESSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHc-cccCCc--ccCCChhHHHHHHHHHHHcC--CCEEEEeCCCChHHHHHHHHHH
Confidence 56888888833 222222 233 4566889999999995 4577899999999999999554
No 129
>cd00611 PSAT_like Phosphoserine aminotransferase (PSAT) family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major group in this CD corresponds to phosphoserine aminotransferase (PSAT). PSAT is active as a dimer and catalyzes the conversion of phosphohydroxypyruvate to phosphoserine.
Probab=95.42 E-value=0.083 Score=35.90 Aligned_cols=60 Identities=13% Similarity=0.046 Sum_probs=40.0
Q ss_pred CHHHHHHHHHHHHhhc---cC----C---CCcchHHHHHHHHHHhhCCC-CCCeEEeeCC-hHHHHHHHHHH
Q psy6206 9 HPAVVKAACTQLALLN---TN----N---RFLHDNLVLCARKLASLLPD-PLSVCFFVNS-GSEANDLALRL 68 (83)
Q Consensus 9 ~p~i~~a~~~~~~~~~---~~----~---~~~~~~~~~la~~l~~~~p~-~~~~v~f~~s-GseA~e~Alk~ 68 (83)
+|.|.+++.+.+.... .. + ....+...+..+++.+++.. ..+.|.|+++ ||+|+|.++.-
T Consensus 11 p~~V~~a~~~~~~~~~~~~rg~~~~~~r~~~~~~~~~~~r~~l~~l~~~~~~~~vvf~~gs~T~a~~~~~~~ 82 (355)
T cd00611 11 PEEVLEQAQKELLDFNGLGMSVMEMSHRSKDFEAIVNEAESDLRELLNIPDNYKVLFLQGGATGQFAAVPLN 82 (355)
T ss_pred CHHHHHHHHHHHhhcccCCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCCchHHHHHHHHh
Confidence 5789999998875421 00 1 01124466778888888763 3457777755 99999998873
No 130
>PLN02721 threonine aldolase
Probab=95.31 E-value=0.13 Score=34.35 Aligned_cols=59 Identities=14% Similarity=0.142 Sum_probs=40.6
Q ss_pred CCHHHHHHHHHHHHhhccCCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHH
Q psy6206 8 CHPAVVKAACTQLALLNTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLAR 70 (83)
Q Consensus 8 ~~p~i~~a~~~~~~~~~~~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar 70 (83)
..|.+.+++.+. .......++++...+|.+.|.+.... +.+.++++|++++..++....
T Consensus 18 ~~~~~~~a~~~~--~~~~~~~~~~~~~~~l~~~la~~~~~--~~~~~~~~Gs~a~~~~l~~~~ 76 (353)
T PLN02721 18 PTDAMRAAMANA--EVDDDVLGYDPTALRLEEEMAKIFGK--EAALFVPSGTMGNLISVLVHC 76 (353)
T ss_pred CCHHHHHHHHhc--cCCCcccCCCHHHHHHHHHHHHHhCC--ceeEEecCccHHHHHHHHHHc
Confidence 467788887653 12111234456678899999998853 467889999999988887643
No 131
>PRK10874 cysteine sulfinate desulfinase; Provisional
Probab=95.29 E-value=0.48 Score=32.42 Aligned_cols=64 Identities=17% Similarity=0.153 Sum_probs=44.0
Q ss_pred CCCCHHHHHHHHHHHHhhcc-C--CCC-----cchHHHHHHHHHHhhCCC-CCCeEEeeCChHHHHHHHHHHH
Q psy6206 6 GHCHPAVVKAACTQLALLNT-N--NRF-----LHDNLVLCARKLASLLPD-PLSVCFFVNSGSEANDLALRLA 69 (83)
Q Consensus 6 Gh~~p~i~~a~~~~~~~~~~-~--~~~-----~~~~~~~la~~l~~~~p~-~~~~v~f~~sGseA~e~Alk~a 69 (83)
|--.+.+.+++.+.++.... . +.. ..+...++.+.+.+.... +.+.|.|+++++|+++.+++..
T Consensus 29 ~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~~i~~~~~~t~~i~~~~~~~ 101 (401)
T PRK10874 29 ALKPQAVIEATQQFYSLSAGNVHRSQFAAAQRLTARYEAAREQVAQLLNAPDAKNIVWTRGTTESINLVAQSY 101 (401)
T ss_pred cCCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCHHHHHHHHHHHh
Confidence 44457888888887765311 1 111 123456677788888875 5678999999999999988754
No 132
>TIGR03812 tyr_de_CO2_Arch tyrosine decarboxylase MnfA. Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions.
Probab=95.25 E-value=0.31 Score=32.81 Aligned_cols=64 Identities=28% Similarity=0.236 Sum_probs=42.8
Q ss_pred CCHHHHHHHHHHHHhh-ccCCCCc--chHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHh
Q psy6206 8 CHPAVVKAACTQLALL-NTNNRFL--HDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARV 71 (83)
Q Consensus 8 ~~p~i~~a~~~~~~~~-~~~~~~~--~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~ 71 (83)
.+|.+.+++.+.++.. .....++ .+...++.+.|.+.+..+.+.+.++++|++++..++...+.
T Consensus 32 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~~~~~g~~~~~~~~~~~~~~ 98 (373)
T TIGR03812 32 PHPIAVKAYDMFIETNLGDPGLFPGTKKIEEEVVGSLGNLLHLPDAYGYIVSGGTEANIQAVRAAKN 98 (373)
T ss_pred chHHHHHHHHHHhhcCCCCcccCccHHHHHHHHHHHHHHHhCCCCCCeEEeccHHHHHHHHHHHHHH
Confidence 4566777777665432 1112122 23347788888888865556788899999999999886654
No 133
>cd00609 AAT_like Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi
Probab=95.21 E-value=0.12 Score=33.94 Aligned_cols=40 Identities=23% Similarity=0.023 Sum_probs=27.6
Q ss_pred hHHHHHHHHHHhhC--CCCCCeEEeeCChHHHHHHHHHHHHh
Q psy6206 32 DNLVLCARKLASLL--PDPLSVCFFVNSGSEANDLALRLARV 71 (83)
Q Consensus 32 ~~~~~la~~l~~~~--p~~~~~v~f~~sGseA~e~Alk~ar~ 71 (83)
+....+++.+.... +.+.+.++++++|++++..+++....
T Consensus 40 ~l~~~l~~~l~~~~~~~~~~~~~~~~~~~t~a~~~~~~~~~~ 81 (350)
T cd00609 40 ELREAIAEWLGRRGGVDVPPEEIVVTNGAQEALSLLLRALLN 81 (350)
T ss_pred HHHHHHHHHHHHHhCCCCCcceEEEecCcHHHHHHHHHHhCC
Confidence 33455555555443 22356899999999999999997643
No 134
>TIGR01977 am_tr_V_EF2568 cysteine desulfurase family protein. This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown.
Probab=95.21 E-value=0.37 Score=32.50 Aligned_cols=60 Identities=20% Similarity=0.238 Sum_probs=40.9
Q ss_pred CHHHHHHHHHHHHhhc-c--CCCCc-----chHHHHHHHHHHhhCCCC-CCeEEeeCChHHHHHHHHHH
Q psy6206 9 HPAVVKAACTQLALLN-T--NNRFL-----HDNLVLCARKLASLLPDP-LSVCFFVNSGSEANDLALRL 68 (83)
Q Consensus 9 ~p~i~~a~~~~~~~~~-~--~~~~~-----~~~~~~la~~l~~~~p~~-~~~v~f~~sGseA~e~Alk~ 68 (83)
.+.+.+++.+.++... . .+.++ .+...++.+.+.+.+... .+.|+|+++|+++++.++..
T Consensus 13 p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~g~t~al~~~~~~ 81 (376)
T TIGR01977 13 PDEVYEAMADFYKNYGGSPGRGRYRLALRASREVEETRQLLAKLFNAPSSAHVVFTNNATTALNIALKG 81 (376)
T ss_pred CHHHHHHHHHHHHhcCCCCCcccchHHHHHHHHHHHHHHHHHHHhCcCCCCeEEEeCCHHHHHHHHHHh
Confidence 4678888888777642 1 11222 244567778888887543 34899999999999988764
No 135
>PLN00145 tyrosine/nicotianamine aminotransferase; Provisional
Probab=95.04 E-value=0.088 Score=36.78 Aligned_cols=66 Identities=20% Similarity=0.241 Sum_probs=39.7
Q ss_pred cCCCCCCH----------HHHHHHHHHHHhhccCCCCc-----chHHHHHHHHHHhhCC--CCCCeEEeeCChHHHHHHH
Q psy6206 3 LPVGHCHP----------AVVKAACTQLALLNTNNRFL-----HDNLVLCARKLASLLP--DPLSVCFFVNSGSEANDLA 65 (83)
Q Consensus 3 ~~lGh~~p----------~i~~a~~~~~~~~~~~~~~~-----~~~~~~la~~l~~~~p--~~~~~v~f~~sGseA~e~A 65 (83)
++||+++| ++.+++.+.++.... ..|+ .+....+++.+....+ -..+.|++++++++|++.+
T Consensus 55 i~l~~G~P~~~~~~~~~~~~~~a~~~al~~~~~-~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~v~it~G~~~al~l~ 133 (430)
T PLN00145 55 LPLGHGDPSAFPCFRTAPEAEDAVAAALRSGKY-NSYSTCVGLLPARRAIAEYLSRDLPYELSTDDIYLTAGCAQAIEII 133 (430)
T ss_pred eeCCCCCCCCCCCCCCCHHHHHHHHHHHHcCcC-CCCCCCccCHHHHHHHHHHHhhccCCCCChhhEEEeCCHHHHHHHH
Confidence 45676644 577888777764211 1121 2333445555543222 1346899999999999998
Q ss_pred HHHH
Q psy6206 66 LRLA 69 (83)
Q Consensus 66 lk~a 69 (83)
++..
T Consensus 134 ~~~l 137 (430)
T PLN00145 134 MSVL 137 (430)
T ss_pred HHHh
Confidence 8853
No 136
>PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=95.04 E-value=0.19 Score=35.37 Aligned_cols=51 Identities=16% Similarity=0.219 Sum_probs=36.9
Q ss_pred CCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhhcCCCceEE
Q psy6206 26 NNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVHTNNDDVIT 80 (83)
Q Consensus 26 ~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~~~r~~ii~ 80 (83)
++.+.++...+|.++|.++.+. ....|++||++|+..++... .-.|. +||+
T Consensus 58 y~R~~~p~~~~le~~lA~l~g~--~~av~~sSGt~Al~~al~~l-l~~Gd-~Vi~ 108 (433)
T PRK08134 58 YSRISNPTVAVLEERVAALEGG--VGAIATASGQAALHLAIATL-MGAGS-HIVA 108 (433)
T ss_pred eecCcChHHHHHHHHHHHHhCC--CcEEEeCCHHHHHHHHHHHH-hCCCC-EEEE
Confidence 3445667788999999998854 35799999999999998744 22343 4554
No 137
>TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA. Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems.
Probab=95.03 E-value=0.63 Score=31.83 Aligned_cols=77 Identities=18% Similarity=0.202 Sum_probs=48.0
Q ss_pred CCCCCHHHHHHHHHHHHhhc-cC--CCC-----cchHHHHHHHHHHhhCCCC-CCeEEeeCChHHHHHHHHHHHH--hhc
Q psy6206 5 VGHCHPAVVKAACTQLALLN-TN--NRF-----LHDNLVLCARKLASLLPDP-LSVCFFVNSGSEANDLALRLAR--VHT 73 (83)
Q Consensus 5 lGh~~p~i~~a~~~~~~~~~-~~--~~~-----~~~~~~~la~~l~~~~p~~-~~~v~f~~sGseA~e~Alk~ar--~~~ 73 (83)
.|--.+.+.+++.+.++... .. +.+ ..+...++.+.+.+.+... .+.|.|+++++|++..++.... .+.
T Consensus 25 ~~~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~~i~~t~g~t~~l~~~~~~~~~~~~~ 104 (398)
T TIGR03392 25 TALKPQAVIDATQQFYRLSSGTVHRSQHQQAQSLTARYELARQQVARFLNAPDAENIVWTRGTTESINLVAQSYARPRLQ 104 (398)
T ss_pred ccCCCHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEeCChHHHHHHHHHHhhhccCC
Confidence 34456788899888775431 11 111 1233456777888877653 5689999999999999887442 123
Q ss_pred CCCceEEe
Q psy6206 74 NNDDVITQ 81 (83)
Q Consensus 74 ~r~~ii~~ 81 (83)
...+||..
T Consensus 105 ~gd~Vl~~ 112 (398)
T TIGR03392 105 PGDEIIVS 112 (398)
T ss_pred CCCEEEEC
Confidence 23456553
No 138
>TIGR03403 nifS_epsilon cysteine desulfurase, NifS family, epsilon proteobacteria type. Members of this family are the NifS-like cysteine desulfurase of the epsilon division of the Proteobacteria, similar to the NifS protein of nitrogen-fixing bacteria. Like NifS, and unlike IscS, this protein is found as part of a system of just two proteins, a cysteine desulfurase and a scaffold, for iron-sulfur cluster biosynthesis. This protein is called NifS by Olsen, et al. (PubMed:11123951), so we use this designation.
Probab=95.00 E-value=0.56 Score=31.90 Aligned_cols=62 Identities=15% Similarity=0.119 Sum_probs=38.2
Q ss_pred CCHHHHHHHHHHHHhhcc-C-C--CCcc---hHHHHHHHHHHhhCCC-CCCeEEeeCChHHHHHHHHHHH
Q psy6206 8 CHPAVVKAACTQLALLNT-N-N--RFLH---DNLVLCARKLASLLPD-PLSVCFFVNSGSEANDLALRLA 69 (83)
Q Consensus 8 ~~p~i~~a~~~~~~~~~~-~-~--~~~~---~~~~~la~~l~~~~p~-~~~~v~f~~sGseA~e~Alk~a 69 (83)
-++.+.+++.+.++.... + . .++. +...+..+.+.+..+. +.+.|.|+++++|++..+++..
T Consensus 11 ~~~~v~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~i~~t~g~teal~~~~~~~ 80 (382)
T TIGR03403 11 LDPKVKELMDPFFCDIYGNPNSLHQFGTATHPAIAEALDKLYKGINARDLDDIIITSCATESNNWVLKGV 80 (382)
T ss_pred CCHHHHHHHHHHHHhcCcCCccccHHHHHHHHHHHHHHHHHHHHcCcCCCCeEEEeCCHHHHHHHHHHHH
Confidence 468899999888876421 1 1 1111 1222333333333432 3568999999999999999854
No 139
>PRK10534 L-threonine aldolase; Provisional
Probab=94.82 E-value=0.29 Score=32.60 Aligned_cols=69 Identities=16% Similarity=0.101 Sum_probs=46.9
Q ss_pred cCCCCCCHHHHHHHHHHHHhhccCCCC-cchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhhcCCCceE
Q psy6206 3 LPVGHCHPAVVKAACTQLALLNTNNRF-LHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVHTNNDDVI 79 (83)
Q Consensus 3 ~~lGh~~p~i~~a~~~~~~~~~~~~~~-~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~~~r~~ii 79 (83)
.+-| -+|.+.+++.+..... ..| +.+...+|.+.|.+.. +.+.+.++++|++++-.++.. ....|. +|+
T Consensus 8 ~~~~-p~~~~~~a~~~~~~~~---~~Y~~~~~~~~L~~~la~~~--g~~~~~v~~~g~~a~~~~l~~-~~~~gd-~vi 77 (333)
T PRK10534 8 TVTR-PSRAMLEAMMAAPVGD---DVYGDDPTVNALQDYAAELS--GKEAALFLPTGTQANLVALLS-HCERGE-EYI 77 (333)
T ss_pred cCCC-CCHHHHHHHHhccCCC---cccCCCHHHHHHHHHHHHHh--CCCeEEEeCchHHHHHHHHHH-hcCCCC-eeE
Confidence 3445 6788988887644332 334 5566788999999987 456678899999998887764 333444 444
No 140
>TIGR01326 OAH_OAS_sulfhy OAH/OAS sulfhydrylase. This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities.
Probab=94.81 E-value=0.22 Score=34.77 Aligned_cols=51 Identities=16% Similarity=0.215 Sum_probs=38.7
Q ss_pred CCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhhcCCCceEE
Q psy6206 26 NNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVHTNNDDVIT 80 (83)
Q Consensus 26 ~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~~~r~~ii~ 80 (83)
++.++++...+|.++|.++.+ .+.+.+++||++|+..++..... .|. +||+
T Consensus 51 ysr~~~p~~~~le~~lA~l~g--~~~~v~~~sG~~Ai~~al~~l~~-~Gd-~Vl~ 101 (418)
T TIGR01326 51 YSRLMNPTTDVLEQRIAALEG--GVAALAVASGQAAITYAILNLAQ-AGD-NIVS 101 (418)
T ss_pred eECCCChhHHHHHHHHHHHhC--CCeEEEEccHHHHHHHHHHHHhC-CCC-EEEE
Confidence 456677888899999999885 35789999999999999985432 233 4554
No 141
>TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase. This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis.
Probab=94.69 E-value=0.17 Score=34.80 Aligned_cols=42 Identities=17% Similarity=0.179 Sum_probs=33.9
Q ss_pred CCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHH
Q psy6206 26 NNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLA 69 (83)
Q Consensus 26 ~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~a 69 (83)
.+.+.++...+|.++|.+..+. +.+++++||++|+..+++..
T Consensus 48 y~r~~~p~~~~le~~la~l~g~--~~~~~~~sG~~Ai~~al~al 89 (380)
T TIGR01325 48 YSRYANPTVAAFEERIAALEGA--ERAVATATGMSAIQAALMTL 89 (380)
T ss_pred eecCCCchHHHHHHHHHHHhCC--CcEEEECCHHHHHHHHHHHH
Confidence 3556677788999999998743 57888999999999999743
No 142
>PRK09295 bifunctional cysteine desulfurase/selenocysteine lyase; Validated
Probab=94.57 E-value=0.89 Score=31.26 Aligned_cols=62 Identities=11% Similarity=0.075 Sum_probs=42.4
Q ss_pred CCCHHHHHHHHHHHHhhcc---CCCC-----cchHHHHHHHHHHhhCCC-CCCeEEeeCChHHHHHHHHHH
Q psy6206 7 HCHPAVVKAACTQLALLNT---NNRF-----LHDNLVLCARKLASLLPD-PLSVCFFVNSGSEANDLALRL 68 (83)
Q Consensus 7 h~~p~i~~a~~~~~~~~~~---~~~~-----~~~~~~~la~~l~~~~p~-~~~~v~f~~sGseA~e~Alk~ 68 (83)
--.+.+.+++.+.++.... .+.. ..+...++.+.|.+.+.. +.+.|.|+++++|++..+++.
T Consensus 34 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~~l~~~~~~ 104 (406)
T PRK09295 34 QKPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKQAALFINARSAEELVFVRGTTEGINLVANS 104 (406)
T ss_pred cCCHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHcCcCCCCeEEEeCCHHHHHHHHHHH
Confidence 3457888998888765321 1111 123356677778887764 456899999999999988874
No 143
>PRK15407 lipopolysaccharide biosynthesis protein RfbH; Provisional
Probab=94.54 E-value=0.4 Score=33.83 Aligned_cols=36 Identities=36% Similarity=0.344 Sum_probs=29.2
Q ss_pred hHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHH
Q psy6206 32 DNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLA 69 (83)
Q Consensus 32 ~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~a 69 (83)
+...+|.+.|.+.++ .+++++++||++|+..|++..
T Consensus 63 ~~~~~fe~~lA~~~g--~~~~v~~~sGt~al~~aL~al 98 (438)
T PRK15407 63 RFNDAFEKKLAEFLG--VRYALLVNSGSSANLLAFSAL 98 (438)
T ss_pred hhHHHHHHHHHHHhC--CCeEEEECCHHHHHHHHHHHH
Confidence 345678888888874 457999999999999999865
No 144
>PLN02187 rooty/superroot1
Probab=94.52 E-value=0.14 Score=36.21 Aligned_cols=66 Identities=18% Similarity=0.206 Sum_probs=40.0
Q ss_pred cCCCCCCH----------HHHHHHHHHHHhhccCCCC-cc----hHHHHHHHHHHhhCC--CCCCeEEeeCChHHHHHHH
Q psy6206 3 LPVGHCHP----------AVVKAACTQLALLNTNNRF-LH----DNLVLCARKLASLLP--DPLSVCFFVNSGSEANDLA 65 (83)
Q Consensus 3 ~~lGh~~p----------~i~~a~~~~~~~~~~~~~~-~~----~~~~~la~~l~~~~p--~~~~~v~f~~sGseA~e~A 65 (83)
.+||+++| ++.+++.+.++... ...| +. +....+++.+....+ -+.+.|+++++++++++.+
T Consensus 69 i~l~~Gdp~~~p~~~~~~~~~~~~~~~~~~~~-~~~Y~~~~G~~~lR~aiA~~~~~~~~~~~~~~~I~it~G~~~al~~~ 147 (462)
T PLN02187 69 LPLGHGDPSVYPCFRTCIEAEDAVVDVLRSGK-GNSYGPGAGILPARRAVADYMNRDLPHKLTPEDIFLTAGCNQGIEIV 147 (462)
T ss_pred EECCCCCCCCCCCCCCCHHHHHHHHHHHhCCC-CCCCCCCCChHHHHHHHHHHHHHhcCCCCCcccEEEeCCHHHHHHHH
Confidence 56777755 36777777665421 1122 11 233445555543322 2456899999999999998
Q ss_pred HHHH
Q psy6206 66 LRLA 69 (83)
Q Consensus 66 lk~a 69 (83)
+...
T Consensus 148 ~~~l 151 (462)
T PLN02187 148 FESL 151 (462)
T ss_pred HHHh
Confidence 8844
No 145
>PRK01533 histidinol-phosphate aminotransferase; Validated
Probab=94.48 E-value=0.23 Score=33.92 Aligned_cols=58 Identities=10% Similarity=0.032 Sum_probs=40.7
Q ss_pred CHHHHHHHHHHHHhhccCCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHH
Q psy6206 9 HPAVVKAACTQLALLNTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLA 69 (83)
Q Consensus 9 ~p~i~~a~~~~~~~~~~~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~a 69 (83)
+|++.+++.+.+... ..++.....+|.+.|.+....+.+.|.++++++|++..++...
T Consensus 44 ~~~v~~a~~~~~~~~---~~Yp~~g~~~Lr~aia~~~~~~~~~I~vt~Gs~e~i~~~~~~l 101 (366)
T PRK01533 44 SPRVLDELQKSWLDH---ALYPDGGATTLRQTIANKLHVKMEQVLCGSGLDEVIQIISRAV 101 (366)
T ss_pred CHHHHHHHHHHHHhc---CcCCCCCHHHHHHHHHHHhCCCcceEEECCCHHHHHHHHHHHh
Confidence 477888888766543 2233333456777777766555679999999999999888753
No 146
>PRK09105 putative aminotransferase; Provisional
Probab=94.47 E-value=0.55 Score=32.11 Aligned_cols=58 Identities=21% Similarity=0.057 Sum_probs=41.6
Q ss_pred CHHHHHHHHHHHHhhccCCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHH
Q psy6206 9 HPAVVKAACTQLALLNTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLA 69 (83)
Q Consensus 9 ~p~i~~a~~~~~~~~~~~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~a 69 (83)
+|.+.+++.+.+... ..|+.+...+|.+.+.+....+.+.|.+++++++++..++...
T Consensus 58 ~~~~~~a~~~~~~~~---~~Y~~~~~~~Lr~aia~~~~v~~e~I~it~Gs~~ai~~~~~~l 115 (370)
T PRK09105 58 SPAARDAAARSAALS---GRYDLELEDDLRTLFAAQEGLPADHVMAYAGSSEPLNYAVLAF 115 (370)
T ss_pred CHHHHHHHHHHHHHh---cCCCCchHHHHHHHHHHHhCcChhhEEEcCChHHHHHHHHHHH
Confidence 577888888766542 2343333567777777776555678999999999999888743
No 147
>COG0076 GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism]
Probab=94.47 E-value=0.27 Score=35.03 Aligned_cols=42 Identities=31% Similarity=0.221 Sum_probs=32.0
Q ss_pred hHHHHHHHHHHhhCCC-CCCeEEeeCChHHHHHHHHHHHHhhc
Q psy6206 32 DNLVLCARKLASLLPD-PLSVCFFVNSGSEANDLALRLARVHT 73 (83)
Q Consensus 32 ~~~~~la~~l~~~~p~-~~~~v~f~~sGseA~e~Alk~ar~~~ 73 (83)
....++...+.+++.. ....-.|+++|||||..|+.++|..+
T Consensus 101 ~~E~~~v~~l~~l~~~~~~~~G~~t~GgTean~lal~aar~~~ 143 (460)
T COG0076 101 ELEERVVNMLSDLLGAPEEASGTFTSGGTEANLLALLAARERW 143 (460)
T ss_pred HHHHHHHHHHHHHhCCCCCCceEEEcChHHHHHHHHHHHHHHH
Confidence 4456677777777754 23356999999999999999998664
No 148
>TIGR01365 serC_2 phosphoserine aminotransferase, Methanosarcina type. This model represents a variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in a small number of distantly related species, including Caulobacter crescentus, Mesorhizobium loti, and the archaeon Methanosarcina barkeri.
Probab=94.30 E-value=0.1 Score=36.13 Aligned_cols=59 Identities=14% Similarity=0.145 Sum_probs=36.2
Q ss_pred CHH-HHHHHHHHHHhhccCCCCcchHHHHHHHHHHhhCC--CCCCeEEeeCChHHHHHHHHH
Q psy6206 9 HPA-VVKAACTQLALLNTNNRFLHDNLVLCARKLASLLP--DPLSVCFFVNSGSEANDLALR 67 (83)
Q Consensus 9 ~p~-i~~a~~~~~~~~~~~~~~~~~~~~~la~~l~~~~p--~~~~~v~f~~sGseA~e~Alk 67 (83)
+|. +.+++.+++-..++-+..+.+...+..+.|.+++. .+.+-++++.|||.++|+++.
T Consensus 15 ~~~~~~~~~~~~~~~~~HRs~~F~~i~~e~~~~L~~l~~~~~~~~v~~l~GsGT~a~Eaa~~ 76 (374)
T TIGR01365 15 RPGWSIEELKNAPLGRSHRSKLGKEKLAEAIKKTREMLGVPADYLIGIVPASDTGAVEMALW 76 (374)
T ss_pred CchhhHHHHhhhhcccCcCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEECCchHHHHHHHHH
Confidence 466 56666654443322222334555666677777664 333346778999999999997
No 149
>PRK03080 phosphoserine aminotransferase; Provisional
Probab=94.28 E-value=0.2 Score=34.42 Aligned_cols=59 Identities=19% Similarity=0.050 Sum_probs=37.6
Q ss_pred CHH-HHHHHHHHHHhh-ccCCCCcchHHHHHHHHHHhhCCC-CCCeEEeeC-ChHHHHHHHHHH
Q psy6206 9 HPA-VVKAACTQLALL-NTNNRFLHDNLVLCARKLASLLPD-PLSVCFFVN-SGSEANDLALRL 68 (83)
Q Consensus 9 ~p~-i~~a~~~~~~~~-~~~~~~~~~~~~~la~~l~~~~p~-~~~~v~f~~-sGseA~e~Alk~ 68 (83)
+|+ |.+++.+..... |. ...+.+...+..+.|.+++.. +.+.|.|+. |||+++|.++.-
T Consensus 24 ~~~~v~~a~~~~~~~~~hr-~~~f~~~~~~~r~~l~~l~~~~~~~~v~~~~gs~T~~~~~~~~~ 86 (378)
T PRK03080 24 RPGWQLEALADALLGRSHR-QKPVKALLKRVIEGTRELLSLPEGYEVGIVPGSDTGAWEMALWS 86 (378)
T ss_pred ChHHHHHHHHhhhcccCcC-CHHHHHHHHHHHHHHHHHhCCCCCceEEEECCchHHHHHHHHHh
Confidence 467 888877543321 22 112245556777777777753 234687775 999999999863
No 150
>TIGR01366 serC_3 phosphoserine aminotransferase, putative. This model represents a putative variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in Mycobacterium tuberculosis and related high-GC Gram-positive bacteria.
Probab=94.25 E-value=0.15 Score=34.82 Aligned_cols=59 Identities=15% Similarity=-0.030 Sum_probs=38.4
Q ss_pred CHHHHHHHHHHHHhhc---cCCCCcchHHHHHHHHHHhhCCC-CCCeEEee-CChHHHHHHHHH
Q psy6206 9 HPAVVKAACTQLALLN---TNNRFLHDNLVLCARKLASLLPD-PLSVCFFV-NSGSEANDLALR 67 (83)
Q Consensus 9 ~p~i~~a~~~~~~~~~---~~~~~~~~~~~~la~~l~~~~p~-~~~~v~f~-~sGseA~e~Alk 67 (83)
+|+|.+++.++...+. +-+..+.+...+..+.+.+++.. +...|.|+ .|||.++|.++.
T Consensus 15 ~~~v~~a~~~~~~~~~~~~hr~~~f~~~~~~~r~~l~~l~~~~~~~~v~f~~gs~T~a~~~~~~ 78 (361)
T TIGR01366 15 RLEQLQALTTTAASLFGTSHRQAPVKNLVGRVREGLAELFSLPDGYEVILGNGGATAFWDAATF 78 (361)
T ss_pred CHHHHHHHHhcCccccccCcCChHHHHHHHHHHHHHHHHhCCCCCceEEEECCchhHHHHHHHH
Confidence 6888888776532221 11222345566777788887754 23467775 789999999996
No 151
>TIGR01979 sufS cysteine desulfurases, SufS subfamily. This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved.
Probab=94.22 E-value=1 Score=30.77 Aligned_cols=64 Identities=14% Similarity=0.080 Sum_probs=41.6
Q ss_pred CCCCHHHHHHHHHHHHhhc-cCC-C--Cc----chHHHHHHHHHHhhCCCC-CCeEEeeCChHHHHHHHHHHH
Q psy6206 6 GHCHPAVVKAACTQLALLN-TNN-R--FL----HDNLVLCARKLASLLPDP-LSVCFFVNSGSEANDLALRLA 69 (83)
Q Consensus 6 Gh~~p~i~~a~~~~~~~~~-~~~-~--~~----~~~~~~la~~l~~~~p~~-~~~v~f~~sGseA~e~Alk~a 69 (83)
|--.+.+.+++.+.++... ... + .. .+...++.+.+.+.+..+ .+.++|+++++|++..++...
T Consensus 28 ~~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ia~~~~~~~~~~v~~~~g~t~~l~~~~~~~ 100 (403)
T TIGR01979 28 SQKPQQVIDAVAEYYRNSNANVHRGIHTLSVRATEAYEAVREKVAKFINAASDEEIVFTRGTTESINLVAYSW 100 (403)
T ss_pred cCCCHHHHHHHHHHHHhCCCCCCCCccHHHHHHHHHHHHHHHHHHHHhCcCCCCeEEEeCCHHHHHHHHHHHh
Confidence 3345778888887765431 111 1 11 123456777788877644 468999999999999888743
No 152
>PLN02955 8-amino-7-oxononanoate synthase
Probab=94.18 E-value=0.4 Score=34.47 Aligned_cols=59 Identities=22% Similarity=0.205 Sum_probs=45.7
Q ss_pred CCHHHHHHHHHHHHhhcc---CCC---CcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHH
Q psy6206 8 CHPAVVKAACTQLALLNT---NNR---FLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRL 68 (83)
Q Consensus 8 ~~p~i~~a~~~~~~~~~~---~~~---~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ 68 (83)
+||+++++..+.+++..+ .+. ..+....+|-++|.+.. +.+.+.+.+||..||-.++..
T Consensus 117 ~~p~v~~a~~~ai~~yG~g~~gSrl~~G~~~~h~~LE~~LA~f~--g~e~all~sSGy~AN~~~i~a 181 (476)
T PLN02955 117 SHPTISNAAANAAKEYGMGPKGSALICGYTTYHRLLESSLADLK--KKEDCLVCPTGFAANMAAMVA 181 (476)
T ss_pred CCHHHHHHHHHHHHHcCCCCCCcCccccChHHHHHHHHHHHHHH--CCCcEEEECChHHHHHHHHHH
Confidence 589999999999988622 121 22455678999999988 456888999999999999874
No 153
>PRK07050 cystathionine beta-lyase; Provisional
Probab=94.15 E-value=0.35 Score=33.56 Aligned_cols=43 Identities=16% Similarity=0.010 Sum_probs=35.5
Q ss_pred cCCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHH
Q psy6206 25 TNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLA 69 (83)
Q Consensus 25 ~~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~a 69 (83)
.++.++++...+|.+++.++.+ .+.+.+++||++|+..++...
T Consensus 58 ~Y~r~~~pt~~~Le~~lA~l~g--~~~~l~~~sgt~Ai~~~l~al 100 (394)
T PRK07050 58 RYGLHATPTSLALAQRLAEIEG--GRHALLQPSGLAAISLVYFGL 100 (394)
T ss_pred ccCCCCCHHHHHHHHHHHHHhC--CCeEEEeccHHHHHHHHHHHH
Confidence 3566778888899999999875 458999999999999999744
No 154
>PLN02263 serine decarboxylase
Probab=94.08 E-value=0.54 Score=33.74 Aligned_cols=44 Identities=18% Similarity=0.052 Sum_probs=32.6
Q ss_pred hHHHHHHHHHHhhCCCCC--CeEEeeCChHHHHHHHHHHHHhhcCC
Q psy6206 32 DNLVLCARKLASLLPDPL--SVCFFVNSGSEANDLALRLARVHTNN 75 (83)
Q Consensus 32 ~~~~~la~~l~~~~p~~~--~~v~f~~sGseA~e~Alk~ar~~~~r 75 (83)
+...++.+.+.+++..+. ..-+++++|||||=.|+..||.+..+
T Consensus 133 ~~E~~Vi~wla~L~g~p~~~~~G~vtsGGTEaNL~Al~aARe~~~~ 178 (470)
T PLN02263 133 QFEVGVLDWFARLWEIEKNEYWGYITNCGTEGNLHGILVGREVFPD 178 (470)
T ss_pred HHHHHHHHHHHHHhCCCCCCCeEEEeCcHHHHHHHHHHHHHhhcCC
Confidence 344667777777774322 24688999999999999999987543
No 155
>PRK02731 histidinol-phosphate aminotransferase; Validated
Probab=94.07 E-value=0.66 Score=31.29 Aligned_cols=57 Identities=18% Similarity=0.116 Sum_probs=38.2
Q ss_pred CHHHHHHHHHHHHhhccCCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHH
Q psy6206 9 HPAVVKAACTQLALLNTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRL 68 (83)
Q Consensus 9 ~p~i~~a~~~~~~~~~~~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ 68 (83)
.|.+.+++.+.+..+. .++.+...+|.+.+++..+.+.+.|.+++++++++...+..
T Consensus 47 ~~~~~~a~~~~~~~~~---~y~~~~~~~lr~~ia~~~~~~~~~i~~t~G~~~~l~~~~~~ 103 (367)
T PRK02731 47 SPKAIEAIRAAADELH---RYPDGSGFELKAALAEKFGVDPERIILGNGSDEILELLARA 103 (367)
T ss_pred CHHHHHHHHHHHHhhc---CCCCCcHHHHHHHHHHHhCcCHHHEEEcCCHHHHHHHHHHH
Confidence 6778888888776542 22222234677777776654456899999999988776653
No 156
>PRK06108 aspartate aminotransferase; Provisional
Probab=93.95 E-value=0.99 Score=30.52 Aligned_cols=61 Identities=23% Similarity=0.064 Sum_probs=39.5
Q ss_pred CHHHHHHHHHHHHhhc--cC-CCCcchHHHHHHHHHHhhCC--CCCCeEEeeCChHHHHHHHHHHH
Q psy6206 9 HPAVVKAACTQLALLN--TN-NRFLHDNLVLCARKLASLLP--DPLSVCFFVNSGSEANDLALRLA 69 (83)
Q Consensus 9 ~p~i~~a~~~~~~~~~--~~-~~~~~~~~~~la~~l~~~~p--~~~~~v~f~~sGseA~e~Alk~a 69 (83)
.|.+.+++.+.+.... +. .....+....+++.+.+..+ ...+.++++++|++++..+++..
T Consensus 39 ~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~la~~~~~~~~~~~~~~~i~~t~g~~~al~~~~~~l 104 (382)
T PRK06108 39 PDFIRDAAAAALADGETFYTHNLGIPELREALARYVSRLHGVATPPERIAVTSSGVQALMLAAQAL 104 (382)
T ss_pred CHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCcCcceEEEeCChHHHHHHHHHHh
Confidence 4678888887765531 11 11123444666766655443 34568999999999999988854
No 157
>TIGR03301 PhnW-AepZ 2-aminoethylphosphonate aminotransferase. This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level alignment (TIGR02326). The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different.
Probab=93.89 E-value=0.41 Score=31.84 Aligned_cols=58 Identities=16% Similarity=0.137 Sum_probs=38.1
Q ss_pred CHHHHHHHHHHHHhhccCCCCcchHHHHHHHHHHhhCCCCC--CeEEeeCChHHHHHHHHHHH
Q psy6206 9 HPAVVKAACTQLALLNTNNRFLHDNLVLCARKLASLLPDPL--SVCFFVNSGSEANDLALRLA 69 (83)
Q Consensus 9 ~p~i~~a~~~~~~~~~~~~~~~~~~~~~la~~l~~~~p~~~--~~v~f~~sGseA~e~Alk~a 69 (83)
.|.+.+++.+... +....+ .+...++.+.|.+.+..+. ..+.++.+|+++++.++...
T Consensus 11 ~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~la~~~~~~~~~~~i~~~~~gt~~l~~~~~~~ 70 (355)
T TIGR03301 11 SATVRDAMLVDWC--HWDSEF-NDVTDQVRDRLLALAGGDDNHTCVLLQGSGTFAVEATIGSL 70 (355)
T ss_pred CHHHHHHhhhhcc--CCCHHH-HHHHHHHHHHHHHHhcCCCCCcEEEEeCCcHHHHHHHHHhc
Confidence 4666666655211 111122 3667788888888875433 36889999999999999754
No 158
>PRK00451 glycine dehydrogenase subunit 1; Validated
Probab=93.86 E-value=0.62 Score=32.46 Aligned_cols=46 Identities=13% Similarity=0.084 Sum_probs=30.7
Q ss_pred HHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhhcCCCceEEe
Q psy6206 35 VLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVHTNNDDVITQ 81 (83)
Q Consensus 35 ~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~~~r~~ii~~ 81 (83)
.++.+.+.++.+.+.+.+.++++|+++.+.++. ++.+..+.+|+..
T Consensus 115 ~e~~~~la~l~g~~~~~v~~~~g~t~~~~~~~~-a~~~~~g~~Vlv~ 160 (447)
T PRK00451 115 FEYQTMICELTGMDVANASMYDGATALAEAALM-AVRITKRKKVLVS 160 (447)
T ss_pred HHHHHHHHHHhCCCcceEEecCcHHHHHHHHHH-HHHhcCCCEEEEe
Confidence 344466677776556689999999998887664 4444344466654
No 159
>PRK03317 histidinol-phosphate aminotransferase; Provisional
Probab=93.85 E-value=0.3 Score=33.08 Aligned_cols=62 Identities=21% Similarity=0.171 Sum_probs=37.6
Q ss_pred CCHHHHHHHHHHHHhh-ccCCCCcchHHHHHHHHHHhhC------CCCCCeEEeeCChHHHHHHHHHHH
Q psy6206 8 CHPAVVKAACTQLALL-NTNNRFLHDNLVLCARKLASLL------PDPLSVCFFVNSGSEANDLALRLA 69 (83)
Q Consensus 8 ~~p~i~~a~~~~~~~~-~~~~~~~~~~~~~la~~l~~~~------p~~~~~v~f~~sGseA~e~Alk~a 69 (83)
..|.+.+++.+.+... .....|+.+....|.+.+.+.. +-+.++|+.+++++|++..+++..
T Consensus 40 ~~~~~~~al~~~l~~~~~~~~~Y~~~g~~~lr~aia~~~~~~~~~~~~~~~I~it~G~~~~l~~~~~~~ 108 (368)
T PRK03317 40 PSPALVADIAEAVAEAAAGLNRYPDRDAVALRADLAAYLTAQTGVGLTVENVWAANGSNEILQQLLQAF 108 (368)
T ss_pred CCHHHHHHHHHHHhhhhhhhccCCCCchHHHHHHHHHHhhhhccCCCChhhEEECCCHHHHHHHHHHHh
Confidence 3577899998887542 1112333222233444444433 334568999999999999888754
No 160
>PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional
Probab=93.82 E-value=0.62 Score=31.99 Aligned_cols=55 Identities=11% Similarity=-0.053 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHhhccCCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHH
Q psy6206 10 PAVVKAACTQLALLNTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLA 69 (83)
Q Consensus 10 p~i~~a~~~~~~~~~~~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~a 69 (83)
++-.+++.+.+.... ....+...+|.+.|.+.... +.+.+++||++|+..+++..
T Consensus 14 ~~e~~~~~~~l~~~~---~~~g~~~~~le~~la~~~g~--~~~v~~~sgt~al~lal~al 68 (379)
T PRK11658 14 DEELAAVKEVLRSGW---ITTGPKNQALEQAFCQLTGN--QHAIAVSSATAGMHITLMAL 68 (379)
T ss_pred HHHHHHHHHHHHcCC---ccCCHhHHHHHHHHHHHhCC--CeEEEECCHHHHHHHHHHHc
Confidence 344566666554431 12345567888888888853 46888999999999999754
No 161
>PLN03227 serine palmitoyltransferase-like protein; Provisional
Probab=93.75 E-value=1.1 Score=31.03 Aligned_cols=59 Identities=12% Similarity=0.175 Sum_probs=42.6
Q ss_pred CCHHHHHHHHHHHHhhc---cCC-C-Cc-chHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHH
Q psy6206 8 CHPAVVKAACTQLALLN---TNN-R-FL-HDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRL 68 (83)
Q Consensus 8 ~~p~i~~a~~~~~~~~~---~~~-~-~~-~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ 68 (83)
+||+++++..+.+++.. ..+ . +. .....+|.+++.++... +..++.+||.-|+-.++..
T Consensus 13 ~~~~~~~~~~~a~~~~g~~~~~sr~~yg~~~~~~~LE~~lA~~~g~--e~al~~~sG~~a~~~~i~~ 77 (392)
T PLN03227 13 SSPTLRQTALESLSHYGCGSCGPRGFYGTIDAHLELEQCMAEFLGT--ESAILYSDGASTTSSTVAA 77 (392)
T ss_pred CCHHHHHHHHHHHHHhCCCCcccccccCChHHHHHHHHHHHHHhCC--CcEEEecCcHHHHHHHHHH
Confidence 58999999999998741 111 1 21 34567899999998854 4677788998888877764
No 162
>PRK05355 3-phosphoserine/phosphohydroxythreonine aminotransferase; Provisional
Probab=93.71 E-value=0.27 Score=33.66 Aligned_cols=59 Identities=15% Similarity=0.022 Sum_probs=38.0
Q ss_pred CHHHHHHHHHHHHhh-------ccCCCC---cchHHHHHHHHHHhhCCC--CCCeEEeeCChHHHHHHHHH
Q psy6206 9 HPAVVKAACTQLALL-------NTNNRF---LHDNLVLCARKLASLLPD--PLSVCFFVNSGSEANDLALR 67 (83)
Q Consensus 9 ~p~i~~a~~~~~~~~-------~~~~~~---~~~~~~~la~~l~~~~p~--~~~~v~f~~sGseA~e~Alk 67 (83)
+|+|.+|+.+++... +..+.. +.+...+..++|.+++.. +.+-+++..||+.++|+++.
T Consensus 15 p~~V~~a~~~~~~~~~~~~~g~~~~~hr~~~f~~~~~~~~~~l~~l~~~~~~~~v~~~~gsgt~~~Ea~~~ 85 (360)
T PRK05355 15 PEEVLEQAQQELLDWNGSGMSVMEISHRSKEFEAVAEEAEADLRELLNIPDNYKVLFLQGGASLQFAMVPM 85 (360)
T ss_pred CHHHHHHHHHHhhccccCCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEcCCchHHHHHHHH
Confidence 588999998887431 111111 124567777778887753 22334566899999999986
No 163
>TIGR01976 am_tr_V_VC1184 cysteine desulfurase family protein, VC1184 subfamily. This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase.
Probab=93.69 E-value=0.77 Score=31.27 Aligned_cols=74 Identities=18% Similarity=0.131 Sum_probs=46.8
Q ss_pred CCHHHHHHHHHHHHhhcc-C-CCCc-----chHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHh-hcCCCceE
Q psy6206 8 CHPAVVKAACTQLALLNT-N-NRFL-----HDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARV-HTNNDDVI 79 (83)
Q Consensus 8 ~~p~i~~a~~~~~~~~~~-~-~~~~-----~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~-~~~r~~ii 79 (83)
-.+.+.+++.+.+..... . ..++ .+...++.+.+.+.+....+.|.|++++++++..++..... .....+||
T Consensus 29 ~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ia~~~~~~~~~v~~~~~~t~~l~~~~~~~~~~~~~gd~vl 108 (397)
T TIGR01976 29 IPQSVADAVSAALTRSNANRGGAYESSRRADQVVDDAREAVADLLNADPPEVVFGANATSLTFLLSRAISRRWGPGDEVI 108 (397)
T ss_pred CCHHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHcCCCCCeEEEeCCHHHHHHHHHHHHHhcCCCCCEEE
Confidence 467899999888765321 1 1121 13346788888888865445799999999998776654322 22223565
Q ss_pred Ee
Q psy6206 80 TQ 81 (83)
Q Consensus 80 ~~ 81 (83)
..
T Consensus 109 ~~ 110 (397)
T TIGR01976 109 VT 110 (397)
T ss_pred Ec
Confidence 53
No 164
>PRK14809 histidinol-phosphate aminotransferase; Provisional
Probab=93.66 E-value=0.43 Score=32.21 Aligned_cols=58 Identities=19% Similarity=0.158 Sum_probs=39.7
Q ss_pred CHHHHHHHHHHHHhhccCCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHH
Q psy6206 9 HPAVVKAACTQLALLNTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLA 69 (83)
Q Consensus 9 ~p~i~~a~~~~~~~~~~~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~a 69 (83)
.|++.+++.+.++... .|+.....+|.+.+.+..+-..+.+..++++++++..+++..
T Consensus 45 ~~~~~~~~~~~~~~~~---~Y~~~~~~~lr~~ia~~~~~~~~~I~it~G~~~al~~~~~~~ 102 (357)
T PRK14809 45 SPAAVEAIREAAERVH---SYPKASHADLTAALADRWDVSPEQVWLANGGDGALDYLARAM 102 (357)
T ss_pred CHHHHHHHHHHHhhhh---cCCCCCHHHHHHHHHHHhCCCcceEEECCCHHHHHHHHHHHh
Confidence 4678888877765432 223222346667777666555678999999999999887753
No 165
>PRK13034 serine hydroxymethyltransferase; Reviewed
Probab=93.60 E-value=0.58 Score=32.66 Aligned_cols=61 Identities=20% Similarity=0.189 Sum_probs=41.1
Q ss_pred CCCHHHHHHHHHHH-Hhhcc---CCCCc--chHHHHHHH----HHHhhCCCCCCeE-EeeCChHHHHHHHHHHH
Q psy6206 7 HCHPAVVKAACTQL-ALLNT---NNRFL--HDNLVLCAR----KLASLLPDPLSVC-FFVNSGSEANDLALRLA 69 (83)
Q Consensus 7 h~~p~i~~a~~~~~-~~~~~---~~~~~--~~~~~~la~----~l~~~~p~~~~~v-~f~~sGseA~e~Alk~a 69 (83)
|-||++.+++...+ .+... .+.+. ++...+|.+ ++.+.... +.+ ++.+||+.|+..++..-
T Consensus 39 ~~~p~v~~a~~~~~~~~~~~g~~gsr~~~G~~~~~~lE~~~~~~la~l~g~--~~alv~~~SG~~A~~~~l~al 110 (416)
T PRK13034 39 FTSPAVMEAQGSVLTNKYAEGYPGKRYYGGCEFVDEVEALAIERAKQLFGC--DYANVQPHSGSQANGAVYLAL 110 (416)
T ss_pred CCCHHHHHHhcchhhcCCCCCCCCCcccCCChHHHHHHHHHHHHHHHHhCC--CceEEecCCcHHHHHHHHHHh
Confidence 45899999998885 55421 12221 355566666 88888854 456 45799999999998753
No 166
>PRK14807 histidinol-phosphate aminotransferase; Provisional
Probab=93.56 E-value=0.9 Score=30.65 Aligned_cols=60 Identities=15% Similarity=0.019 Sum_probs=40.6
Q ss_pred CHHHHHHHHHHHHhhccCCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHH
Q psy6206 9 HPAVVKAACTQLALLNTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLA 69 (83)
Q Consensus 9 ~p~i~~a~~~~~~~~~~~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~a 69 (83)
.|.+.+++.+.+.... ...++.+...+|.+.+++..+.+.+.|.++++.++++..+++..
T Consensus 37 p~~~~~a~~~~~~~~~-~~~y~~~~~~~lr~~ia~~~~~~~~~i~it~G~~~~l~~~~~~l 96 (351)
T PRK14807 37 PEEVIKNIQEIVKSSQ-VNIYPDPTAEKLREELARYCSVVPTNIFVGNGSDEIIHLIMLAF 96 (351)
T ss_pred CHHHHHHHHHHhhcCc-ccCCCCccHHHHHHHHHHHhCCCcccEEEecCHHHHHHHHHHHh
Confidence 3678888877665321 12333333467778888777655678999999999998887753
No 167
>PLN02855 Bifunctional selenocysteine lyase/cysteine desulfurase
Probab=93.54 E-value=1.6 Score=30.28 Aligned_cols=63 Identities=21% Similarity=0.185 Sum_probs=41.6
Q ss_pred CCCCHHHHHHHHHHHHhhcc-C-C-C-Cc----chHHHHHHHHHHhhCCCC-CCeEEeeCChHHHHHHHHHH
Q psy6206 6 GHCHPAVVKAACTQLALLNT-N-N-R-FL----HDNLVLCARKLASLLPDP-LSVCFFVNSGSEANDLALRL 68 (83)
Q Consensus 6 Gh~~p~i~~a~~~~~~~~~~-~-~-~-~~----~~~~~~la~~l~~~~p~~-~~~v~f~~sGseA~e~Alk~ 68 (83)
|--.+.+.+++.+.++.... . . . +. .+...++.+.+.+.+... .+.|.|+++++|++..+++.
T Consensus 42 ~~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~al~~i~~~ 113 (424)
T PLN02855 42 SQKPAAVLDALQDYYEEYNSNVHRGIHALSAKATDAYELARKKVAAFINASTSREIVFTRNATEAINLVAYT 113 (424)
T ss_pred cCCCHHHHHHHHHHHHhcCCCCCCccchHHHHHHHHHHHHHHHHHHHcCCCCCCEEEEeCCHHHHHHHHHHH
Confidence 33456788888887765421 1 1 1 11 122356777888887653 46899999999999998873
No 168
>cd06450 DOPA_deC_like DOPA decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine.
Probab=93.32 E-value=0.45 Score=31.62 Aligned_cols=40 Identities=35% Similarity=0.264 Sum_probs=30.3
Q ss_pred hHHHHHHHHHHhhCCCC--CCeEEeeCChHHHHHHHHHHHHh
Q psy6206 32 DNLVLCARKLASLLPDP--LSVCFFVNSGSEANDLALRLARV 71 (83)
Q Consensus 32 ~~~~~la~~l~~~~p~~--~~~v~f~~sGseA~e~Alk~ar~ 71 (83)
+...++++.+.+.++.+ ...+.|+++|++|+..++..++.
T Consensus 38 ~le~~~~~~~~~~~g~~~~~~~~~~t~ggt~a~~~al~~~~~ 79 (345)
T cd06450 38 EMEAEVVNWLAKLFGLPSEDADGVFTSGGSESNLLALLAARD 79 (345)
T ss_pred HHHHHHHHHHHHHhCCCCCCCCEEEeCChhHHHHHHHHHHHH
Confidence 44566777777776432 34799999999999999998865
No 169
>TIGR02379 ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase. This family consists of TDP-4-keto-6-deoxy-D-glucose transaminases, the WecE (formerly RffA) protein of enterobacterial common antigen (ECA) biosynthesis, from enterobacteria. It also includes closely matching sequence from species not expected to make ECA, but which contain other genes for the biosynthesis of TDP-4-keto-6-deoxy-D-Glc, an intermediate in the biosynthesis of other compounds as well and the substrate of WecA. This family belongs to the DegT/DnrJ/EryC1/StrS aminotransferase family (pfam01041).
Probab=93.28 E-value=0.75 Score=31.70 Aligned_cols=56 Identities=11% Similarity=-0.026 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHhhccCCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHH
Q psy6206 10 PAVVKAACTQLALLNTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLA 69 (83)
Q Consensus 10 p~i~~a~~~~~~~~~~~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~a 69 (83)
++..+++.+.+......+ ..+...++.+.+.+.. +.+.+.+++||++|...+++..
T Consensus 11 ~~e~~a~~~~~~~~~~~~--~g~~~~~~e~~la~~~--g~~~~v~~~sgt~aL~~~l~al 66 (376)
T TIGR02379 11 GQELEYIAEAISEGKLSG--DGPFSRRCETWLENRT--GTKKALLTPSCTAALEMAALLL 66 (376)
T ss_pred HHHHHHHHHHHHcCCccC--CcHHHHHHHHHHHHHh--CCCeEEEeCCHHHHHHHHHHHc
Confidence 445666666665432111 1345677888888876 4568999999999999988754
No 170
>PRK00950 histidinol-phosphate aminotransferase; Validated
Probab=93.18 E-value=1.1 Score=30.19 Aligned_cols=58 Identities=17% Similarity=0.178 Sum_probs=36.8
Q ss_pred CHHHHHHHHHHHHhhccCCCCcchHHHHHHHHHHhhCCCCCCeEEee-CChHHHHHHHHHHH
Q psy6206 9 HPAVVKAACTQLALLNTNNRFLHDNLVLCARKLASLLPDPLSVCFFV-NSGSEANDLALRLA 69 (83)
Q Consensus 9 ~p~i~~a~~~~~~~~~~~~~~~~~~~~~la~~l~~~~p~~~~~v~f~-~sGseA~e~Alk~a 69 (83)
.|.+.+++.+.+.... .++.+...++.+.+.+..+.+.+.++++ ++.++++..+++..
T Consensus 49 ~~~~~~~~~~~~~~~~---~y~~~~~~~lr~~ia~~~~~~~~~i~~~~~Ga~~~i~~~~~~~ 107 (361)
T PRK00950 49 SPKAVEAIEKELSKIH---RYPEPDAPELREALSKYTGVPVENIIVGGDGMDEVIDTLMRTF 107 (361)
T ss_pred CHHHHHHHHHHHHhhc---CCCCCCHHHHHHHHHHHhCCCHHHEEEeCCCHHHHHHHHHHHh
Confidence 5788888877766542 2232223567777777765445688884 55567788777653
No 171
>PRK06358 threonine-phosphate decarboxylase; Provisional
Probab=93.16 E-value=0.59 Score=31.66 Aligned_cols=57 Identities=14% Similarity=0.124 Sum_probs=40.8
Q ss_pred CHHHHHHHHHHHHhhccCCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHH
Q psy6206 9 HPAVVKAACTQLALLNTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRL 68 (83)
Q Consensus 9 ~p~i~~a~~~~~~~~~~~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ 68 (83)
.|.+.+++.+.+..+. .++.+...+|.+.+++..+-+.+.+.+++++++++..+++.
T Consensus 34 p~~~~~a~~~~~~~~~---~Y~~~~~~~lr~~ia~~~~~~~~~i~it~Ga~~~l~~~~~~ 90 (354)
T PRK06358 34 PESLKQAITENLDKLV---EYPDPDYLELRKRIASFEQLDLENVILGNGATELIFNIVKV 90 (354)
T ss_pred CHHHHHHHHHHHHhhh---cCCCccHHHHHHHHHHHhCCChhhEEECCCHHHHHHHHHHH
Confidence 5778888888765442 23322245677777777655567999999999999998875
No 172
>cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis. This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life.
Probab=93.09 E-value=0.59 Score=31.93 Aligned_cols=42 Identities=21% Similarity=0.147 Sum_probs=33.8
Q ss_pred CCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHH
Q psy6206 26 NNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLA 69 (83)
Q Consensus 26 ~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~a 69 (83)
+..+.++...+|.++|.++.+. +.+++++||++|+..+++..
T Consensus 34 y~r~~~p~~~~le~~la~l~g~--~~a~~~~sG~~Ai~~~l~~l 75 (369)
T cd00614 34 YSRIGNPTVDALEKKLAALEGG--EAALAFSSGMAAISTVLLAL 75 (369)
T ss_pred eECCCChhHHHHHHHHHHHHCC--CCEEEEcCHHHHHHHHHHHH
Confidence 3455677788999999998853 57788899999999999854
No 173
>PRK07682 hypothetical protein; Validated
Probab=92.95 E-value=1 Score=30.63 Aligned_cols=59 Identities=20% Similarity=0.059 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHhh-c-cC-CCCcchHHHHHHHHHHhhCC--CCC-CeEEeeCChHHHHHHHHHHH
Q psy6206 11 AVVKAACTQLALL-N-TN-NRFLHDNLVLCARKLASLLP--DPL-SVCFFVNSGSEANDLALRLA 69 (83)
Q Consensus 11 ~i~~a~~~~~~~~-~-~~-~~~~~~~~~~la~~l~~~~p--~~~-~~v~f~~sGseA~e~Alk~a 69 (83)
.+.+++.+.++.. . +. .....+....+++.+.+..+ ... +.|+++++|++|++.+++..
T Consensus 37 ~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~~i~~t~G~~~al~~~~~~l 101 (378)
T PRK07682 37 NVREASIRSLEQGYTSYTANAGLLELRQEIAKYLKKRFAVSYDPNDEIIVTVGASQALDVAMRAI 101 (378)
T ss_pred HHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEeCChHHHHHHHHHHh
Confidence 4677877766542 1 11 12223445667777765422 122 37999999999999988754
No 174
>KOG0259|consensus
Probab=92.94 E-value=0.46 Score=33.50 Aligned_cols=65 Identities=22% Similarity=0.189 Sum_probs=43.3
Q ss_pred cCCCCCC----------HHHHHHHHHHHHhhcc----CCCCcchHHHHHHHHHHhhCCCC--CCeEEeeCChHHHHHHHH
Q psy6206 3 LPVGHCH----------PAVVKAACTQLALLNT----NNRFLHDNLVLCARKLASLLPDP--LSVCFFVNSGSEANDLAL 66 (83)
Q Consensus 3 ~~lGh~~----------p~i~~a~~~~~~~~~~----~~~~~~~~~~~la~~l~~~~p~~--~~~v~f~~sGseA~e~Al 66 (83)
+++||++ ++..+|+.+.+..... ++...-......|+.+.+.+|.. .+.|+.++.=+.|+|.++
T Consensus 64 ipl~~GDPsv~~~~~ts~~a~~Av~~al~Sgk~N~Yaps~G~~~AR~AVAeYl~~~l~~kl~a~DV~ltsGC~qAIe~~i 143 (447)
T KOG0259|consen 64 LPLGHGDPSVYPCFRTSQEAEQAVVDALRSGKGNGYAPSVGILPARRAVAEYLNRDLPNKLTADDVVLTSGCSQAIELAI 143 (447)
T ss_pred ccCCCCCCCccccccCCHHHHHHHHHHHhcCCCCCcCCccccHHHHHHHHHHhhcCCCCccCcCceEEeccchHHHHHHH
Confidence 5678865 4567888888876421 11111233355677766666644 468999999999999999
Q ss_pred H
Q psy6206 67 R 67 (83)
Q Consensus 67 k 67 (83)
.
T Consensus 144 ~ 144 (447)
T KOG0259|consen 144 S 144 (447)
T ss_pred H
Confidence 8
No 175
>COG0156 BioF 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]
Probab=92.89 E-value=0.68 Score=32.45 Aligned_cols=58 Identities=26% Similarity=0.241 Sum_probs=45.5
Q ss_pred CCHHHHHHHHHHHHhh--c-cCCC---CcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHH
Q psy6206 8 CHPAVVKAACTQLALL--N-TNNR---FLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALR 67 (83)
Q Consensus 8 ~~p~i~~a~~~~~~~~--~-~~~~---~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk 67 (83)
+||++++++.+.+++. . ..+. ..++.-.+|-++|.+.. +.+.....+||-.||...+-
T Consensus 54 ~~~~~~~a~~~~~~~~g~g~~gsR~i~G~~~~h~~LE~~lA~f~--g~e~al~f~SGy~AN~~~i~ 117 (388)
T COG0156 54 SHPELIEAAKAAIRRYGVGAGGSRLISGTSDLHVELEEELADFL--GAEAALLFSSGFVANLGLLS 117 (388)
T ss_pred CCHHHHHHHHHHHHHhCCCCCCcCcccCCcHHHHHHHHHHHHHh--CCCcEEEEcccchhHHHHHH
Confidence 5899999999999984 1 1122 23567789999999998 45678888999999998886
No 176
>PRK07812 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=92.76 E-value=0.82 Score=32.34 Aligned_cols=39 Identities=18% Similarity=0.342 Sum_probs=30.8
Q ss_pred CCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHH
Q psy6206 27 NRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALR 67 (83)
Q Consensus 27 ~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk 67 (83)
+.+.++....|.+.|.++.+. +...+++||+.|+..++.
T Consensus 64 sr~~~p~~~~Le~~lA~l~g~--~~av~~sSG~aAi~~al~ 102 (436)
T PRK07812 64 TRIMNPTQDVVEQRIAALEGG--VAALLLASGQAAETFAIL 102 (436)
T ss_pred cCCCCchHHHHHHHHHHHhCC--CeEEEEccHHHHHHHHHH
Confidence 334467778899999988743 467888999999999985
No 177
>TIGR00474 selA seryl-tRNA(sec) selenium transferase. In bacteria, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes SelA. This model excludes homologs that appear to differ in function from Frankia alni, Helicobacter pylori, Methanococcus jannaschii and other archaea, and so on.
Probab=92.66 E-value=1.6 Score=31.09 Aligned_cols=62 Identities=16% Similarity=0.083 Sum_probs=41.5
Q ss_pred CCCCC--CHHHHHHHHHHHHhhcc----C-CCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHH
Q psy6206 4 PVGHC--HPAVVKAACTQLALLNT----N-NRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALR 67 (83)
Q Consensus 4 ~lGh~--~p~i~~a~~~~~~~~~~----~-~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk 67 (83)
|+|-+ ++++.+++.+.++.... . .+...+....+.+.|++++.. +...+.+||+.|+..++.
T Consensus 87 Nlg~s~l~~~vieAv~~~~~~y~~l~~~l~~g~~g~r~~~le~~lA~l~ga--e~alvv~sg~aAi~l~l~ 155 (454)
T TIGR00474 87 NLGRAPLAEEAIEAVTDAARGYSNLEYDLETGKRGSRYSHVEGLLCELTGA--EDALVVNNNAAAVLLALN 155 (454)
T ss_pred cCCCCCCCHHHHHHHHHHHhcccchhccccccccchHHHHHHHHHHHHhCC--CcEEEECCHHHHHHHHHH
Confidence 34444 58899999888875421 0 111234557788888888854 345667899999988884
No 178
>PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=92.62 E-value=0.9 Score=32.03 Aligned_cols=52 Identities=13% Similarity=0.206 Sum_probs=36.8
Q ss_pred CCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhhcCCCceEEe
Q psy6206 26 NNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVHTNNDDVITQ 81 (83)
Q Consensus 26 ~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~~~r~~ii~~ 81 (83)
+....++....|.+.|.++.+ .+...+++||+.|+..++... .-.|. +||+.
T Consensus 58 y~r~~~p~~~~Le~~lA~leg--~~~al~~~sG~~Ai~~al~~l-l~~GD-~Vlv~ 109 (431)
T PRK08248 58 YTRIMNPTTDVFEKRIAALEG--GIGALAVSSGQAAITYSILNI-ASAGD-EIVSS 109 (431)
T ss_pred eECCCCchHHHHHHHHHHHhC--CCcEEEECCHHHHHHHHHHHH-hCCCC-EEEEc
Confidence 345566777889999998874 457889999999999998643 22333 45543
No 179
>PRK02610 histidinol-phosphate aminotransferase; Provisional
Probab=92.55 E-value=1.1 Score=30.49 Aligned_cols=59 Identities=12% Similarity=-0.028 Sum_probs=34.2
Q ss_pred CHHHHHHHHHHHHhhccCCCCcchHHHHHHHHHHhhCC--------CCCCeEEeeCChHHHHHHHHH
Q psy6206 9 HPAVVKAACTQLALLNTNNRFLHDNLVLCARKLASLLP--------DPLSVCFFVNSGSEANDLALR 67 (83)
Q Consensus 9 ~p~i~~a~~~~~~~~~~~~~~~~~~~~~la~~l~~~~p--------~~~~~v~f~~sGseA~e~Alk 67 (83)
.|.+.+++.+.+........|+..-..+|.+.|++... -+.+.|+.+++++|++..++.
T Consensus 43 ~~~~~~~~~~~~~~~~~~~~Y~~~G~~~Lr~aia~~~~~~~~~~~~v~~~~I~it~Ga~~al~~~~~ 109 (374)
T PRK02610 43 PPDLKQKLAWLYQQGIESNRYPDGGHEALKQAIAEYVNESAAGSSQITPANISVGNGSDELIRSLLI 109 (374)
T ss_pred CHHHHHHHHHHHhhcccccCCCCCchHHHHHHHHHHhCccccccCCCCHHHEEEcCChHHHHHHHHH
Confidence 46788888876654211122332222344444444332 234689999999999987665
No 180
>PRK08861 cystathionine gamma-synthase; Provisional
Probab=92.49 E-value=0.72 Score=32.09 Aligned_cols=42 Identities=21% Similarity=0.105 Sum_probs=35.1
Q ss_pred CCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHH
Q psy6206 26 NNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLA 69 (83)
Q Consensus 26 ~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~a 69 (83)
++.+.++....|.++|.++.. .+.+.+++||++|+..++...
T Consensus 47 Y~R~~npt~~~Le~~lA~leg--~e~ivvt~gg~~Ai~~~l~al 88 (388)
T PRK08861 47 YTRSGNPNRGLLEQTLSELES--GKGAVVTNCGTSALNLWVSAL 88 (388)
T ss_pred ccCCCCchHHHHHHHHHHHhC--CCeEEEECCHHHHHHHHHHHH
Confidence 456677888899999999884 479999999999999998643
No 181
>PRK03967 histidinol-phosphate aminotransferase; Provisional
Probab=92.47 E-value=1.1 Score=30.05 Aligned_cols=58 Identities=14% Similarity=0.051 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHhhccCCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHH
Q psy6206 10 PAVVKAACTQLALLNTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRL 68 (83)
Q Consensus 10 p~i~~a~~~~~~~~~~~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ 68 (83)
|.+.+++.+.+.... ...++..-..+|.+.+.+...-+.+.+.++++++|++...++.
T Consensus 34 ~~~~~~~~~~~~~~~-~~~Y~~~g~~~lr~~ia~~~~~~~~~I~~t~G~~~~l~~~~~~ 91 (337)
T PRK03967 34 EELKEEIFEELKRVP-FNRYPHITSDPLREAIAEFYGLDAENIAVGNGSDELISYLVKL 91 (337)
T ss_pred HHHHHHHHHHhhcCc-cccCCCCCHHHHHHHHHHHhCcCcceEEEcCCHHHHHHHHHHH
Confidence 778888877765321 1233333344566666666544457899999999999876664
No 182
>PRK08133 O-succinylhomoserine sulfhydrylase; Validated
Probab=92.45 E-value=0.74 Score=31.85 Aligned_cols=41 Identities=22% Similarity=0.284 Sum_probs=32.6
Q ss_pred CCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHH
Q psy6206 27 NRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLA 69 (83)
Q Consensus 27 ~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~a 69 (83)
+.+.++...+|.++|.++.+. +.+++++||++|+..++...
T Consensus 56 ~r~~~p~~~~le~~la~l~g~--~~~v~~ssG~~Ai~~al~al 96 (390)
T PRK08133 56 SRFTNPTVTMFQERLAALEGA--EACVATASGMAAILAVVMAL 96 (390)
T ss_pred ECCCChHHHHHHHHHHHHhCC--CcEEEECCHHHHHHHHHHHH
Confidence 455667788899999998854 46888999999999988743
No 183
>PRK14808 histidinol-phosphate aminotransferase; Provisional
Probab=92.41 E-value=0.73 Score=31.06 Aligned_cols=60 Identities=12% Similarity=-0.032 Sum_probs=38.2
Q ss_pred CHHHHHHHHHHHHhhccCCCCcchHHHHHHHHHHhhCC---CCCCeEEeeCChHHHHHHHHHHH
Q psy6206 9 HPAVVKAACTQLALLNTNNRFLHDNLVLCARKLASLLP---DPLSVCFFVNSGSEANDLALRLA 69 (83)
Q Consensus 9 ~p~i~~a~~~~~~~~~~~~~~~~~~~~~la~~l~~~~p---~~~~~v~f~~sGseA~e~Alk~a 69 (83)
+|.+++++.+.+..-. .+.|+.+...+|.+.+.+... .+.++|..+++++|++..+++..
T Consensus 34 p~~~~~~~~~~~~~~~-~~~Y~~~~~~~Lr~aia~~~~~~~~~~~~i~it~Ga~~~i~~~~~~~ 96 (335)
T PRK14808 34 PEDLVDEVFRRLNSDT-LRIYYDSPDEELIEKILSYLDTDFLSKNNVSVGNGADEIIYVMMLMF 96 (335)
T ss_pred CHHHHHHHHHHhhhhh-hhcCCCCChHHHHHHHHHHhCCCCCCcceEEEcCCHHHHHHHHHHHh
Confidence 4678888887664311 112332234455566655543 34568999999999999988743
No 184
>PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional
Probab=92.37 E-value=1.5 Score=29.99 Aligned_cols=53 Identities=11% Similarity=-0.021 Sum_probs=35.3
Q ss_pred HHHHHHHHHHhhccCCCCc-chHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHH
Q psy6206 12 VVKAACTQLALLNTNNRFL-HDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLA 69 (83)
Q Consensus 12 i~~a~~~~~~~~~~~~~~~-~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~a 69 (83)
-.+++.+.++... .+. .+....+.+.+.+.. +.+++.+++||++|.+.++...
T Consensus 13 ~~~~~~~~l~~~~---~~g~~~~~~~~e~~la~~~--g~~~~v~~~sgt~al~~~l~~~ 66 (375)
T PRK11706 13 ELDYIQQAMSSGK---LCGDGGFTRRCQQWLEQRF--GSAKVLLTPSCTAALEMAALLL 66 (375)
T ss_pred HHHHHHHHHHcCC---ccCCCHHHHHHHHHHHHHh--CCCeEEEECCHHHHHHHHHHHh
Confidence 3455555554432 122 234567777788776 3468999999999999988754
No 185
>TIGR01265 tyr_nico_aTase tyrosine/nicotianamine aminotransferases. This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley.
Probab=92.33 E-value=0.58 Score=32.20 Aligned_cols=60 Identities=13% Similarity=0.094 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHhhccCCCC-cchHHHHHHHHHHhhCC------CCCCeEEeeCChHHHHHHHHHHHH
Q psy6206 10 PAVVKAACTQLALLNTNNRF-LHDNLVLCARKLASLLP------DPLSVCFFVNSGSEANDLALRLAR 70 (83)
Q Consensus 10 p~i~~a~~~~~~~~~~~~~~-~~~~~~~la~~l~~~~p------~~~~~v~f~~sGseA~e~Alk~ar 70 (83)
+.+.+++.+.+..... ..+ +..-..++.+.+.+.+. ...+.++++++|++|+..+++...
T Consensus 51 ~~~~~~~~~~l~~~~~-~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~ii~t~G~t~al~~~~~~l~ 117 (403)
T TIGR01265 51 PEAEEAVKDALRSGKF-NGYAPSVGALAAREAVAEYLSSDLPGKLTADDVVLTSGCSQAIEICIEALA 117 (403)
T ss_pred HHHHHHHHHHHhcCCC-CCCCCCCCCHHHHHHHHHHHHhhcCCCCCHHHEEEecChHHHHHHHHHHhC
Confidence 5677777766643211 122 11112233333433332 134589999999999999998653
No 186
>PRK05387 histidinol-phosphate aminotransferase; Provisional
Probab=92.22 E-value=0.58 Score=31.35 Aligned_cols=59 Identities=17% Similarity=0.044 Sum_probs=39.6
Q ss_pred CHHHHHHHHHHHHhhccCCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHH
Q psy6206 9 HPAVVKAACTQLALLNTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLA 69 (83)
Q Consensus 9 ~p~i~~a~~~~~~~~~~~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~a 69 (83)
+|.+.+++.+.+... ...++.+...+|.+.+++...-+.+.|++++++++++..+++..
T Consensus 39 ~~~~~~a~~~~~~~~--~~~y~~~~~~~lr~aia~~~~~~~~~I~it~G~~~al~~~~~~l 97 (353)
T PRK05387 39 SPKVLEAIRAALGDD--LRLYPDPNADALRQAIAAYYGLDPEQVFVGNGSDEVLAHAFLAF 97 (353)
T ss_pred CHHHHHHHHHHhhhh--hhcCCCCcHHHHHHHHHHHhCCCHHHEEEcCCHHHHHHHHHHHh
Confidence 567888888766542 11233222346667776666444568999999999999988854
No 187
>TIGR01364 serC_1 phosphoserine aminotransferase. This model represents the common form of the phosphoserine aminotransferase SerC. The phosphoserine aminotransferase of the archaeon Methanosarcina barkeri and putative phosphoserine aminotransferase of Mycobacterium tuberculosis are represented by separate models. All are members of the class V aminotransferases (pfam00266).
Probab=92.18 E-value=1.3 Score=30.23 Aligned_cols=58 Identities=12% Similarity=0.013 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHhh---ccC----CCCcc---hHHHHHHHHHHhhCCC-CCCeEEee-CChHHHHHHHHH
Q psy6206 10 PAVVKAACTQLALL---NTN----NRFLH---DNLVLCARKLASLLPD-PLSVCFFV-NSGSEANDLALR 67 (83)
Q Consensus 10 p~i~~a~~~~~~~~---~~~----~~~~~---~~~~~la~~l~~~~p~-~~~~v~f~-~sGseA~e~Alk 67 (83)
..+++++.+.+... +.. +.... +...++.++|.+++.. ....|+|+ .|||+|+|+++.
T Consensus 5 ~~v~~~~~~~~~~~~~~~~~~~~~~hr~~~f~~~~~~~~~~l~~l~~~~~~~~v~~~~gsgT~a~ea~~~ 74 (349)
T TIGR01364 5 EEVLEQAQKELLNFNGTGMSVMEISHRSKEFEAVANEAESDLRELLNIPDNYEVLFLQGGATGQFAAVPL 74 (349)
T ss_pred HHHHHHHHHHHhCccCCCccccccCCCchHHHHHHHHHHHHHHHHhCCCCCceEEEEcCCchHHHHHHHH
Confidence 46888888888743 111 11111 3446667777777752 23456555 669999999987
No 188
>PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=92.16 E-value=1.2 Score=31.50 Aligned_cols=38 Identities=26% Similarity=0.116 Sum_probs=30.8
Q ss_pred CcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHH
Q psy6206 29 FLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRL 68 (83)
Q Consensus 29 ~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ 68 (83)
..++....|.+.|.++.+. ..+..++||+.|+..++..
T Consensus 58 ~~nPtv~~lE~~la~leg~--~~av~~~SG~aAi~~al~a 95 (432)
T PRK06702 58 IGNPTLAAFEQKLAELEGG--VGAVATASGQAAIMLAVLN 95 (432)
T ss_pred CCCcHHHHHHHHHHHHhCC--CcEEEECCHHHHHHHHHHH
Confidence 3467788899999998754 4678899999999999973
No 189
>TIGR01814 kynureninase kynureninase. This model describes kynureninase, a pyridoxal-phosphate enzyme. Kynurinine is a Trp breakdown product and a precursor for NAD. In Chlamydia psittaci, an obligate intracellular pathogen, kynureninase makes anthranilate, a Trp precursor, from kynurenine. This counters the tryptophan hydrolysis that occurs in the host cell in response to the pathogen.
Probab=92.13 E-value=0.9 Score=31.30 Aligned_cols=65 Identities=17% Similarity=-0.014 Sum_probs=39.4
Q ss_pred CCCCCCHHHHHHHHHHHHhhcc--C-CCCc--c--hHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHH
Q psy6206 4 PVGHCHPAVVKAACTQLALLNT--N-NRFL--H--DNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLA 69 (83)
Q Consensus 4 ~lGh~~p~i~~a~~~~~~~~~~--~-~~~~--~--~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~a 69 (83)
.+|-.++.+.+++.+.++.... . ..+. . ....+..+.+ +.+..+.+.|.|++++|+++..+++-.
T Consensus 35 a~g~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~g~~~~~v~~~~~~t~~l~~~~~~~ 106 (406)
T TIGR01814 35 SLGLMPKAARNALKEELDKWAKIAIRGHNTGKAPWFTLDESLLKL-RLVGAKEDEVVVMNTLTINLHLLLASF 106 (406)
T ss_pred CcCcCcHHHHHHHHHHHHHHHHhhhccCccCCCChhhhhhhhccc-cccCCCCCcEEEeCCchHHHHHHHHHh
Confidence 3555567788888877765411 1 1111 1 1122222334 566555678999999999999988743
No 190
>PRK08056 threonine-phosphate decarboxylase; Provisional
Probab=92.08 E-value=0.84 Score=30.86 Aligned_cols=58 Identities=16% Similarity=0.018 Sum_probs=40.2
Q ss_pred CHHHHHHHHHHHHhhccCCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHH
Q psy6206 9 HPAVVKAACTQLALLNTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLA 69 (83)
Q Consensus 9 ~p~i~~a~~~~~~~~~~~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~a 69 (83)
.|.+.+++.+.+.... .++.+...+|.+.+.+....+.+.|++++++++++..+++..
T Consensus 35 p~~~~~a~~~~~~~~~---~y~~~~~~~lr~~ia~~~~~~~~~i~it~Ga~~~l~~~~~~l 92 (356)
T PRK08056 35 PVSLKRAIIDNLDCAE---RYPDVEYRHLHQALARHHQVPASWILAGNGETESIFAVVSGL 92 (356)
T ss_pred CHHHHHHHHHHHHhcc---cCcCccHHHHHHHHHHHhCcChhhEEECCCHHHHHHHHHHHh
Confidence 4678888887765532 233333456767777766545568999999999999888753
No 191
>TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase. Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli.
Probab=91.89 E-value=0.54 Score=31.72 Aligned_cols=38 Identities=16% Similarity=0.119 Sum_probs=28.3
Q ss_pred hHHHHHHHHHHhhCCCC--CCeEEeeCChHHHHHHHHHHH
Q psy6206 32 DNLVLCARKLASLLPDP--LSVCFFVNSGSEANDLALRLA 69 (83)
Q Consensus 32 ~~~~~la~~l~~~~p~~--~~~v~f~~sGseA~e~Alk~a 69 (83)
+...++.+.|.+++..+ .+.+.|++||+++++.++...
T Consensus 35 ~~~~~~r~~la~l~~~~~~~~~i~~t~~~t~al~~~~~~l 74 (363)
T TIGR02326 35 IVVEQIRQQLLALATAEEGYTSVLLQGSGTFAVEAVIGSA 74 (363)
T ss_pred HHHHHHHHHHHHHhCCCCCceEEEEcCCCHHHHHHHHHhc
Confidence 44566777777777543 347999999999999988643
No 192
>cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway.
Probab=91.71 E-value=1 Score=30.12 Aligned_cols=47 Identities=15% Similarity=0.118 Sum_probs=32.3
Q ss_pred hHHHHHHHHHHhhCCCC-CCeEEeeCChHHHHHHHHHHHHhhcCCCceEE
Q psy6206 32 DNLVLCARKLASLLPDP-LSVCFFVNSGSEANDLALRLARVHTNNDDVIT 80 (83)
Q Consensus 32 ~~~~~la~~l~~~~p~~-~~~v~f~~sGseA~e~Alk~ar~~~~r~~ii~ 80 (83)
+...++.+.+.+..+.+ ...+++++||++|+..++... ...|+ .||+
T Consensus 32 ~~~~~~~~~la~~~g~~~~~~~~~~~~~t~al~~~~~~~-~~~g~-~vl~ 79 (356)
T cd06451 32 ALMDEILEGLRYVFQTENGLTFLLSGSGTGAMEAALSNL-LEPGD-KVLV 79 (356)
T ss_pred HHHHHHHHHHHHHhcCCCCCEEEEecCcHHHHHHHHHHh-CCCCC-EEEE
Confidence 33567778888887642 345889999999999988743 23444 4554
No 193
>COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=91.71 E-value=0.78 Score=32.03 Aligned_cols=35 Identities=26% Similarity=0.207 Sum_probs=30.1
Q ss_pred hHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHH
Q psy6206 32 DNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRL 68 (83)
Q Consensus 32 ~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ 68 (83)
+...++-+.+++.+ +...+..++|||.|.+.|++.
T Consensus 34 ~~v~~FE~~~ae~~--G~k~ava~~sgT~AL~laL~a 68 (374)
T COG0399 34 PFVRRFEQAFAEYL--GVKYAVAVSSGTAALHLALLA 68 (374)
T ss_pred hHHHHHHHHHHHHh--CCCeEEEecChHHHHHHHHHh
Confidence 55678888899998 567899999999999999983
No 194
>PRK07908 hypothetical protein; Provisional
Probab=91.62 E-value=0.86 Score=30.65 Aligned_cols=56 Identities=11% Similarity=0.061 Sum_probs=38.1
Q ss_pred CHHHHHHHHHHHHhhccCCCCcc-hHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHH
Q psy6206 9 HPAVVKAACTQLALLNTNNRFLH-DNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALR 67 (83)
Q Consensus 9 ~p~i~~a~~~~~~~~~~~~~~~~-~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk 67 (83)
.+.+.+++.+.+.... .|+. .-..++.+.+.+..+.+.+.+.++++++|++..+++
T Consensus 37 ~~~~~~~~~~~~~~~~---~Y~~~~g~~~lr~aia~~~~~~~~~I~it~Ga~~al~~~~~ 93 (349)
T PRK07908 37 PEWLRERLAARLGDLA---AYPSTEDERRARAAVAARHGRTPDEVLLLAGAAEGFALLAR 93 (349)
T ss_pred CHHHHHHHHHHhhHhh---cCCCccchHHHHHHHHHHhCcChhhEEECCCHHHHHHHHHh
Confidence 4668888888775541 2221 123456666666665456799999999999998876
No 195
>TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase. This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine.
Probab=91.44 E-value=1.1 Score=31.03 Aligned_cols=42 Identities=21% Similarity=0.097 Sum_probs=34.1
Q ss_pred CCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHH
Q psy6206 26 NNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLA 69 (83)
Q Consensus 26 ~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~a 69 (83)
++.++++....|.+.|.++.+. +.+.+++||++|+..++...
T Consensus 45 Y~R~~~p~~~~le~~lA~l~g~--~~v~~~~gg~~Ai~~~l~al 86 (382)
T TIGR02080 45 YSRSGNPTRDLLQQALAELEGG--AGAVVTNTGMSAIHLVTTAL 86 (382)
T ss_pred ccCCCCchHHHHHHHHHHHhCC--CcEEEEcCHHHHHHHHHHHH
Confidence 4566777888999999998753 57999999999999988743
No 196
>PRK04311 selenocysteine synthase; Provisional
Probab=91.39 E-value=2.6 Score=30.15 Aligned_cols=58 Identities=19% Similarity=0.059 Sum_probs=39.7
Q ss_pred CHHHHHHHHHHHHhhcc-C----CCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHH
Q psy6206 9 HPAVVKAACTQLALLNT-N----NRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRL 68 (83)
Q Consensus 9 ~p~i~~a~~~~~~~~~~-~----~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ 68 (83)
.+++.+++.+.+..... . .+...+....+.+.|+++++. +.+++++||+.|+..++..
T Consensus 99 ~~~v~eav~~~~~~~~~le~~l~~g~~g~r~~~~e~~lA~l~Ga--e~a~vv~sgtaAl~l~l~~ 161 (464)
T PRK04311 99 SEAAIEAVTEAARGYSNLEYDLATGKRGSRDRALAALLCALTGA--EDALVVNNNAAAVLLALNA 161 (464)
T ss_pred CHHHHHHHHHHHhcccccccchhhcccchHHHHHHHHHHHHhCC--CeEEEECCHHHHHHHHHHH
Confidence 57888888887765321 0 011234456788888888854 4678889999999988853
No 197
>PRK08153 histidinol-phosphate aminotransferase; Provisional
Probab=91.38 E-value=0.77 Score=31.26 Aligned_cols=58 Identities=16% Similarity=0.008 Sum_probs=39.0
Q ss_pred CHHHHHHHHHHHHhhccCCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHH
Q psy6206 9 HPAVVKAACTQLALLNTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLA 69 (83)
Q Consensus 9 ~p~i~~a~~~~~~~~~~~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~a 69 (83)
+|++.+++.+.+.... .|+.+...+|.+.|.+...-+.+.|.++++.++++..++...
T Consensus 47 ~~~~~~a~~~~~~~~~---~Y~~~~~~~Lr~~ia~~~~~~~~~I~it~G~~~~l~~~~~~~ 104 (369)
T PRK08153 47 SPSVIAAMREAAAEIW---KYGDPENHDLRHALAAHHGVAPENIMVGEGIDGLLGLIVRLY 104 (369)
T ss_pred CHHHHHHHHHHHHHhh---cCCCCccHHHHHHHHHHhCCCHHHEEEcCCHHHHHHHHHHHh
Confidence 5788999888765431 122222346666676666444568999999999999887743
No 198
>PLN02409 serine--glyoxylate aminotransaminase
Probab=91.14 E-value=0.7 Score=31.92 Aligned_cols=48 Identities=15% Similarity=0.107 Sum_probs=31.8
Q ss_pred hHHHHHHHHHHhhCCCC-CCeEEeeCChHHHHHHHHHHHHhhcCCCceEEe
Q psy6206 32 DNLVLCARKLASLLPDP-LSVCFFVNSGSEANDLALRLARVHTNNDDVITQ 81 (83)
Q Consensus 32 ~~~~~la~~l~~~~p~~-~~~v~f~~sGseA~e~Alk~ar~~~~r~~ii~~ 81 (83)
+...++.+.+.+++..+ .+.++|+++|+++++.++... +....+||..
T Consensus 42 ~~~~~~~~~l~~~~g~~~~~~vi~~~~gt~a~~~a~~~~--~~~Gd~Vlv~ 90 (401)
T PLN02409 42 ALTKELLEDVKYIFKTKSGTPFIFPTTGTGAWESALTNT--LSPGDKVVSF 90 (401)
T ss_pred HHHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHhc--CCCCCEEEEe
Confidence 44566777777776543 347899999999999988642 2223356554
No 199
>PLN03026 histidinol-phosphate aminotransferase; Provisional
Probab=91.05 E-value=0.55 Score=32.17 Aligned_cols=57 Identities=16% Similarity=0.016 Sum_probs=37.1
Q ss_pred CHHHHHHHHHHHHhhccCCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHH
Q psy6206 9 HPAVVKAACTQLALLNTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLA 69 (83)
Q Consensus 9 ~p~i~~a~~~~~~~~~~~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~a 69 (83)
.|.+.+++.+. ... ..++.+...+|.+.+.+....+.+.|++++++++++..+++..
T Consensus 67 ~~~v~~a~~~~-~~~---~~Yp~~~~~~lr~~ia~~~~~~~~~I~~t~Ga~~~i~~~~~~~ 123 (380)
T PLN03026 67 PPEVLEALGNM-KFP---YVYPDPESRRLRAALAEDSGLESENILVGCGADELIDLLMRCV 123 (380)
T ss_pred CHHHHHHHHhh-Hhh---ccCCCCCHHHHHHHHHHHhCcChhhEEEcCCHHHHHHHHHHHh
Confidence 46677776542 111 2233333456777777776545568999999999999888743
No 200
>PRK07392 threonine-phosphate decarboxylase; Validated
Probab=90.92 E-value=1.3 Score=30.01 Aligned_cols=57 Identities=19% Similarity=0.060 Sum_probs=37.7
Q ss_pred CHHHHHHHHHHHHhhccCCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHH
Q psy6206 9 HPAVVKAACTQLALLNTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRL 68 (83)
Q Consensus 9 ~p~i~~a~~~~~~~~~~~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ 68 (83)
.|.+.+++.+.+..+. .|+.+...+|.+.|.+...-+.+.|..+++++|++..+++.
T Consensus 37 ~~~~~~a~~~~~~~~~---~Y~~~~~~~Lr~aia~~~~v~~~~I~it~G~~~~i~~~~~~ 93 (360)
T PRK07392 37 PESVIAAIQSALSALR---HYPDPDYRELRLALAQHHQLPPEWILPGNGAAELLTWAGRE 93 (360)
T ss_pred CHHHHHHHHHHHHHhh---cCCCcCHHHHHHHHHHHhCcChhhEEECCCHHHHHHHHHHH
Confidence 4778888887665532 22222223555666665544556899999999999988775
No 201
>PRK06767 methionine gamma-lyase; Provisional
Probab=90.76 E-value=1.6 Score=30.11 Aligned_cols=40 Identities=20% Similarity=0.174 Sum_probs=31.0
Q ss_pred CCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHH
Q psy6206 26 NNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALR 67 (83)
Q Consensus 26 ~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk 67 (83)
++.++++...+|.+.|.++.+. +...+.+||+.|+..++.
T Consensus 55 y~r~~~pt~~~Le~~lA~l~G~--~~al~~~sG~~Ai~~~l~ 94 (386)
T PRK06767 55 YSRLGNPTVKLFEERMAVLEGG--EEALAFGSGMAAISATLI 94 (386)
T ss_pred ccCCCCcchHHHHHHHHHHhCC--CcEEEECCHHHHHHHHHH
Confidence 4456677778899999998854 457778999999888775
No 202
>PRK07269 cystathionine gamma-synthase; Reviewed
Probab=90.53 E-value=1.1 Score=30.82 Aligned_cols=41 Identities=20% Similarity=0.139 Sum_probs=33.9
Q ss_pred CCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHH
Q psy6206 26 NNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRL 68 (83)
Q Consensus 26 ~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ 68 (83)
++.+.++...+|.++|++... .+.+..++||.+|+..++.+
T Consensus 48 Y~R~~~p~~~~le~~lA~leg--~~~~v~~~sG~aAi~~~l~~ 88 (364)
T PRK07269 48 YTRTKNPTRAKLEETLAAIES--ADYALATSSGMSAIVLAFSV 88 (364)
T ss_pred eeCCCCccHHHHHHHHHHHhC--CCeEEEeCCHHHHHHHHHHH
Confidence 455677788899999999883 56899999999999999853
No 203
>PLN02242 methionine gamma-lyase
Probab=90.53 E-value=1.7 Score=30.50 Aligned_cols=42 Identities=19% Similarity=0.216 Sum_probs=33.8
Q ss_pred CCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHH
Q psy6206 26 NNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLA 69 (83)
Q Consensus 26 ~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~a 69 (83)
++.+.++...+|.++|.++.. .+.+.+++||++|+..++...
T Consensus 70 Y~r~~~Pt~~~LE~~lA~l~g--~~~~l~~~sG~~Ai~~al~al 111 (418)
T PLN02242 70 YSRHFNPTVLNLGRQMAALEG--TEAAYCTASGMSAISSVLLQL 111 (418)
T ss_pred ccCCCChhHHHHHHHHHHHhC--CCeEEEEccHHHHHHHHHHHH
Confidence 345567788899999999884 457788999999999998744
No 204
>PRK06084 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=90.51 E-value=2 Score=30.22 Aligned_cols=43 Identities=19% Similarity=0.139 Sum_probs=33.9
Q ss_pred CCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHH
Q psy6206 26 NNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLAR 70 (83)
Q Consensus 26 ~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar 70 (83)
++.+.++....|.++|.++.+ .....+++||++|+..+++...
T Consensus 52 y~r~~~pt~~~Le~~lA~l~g--~~~~l~~ssG~~Ai~~al~al~ 94 (425)
T PRK06084 52 YTRIMNPTNDVLEQRVAALEG--GVGALAVASGMAAITYAIQTIA 94 (425)
T ss_pred ccCCCCchHHHHHHHHHHHhC--CCceeEehhHHHHHHHHHHHHh
Confidence 455667778899999999875 3467788999999999998543
No 205
>PRK05994 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=90.46 E-value=1.3 Score=31.16 Aligned_cols=50 Identities=18% Similarity=0.247 Sum_probs=36.2
Q ss_pred CCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhhcCCCceEE
Q psy6206 27 NRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVHTNNDDVIT 80 (83)
Q Consensus 27 ~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~~~r~~ii~ 80 (83)
+...++....|.++|.++.+. +..++.+||+.|++.+++... -.|. +||+
T Consensus 58 ~r~~~p~~~~le~~lA~l~g~--~~al~~~SG~~Ai~~al~all-~pGd-~VIv 107 (427)
T PRK05994 58 TRITNPTNAVLEERVAALEGG--TAALAVASGHAAQFLVFHTLL-QPGD-EFIA 107 (427)
T ss_pred ECCCCccHHHHHHHHHHHhCC--CcEEEEcCHHHHHHHHHHHHh-CCCC-EEEE
Confidence 445566678899999998854 458889999999999998542 2343 4554
No 206
>COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones]
Probab=90.37 E-value=2.7 Score=29.54 Aligned_cols=75 Identities=20% Similarity=0.209 Sum_probs=48.6
Q ss_pred CCCCHHHHHHHHHHHHhhcc--C-CC-----CcchHHHHHHHHHHhhCCCC-CCeEEeeCChHHHHHHHHH-HHHhhcCC
Q psy6206 6 GHCHPAVVKAACTQLALLNT--N-NR-----FLHDNLVLCARKLASLLPDP-LSVCFFVNSGSEANDLALR-LARVHTNN 75 (83)
Q Consensus 6 Gh~~p~i~~a~~~~~~~~~~--~-~~-----~~~~~~~~la~~l~~~~p~~-~~~v~f~~sGseA~e~Alk-~ar~~~~r 75 (83)
+..+..+.+++.+....... . +. ..+....+..+.+.+.+..+ .+.|.|+.+-||++..... +.+.+...
T Consensus 32 ~~~p~~V~~a~~~~~~~~~an~~r~~~~~~~~~t~~~e~aRe~va~~~~a~~~~eIvft~~tT~aln~va~~l~~~~~~g 111 (405)
T COG0520 32 SQKPQAVLDAVAEYYRRYNANVHRGAHTLAEEATDLYEAAREAVARFLNADSSDEIVFTRGTTEALNLVARGLGRSLKPG 111 (405)
T ss_pred ccCCHHHHHHHHHHHHhhcCCcCcccchHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEeCChhHHHHHHHHHhhhhhcCC
Confidence 34567889999988765421 1 11 11334566777777777755 4789999999999998777 44433322
Q ss_pred CceEE
Q psy6206 76 DDVIT 80 (83)
Q Consensus 76 ~~ii~ 80 (83)
.+||.
T Consensus 112 deIv~ 116 (405)
T COG0520 112 DEIVV 116 (405)
T ss_pred CEEEE
Confidence 55654
No 207
>PLN02452 phosphoserine transaminase
Probab=90.29 E-value=1.4 Score=30.47 Aligned_cols=59 Identities=19% Similarity=0.153 Sum_probs=35.0
Q ss_pred CHHHHHHHHHHHHhhc--------c--CCCCcchHHHHHHHHHHhhC--CCCCCeEEeeCChHHHHHHHHH
Q psy6206 9 HPAVVKAACTQLALLN--------T--NNRFLHDNLVLCARKLASLL--PDPLSVCFFVNSGSEANDLALR 67 (83)
Q Consensus 9 ~p~i~~a~~~~~~~~~--------~--~~~~~~~~~~~la~~l~~~~--p~~~~~v~f~~sGseA~e~Alk 67 (83)
+|+|.+++.+.+.... . -+..+.+...+..+.|.+++ |.+++-+++..|||.+.|+++.
T Consensus 19 p~~Vl~~~~~~~~~~~~~g~s~~~~sHRs~~f~~i~~~~~~~L~~l~~~p~~y~v~~l~Gsgt~~~ea~~~ 89 (365)
T PLN02452 19 PANVLAKAQAELYNWEGSGMSVMEMSHRGKEFLSIIQKAEADLRELLDIPDNYEVLFLQGGASTQFAAIPL 89 (365)
T ss_pred CHHHHHHHHHHHhcccccCccccccCCCchHHHHHHHHHHHHHHHHhCCCCCceEEEEeCccHHHHHHHHH
Confidence 5788888877653310 0 01111233455566666665 4444455666899999999876
No 208
>PLN02880 tyrosine decarboxylase
Probab=90.20 E-value=1.5 Score=31.43 Aligned_cols=42 Identities=26% Similarity=0.135 Sum_probs=30.2
Q ss_pred chHHHHHHHHHHhhCCCCC-------CeEEeeCChHHHHHHHHHHHHhh
Q psy6206 31 HDNLVLCARKLASLLPDPL-------SVCFFVNSGSEANDLALRLARVH 72 (83)
Q Consensus 31 ~~~~~~la~~l~~~~p~~~-------~~v~f~~sGseA~e~Alk~ar~~ 72 (83)
++...++.+.|.+++.-+. .--+|+++|||||-.||..||.+
T Consensus 121 ~~lE~~vi~wl~~l~g~p~~~~~~~~~gG~~tsggs~anl~al~~AR~~ 169 (490)
T PLN02880 121 TELEMIVLDWLAKLLNLPEQFLSTGNGGGVIQGTASEAVLVVLLAARDR 169 (490)
T ss_pred HHHHHHHHHHHHHHhCCCchhhcCCCCceEEcCccHHHHHHHHHHHHHH
Confidence 3445667777777763211 23678999999999999999975
No 209
>PRK00011 glyA serine hydroxymethyltransferase; Reviewed
Probab=90.13 E-value=1.7 Score=29.97 Aligned_cols=61 Identities=20% Similarity=0.174 Sum_probs=34.1
Q ss_pred CCHHHHHHHHHHHHhh-c--cC-CCCc--chH---HHH-HHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHH
Q psy6206 8 CHPAVVKAACTQLALL-N--TN-NRFL--HDN---LVL-CARKLASLLPDPLSVCFFVNSGSEANDLALRLA 69 (83)
Q Consensus 8 ~~p~i~~a~~~~~~~~-~--~~-~~~~--~~~---~~~-la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~a 69 (83)
-+|++.+++.+.+... . .. +.++ .+. ..+ +.+.+.+.++.+...+++ +||++|++.++...
T Consensus 37 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~la~~~g~~~~~i~~-~sgt~al~~~l~~l 107 (416)
T PRK00011 37 VSPAVMEAQGSVLTNKYAEGYPGKRYYGGCEYVDVVEQLAIDRAKELFGAEYANVQP-HSGSQANAAVYFAL 107 (416)
T ss_pred CCHHHHHHHhchhhcccccCCCCccccccchHHHHHHHHHHHHHHHHhCCCceeeec-CCchHHHHHHHHHh
Confidence 4688888887765322 1 11 1111 111 222 233567777654444555 57999999888754
No 210
>PRK05166 histidinol-phosphate aminotransferase; Provisional
Probab=90.10 E-value=2.4 Score=28.80 Aligned_cols=58 Identities=17% Similarity=0.112 Sum_probs=36.2
Q ss_pred CHHHHHHHHHHHHhhccCCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHH
Q psy6206 9 HPAVVKAACTQLALLNTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLA 69 (83)
Q Consensus 9 ~p~i~~a~~~~~~~~~~~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~a 69 (83)
.|.+.+++.+....+ ..|+...-.+|.+.+.+..+.+.+.|.++++++|++...+...
T Consensus 51 ~~~~~~al~~~~~~~---~~Y~~~~g~~lr~~ia~~~~~~~~~i~~t~G~~~~l~~~~~~~ 108 (371)
T PRK05166 51 SPAVRRAFADIAELL---RLYPDPQGRALREAIAARTGVPADRIILGNGSEDLIAVICRAV 108 (371)
T ss_pred CHHHHHHHHHHHHHh---hcCCCCcHHHHHHHHHHHhCcCHHHEEEcCCHHHHHHHHHHHh
Confidence 356777776644332 1222211135667777666544568999999999998777643
No 211
>TIGR03588 PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase. This family of enzymes are aminotransferases of the pfam01041 family involved in the biosynthesis of pseudaminic acid. They convert UDP-4-keto-6-deoxy-N-acetylglucosamine into UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic acid has a role in surface polysaccharide in Pseudomonas as well as in the modification of flagellin in Campylobacter and Helicobacter species.
Probab=89.98 E-value=3 Score=28.46 Aligned_cols=55 Identities=15% Similarity=-0.011 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHhhccCCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHH
Q psy6206 10 PAVVKAACTQLALLNTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLA 69 (83)
Q Consensus 10 p~i~~a~~~~~~~~~~~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~a 69 (83)
++-.+++.+.+..... ...+...+|.+.+.+.+.. +..++++||++|+..+++..
T Consensus 10 ~~~~~~v~~~~~~~~~---~~g~~~~~le~~la~~~g~--~~~v~~~sgt~al~~~l~al 64 (380)
T TIGR03588 10 QDDIDAVVEVLKSDFL---TQGPTVPAFEEALAEYVGA--KYAVAFNSATSALHIACLAL 64 (380)
T ss_pred HHHHHHHHHHHhcCCc---cCChhHHHHHHHHHHHHCC--CeEEEEcCHHHHHHHHHHHc
Confidence 3445666666654311 1234456788888888753 45666779999999999754
No 212
>PTZ00094 serine hydroxymethyltransferase; Provisional
Probab=89.95 E-value=2.1 Score=30.13 Aligned_cols=33 Identities=18% Similarity=0.041 Sum_probs=23.5
Q ss_pred HHHHHHhhCCCCCCeEEee---CChHHHHHHHHHHH
Q psy6206 37 CARKLASLLPDPLSVCFFV---NSGSEANDLALRLA 69 (83)
Q Consensus 37 la~~l~~~~p~~~~~v~f~---~sGseA~e~Alk~a 69 (83)
..+++.+.+..+.+.+.|+ +||++|+..+++-.
T Consensus 85 ar~~~a~lf~a~~~~~~~~~~~~sgt~an~~v~~al 120 (452)
T PTZ00094 85 CQKRALEAFGLDPEEWGVNVQPYSGSPANFAVYTAL 120 (452)
T ss_pred HHHHHHHHhCCCcccceeecCCCchHHHHHHHHHHh
Confidence 3446667776555566677 79999999988744
No 213
>PRK07503 methionine gamma-lyase; Provisional
Probab=89.66 E-value=2.3 Score=29.59 Aligned_cols=41 Identities=24% Similarity=0.236 Sum_probs=31.8
Q ss_pred CCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHH
Q psy6206 26 NNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRL 68 (83)
Q Consensus 26 ~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ 68 (83)
++.+.++...+|.+.|.++.+. +....++||+.|+..+++.
T Consensus 59 y~r~~~p~~~~le~~lA~l~g~--~~~i~~~sG~~Al~~~l~~ 99 (403)
T PRK07503 59 YSRISNPTLALLEQRMASLEGG--EAAVALASGMGAITATLWT 99 (403)
T ss_pred eeCCCCchHHHHHHHHHHHhCC--CcEEEEcCHHHHHHHHHHH
Confidence 4556677788899999998754 3466778999999999874
No 214
>TIGR01328 met_gam_lyase methionine gamma-lyase. This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine.
Probab=89.50 E-value=2.3 Score=29.46 Aligned_cols=41 Identities=17% Similarity=0.068 Sum_probs=33.0
Q ss_pred CCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHH
Q psy6206 26 NNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRL 68 (83)
Q Consensus 26 ~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ 68 (83)
++.++++...+|.++|.+..+. +...+++||+.|+..++..
T Consensus 53 y~r~~~p~~~~le~~lA~l~g~--~~av~~~sG~~Ai~~~l~a 93 (391)
T TIGR01328 53 YSRLGNPTVSNLEGRIAFLEGT--EAAVATSSGMGAIAATLLT 93 (391)
T ss_pred eeCCCCchHHHHHHHHHHHhCC--CcEEEECCHHHHHHHHHHH
Confidence 4566777788999999999854 4578899999999988754
No 215
>PLN02656 tyrosine transaminase
Probab=89.30 E-value=1.8 Score=29.92 Aligned_cols=61 Identities=23% Similarity=0.146 Sum_probs=36.5
Q ss_pred CHHHHHHHHHHHHhh--c-c-CCCCcchHHHHHHHHHHhhCC--CCCCeEEeeCChHHHHHHHHHHH
Q psy6206 9 HPAVVKAACTQLALL--N-T-NNRFLHDNLVLCARKLASLLP--DPLSVCFFVNSGSEANDLALRLA 69 (83)
Q Consensus 9 ~p~i~~a~~~~~~~~--~-~-~~~~~~~~~~~la~~l~~~~p--~~~~~v~f~~sGseA~e~Alk~a 69 (83)
.|.+.+++.+.+..- . + ......+....+++.+....+ -+.+.|++++++++++..++...
T Consensus 50 ~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l 116 (409)
T PLN02656 50 THVAQEAVVDALQSNKFNGYAPTVGLPQARRAIAEYLSRDLPYKLSLDDVFITSGCTQAIDVALSML 116 (409)
T ss_pred CHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCcccEEEeCChHHHHHHHHHHH
Confidence 466788887766542 1 1 111112333455555544322 23468999999999999988754
No 216
>TIGR01264 tyr_amTase_E tyrosine aminotransferase, eukaryotic. This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs.
Probab=89.27 E-value=1.5 Score=30.05 Aligned_cols=60 Identities=15% Similarity=0.057 Sum_probs=34.3
Q ss_pred CHHHHHHHHHHHHhhccCCCC-c----chHHHHHHHHHHhh-CCCCCCeEEeeCChHHHHHHHHHHH
Q psy6206 9 HPAVVKAACTQLALLNTNNRF-L----HDNLVLCARKLASL-LPDPLSVCFFVNSGSEANDLALRLA 69 (83)
Q Consensus 9 ~p~i~~a~~~~~~~~~~~~~~-~----~~~~~~la~~l~~~-~p~~~~~v~f~~sGseA~e~Alk~a 69 (83)
.|.+.+++.+.+..... ..| + .+....+++.+... .+-..+.|.+++++++++..++...
T Consensus 50 ~~~~~~~~~~~~~~~~~-~~Y~~~~g~~~lr~aia~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l 115 (401)
T TIGR01264 50 DPEVMQAMKDSLDSGKY-NGYAPTVGALSAREAIASYYHNPDGPIEADDVVLCSGCSHAIEMCIAAL 115 (401)
T ss_pred CHHHHHHHHHHHhccCC-CCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHEEECcChHHHHHHHHHHh
Confidence 45677777776654211 112 1 12234455544431 0123458999999999999988754
No 217
>PRK05764 aspartate aminotransferase; Provisional
Probab=89.19 E-value=4.6 Score=27.50 Aligned_cols=61 Identities=15% Similarity=-0.109 Sum_probs=36.3
Q ss_pred CHHHHHHHHHHHHhhc--cCC-CCcchHHHHHHHHHHhhCC--CCCCeEEeeCChHHHHHHHHHHH
Q psy6206 9 HPAVVKAACTQLALLN--TNN-RFLHDNLVLCARKLASLLP--DPLSVCFFVNSGSEANDLALRLA 69 (83)
Q Consensus 9 ~p~i~~a~~~~~~~~~--~~~-~~~~~~~~~la~~l~~~~p--~~~~~v~f~~sGseA~e~Alk~a 69 (83)
.|.+.+++.+.++... +.. ....+....+++.+.+..+ -..+.+++++++++|+..++...
T Consensus 46 ~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~~ 111 (393)
T PRK05764 46 PEHIKEAAIEALDDGKTKYTPAAGIPELREAIAAKLKRDNGLDYDPSQVIVTTGAKQALYNAFMAL 111 (393)
T ss_pred CHHHHHHHHHHHhcCCCCcCCCCChHHHHHHHHHHHHHHhCCCCCHHHEEEeCCcHHHHHHHHHHh
Confidence 5778888877765421 111 1112333455555543322 23357999999999999988754
No 218
>PRK04870 histidinol-phosphate aminotransferase; Provisional
Probab=89.19 E-value=2.7 Score=28.27 Aligned_cols=60 Identities=15% Similarity=0.102 Sum_probs=37.1
Q ss_pred CHHHHHHHHHHHHhhccCCCCcchHHHHHHHHHHhhCCCCC-CeEEeeCChHHHHHHHHHHH
Q psy6206 9 HPAVVKAACTQLALLNTNNRFLHDNLVLCARKLASLLPDPL-SVCFFVNSGSEANDLALRLA 69 (83)
Q Consensus 9 ~p~i~~a~~~~~~~~~~~~~~~~~~~~~la~~l~~~~p~~~-~~v~f~~sGseA~e~Alk~a 69 (83)
.|.+.+++.+.+..... ..|+.+...+|.+.|.+...-.. +.+.+++++++++..++.+.
T Consensus 41 ~~~~~~~~~~~~~~~~~-~~Y~~~~~~~lr~~ia~~~~~~~~~~I~~t~G~~~~i~~~~~~~ 101 (356)
T PRK04870 41 PAELRAELGERLAEVAL-NRYPDPRAAALKAALRAAMGVPAGADVLLGNGSDELIQLLALAC 101 (356)
T ss_pred CHHHHHHHHHHhhcccc-ccCCCCCHHHHHHHHHHHhCcCCCCcEEEcCCHHHHHHHHHHHh
Confidence 46789998887754211 12222223456666666654222 47888888889988877643
No 219
>PRK12462 phosphoserine aminotransferase; Provisional
Probab=89.14 E-value=2 Score=29.83 Aligned_cols=59 Identities=19% Similarity=0.241 Sum_probs=33.4
Q ss_pred CHHHHHHHHHHHHhhcc----------CCCCcchHHHHHHHHHHhhC--CCCCCeEEeeCChHHHHHHHHH
Q psy6206 9 HPAVVKAACTQLALLNT----------NNRFLHDNLVLCARKLASLL--PDPLSVCFFVNSGSEANDLALR 67 (83)
Q Consensus 9 ~p~i~~a~~~~~~~~~~----------~~~~~~~~~~~la~~l~~~~--p~~~~~v~f~~sGseA~e~Alk 67 (83)
+++|.+++.+.+..... -+..+.+...+..+.|.+++ |.+.+-+++..|||.+.|+++.
T Consensus 16 p~~Vl~~~~~~~~~~~~~g~si~eisHRs~~F~~i~~~~~~~Lr~Ll~~P~~y~Vlfl~GggT~~~ea~~~ 86 (364)
T PRK12462 16 PDTVLEQVRQAVVELPETGLSVLGMSHRSSWFSSLLAQAEADLRDLLGIPDEYGVVFLQGGSSLQFSMIPM 86 (364)
T ss_pred CHHHHHHHHHHHhcccccCccccccccccHHHHHHHHHHHHHHHHHhCCCCCCeEEEEeccHHHHHHHHHH
Confidence 57888888776655311 01111233445555566665 4434334555669999998876
No 220
>PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A ....
Probab=89.13 E-value=1.9 Score=29.83 Aligned_cols=41 Identities=34% Similarity=0.250 Sum_probs=29.9
Q ss_pred hHHHHHHHHHHhhCCCC-------CCeEEeeCChHHHHHHHHHHHHhh
Q psy6206 32 DNLVLCARKLASLLPDP-------LSVCFFVNSGSEANDLALRLARVH 72 (83)
Q Consensus 32 ~~~~~la~~l~~~~p~~-------~~~v~f~~sGseA~e~Alk~ar~~ 72 (83)
+...++.+.|.+++.-+ ..--.|+++|||||-.|+..||..
T Consensus 79 ~~E~~vi~~l~~l~g~~~~~~~~~~~~G~~t~Ggt~anl~al~aAR~~ 126 (373)
T PF00282_consen 79 EIEREVIRWLADLFGLPESFTFSKDAGGVFTSGGTEANLYALLAARER 126 (373)
T ss_dssp HHHHHHHHHHHHHTTGSGGTTSTTTSEEEEESSHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHhCCcccccccCCCceeEeccchHHHHHHHHHHHHH
Confidence 33455666777776422 134689999999999999999865
No 221
>TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=88.72 E-value=2.7 Score=29.10 Aligned_cols=40 Identities=15% Similarity=0.051 Sum_probs=31.8
Q ss_pred CCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHH
Q psy6206 27 NRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRL 68 (83)
Q Consensus 27 ~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ 68 (83)
+...++....|.++|.++.+ .+.+.+++||++|+..++..
T Consensus 45 ~r~gnPt~~~lE~~lA~l~g--~~~~~~~~sG~~Ai~~al~a 84 (377)
T TIGR01324 45 GRRGTLTHFALQDAMCELEG--GAGCYLYPSGLAAVTNSILA 84 (377)
T ss_pred cCCCCccHHHHHHHHHHHhC--CCcEEEECcHHHHHHHHHHH
Confidence 34556777889999998875 35788999999999999863
No 222
>PRK13479 2-aminoethylphosphonate--pyruvate transaminase; Provisional
Probab=88.33 E-value=1.5 Score=29.53 Aligned_cols=38 Identities=13% Similarity=0.074 Sum_probs=28.7
Q ss_pred hHHHHHHHHHHhhCCCC--CCeEEeeCChHHHHHHHHHHH
Q psy6206 32 DNLVLCARKLASLLPDP--LSVCFFVNSGSEANDLALRLA 69 (83)
Q Consensus 32 ~~~~~la~~l~~~~p~~--~~~v~f~~sGseA~e~Alk~a 69 (83)
+...++.+.+.+++... .+.+.++.||+++++.++...
T Consensus 37 ~~~~~~~~~l~~l~~~~~~~~~i~~~~~gt~~l~~~~~~l 76 (368)
T PRK13479 37 ALTASVRAKLVAIATGEEGYTCVPLQGSGTFSVEAAIGSL 76 (368)
T ss_pred HHHHHHHHHHHHHhCCCCCceEEEEcCCcHHHHHHHHHhc
Confidence 45677777777777543 345889999999999998754
No 223
>PRK08363 alanine aminotransferase; Validated
Probab=88.18 E-value=6.5 Score=26.96 Aligned_cols=61 Identities=10% Similarity=-0.075 Sum_probs=35.1
Q ss_pred CHHHHHHHHHHHHhhc--cC-CCCcchHHHHHHHHHHhhCC--CCCCeEEeeCChHHHHHHHHHHH
Q psy6206 9 HPAVVKAACTQLALLN--TN-NRFLHDNLVLCARKLASLLP--DPLSVCFFVNSGSEANDLALRLA 69 (83)
Q Consensus 9 ~p~i~~a~~~~~~~~~--~~-~~~~~~~~~~la~~l~~~~p--~~~~~v~f~~sGseA~e~Alk~a 69 (83)
.|.+.+++.+.+.... .. .....+....+++.+....+ -+.+.|++++++++|+..++...
T Consensus 48 ~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~~ 113 (398)
T PRK08363 48 PEHMKEAYCRAIKEGHNYYGPSEGLPELREAIVKREKRKNGVDITPDDVRVTAAVTEALQLIFGAL 113 (398)
T ss_pred CHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHHhcCCCCChhhEEEeCCHHHHHHHHHHHh
Confidence 4567778877665421 11 11112333445544433212 23458999999999999988754
No 224
>PRK08960 hypothetical protein; Provisional
Probab=88.16 E-value=6.4 Score=26.87 Aligned_cols=61 Identities=23% Similarity=-0.007 Sum_probs=36.9
Q ss_pred CHHHHHHHHHHHHhh--cc-CCCCcchHHHHHHHHHHhhC--CCCCCeEEeeCChHHHHHHHHHHH
Q psy6206 9 HPAVVKAACTQLALL--NT-NNRFLHDNLVLCARKLASLL--PDPLSVCFFVNSGSEANDLALRLA 69 (83)
Q Consensus 9 ~p~i~~a~~~~~~~~--~~-~~~~~~~~~~~la~~l~~~~--p~~~~~v~f~~sGseA~e~Alk~a 69 (83)
.+.+.+++.+.+... .. ......+....+++.+.+.. +...+.|++++++++++..++...
T Consensus 47 ~~~v~~a~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~~ 112 (387)
T PRK08960 47 AEPIVAAGQAALAAGHTRYTAARGLPALREAIAGFYAQRYGVDVDPERILVTPGGSGALLLASSLL 112 (387)
T ss_pred CHHHHHHHHHHHhcCCCccCCCCCCHHHHHHHHHHHHHHhCCCCChhhEEEccCcHHHHHHHHHHh
Confidence 456888887777642 11 11111233355566554432 224568999999999999988643
No 225
>PRK07568 aspartate aminotransferase; Provisional
Probab=87.99 E-value=6.6 Score=26.78 Aligned_cols=60 Identities=13% Similarity=-0.014 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHhhc-cCC-CCcchHHHHHHHHHHhh-CCCCCCeEEeeCChHHHHHHHHHHH
Q psy6206 10 PAVVKAACTQLALLN-TNN-RFLHDNLVLCARKLASL-LPDPLSVCFFVNSGSEANDLALRLA 69 (83)
Q Consensus 10 p~i~~a~~~~~~~~~-~~~-~~~~~~~~~la~~l~~~-~p~~~~~v~f~~sGseA~e~Alk~a 69 (83)
+.+.+++.+...... ... ....+....+++.+... .+.+.+.|+++++|++++..+++..
T Consensus 46 ~~~~~a~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l 108 (397)
T PRK07568 46 EVFFEAIKNYDEEVLAYSHSQGIPELREAFAKYYKKWGIDVEPDEILITNGGSEAILFAMMAI 108 (397)
T ss_pred HHHHHHHHHHhcCCcCcCCCCCCHHHHHHHHHHHHHhCCCCCcceEEEcCChHHHHHHHHHHh
Confidence 456667665443321 111 11122334455444321 1234568999999999999988753
No 226
>PRK08361 aspartate aminotransferase; Provisional
Probab=87.90 E-value=4.8 Score=27.54 Aligned_cols=60 Identities=15% Similarity=-0.006 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHhh--cc-CCCCcchHHHHHHHHHHhhC--CCCCCeEEeeCChHHHHHHHHHHH
Q psy6206 10 PAVVKAACTQLALL--NT-NNRFLHDNLVLCARKLASLL--PDPLSVCFFVNSGSEANDLALRLA 69 (83)
Q Consensus 10 p~i~~a~~~~~~~~--~~-~~~~~~~~~~~la~~l~~~~--p~~~~~v~f~~sGseA~e~Alk~a 69 (83)
+.+.+++.+.+... .. ......+....+++.+.+.. +-..+.++++++|++|+..+++..
T Consensus 49 ~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l 113 (391)
T PRK08361 49 KNIKEAAKRALDEGWTHYTPNAGIPELREAIAEYYKKFYGVDVDVDNVIVTAGAYEATYLAFESL 113 (391)
T ss_pred HHHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCcccEEEeCChHHHHHHHHHHh
Confidence 56677776665432 11 11111223345555554332 223468999999999999988754
No 227
>PRK09082 methionine aminotransferase; Validated
Probab=87.85 E-value=5.4 Score=27.25 Aligned_cols=61 Identities=21% Similarity=-0.009 Sum_probs=37.7
Q ss_pred CHHHHHHHHHHHHhh-c-cC-CCCcchHHHHHHHHHHhhCCC--CC-CeEEeeCChHHHHHHHHHHH
Q psy6206 9 HPAVVKAACTQLALL-N-TN-NRFLHDNLVLCARKLASLLPD--PL-SVCFFVNSGSEANDLALRLA 69 (83)
Q Consensus 9 ~p~i~~a~~~~~~~~-~-~~-~~~~~~~~~~la~~l~~~~p~--~~-~~v~f~~sGseA~e~Alk~a 69 (83)
+|.+.+++.+.++.. . +. .....+....+++.+.+.... +. +.+.++++|++|++.+++..
T Consensus 45 ~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~~a~~l~~~~~~~~~~~~~i~~t~G~~~al~~~~~~~ 111 (386)
T PRK09082 45 PPYLVEALAYAMAAGHNQYPPMTGVAALREAIAAKTARLYGRQYDADSEITVTAGATEALFAAILAL 111 (386)
T ss_pred CHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEeCCHHHHHHHHHHHH
Confidence 567888887766543 1 11 111223345677766655432 12 36999999999999998754
No 228
>PLN02590 probable tyrosine decarboxylase
Probab=87.84 E-value=2.7 Score=30.70 Aligned_cols=41 Identities=24% Similarity=0.164 Sum_probs=29.3
Q ss_pred hHHHHHHHHHHhhCCCCC-------CeEEeeCChHHHHHHHHHHHHhh
Q psy6206 32 DNLVLCARKLASLLPDPL-------SVCFFVNSGSEANDLALRLARVH 72 (83)
Q Consensus 32 ~~~~~la~~l~~~~p~~~-------~~v~f~~sGseA~e~Alk~ar~~ 72 (83)
+....+.+.|.+++.-+. .--.|+++|||||-.||..||..
T Consensus 170 ~lE~~vi~wl~~l~glp~~~~~~~~~gG~~~sGgSeAnl~al~aAR~~ 217 (539)
T PLN02590 170 ELEIIVLDWLAKLLQLPDHFLSTGNGGGVIQGTGCEAVLVVVLAARDR 217 (539)
T ss_pred HHHHHHHHHHHHHhCCCcccccCCCCceEEcCchHHHHHHHHHHHHHH
Confidence 344556666777663211 23678999999999999999985
No 229
>PRK05968 hypothetical protein; Provisional
Probab=87.78 E-value=3.6 Score=28.46 Aligned_cols=51 Identities=16% Similarity=0.010 Sum_probs=34.8
Q ss_pred CCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhhcCCCceEE
Q psy6206 26 NNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVHTNNDDVIT 80 (83)
Q Consensus 26 ~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~~~r~~ii~ 80 (83)
++.+.++...+|.+++.++.+. +...+.+||+.|+..++.. ..-.|. +||+
T Consensus 57 Y~r~~~p~~~~le~~lA~l~g~--~~av~~~sG~~Ai~~al~a-l~~~Gd-~Vl~ 107 (389)
T PRK05968 57 YSRGDNPTVRAFEEMLAKLEGA--EDARGFASGMAAISSTVLS-FVEPGD-RIVA 107 (389)
T ss_pred ccCCCChhHHHHHHHHHHHhCC--CcEEEECCHHHHHHHHHHH-HhCCCC-EEEE
Confidence 3455566778899999998854 3456669999999998863 222343 4554
No 230
>TIGR03811 tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcus type. This model represents tyrosine decarboxylases in the family of the Enterococcus faecalis enzyme Tdc. These enzymes often are encoded next to tyrosine/tyramine antiporter, together comprising a system in which tyrosine decarboxylation can protect against exposure to acid conditions. This clade differs from the archaeal tyrosine decarboxylases associated with methanofuran biosynthesis.
Probab=87.76 E-value=1.7 Score=32.23 Aligned_cols=42 Identities=24% Similarity=0.093 Sum_probs=31.7
Q ss_pred chHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhh
Q psy6206 31 HDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVH 72 (83)
Q Consensus 31 ~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~ 72 (83)
+....++.+.|+++++-+...-.|+++||+||=.||-+||..
T Consensus 122 t~lE~~vi~~la~l~G~~~~~G~~TsGGT~ANl~aL~~AR~~ 163 (608)
T TIGR03811 122 SQMEEEVGKEFATLMGYKNGWGHIVADGSLANLEGLWYARNI 163 (608)
T ss_pred HHHHHHHHHHHHHHhCCCCCCeEEeCChHHHHHHHHHHHHHh
Confidence 345567778888887432234568999999999999999964
No 231
>PRK07810 O-succinylhomoserine sulfhydrylase; Provisional
Probab=87.62 E-value=4.8 Score=28.11 Aligned_cols=41 Identities=22% Similarity=0.267 Sum_probs=33.4
Q ss_pred CCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHH
Q psy6206 26 NNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRL 68 (83)
Q Consensus 26 ~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ 68 (83)
++.++++...+|.+.|.++.. .+.++..+||+.|+..++..
T Consensus 64 Y~r~~~p~~~~le~~lA~l~g--~~~al~~~sG~~Ai~~~l~a 104 (403)
T PRK07810 64 YSRYGNPTVSMFEERLRLIEG--AEACFATASGMSAVFTALGA 104 (403)
T ss_pred eeCCCCchHHHHHHHHHHHhC--CCcEEEECChHHHHHHHHHH
Confidence 456677778899999999875 45788999999999998864
No 232
>PRK12414 putative aminotransferase; Provisional
Probab=87.58 E-value=7.1 Score=26.71 Aligned_cols=61 Identities=18% Similarity=0.023 Sum_probs=38.3
Q ss_pred CHHHHHHHHHHHHhhc--c-CCCCcchHHHHHHHHHHhhCCCC---CCeEEeeCChHHHHHHHHHHH
Q psy6206 9 HPAVVKAACTQLALLN--T-NNRFLHDNLVLCARKLASLLPDP---LSVCFFVNSGSEANDLALRLA 69 (83)
Q Consensus 9 ~p~i~~a~~~~~~~~~--~-~~~~~~~~~~~la~~l~~~~p~~---~~~v~f~~sGseA~e~Alk~a 69 (83)
.|.+.+++.+.+.... + ......+....+++.+.+..+.. .+.+..+++|+++++.++...
T Consensus 44 ~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~it~g~~~al~~~~~~l 110 (384)
T PRK12414 44 DPALVEGVARAMRDGHNQYAPMAGIAALREALAEKTERLYGARYDPASEVTVIASASEGLYAAISAL 110 (384)
T ss_pred CHHHHHHHHHHHHhCCCCcCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEECChHHHHHHHHHHh
Confidence 5667888777655321 1 11112344566777776655432 247999999999999888743
No 233
>PRK06434 cystathionine gamma-lyase; Validated
Probab=87.46 E-value=3.5 Score=28.74 Aligned_cols=41 Identities=20% Similarity=0.093 Sum_probs=33.0
Q ss_pred CCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHH
Q psy6206 26 NNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRL 68 (83)
Q Consensus 26 ~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ 68 (83)
++.+.++...+|.+++.++.+. +.+..++||+.|+..++..
T Consensus 58 Y~r~~~P~~~~lE~~la~leg~--~~av~~sSG~aAi~~al~a 98 (384)
T PRK06434 58 YTRWGNPTVQAFEEKYAVLENA--EHALSFSSGMGAITSAILS 98 (384)
T ss_pred eeCCCChhHHHHHHHHHHHhCC--CcEEEeCCHHHHHHHHHHH
Confidence 3455677788899999998843 5688899999999999974
No 234
>TIGR02539 SepCysS Sep-tRNA:Cys-tRNA synthase. Aminoacylation of tRNA(Cys) with Cys, and cysteine biosynthesis in the process, happens in Methanocaldococcus jannaschii and several other archaea by misacylation of tRNA(Cys) with O-phosphoserine (Sep), followed by modification of the phosphoserine to cysteine. In some species, direct tRNA-cys aminoacylation also occurs but this pathway is required for Cys biosynthesis. Members of this protein catalyze the second step in this two step pathway, using pyridoxal phosphate and a sulfur donor to synthesize Cys from Sep while attached to the tRNA.
Probab=86.83 E-value=6.3 Score=26.84 Aligned_cols=36 Identities=11% Similarity=0.059 Sum_probs=27.5
Q ss_pred hHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHH
Q psy6206 32 DNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLA 69 (83)
Q Consensus 32 ~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~a 69 (83)
+...++.+.+.+... .+.+.++++|++++..++...
T Consensus 51 ~~~~~~~e~lA~~~g--~~~~~i~~g~~~a~~~~~~~l 86 (370)
T TIGR02539 51 PPIHDFLEDLAEFLG--MDEARVTHGAREGKFAVMHAL 86 (370)
T ss_pred hHHHHHHHHHHHHhC--CCceEEECChHHHHHHHHHHh
Confidence 356677788888884 456777899999999888744
No 235
>PRK01688 histidinol-phosphate aminotransferase; Provisional
Probab=86.78 E-value=2 Score=29.10 Aligned_cols=42 Identities=12% Similarity=0.064 Sum_probs=32.1
Q ss_pred CCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHH
Q psy6206 28 RFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLA 69 (83)
Q Consensus 28 ~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~a 69 (83)
.|+.....+|.+.+.+..+-+.+.|+++++++|++..+++..
T Consensus 53 ~Yp~~~~~~l~~~~a~~~g~~~~~I~~~~Gs~e~i~~~~~~~ 94 (351)
T PRK01688 53 RYPECQPKAVIENYAAYAGVKPEQVLVSRGADEGIELLIRAF 94 (351)
T ss_pred cCCCCChHHHHHHHHHHhCCCHHHEEEcCCHHHHHHHHHHHh
Confidence 355444567888888777656679999999999999988753
No 236
>PRK03321 putative aminotransferase; Provisional
Probab=86.54 E-value=3.3 Score=27.79 Aligned_cols=55 Identities=20% Similarity=0.087 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHhhccCCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHH
Q psy6206 10 PAVVKAACTQLALLNTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALR 67 (83)
Q Consensus 10 p~i~~a~~~~~~~~~~~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk 67 (83)
|.+.+++.+.+..+. .++.+...++.+.+.+.+..+.+.+.++++.+++...++.
T Consensus 38 ~~~~~a~~~~~~~~~---~y~~~g~~~lr~~ia~~~~~~~~~I~~~~G~~~~l~~~~~ 92 (352)
T PRK03321 38 PSVRAAIARAAAGVN---RYPDMGAVELRAALAEHLGVPPEHVAVGCGSVALCQQLVQ 92 (352)
T ss_pred HHHHHHHHHHHHhcC---cCCCCcHHHHHHHHHHHhCcCHHHEEECCCHHHHHHHHHH
Confidence 578888877665432 2233334566666666664445689888777777776665
No 237
>PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=86.38 E-value=6.5 Score=27.89 Aligned_cols=41 Identities=20% Similarity=0.160 Sum_probs=31.8
Q ss_pred CCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHH
Q psy6206 26 NNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRL 68 (83)
Q Consensus 26 ~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ 68 (83)
++...++....+.+.|.++... ...+..+||++|+..++..
T Consensus 63 Y~r~~~pt~~~le~~la~l~g~--~~~v~fsSG~~Ai~~al~~ 103 (437)
T PRK05613 63 YSRLTNPTVEALENRIASLEGG--VHAVAFASGQAAETAAILN 103 (437)
T ss_pred eeCccChHHHHHHHHHHHHhCC--CeEEEeCCHHHHHHHHHHH
Confidence 3445567788899999888753 5788889999999988863
No 238
>PRK09028 cystathionine beta-lyase; Provisional
Probab=86.33 E-value=4.2 Score=28.46 Aligned_cols=50 Identities=16% Similarity=0.050 Sum_probs=33.5
Q ss_pred CCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhhcCCCceEEe
Q psy6206 28 RFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVHTNNDDVITQ 81 (83)
Q Consensus 28 ~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~~~r~~ii~~ 81 (83)
...++....|.++|.++-+. ..+.+++||++|+..++... .-.| .+||+.
T Consensus 57 r~~npt~~~Le~~iA~le~~--~~~~~~~sG~~Ai~~~l~al-l~~G-D~Vvv~ 106 (394)
T PRK09028 57 RRGTPTHFAFQAAIVELEGG--AGTALYPSGAAAISNALLSF-LKAG-DHLLMV 106 (394)
T ss_pred CCCCchHHHHHHHHHHHhCC--CcEEEECCHHHHHHHHHHHH-hCCC-CEEEEE
Confidence 33455566888888887543 46889999999999988632 2223 356554
No 239
>PRK07582 cystathionine gamma-lyase; Validated
Probab=86.27 E-value=4 Score=28.02 Aligned_cols=51 Identities=20% Similarity=0.178 Sum_probs=35.0
Q ss_pred CCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhhcCCCceEEe
Q psy6206 26 NNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVHTNNDDVITQ 81 (83)
Q Consensus 26 ~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~~~r~~ii~~ 81 (83)
++.++++...+|.++|.+.. . ..+.+..||++|+..++... .-.| .+||+.
T Consensus 45 y~ry~~p~~~~Le~~lA~l~-~--~~~v~~~sG~~Ai~~~l~al-l~~G-d~Vl~~ 95 (366)
T PRK07582 45 YGRASNPTWRALEAALGELE-G--AEALVFPSGMAAITAVLRAL-LRPG-DTVVVP 95 (366)
T ss_pred eECCCCccHHHHHHHHHHHc-C--CCEEEECCHHHHHHHHHHHh-cCCC-CEEEEe
Confidence 34567777888999999887 2 35667799999999887532 2223 355553
No 240
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
Probab=86.13 E-value=1.7 Score=30.49 Aligned_cols=57 Identities=18% Similarity=0.146 Sum_probs=35.4
Q ss_pred CHHHHHHHHHHHHhhccCCCCcchHHHHHHHHHHhhCCCC-CCeEEeeCChHHHHHHHHH
Q psy6206 9 HPAVVKAACTQLALLNTNNRFLHDNLVLCARKLASLLPDP-LSVCFFVNSGSEANDLALR 67 (83)
Q Consensus 9 ~p~i~~a~~~~~~~~~~~~~~~~~~~~~la~~l~~~~p~~-~~~v~f~~sGseA~e~Alk 67 (83)
+|+|.+++.++.-. |. +.-+...+.++.+.|..++..+ .+-+.+..||+-++|+|+-
T Consensus 17 ~~~V~~am~~~~~~-h~-s~~F~~~~~~~~~~L~~v~~t~~~~~~ll~gsGt~amEAav~ 74 (383)
T COG0075 17 PPRVLLAMARPMVG-HR-SPDFVGIMKEVLEKLRKVFGTENGDVVLLSGSGTLAMEAAVA 74 (383)
T ss_pred CHHHHHHhcCCCCC-CC-CHHHHHHHHHHHHHHHHHhcCCCCcEEEEcCCcHHHHHHHHH
Confidence 46666666553322 11 1122345567777777777643 3456677899999999886
No 241
>PRK08247 cystathionine gamma-synthase; Reviewed
Probab=85.85 E-value=3.7 Score=28.08 Aligned_cols=50 Identities=22% Similarity=0.232 Sum_probs=35.6
Q ss_pred CCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhhcCCCceEE
Q psy6206 26 NNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVHTNNDDVIT 80 (83)
Q Consensus 26 ~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~~~r~~ii~ 80 (83)
++.++++...+|.++|.++.+. +..+.++||++|+..++.+. -.| .+||.
T Consensus 46 y~r~~~pt~~~le~~la~l~g~--~~~~~~~sG~~ai~~~~~ll--~~G-d~Vl~ 95 (366)
T PRK08247 46 YSRTGNPTRGVLEQAIADLEGG--DQGFACSSGMAAIQLVMSLF--RSG-DELIV 95 (366)
T ss_pred ccCCCCchHHHHHHHHHHHhCC--CcEEEEcCHHHHHHHHHHHh--CCC-CEEEE
Confidence 4556777888999999998854 34688899999998776432 234 35554
No 242
>PRK05939 hypothetical protein; Provisional
Probab=85.75 E-value=8 Score=26.98 Aligned_cols=52 Identities=8% Similarity=0.036 Sum_probs=35.5
Q ss_pred CCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhhcCCCceEEe
Q psy6206 26 NNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVHTNNDDVITQ 81 (83)
Q Consensus 26 ~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~~~r~~ii~~ 81 (83)
++...++....|.+.|.++-+. ......+||..|+..++... .-.|. +||+.
T Consensus 41 Y~r~g~p~~~~lE~~la~leg~--~~~v~~ssG~~Ai~~~l~al-l~~Gd-~Vv~~ 92 (397)
T PRK05939 41 YARQGTPTTAALEAKITKMEGG--VGTVCFATGMAAIAAVFLTL-LRAGD-HLVSS 92 (397)
T ss_pred cCCCCCHHHHHHHHHHHHHhCC--CeEEEeCCHHHHHHHHHHHH-cCCCC-EEEEC
Confidence 3455677788899999998754 34666788999999888643 22233 55553
No 243
>PRK05957 aspartate aminotransferase; Provisional
Probab=85.75 E-value=9.2 Score=26.21 Aligned_cols=61 Identities=15% Similarity=-0.070 Sum_probs=38.2
Q ss_pred CHHHHHHHHHHHHhhc---c-CCCCcchHHHHHHHHHHhhCCCC---CCeEEeeCChHHHHHHHHHHH
Q psy6206 9 HPAVVKAACTQLALLN---T-NNRFLHDNLVLCARKLASLLPDP---LSVCFFVNSGSEANDLALRLA 69 (83)
Q Consensus 9 ~p~i~~a~~~~~~~~~---~-~~~~~~~~~~~la~~l~~~~p~~---~~~v~f~~sGseA~e~Alk~a 69 (83)
.+.+.+++.+.+.... + ......+....+++.+.+..+.. .+.+++++++++++..++...
T Consensus 42 ~~~~~~a~~~~~~~~~~~~Y~~~~G~~~lr~~~~~~l~~~~g~~~~~~~~i~~t~G~~~~l~~~~~~~ 109 (389)
T PRK05957 42 PPEAIEALNNFLANPENHKYQAVQGIPPLLEAITQKLQQDNGIELNNEQAIVVTAGSNMAFMNAILAI 109 (389)
T ss_pred CHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCeEEEeCChHHHHHHHHHHh
Confidence 4567888877665431 1 11112244566777776665432 457999999999998877644
No 244
>PRK07683 aminotransferase A; Validated
Probab=85.70 E-value=9.2 Score=26.18 Aligned_cols=61 Identities=18% Similarity=0.007 Sum_probs=37.2
Q ss_pred CHHHHHHHHHHHHhhc--cC-CCCcchHHHHHHHHHHhhC--CCCCC-eEEeeCChHHHHHHHHHHH
Q psy6206 9 HPAVVKAACTQLALLN--TN-NRFLHDNLVLCARKLASLL--PDPLS-VCFFVNSGSEANDLALRLA 69 (83)
Q Consensus 9 ~p~i~~a~~~~~~~~~--~~-~~~~~~~~~~la~~l~~~~--p~~~~-~v~f~~sGseA~e~Alk~a 69 (83)
.+.+.+++.+.++... .. .....+....+++.+.... +.+.+ .+++++++++|+..++...
T Consensus 43 ~~~~~~a~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l 109 (387)
T PRK07683 43 PSHVKEAAKRAITENYTSYTHNAGLLELRKAACNFVKDKYDLHYSPESEIIVTIGASEAIDIAFRTI 109 (387)
T ss_pred CHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEeCChHHHHHHHHHHh
Confidence 3577888888776431 11 1112233455666664332 22344 7999999999999988754
No 245
>PRK06107 aspartate aminotransferase; Provisional
Probab=85.31 E-value=7.2 Score=26.85 Aligned_cols=60 Identities=13% Similarity=-0.160 Sum_probs=38.1
Q ss_pred CHHHHHHHHHHHHhh--ccCC-CCcchHHHHHHHHHHhhCCC--CCCeEEeeCChHHHHHHHHHH
Q psy6206 9 HPAVVKAACTQLALL--NTNN-RFLHDNLVLCARKLASLLPD--PLSVCFFVNSGSEANDLALRL 68 (83)
Q Consensus 9 ~p~i~~a~~~~~~~~--~~~~-~~~~~~~~~la~~l~~~~p~--~~~~v~f~~sGseA~e~Alk~ 68 (83)
.|.+.+++.+.++.. .+.. ....+....+++.+.+..+. ..+.|.+++++++|+..+++.
T Consensus 48 ~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~ 112 (402)
T PRK06107 48 PDHIKQAAVAAIERGETKYTLVNGTPALRKAIIAKLERRNGLHYADNEITVGGGAKQAIFLALMA 112 (402)
T ss_pred CHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCChhhEEEeCCHHHHHHHHHHH
Confidence 467778887777542 1111 11224446677777655432 345799999999999999863
No 246
>PLN00143 tyrosine/nicotianamine aminotransferase; Provisional
Probab=85.31 E-value=3.6 Score=28.48 Aligned_cols=60 Identities=10% Similarity=-0.007 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHhh--c-c-CCCCcchHHHHHHHHHHhhC--CCCCCeEEeeCChHHHHHHHHHHH
Q psy6206 10 PAVVKAACTQLALL--N-T-NNRFLHDNLVLCARKLASLL--PDPLSVCFFVNSGSEANDLALRLA 69 (83)
Q Consensus 10 p~i~~a~~~~~~~~--~-~-~~~~~~~~~~~la~~l~~~~--p~~~~~v~f~~sGseA~e~Alk~a 69 (83)
|.+.+++.+.++.. . + ......+....+++.+.... +-..+.|.+++++++++..+++..
T Consensus 52 ~~~~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~I~it~G~~~al~~~~~~l 117 (409)
T PLN00143 52 NIAEDAIVEAVRSAKFNSYAPTGGILPARRAIADYLSNDLPYQLSPDDVYLTLGCKHAAEIIIKVL 117 (409)
T ss_pred HHHHHHHHHHHhCcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCHhhEEEecChHHHHHHHHHHH
Confidence 55778887777642 1 1 11112234455665554432 223468999999999999988843
No 247
>PRK08249 cystathionine gamma-synthase; Provisional
Probab=85.19 E-value=5.8 Score=27.65 Aligned_cols=41 Identities=15% Similarity=0.035 Sum_probs=32.4
Q ss_pred CCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHH
Q psy6206 26 NNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRL 68 (83)
Q Consensus 26 ~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ 68 (83)
++.+.++....|.++|.++.+. +.+...+||++|+..++..
T Consensus 58 y~r~~~p~~~~le~~lA~l~g~--~~~i~~ssG~~Ai~~~l~a 98 (398)
T PRK08249 58 YSRNTNPTVQAFEEKVRILEGA--EAATAFSTGMAAISNTLYT 98 (398)
T ss_pred ccCCCChHHHHHHHHHHHHhCC--CeEEEeCChHHHHHHHHHH
Confidence 4456677788999999998853 4678889999999988763
No 248
>KOG2433|consensus
Probab=85.14 E-value=2.9 Score=29.91 Aligned_cols=61 Identities=25% Similarity=0.189 Sum_probs=39.0
Q ss_pred CHHHHHHHHHHHHhh--ccCCC-CcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhh
Q psy6206 9 HPAVVKAACTQLALL--NTNNR-FLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVH 72 (83)
Q Consensus 9 ~p~i~~a~~~~~~~~--~~~~~-~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~ 72 (83)
|.+|.+++.+.-++- ...+. +.... +..=-|.+++.- ..++.+.+||+|-.+.+-.+||.+
T Consensus 435 HrEiQqaLvdi~DKpA~FVGSrQWIGSt--Eis~vLn~ll~~-~skil~v~sGaEva~~~rELA~HF 498 (577)
T KOG2433|consen 435 HREIQQALVDIQDKPAKFVGSRQWIGST--EISFVLNELLKL-ESKILAVNSGAEVAERVRELARHF 498 (577)
T ss_pred HHHHHHHHHhccCcccceecccceecch--hHHHHHHHHhcc-ceEEEEeccccHHHHHHHHHHHHh
Confidence 678888888866653 12222 21111 222223444432 349999999999999999999987
No 249
>cd00378 SHMT Serine-glycine hydroxymethyltransferase (SHMT). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl group of N5, N10-methylene tetrahydrofolate to glycine resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers; the mammalian enzyme forms a homotetramer comprising four pyridoxal phosphate-bound active sites.
Probab=85.06 E-value=5.6 Score=27.14 Aligned_cols=62 Identities=21% Similarity=0.176 Sum_probs=34.2
Q ss_pred CCCHHHHHHHHHHHH-hhc--c-CCC-Cc-c---hHHHH-HHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHH
Q psy6206 7 HCHPAVVKAACTQLA-LLN--T-NNR-FL-H---DNLVL-CARKLASLLPDPLSVCFFVNSGSEANDLALRLA 69 (83)
Q Consensus 7 h~~p~i~~a~~~~~~-~~~--~-~~~-~~-~---~~~~~-la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~a 69 (83)
+-+|++.+++.+.+. +.. . ... +. . +...+ ..+.+.+.++.+...+++ +||++|+..++...
T Consensus 30 ~~~~~v~~a~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~v~~-~sgt~a~~~~l~~l 101 (402)
T cd00378 30 FTSPAVMEAMGSDLTNKYAEGYPGKRYYGGCEYVDEIEDLAIERAKKLFGAEYANVQP-HSGSQANLAVYFAL 101 (402)
T ss_pred cCCHHHHHHhcccccccccCCCCCCcccCCchHHHHHHHHHHHHHHHHhCCCceeeec-CCcHHHHHHHHHHh
Confidence 347899999887653 211 1 111 11 1 22233 233455666544334444 57999999888754
No 250
>PRK13355 bifunctional HTH-domain containing protein/aminotransferase; Provisional
Probab=85.01 E-value=3.9 Score=29.29 Aligned_cols=61 Identities=15% Similarity=-0.034 Sum_probs=35.9
Q ss_pred CHHHHHHHHHHHHhhc-cCCCC-cchHHHHHHHHHHhhC--CCCCCeEEeeCChHHHHHHHHHHH
Q psy6206 9 HPAVVKAACTQLALLN-TNNRF-LHDNLVLCARKLASLL--PDPLSVCFFVNSGSEANDLALRLA 69 (83)
Q Consensus 9 ~p~i~~a~~~~~~~~~-~~~~~-~~~~~~~la~~l~~~~--p~~~~~v~f~~sGseA~e~Alk~a 69 (83)
.+++++++.+.+.... ++... ..+....+++.+...- .-..+.|+.+++++|++..+++..
T Consensus 164 p~~~~~~~~~~~~~~~~Y~~~~G~~~lReaia~~~~~~~~~~~~~~~I~it~G~~eal~~~~~~l 228 (517)
T PRK13355 164 PDEVVYDMAQQLTDTEGYSDSKGLFSARKAIMQYAQLKGLPNVDVDDIYTGNGVSELINLSMSAL 228 (517)
T ss_pred CHHHHHHHHHHhhcCCCCCCCcChHHHHHHHHHHHHhcCCCCCChhHEEEeCcHHHHHHHHHHHh
Confidence 4567888877765432 11111 1223344555553321 123468999999999999988743
No 251
>COG0079 HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism]
Probab=84.94 E-value=10 Score=26.19 Aligned_cols=59 Identities=22% Similarity=0.176 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHhhccCCCCcchHHHHHHHHHHhhCC-CCCCeEEeeCChHHHHHHHHHHHHh
Q psy6206 10 PAVVKAACTQLALLNTNNRFLHDNLVLCARKLASLLP-DPLSVCFFVNSGSEANDLALRLARV 71 (83)
Q Consensus 10 p~i~~a~~~~~~~~~~~~~~~~~~~~~la~~l~~~~p-~~~~~v~f~~sGseA~e~Alk~ar~ 71 (83)
|++.+++.+.++.+ ..||.+...++.+.+.+... ...+.|+..+...|.++..++....
T Consensus 38 ~~~~~~~~~~~~~~---~rYPd~~~~~l~~a~a~~~~~~~~~~V~~gnGsde~i~~l~~~~~~ 97 (356)
T COG0079 38 PKVIEAIRAALDKL---NRYPDPDYRELRAALAEYYGVVDPENVLVGNGSDELIELLVRAFVE 97 (356)
T ss_pred HHHHHHHHHHHHhh---ccCCCCcHHHHHHHHHHHhCCCCcceEEEcCChHHHHHHHHHHhhc
Confidence 77888888877754 34555556778888877775 4556899899999999987765443
No 252
>PRK08574 cystathionine gamma-synthase; Provisional
Probab=84.75 E-value=4.1 Score=28.22 Aligned_cols=41 Identities=22% Similarity=0.041 Sum_probs=31.8
Q ss_pred CCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHH
Q psy6206 26 NNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRL 68 (83)
Q Consensus 26 ~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ 68 (83)
++.+.++...+|.+++.++.+. +.+..++||++|+..++..
T Consensus 47 y~r~~np~~~~lE~~lA~l~g~--~~~l~~~sG~~Ai~~~l~~ 87 (385)
T PRK08574 47 YSREENPTLRPLEEALAKLEGG--VDALAFNSGMAAISTLFFS 87 (385)
T ss_pred EECCCCccHHHHHHHHHHHhCC--CcEEEeCCHHHHHHHHHHH
Confidence 3455567788899999998854 4667779999999998873
No 253
>cd00615 Orn_deC_like Ornithine decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life.
Probab=84.56 E-value=5.4 Score=26.30 Aligned_cols=39 Identities=18% Similarity=0.115 Sum_probs=27.7
Q ss_pred CcchHHHHHHHHHHhhCCCCCCeEEe-eCChHHHHHHHHHHH
Q psy6206 29 FLHDNLVLCARKLASLLPDPLSVCFF-VNSGSEANDLALRLA 69 (83)
Q Consensus 29 ~~~~~~~~la~~l~~~~p~~~~~v~f-~~sGseA~e~Alk~a 69 (83)
.+.....++.+++.+.+.. ++++| ++++++++..++...
T Consensus 56 ~~~g~i~~~~~~~A~~~ga--~~~~~~~~Gst~a~~~~l~al 95 (294)
T cd00615 56 DPTGPIKEAQELAARAFGA--KHTFFLVNGTSSSNKAVILAV 95 (294)
T ss_pred CCChHHHHHHHHHHHHhCC--CCEEEEcCcHHHHHHHHHHHc
Confidence 3456667777888888853 45665 777889998887643
No 254
>PRK06234 methionine gamma-lyase; Provisional
Probab=84.55 E-value=4.8 Score=27.99 Aligned_cols=40 Identities=23% Similarity=0.121 Sum_probs=32.3
Q ss_pred CCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHH
Q psy6206 26 NNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALR 67 (83)
Q Consensus 26 ~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk 67 (83)
+..++++...+|.+.|.+.... +.+..++||++|+..++.
T Consensus 58 Y~r~~~p~~~~Le~~iA~~~g~--~~~l~~~sG~~Ai~~al~ 97 (400)
T PRK06234 58 YSRLGNPTSTEVENKLALLEGG--EAAVVAASGMGAISSSLW 97 (400)
T ss_pred ccCCCCccHHHHHHHHHHHhCC--CcEEEEcCHHHHHHHHHH
Confidence 4456677788999999998854 468899999999988875
No 255
>PRK08045 cystathionine gamma-synthase; Provisional
Probab=84.48 E-value=4.1 Score=28.27 Aligned_cols=41 Identities=22% Similarity=0.166 Sum_probs=33.3
Q ss_pred CCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHH
Q psy6206 26 NNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRL 68 (83)
Q Consensus 26 ~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ 68 (83)
++.++++....|.++|.+..+. ..+..++||++|+..++..
T Consensus 46 Y~R~~~pt~~~L~~~lA~l~g~--~~~i~~~sg~~Ai~~~l~~ 86 (386)
T PRK08045 46 YSRRGNPTRDVVQRALAELEGG--AGAVLTNTGMSAIHLVTTV 86 (386)
T ss_pred eeCCCCccHHHHHHHHHHHhCC--CeEEEECCHHHHHHHHHHH
Confidence 4566777788999999998753 4699999999999998873
No 256
>PTZ00433 tyrosine aminotransferase; Provisional
Probab=83.98 E-value=4.1 Score=28.17 Aligned_cols=59 Identities=14% Similarity=-0.014 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHhhccCCCCc-----chHHHHHHHHHHhhC--------CCCCCeEEeeCChHHHHHHHHHHH
Q psy6206 10 PAVVKAACTQLALLNTNNRFL-----HDNLVLCARKLASLL--------PDPLSVCFFVNSGSEANDLALRLA 69 (83)
Q Consensus 10 p~i~~a~~~~~~~~~~~~~~~-----~~~~~~la~~l~~~~--------p~~~~~v~f~~sGseA~e~Alk~a 69 (83)
+.+.+++.+.+.... ...|+ .+....+++.+.+.. +-+.+.+.+++++++++..+++..
T Consensus 53 ~~~~~a~~~~~~~~~-~~~Y~~~~G~~~Lr~aia~~~~~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~~ 124 (412)
T PTZ00433 53 AIQTKALVEAVDSQE-CNGYPPTVGSPEAREAVATYWRNSFVHKESLKSTIKKDNVVLCSGVSHAILMALTAL 124 (412)
T ss_pred HHHHHHHHHHhhcCC-CCCCCCCCCcHHHHHHHHHHHHhhccccccccCCCChhhEEEeCChHHHHHHHHHHh
Confidence 456777766665311 11222 233344555554321 123468999999999999988854
No 257
>PLN02483 serine palmitoyltransferase
Probab=83.88 E-value=14 Score=26.60 Aligned_cols=61 Identities=10% Similarity=0.029 Sum_probs=40.2
Q ss_pred CCCCHHHHHHHHHHHHhhcc---CCC--C-cchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHH
Q psy6206 6 GHCHPAVVKAACTQLALLNT---NNR--F-LHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRL 68 (83)
Q Consensus 6 Gh~~p~i~~a~~~~~~~~~~---~~~--~-~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ 68 (83)
+..+|.+.+++.+.+++... .+. + .++...++.+.|.+.... .+.+.| ++|+.++..++..
T Consensus 114 ~~~~~~~~~~~~~ai~~~g~~~~~sr~~~g~~~~~~ele~~lA~~~g~-~~ai~~-~~G~~an~~~i~a 180 (489)
T PLN02483 114 AAADEYCTPRVIESLKKYSASTCSSRVDGGTTKLHRELEELVARFVGK-PAAIVF-GMGYATNSTIIPA 180 (489)
T ss_pred CCCCHHHHHHHHHHHHHhCCCCCccccccCCcHHHHHHHHHHHHHhCC-CcEEEE-CCHHHHHHHHHHH
Confidence 33467788888888877521 222 2 356778899999998863 334444 7788888766653
No 258
>PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated
Probab=83.67 E-value=5.7 Score=27.49 Aligned_cols=40 Identities=15% Similarity=0.021 Sum_probs=30.5
Q ss_pred CCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHH
Q psy6206 26 NNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALR 67 (83)
Q Consensus 26 ~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk 67 (83)
++.+.++....|.+++.++.+. +..++.+||+.|+..++.
T Consensus 44 y~r~~~p~~~~Le~~la~l~g~--~~al~~~SG~~Al~~~l~ 83 (380)
T PRK06176 44 YSRSGNPTRFALEELIADLEGG--VKGFAFASGLAGIHAVFS 83 (380)
T ss_pred ccCCCChhHHHHHHHHHHHhCC--CCEEEECCHHHHHHHHHH
Confidence 3455677788999999998753 356777999999987664
No 259
>PRK06207 aspartate aminotransferase; Provisional
Probab=83.31 E-value=11 Score=26.06 Aligned_cols=60 Identities=17% Similarity=-0.005 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHhhc---cC-CCCcchHHHHHHHHHHhhCC--CCC-CeEEeeCChHHHHHHHHHHH
Q psy6206 10 PAVVKAACTQLALLN---TN-NRFLHDNLVLCARKLASLLP--DPL-SVCFFVNSGSEANDLALRLA 69 (83)
Q Consensus 10 p~i~~a~~~~~~~~~---~~-~~~~~~~~~~la~~l~~~~p--~~~-~~v~f~~sGseA~e~Alk~a 69 (83)
|.+.+++.+.+.... +. .....+....+++.+.+..+ -+. +.|++++++++++..+++..
T Consensus 56 ~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~l~~~~g~~~~~~~~I~it~Ga~~al~~~~~~l 122 (405)
T PRK06207 56 PGAFELFSAGVERGGVQAYTEYRGDADIRELLAARLAAFTGAPVDAADELIITPGTQGALFLAVAAT 122 (405)
T ss_pred HHHHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCEEEeCCcHHHHHHHHHHh
Confidence 557777777665421 11 11122344667777766543 233 68999999999999888743
No 260
>PRK07777 aminotransferase; Validated
Probab=83.17 E-value=12 Score=25.50 Aligned_cols=58 Identities=14% Similarity=-0.042 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHhhc--cC-CCCcchHHHHHHHHHHhhCC--CCCC-eEEeeCChHHHHHHHHH
Q psy6206 10 PAVVKAACTQLALLN--TN-NRFLHDNLVLCARKLASLLP--DPLS-VCFFVNSGSEANDLALR 67 (83)
Q Consensus 10 p~i~~a~~~~~~~~~--~~-~~~~~~~~~~la~~l~~~~p--~~~~-~v~f~~sGseA~e~Alk 67 (83)
+.+.+++.+.+.... +. .....+....+++.+.+..+ ...+ +|+++++|++|++.++.
T Consensus 40 ~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~~i~~t~G~~~al~~~~~ 103 (387)
T PRK07777 40 PEMLEAAQEAIAGGVNQYPPGPGIPELRAAIAAQRRRRYGLEYDPDTEVLVTVGATEAIAAAVL 103 (387)
T ss_pred HHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEeCCcHHHHHHHHH
Confidence 556666666554321 11 11112333445555544332 2223 69999999999998886
No 261
>PRK07811 cystathionine gamma-synthase; Provisional
Probab=83.03 E-value=6.4 Score=27.25 Aligned_cols=41 Identities=24% Similarity=0.135 Sum_probs=30.2
Q ss_pred CCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHH
Q psy6206 27 NRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLA 69 (83)
Q Consensus 27 ~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~a 69 (83)
..++++...+|.++|.+.... +.....+||++|+..++...
T Consensus 56 ~r~~~p~~~~Le~~lA~~~g~--~~~i~~~sG~~Ai~~~l~al 96 (388)
T PRK07811 56 ARTGNPTRTALEEQLAALEGG--AYGRAFSSGMAATDCLLRAV 96 (388)
T ss_pred cCCCCccHHHHHHHHHHHhCC--CceEEeCCHHHHHHHHHHHH
Confidence 345566678899999998754 34455589999999999754
No 262
>PRK09265 aminotransferase AlaT; Validated
Probab=82.74 E-value=13 Score=25.57 Aligned_cols=61 Identities=10% Similarity=-0.003 Sum_probs=33.4
Q ss_pred CHHHHHHHHHHHHhhc-cCCCC-cchHHHHHHHHHHhhC--CCCCCeEEeeCChHHHHHHHHHHH
Q psy6206 9 HPAVVKAACTQLALLN-TNNRF-LHDNLVLCARKLASLL--PDPLSVCFFVNSGSEANDLALRLA 69 (83)
Q Consensus 9 ~p~i~~a~~~~~~~~~-~~~~~-~~~~~~~la~~l~~~~--p~~~~~v~f~~sGseA~e~Alk~a 69 (83)
.|++.+++.+.+.... +.... ..+....+++.+...- +...+.|.+++++++++..+++..
T Consensus 51 ~~~i~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~~~i~~t~G~~~~l~~~~~~~ 115 (404)
T PRK09265 51 PDEILRDVIRNLPTAQGYSDSKGLFSARKAIMQYYQQKGIPDVDVDDIYIGNGVSELIVMAMQAL 115 (404)
T ss_pred CHHHHHHHHHHhhcCCCCCCCCCcHHHHHHHHHHHhccCCCCCCcccEEEeCChHHHHHHHHHHh
Confidence 4567777776554331 11111 1122234444443211 233568999999999999888754
No 263
>PRK07504 O-succinylhomoserine sulfhydrylase; Reviewed
Probab=82.65 E-value=10 Score=26.35 Aligned_cols=41 Identities=15% Similarity=0.149 Sum_probs=31.0
Q ss_pred CCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHH
Q psy6206 26 NNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRL 68 (83)
Q Consensus 26 ~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ 68 (83)
...++++...+|.++|.++.+. +....++||+.|+..++..
T Consensus 59 y~r~~~p~~~~Le~~lA~l~G~--~~~~~~~sG~~Ai~~~l~~ 99 (398)
T PRK07504 59 YSRYSNPTVDMFEKRMCALEGA--EDARATASGMAAVTAAILC 99 (398)
T ss_pred eecCCCchHHHHHHHHHHHhCC--CeeeEecCHHHHHHHHHHH
Confidence 3456677788999999998743 4455678999999877753
No 264
>PRK06425 histidinol-phosphate aminotransferase; Validated
Probab=82.27 E-value=4 Score=27.37 Aligned_cols=42 Identities=2% Similarity=-0.192 Sum_probs=33.7
Q ss_pred CCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHH
Q psy6206 27 NRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRL 68 (83)
Q Consensus 27 ~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ 68 (83)
..|+.+...+|.+.|.+......++|..+++++|++..++.+
T Consensus 35 ~~Yp~~~~~~lr~~ia~~~~~~~~~I~it~Gs~~~l~~~~~~ 76 (332)
T PRK06425 35 SIYPEISYTDIEDQIKIYTQGLKIKVLIGPGLTHFIYRLLSY 76 (332)
T ss_pred ccCcCcCHHHHHHHHHHHhCCCcceEEECCCHHHHHHHHHHH
Confidence 345655678899999988766667899999999999998864
No 265
>PRK07324 transaminase; Validated
Probab=82.15 E-value=8.8 Score=26.22 Aligned_cols=58 Identities=17% Similarity=0.040 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHhhccCCCCcchHHHHHHHHHHhhCC-CCCCeEEeeCChHHHHHHHHHHH
Q psy6206 10 PAVVKAACTQLALLNTNNRFLHDNLVLCARKLASLLP-DPLSVCFFVNSGSEANDLALRLA 69 (83)
Q Consensus 10 p~i~~a~~~~~~~~~~~~~~~~~~~~~la~~l~~~~p-~~~~~v~f~~sGseA~e~Alk~a 69 (83)
+.+ +++.+++......... ..-..+|.+.+.+... .+.+.|.+++++++|+..++...
T Consensus 42 ~~~-~~~~~~~~~~~~~Y~~-~~G~~~lr~~ia~~~~~~~~~~vi~t~G~~~al~~~~~~l 100 (373)
T PRK07324 42 KNP-EAFYQELGQKKLTYGW-IEGSPEFKEAVASLYQNVKPENILQTNGATGANFLVLYAL 100 (373)
T ss_pred cch-HHHHHHHhcCCccCCC-CCCCHHHHHHHHHHhcCCChhhEEEcCChHHHHHHHHHHh
Confidence 345 6777766653211010 1112245555555432 23468999999999999988744
No 266
>PRK08354 putative aminotransferase; Provisional
Probab=81.75 E-value=13 Score=24.71 Aligned_cols=52 Identities=12% Similarity=-0.024 Sum_probs=36.0
Q ss_pred CHHHHHHHHHHHHhhccCCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHH
Q psy6206 9 HPAVVKAACTQLALLNTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRL 68 (83)
Q Consensus 9 ~p~i~~a~~~~~~~~~~~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ 68 (83)
.|.+.+++.+.+.... .++ ....+.+.+.+..+ +.+..+++++|++...+.+
T Consensus 22 p~~~~~a~~~~~~~~~---~yp--~~~~l~~~ia~~~~---~~I~vt~G~~~al~~~~~~ 73 (311)
T PRK08354 22 PEWLDEMFERAKEISG---RYT--YYEWLEEEFSKLFG---EPIVITAGITEALYLIGIL 73 (311)
T ss_pred CHHHHHHHHHHHHHhh---cCC--ChHHHHHHHHHHHC---CCEEECCCHHHHHHHHHHh
Confidence 5788888877655432 233 23457777777765 3799999999999877643
No 267
>PRK13238 tnaA tryptophanase/L-cysteine desulfhydrase, PLP-dependent; Provisional
Probab=81.53 E-value=7.1 Score=27.86 Aligned_cols=53 Identities=4% Similarity=0.064 Sum_probs=35.0
Q ss_pred HHHHHHHHHHhhccCCCC-cchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHH
Q psy6206 12 VVKAACTQLALLNTNNRF-LHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRL 68 (83)
Q Consensus 12 i~~a~~~~~~~~~~~~~~-~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ 68 (83)
+.+++.+.+..... .| .++-..+|.+.+++... .+.+.++++|++|+..++..
T Consensus 59 ~~~a~~~a~~~g~~--~Y~~~~g~~~Lreaia~~~~--~~~vv~t~ggt~A~~~~~~a 112 (460)
T PRK13238 59 MSDRQWAAMMRGDE--AYAGSRSYYRLEDAVKDIFG--YPYTIPTHQGRAAEQILFPV 112 (460)
T ss_pred hhHHHHHHHHhCCc--ccCCCCCHHHHHHHHHHHhC--CCcEEECCCHHHHHHHHHHH
Confidence 55555555543221 12 22345677788888774 45799999999999998764
No 268
>TIGR03799 NOD_PanD_pyr putative pyridoxal-dependent aspartate 1-decarboxylase. This enzyme is proposed here to be a form of aspartate 1-decarboxylase, pyridoxal-dependent, that represents a non-orthologous displacement to the more widely distributed pyruvoyl-dependent form (TIGR00223). Aspartate 1-decarboxylase makes beta-alanine, used usually in pathothenate biosynthesis, by decarboxylation from asparatate. A number of species with the PanB and PanC enzymes, however, lack PanD. This protein family occurs in a number of Proteobacteria that lack PanD. This enzyme family appears to be a pyridoxal-dependent enzyme (see pfam00282). The family was identified by Partial Phylogenetic Profiling; members in Geobacter sulfurreducens, G. metallireducens, and Pseudoalteromonas atlantica are clustered with the genes for PanB and PanC. We suggest the gene symbol panP (panthothenate biosynthesis enzyme, Pyridoxal-dependent).
Probab=81.52 E-value=4.7 Score=29.33 Aligned_cols=42 Identities=24% Similarity=0.124 Sum_probs=28.8
Q ss_pred chHHHHHHHHHHhhCCC-------------CCCeEEeeCChHHHHHHHHHHHHhh
Q psy6206 31 HDNLVLCARKLASLLPD-------------PLSVCFFVNSGSEANDLALRLARVH 72 (83)
Q Consensus 31 ~~~~~~la~~l~~~~p~-------------~~~~v~f~~sGseA~e~Alk~ar~~ 72 (83)
++....+.+.|.+++.. +..--.|+++||+||=.|+..||..
T Consensus 128 t~lE~~v~~wl~~l~~~~~~~~~~~~~~~~~~~~G~~tsGGS~ANl~Al~~AR~~ 182 (522)
T TIGR03799 128 TPLERQVLGMMHHLVYGQDDDFYRKWMHSADHSLGAFCSGGTVANITALWVARNR 182 (522)
T ss_pred HHHHHHHHHHHHHHhccCcccchhhcccCCCCCCeEEcCchHHHHHHHHHHHHHH
Confidence 34445566666666521 0123578999999999999999975
No 269
>PRK08114 cystathionine beta-lyase; Provisional
Probab=81.51 E-value=9.7 Score=26.75 Aligned_cols=40 Identities=15% Similarity=0.003 Sum_probs=31.5
Q ss_pred CCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHH
Q psy6206 26 NNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALR 67 (83)
Q Consensus 26 ~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk 67 (83)
++...+|....|.++|.++-+ ....++.+||..|+..++.
T Consensus 56 YsR~~nPt~~~le~~la~LEg--~~~a~~~~SGmaAi~~~~~ 95 (395)
T PRK08114 56 YGRRGTLTHFSLQEAMCELEG--GAGCALYPCGAAAVANAIL 95 (395)
T ss_pred ccCCCChhHHHHHHHHHHHhC--CCeEEEEhHHHHHHHHHHH
Confidence 455667788889999988653 3577888889999999886
No 270
>PRK04366 glycine dehydrogenase subunit 2; Validated
Probab=80.70 E-value=18 Score=25.86 Aligned_cols=64 Identities=9% Similarity=0.021 Sum_probs=36.3
Q ss_pred CCCHHHHHHHHHHHHhh-ccCC------CCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHh
Q psy6206 7 HCHPAVVKAACTQLALL-NTNN------RFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARV 71 (83)
Q Consensus 7 h~~p~i~~a~~~~~~~~-~~~~------~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~ 71 (83)
|-.|.|.+++.+..... .++. ....+...++.+.+++.++.+ +-.++.++|+.+.-.++.++|.
T Consensus 81 ~~~p~i~~~~~~~~~~~~~tpYq~e~~sqG~lel~~~~~~~la~l~G~~-~~~l~~~~GA~a~~~~l~~~r~ 151 (481)
T PRK04366 81 KYNPKINEKVARLPGFAELHPLQPEETVQGALELMYELQEWLKEITGMD-AVTLQPAAGAHGELTGLLMIRA 151 (481)
T ss_pred CCCHHHHHHHHhCcchhcCCCCCChhhhhHHHHHHHHHHHHHHHHhCCC-ceEEEeCcHHHHHHHHHHHHHH
Confidence 34577888887642111 1111 011234466777888887532 3355567888887776666654
No 271
>TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=80.68 E-value=11 Score=26.00 Aligned_cols=38 Identities=26% Similarity=0.155 Sum_probs=29.0
Q ss_pred CCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHH
Q psy6206 28 RFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALR 67 (83)
Q Consensus 28 ~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk 67 (83)
...++...+|.+.+.++... +.+.+.+||+.|+..++.
T Consensus 43 r~~~p~~~~le~~la~l~g~--~~~l~~~sG~~al~~~l~ 80 (378)
T TIGR01329 43 RSGNPTRTALESLLAKLDKA--DRAFAFSSGMAALDVITR 80 (378)
T ss_pred CCCChHHHHHHHHHHHHhCC--CcEEEECCHHHHHHHHHH
Confidence 34466678899999998754 567778999999887665
No 272
>PRK08776 cystathionine gamma-synthase; Provisional
Probab=80.14 E-value=12 Score=26.21 Aligned_cols=42 Identities=21% Similarity=0.098 Sum_probs=30.5
Q ss_pred CCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHH
Q psy6206 26 NNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLA 69 (83)
Q Consensus 26 ~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~a 69 (83)
++.+.++....|.++|.++.+. .....++||++|+..++...
T Consensus 54 y~R~~~p~~~~Le~~lA~l~g~--~~~v~~~sG~~Ai~~~l~al 95 (405)
T PRK08776 54 YTRSGNPTRDLLGEALAELEGG--AGGVITATGMGAINLVLNAL 95 (405)
T ss_pred ccCCCChHHHHHHHHHHHHhCC--CceEEEcCHHHHHHHHHHHH
Confidence 3455667778899999987754 34567788999998877643
No 273
>KOG2862|consensus
Probab=79.88 E-value=4.2 Score=28.26 Aligned_cols=21 Identities=24% Similarity=0.273 Sum_probs=16.2
Q ss_pred ccCCCCCCHHHHHHHHHHHHh
Q psy6206 2 SLPVGHCHPAVVKAACTQLAL 22 (83)
Q Consensus 2 ~~~lGh~~p~i~~a~~~~~~~ 22 (83)
..++||-+|++.+.+.+-++.
T Consensus 38 ~~~lgh~sPe~~qIm~~v~eg 58 (385)
T KOG2862|consen 38 RPSLGHMSPEFVQIMDEVLEG 58 (385)
T ss_pred CCccccCCHHHHHHHHHHHHH
Confidence 357899999998888776654
No 274
>PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A ....
Probab=79.49 E-value=16 Score=24.43 Aligned_cols=68 Identities=13% Similarity=0.004 Sum_probs=33.9
Q ss_pred cCCCCCCHHHHHHHHHHHH---hhccCCCCcch-HHHHHHHHHHhhCC------CCCC-eEEeeCChHHHHHHHHHHHH
Q psy6206 3 LPVGHCHPAVVKAACTQLA---LLNTNNRFLHD-NLVLCARKLASLLP------DPLS-VCFFVNSGSEANDLALRLAR 70 (83)
Q Consensus 3 ~~lGh~~p~i~~a~~~~~~---~~~~~~~~~~~-~~~~la~~l~~~~p------~~~~-~v~f~~sGseA~e~Alk~ar 70 (83)
...+++||.+.+++.+..+ .......++.. -..+|.+.+.+... .+.+ .++.+++..++...++.+.+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~i~~~~G~~~~~~~~~~~~~ 89 (363)
T PF00155_consen 11 PLLLSQNPPPPAAIKAAIRGAATSSSFLGYPPPQGYPELREAIADFLGRRYGVPVDPEANILVTSGAQAALFLLLRLLK 89 (363)
T ss_dssp TSSTTSSHHHHHHHHHHHHHHHHHTGCTSSTCTTHHHHHHHHHHHHHHHHHTHHTTGGEGEEEESHHHHHHHHHHHHHH
T ss_pred CCCcccccchHHHHHHHHHHhhcccccccCCCchhhHHHHHHHHHHhhhccCcccccceEEEEecccccchhhhhhccc
Confidence 3455567777666666554 22222233322 24455555555443 2344 56666555555555555443
No 275
>PRK08912 hypothetical protein; Provisional
Probab=78.94 E-value=18 Score=24.69 Aligned_cols=60 Identities=20% Similarity=-0.015 Sum_probs=34.8
Q ss_pred CHHHHHHHHHHHHhh-c-cCC-CCcchHHHHHHHHHHhhCC--CCCC-eEEeeCChHHHHHHHHHH
Q psy6206 9 HPAVVKAACTQLALL-N-TNN-RFLHDNLVLCARKLASLLP--DPLS-VCFFVNSGSEANDLALRL 68 (83)
Q Consensus 9 ~p~i~~a~~~~~~~~-~-~~~-~~~~~~~~~la~~l~~~~p--~~~~-~v~f~~sGseA~e~Alk~ 68 (83)
+|.+.+++.+.+... . +.. ....+....+++.+.+..+ ...+ .+.+++++++++..++..
T Consensus 41 p~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~~i~~t~G~~~al~~~~~~ 106 (387)
T PRK08912 41 PEDVRRAAADALLDGSNQYPPMMGLPELRQAVAAHYARFQGLDLDPETEVMVTSGATEALAAALLA 106 (387)
T ss_pred CHHHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCcccEEEeCCcHHHHHHHHHH
Confidence 467777777765432 1 111 1112334555555544322 2344 899999999999888774
No 276
>cd00617 Tnase_like Tryptophanase family (Tnase). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to tryptophanase (Tnase) and tyrosine phenol-lyase (TPL). Tnase and TPL are active as tetramers and catalyze beta-elimination reactions. Tnase catalyzes degradation of L-tryptophan to yield indole, pyruvate and ammonia and TPL catalyzes degradation of L-tyrosine to yield phenol, pyruvate and ammonia.
Probab=78.67 E-value=13 Score=26.38 Aligned_cols=35 Identities=9% Similarity=0.152 Sum_probs=28.4
Q ss_pred HHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHH
Q psy6206 33 NLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLA 69 (83)
Q Consensus 33 ~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~a 69 (83)
-..+|.+.+.+.+ +.+.+.++++|++|+..++...
T Consensus 54 g~~~Leeaia~~~--g~~~vv~t~~Gt~Al~la~~al 88 (431)
T cd00617 54 SFYDLEDAVQDLF--GFKHIIPTHQGRGAENILFSIL 88 (431)
T ss_pred CHHHHHHHHHHHH--CCCeEEEcCCHHHHHHHHHHHh
Confidence 3567888888888 4568999999999999988743
No 277
>TIGR01140 L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxylase. This family contains pyridoxal phosphate-binding class II aminotransferases (see PFAM:PF00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella.
Probab=78.43 E-value=7.8 Score=25.94 Aligned_cols=40 Identities=23% Similarity=0.118 Sum_probs=28.0
Q ss_pred CcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHH
Q psy6206 29 FLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRL 68 (83)
Q Consensus 29 ~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ 68 (83)
++++...++.+.+++..+.+.+.+.+++++++++..+.++
T Consensus 44 y~~~~~~~lr~~la~~~~~~~~~i~~t~G~~~~i~~~~~~ 83 (330)
T TIGR01140 44 YPDPEYDELRAAAAAYYGLPAASVLPVNGAQEAIYLLPRL 83 (330)
T ss_pred CCCccHHHHHHHHHHHhCCChhhEEECCCHHHHHHHHHHH
Confidence 3333346777777777755457899999999998886544
No 278
>TIGR03538 DapC_gpp succinyldiaminopimelate transaminase. This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).
Probab=78.00 E-value=19 Score=24.60 Aligned_cols=61 Identities=20% Similarity=-0.027 Sum_probs=36.8
Q ss_pred CHHHHHHHHHHHHhhc-cCCCC-cchHHHHHHHHHHhhCC----CCC-CeEEeeCChHHHHHHHHHHH
Q psy6206 9 HPAVVKAACTQLALLN-TNNRF-LHDNLVLCARKLASLLP----DPL-SVCFFVNSGSEANDLALRLA 69 (83)
Q Consensus 9 ~p~i~~a~~~~~~~~~-~~~~~-~~~~~~~la~~l~~~~p----~~~-~~v~f~~sGseA~e~Alk~a 69 (83)
.|.+.+++.+.+.... +.... ..+....+++.+.+... -+. +.+..++++++++..+++..
T Consensus 43 ~~~~~~a~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~~~i~it~Ga~~al~~~~~~l 110 (393)
T TIGR03538 43 PAFVLEALRENLHGLSTYPTTKGLPELRQAIARWLERRFDLPTGVDPERHVLPVNGTREALFAFAQAV 110 (393)
T ss_pred CHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHHhhCCcccCCCCceEEECCCcHHHHHHHHHHH
Confidence 4667888877665431 11111 22334556666655421 123 36899999999999988854
No 279
>PRK04635 histidinol-phosphate aminotransferase; Provisional
Probab=76.38 E-value=4.7 Score=27.20 Aligned_cols=36 Identities=11% Similarity=-0.034 Sum_probs=28.1
Q ss_pred HHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHH
Q psy6206 34 LVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLA 69 (83)
Q Consensus 34 ~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~a 69 (83)
..+|.+.+.+..+.+.+.|.++++++|++..+++..
T Consensus 62 ~~~Lr~aia~~~~~~~~~I~it~Gs~~~i~~~~~~~ 97 (354)
T PRK04635 62 PPELINAYSAYAGVAPEQILTSRGADEAIELLIRAF 97 (354)
T ss_pred HHHHHHHHHHHhCcCHHHEEEeCCHHHHHHHHHHHh
Confidence 456777777776656679999999999999888743
No 280
>PRK07049 methionine gamma-lyase; Validated
Probab=76.20 E-value=6.7 Score=27.64 Aligned_cols=41 Identities=24% Similarity=0.216 Sum_probs=32.2
Q ss_pred CCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHH
Q psy6206 26 NNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRL 68 (83)
Q Consensus 26 ~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ 68 (83)
.+.++++....|.+.|.++... +.++.++||++|+..++..
T Consensus 77 y~R~~~Pt~~~Le~~lA~leg~--~~~iv~~sG~~Ai~~~l~a 117 (427)
T PRK07049 77 YSRFNHPNSEIVEDRLAVYEGA--ESAALFSSGMSAIATTLLA 117 (427)
T ss_pred ccCCCCcCHHHHHHHHHHHhCC--CcEEEEccHHHHHHHHHHH
Confidence 3556777778899999988743 4688899999999888864
No 281
>PRK08068 transaminase; Reviewed
Probab=75.98 E-value=16 Score=24.94 Aligned_cols=60 Identities=7% Similarity=-0.160 Sum_probs=35.2
Q ss_pred CCHHHHHHHHHHHHhhccCCCC-----cchHHHHHHHHHHhhCC--CCCC-eEEeeCChHHHHHHHHHH
Q psy6206 8 CHPAVVKAACTQLALLNTNNRF-----LHDNLVLCARKLASLLP--DPLS-VCFFVNSGSEANDLALRL 68 (83)
Q Consensus 8 ~~p~i~~a~~~~~~~~~~~~~~-----~~~~~~~la~~l~~~~p--~~~~-~v~f~~sGseA~e~Alk~ 68 (83)
..|.+.+++.+.++.... ..| ..+....+++.+.+..+ ...+ .++.+++|++++..++..
T Consensus 46 ~~~~~~~~~~~~~~~~~~-~~Y~~~~g~~~lr~aia~~~~~~~g~~~~~~~~i~it~G~~~~l~~~~~~ 113 (389)
T PRK08068 46 TPEHIVEALQEAAENPAN-HKYSPFRGYPFLKEAAADFYKREYGVTLDPETEVAILFGGKAGLVELPQC 113 (389)
T ss_pred CCHHHHHHHHHHHhCCCC-CCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccEEEcCCcHHHHHHHHHH
Confidence 357788888887764211 122 12334555555543322 2344 688899999998886653
No 282
>PRK08064 cystathionine beta-lyase; Provisional
Probab=75.67 E-value=19 Score=25.01 Aligned_cols=39 Identities=21% Similarity=0.042 Sum_probs=29.2
Q ss_pred CCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHH
Q psy6206 27 NRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALR 67 (83)
Q Consensus 27 ~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk 67 (83)
+...++...+|.++|.+..+.+ .....+||+.|+..++.
T Consensus 49 ~r~~~p~~~~le~~lA~l~g~~--~~v~~~sG~~ai~~~l~ 87 (390)
T PRK08064 49 SRSGNPTREALEDIIAELEGGT--KGFAFASGMAAISTAFL 87 (390)
T ss_pred cCCCChhHHHHHHHHHHHhCCC--CeEEECCHHHHHHHHHH
Confidence 3444667788999999988643 34556999999998885
No 283
>PRK12566 glycine dehydrogenase; Provisional
Probab=75.43 E-value=13 Score=29.35 Aligned_cols=46 Identities=15% Similarity=0.109 Sum_probs=32.3
Q ss_pred HHHHHHHHHHhhCCCCCCeEEee-CChHHHHHHHHHHHHhh------cCCCceEE
Q psy6206 33 NLVLCARKLASLLPDPLSVCFFV-NSGSEANDLALRLARVH------TNNDDVIT 80 (83)
Q Consensus 33 ~~~~la~~l~~~~p~~~~~v~f~-~sGseA~e~Alk~ar~~------~~r~~ii~ 80 (83)
...+|.+.|++++ +++.+-+. +||+.+.-+++...|.| ++|++||.
T Consensus 544 ~i~elq~~l~eLt--Gmd~~Sl~p~sGA~gE~A~Lmair~yh~~~Ge~~r~~vLI 596 (954)
T PRK12566 544 MIDELEAWLCAIT--GFDAICMQPNSGAQGEYAGLLAIRRYHRSRGQSQRDICLI 596 (954)
T ss_pred HHHHHHHHHHHHH--CCCeEeecCCchHHHHHHHHHHHHHHHHhcCCCCCCEEEe
Confidence 3456778888888 56655444 58998887888888876 35666553
No 284
>PRK07590 L,L-diaminopimelate aminotransferase; Validated
Probab=75.30 E-value=21 Score=24.63 Aligned_cols=58 Identities=14% Similarity=0.003 Sum_probs=33.0
Q ss_pred CHHHHHHHHHHHHhhc---cCCCC-c----chHHHHHHHHHHhhC--CCCCCeEEeeCChHHHHHHHH
Q psy6206 9 HPAVVKAACTQLALLN---TNNRF-L----HDNLVLCARKLASLL--PDPLSVCFFVNSGSEANDLAL 66 (83)
Q Consensus 9 ~p~i~~a~~~~~~~~~---~~~~~-~----~~~~~~la~~l~~~~--p~~~~~v~f~~sGseA~e~Al 66 (83)
+|.+.+++.+.++... ....| + .+....+++.+.+.. +-+.+.|+.++++.+++...+
T Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~I~it~Ga~~al~~l~ 116 (409)
T PRK07590 49 PPAVIEAMHKAVDEMGTAETFRGYGPEQGYDFLREKIAENDYQARGCDISADEIFISDGAKCDTGNIL 116 (409)
T ss_pred CHHHHHHHHHHHhcccccCCccCCCCCCCCHHHHHHHHHHHHHhcCCcCChhhEEECCCHHHHHHHHH
Confidence 3667888888776531 11122 1 123344555443221 334568999999999998744
No 285
>PRK06836 aspartate aminotransferase; Provisional
Probab=75.17 E-value=24 Score=24.23 Aligned_cols=35 Identities=17% Similarity=0.131 Sum_probs=23.6
Q ss_pred HHHHHHHHhhC--CCCCCeEEeeCChHHHHHHHHHHH
Q psy6206 35 VLCARKLASLL--PDPLSVCFFVNSGSEANDLALRLA 69 (83)
Q Consensus 35 ~~la~~l~~~~--p~~~~~v~f~~sGseA~e~Alk~a 69 (83)
..+++.+.... +.+.+.+.+++++++++..++...
T Consensus 80 ~~ia~~l~~~~~~~~~~~~i~~t~G~~~al~~~~~~l 116 (394)
T PRK06836 80 EAIAESLNRRFGTPLTADHIVMTCGAAGALNVALKAI 116 (394)
T ss_pred HHHHHHHHHHhCCCCCcCcEEEeCChHHHHHHHHHHh
Confidence 44555554332 223468999999999999888743
No 286
>PRK04781 histidinol-phosphate aminotransferase; Provisional
Probab=75.12 E-value=5.7 Score=27.04 Aligned_cols=36 Identities=22% Similarity=0.065 Sum_probs=27.3
Q ss_pred HHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHH
Q psy6206 34 LVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLA 69 (83)
Q Consensus 34 ~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~a 69 (83)
..+|.+.|.+....+.+.|.++++++|++..++...
T Consensus 61 ~~~lr~~ia~~~~~~~~~I~~t~G~~~~l~~~~~~~ 96 (364)
T PRK04781 61 PPGLRSALAALYGCAPEQLLIGRGSDEAIDLLVRAL 96 (364)
T ss_pred HHHHHHHHHHHhCcChHHEEEeCCHHHHHHHHHHHh
Confidence 456777777776555668999999999999888643
No 287
>PRK05839 hypothetical protein; Provisional
Probab=74.51 E-value=24 Score=24.04 Aligned_cols=60 Identities=8% Similarity=-0.227 Sum_probs=34.8
Q ss_pred CHHHHHHHHHHHHhhc-cCCC-CcchHHHHHHHHHHhhCC--CCCCeEEeeCChHHHHHHHHHH
Q psy6206 9 HPAVVKAACTQLALLN-TNNR-FLHDNLVLCARKLASLLP--DPLSVCFFVNSGSEANDLALRL 68 (83)
Q Consensus 9 ~p~i~~a~~~~~~~~~-~~~~-~~~~~~~~la~~l~~~~p--~~~~~v~f~~sGseA~e~Alk~ 68 (83)
.|.+.+++.+...... .... ...+....+++.+.+..+ -..+.|+.+++++++....+.+
T Consensus 39 ~~~~~~a~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~g~~~~~~~I~it~G~~~al~~~~~~ 102 (374)
T PRK05839 39 PKFIQDALKNNAHLLNKYPKSAGEESLREAQRGFFKRRFKIELKENELIPTFGTREVLFNFPQF 102 (374)
T ss_pred CHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCcceEEEecCcHHHHHHHHHH
Confidence 3567777766543321 1111 112334556666655432 3456899999999998877664
No 288
>PRK05967 cystathionine beta-lyase; Provisional
Probab=73.84 E-value=25 Score=24.73 Aligned_cols=51 Identities=10% Similarity=0.017 Sum_probs=32.2
Q ss_pred CCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhhcCCCceEE
Q psy6206 26 NNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVHTNNDDVIT 80 (83)
Q Consensus 26 ~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~~~r~~ii~ 80 (83)
++...++....|.+.|..+-.+ ....+++||++|+..++... .-.|. +||.
T Consensus 58 YsR~gnPt~~~Le~~la~le~~--~~~v~~sSG~aAi~~~l~al-l~~GD-~Vlv 108 (395)
T PRK05967 58 YGTRGTPTTDALCKAIDALEGS--AGTILVPSGLAAVTVPFLGF-LSPGD-HALI 108 (395)
T ss_pred cCCCCChHHHHHHHHHHHHhCC--CCEEEECcHHHHHHHHHHHh-cCCCC-EEEE
Confidence 3455567778888888876432 23456677999999888432 22344 4554
No 289
>PRK11524 putative methyltransferase; Provisional
Probab=73.81 E-value=8.2 Score=25.61 Aligned_cols=39 Identities=10% Similarity=-0.003 Sum_probs=25.9
Q ss_pred CcchHHHHHHHHHHhhCCCCCCeE--EeeCChHHHHHHHHHH
Q psy6206 29 FLHDNLVLCARKLASLLPDPLSVC--FFVNSGSEANDLALRL 68 (83)
Q Consensus 29 ~~~~~~~~la~~l~~~~p~~~~~v--~f~~sGseA~e~Alk~ 68 (83)
.+++-.++|.++|.+.+-.+-+-| .|+-|||.++- |.++
T Consensus 189 HPt~kP~~L~erlI~~~S~~GD~VLDPF~GSGTT~~A-A~~l 229 (284)
T PRK11524 189 HPTQKPEALLKRIILASSNPGDIVLDPFAGSFTTGAV-AKAS 229 (284)
T ss_pred CcccChHHHHHHHHHHhCCCCCEEEECCCCCcHHHHH-HHHc
Confidence 344555889999887753333444 78999998874 4444
No 290
>PRK07865 N-succinyldiaminopimelate aminotransferase; Reviewed
Probab=73.69 E-value=25 Score=23.76 Aligned_cols=61 Identities=11% Similarity=-0.119 Sum_probs=35.5
Q ss_pred CHHHHHHHHHHHHhhccC-CCCcchHHHHHHHHHHhhCC---CCCCeEEeeCChHHHHHHHHHHH
Q psy6206 9 HPAVVKAACTQLALLNTN-NRFLHDNLVLCARKLASLLP---DPLSVCFFVNSGSEANDLALRLA 69 (83)
Q Consensus 9 ~p~i~~a~~~~~~~~~~~-~~~~~~~~~~la~~l~~~~p---~~~~~v~f~~sGseA~e~Alk~a 69 (83)
.|.+.+++.+......+. .....+....+++.+.+..+ ...+.|+.++++++++..++.+.
T Consensus 42 ~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~~I~it~G~~~~i~~~~~~l 106 (364)
T PRK07865 42 PPVIQEALAAAADAPGYPTTAGTPELREAIVGWLARRRGVTGLDPAAVLPVIGSKELVAWLPTLL 106 (364)
T ss_pred CHHHHHHHHHHHhhCCCCCccCCHHHHHHHHHHHHHHcCCCCCCcccEEEccChHHHHHHHHHHH
Confidence 456677776544322111 11112344567777655422 33568999999999998866543
No 291
>PRK07550 hypothetical protein; Provisional
Probab=73.50 E-value=13 Score=25.35 Aligned_cols=60 Identities=13% Similarity=-0.023 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHhhcc--CCC--CcchHHHHHHHHHHhhCC--CCCCeEEeeCChHHHHHHHHHHH
Q psy6206 10 PAVVKAACTQLALLNT--NNR--FLHDNLVLCARKLASLLP--DPLSVCFFVNSGSEANDLALRLA 69 (83)
Q Consensus 10 p~i~~a~~~~~~~~~~--~~~--~~~~~~~~la~~l~~~~p--~~~~~v~f~~sGseA~e~Alk~a 69 (83)
+.+.+++.+.+..... +.. ...+....+++.+.+..+ ...+.+++++++++|+..+++..
T Consensus 45 ~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l 110 (386)
T PRK07550 45 PELLRALAEAAADPAAHLYGPVEGLPELREAYAAHYSRLYGAAISPEQVHITSGCNQAFWAAMVTL 110 (386)
T ss_pred HHHHHHHHHHHhCcCCcCCCCCCCCHHHHHHHHHHHHHHhCCCCCcceEEEecCcHHHHHHHHHHh
Confidence 4566666665532111 111 122334566666665422 23468999999999999888764
No 292
>TIGR03539 DapC_actino succinyldiaminopimelate transaminase. This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).
Probab=72.99 E-value=26 Score=23.67 Aligned_cols=60 Identities=10% Similarity=-0.097 Sum_probs=35.7
Q ss_pred CHHHHHHHHHHHHhhccCCCC-cchHHHHHHHHHHhhCC---CCCCeEEeeCChHHHHHHHHHH
Q psy6206 9 HPAVVKAACTQLALLNTNNRF-LHDNLVLCARKLASLLP---DPLSVCFFVNSGSEANDLALRL 68 (83)
Q Consensus 9 ~p~i~~a~~~~~~~~~~~~~~-~~~~~~~la~~l~~~~p---~~~~~v~f~~sGseA~e~Alk~ 68 (83)
.|.+.+++.+......+.... ..+....+++.+.+..+ -..+.+..++++++++..++.+
T Consensus 36 ~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~~~~I~it~G~~~~i~~~~~~ 99 (357)
T TIGR03539 36 PPLIRAALAAAADAPGYPQTWGTPELREAIVDWLERRRGVPGLDPTAVLPVIGTKELVAWLPTL 99 (357)
T ss_pred CHHHHHHHHHHHhhCCCCcccCCHHHHHHHHHHHHHhcCCCCCCcCeEEEccChHHHHHHHHHH
Confidence 466777776654432221111 22344566666655422 2356899999999998887664
No 293
>PRK07671 cystathionine beta-lyase; Provisional
Probab=72.78 E-value=13 Score=25.61 Aligned_cols=40 Identities=18% Similarity=0.053 Sum_probs=29.8
Q ss_pred CCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHH
Q psy6206 26 NNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALR 67 (83)
Q Consensus 26 ~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk 67 (83)
++.+.++...+|.++|.++.+. +...+.+||+.|+..++.
T Consensus 44 y~r~~~p~~~~Le~~lA~l~g~--~~~~~~~sG~aai~~~~~ 83 (377)
T PRK07671 44 YSRTGNPTRAALEELIAVLEGG--HAGFAFGSGMAAITAVMM 83 (377)
T ss_pred cCCCCChHHHHHHHHHHHHhCC--CceEEeCCHHHHHHHHHH
Confidence 3455677788999999998754 356778899998887654
No 294
>PRK07366 succinyldiaminopimelate transaminase; Validated
Probab=72.31 E-value=21 Score=24.39 Aligned_cols=59 Identities=10% Similarity=-0.066 Sum_probs=34.9
Q ss_pred CHHHHHHHHHHHHhhccCCCC-----cchHHHHHHHHHHhhCC--CCCC-eEEeeCChHHHHHHHHHH
Q psy6206 9 HPAVVKAACTQLALLNTNNRF-----LHDNLVLCARKLASLLP--DPLS-VCFFVNSGSEANDLALRL 68 (83)
Q Consensus 9 ~p~i~~a~~~~~~~~~~~~~~-----~~~~~~~la~~l~~~~p--~~~~-~v~f~~sGseA~e~Alk~ 68 (83)
.|.+.+++.+.+..... ..| ..+....+++.+.+..+ -+.+ .|..++++.+++..++..
T Consensus 45 ~~~~~~~~~~~~~~~~~-~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~I~it~Gs~~al~~~~~~ 111 (388)
T PRK07366 45 PAHALEAIAQSLHDPST-HGYLLFHGTLDFREAAAQWYEQRFGLAVDPETEVLPLIGSQEGTAHLPLA 111 (388)
T ss_pred CHHHHHHHHHHHhCccc-CCCCCCCCCHHHHHHHHHHHHHhhCCcCCCcCeEEECCCcHHHHHHHHHH
Confidence 46788888776643211 112 12334556665544322 2344 588899999999988774
No 295
>PRK05367 glycine dehydrogenase; Provisional
Probab=71.78 E-value=23 Score=27.89 Aligned_cols=38 Identities=16% Similarity=0.082 Sum_probs=26.8
Q ss_pred HHHHHHHHHHhhCCCCCCeEEee-CChHHHHHHHHHHHHhh
Q psy6206 33 NLVLCARKLASLLPDPLSVCFFV-NSGSEANDLALRLARVH 72 (83)
Q Consensus 33 ~~~~la~~l~~~~p~~~~~v~f~-~sGseA~e~Alk~ar~~ 72 (83)
...++.+.|+++++ ++.+.|. ++|+.++.+++..+|.|
T Consensus 543 ~i~e~q~~l~eltG--~d~~sl~~~~ga~ge~agL~a~r~~ 581 (954)
T PRK05367 543 LIDQLEAWLAEITG--YDAVSLQPNAGAQGEYAGLLAIRAY 581 (954)
T ss_pred HHHHHHHHHHHHHC--CCCEEECccHHHHHHHHHHHHHHHH
Confidence 34667788888884 4456554 57778887888777765
No 296
>TIGR00273 iron-sulfur cluster-binding protein. Members of this family have a perfect 4Fe-4S binding motif C-x(2)-C-x(2)-C-x(3)-CP followed by either a perfect or imperfect (the first Cys replaced by Ser) second copy. Members probably bind two 4fe-4S iron-sulfur clusters.
Probab=71.51 E-value=13 Score=26.51 Aligned_cols=40 Identities=10% Similarity=0.208 Sum_probs=28.2
Q ss_pred HHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhhcCC
Q psy6206 36 LCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVHTNN 75 (83)
Q Consensus 36 ~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~~~r 75 (83)
++.+.+.+.+-..-..|+++.++.||.+..+++.+...++
T Consensus 51 ~~l~~~~~~~~~~g~~v~~a~t~~eA~~~v~~i~~~~~~~ 90 (432)
T TIGR00273 51 FYLDQLKENVTQRGGHVYYAKTAEEARKIIGKVAQEKNGK 90 (432)
T ss_pred HHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHhCCC
Confidence 3334443333222348999999999999999999987655
No 297
>PLN02414 glycine dehydrogenase (decarboxylating)
Probab=70.90 E-value=39 Score=26.91 Aligned_cols=70 Identities=10% Similarity=0.186 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHhhccCCCCc-------chHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhhc--CCCceEE
Q psy6206 10 PAVVKAACTQLALLNTNNRFL-------HDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVHT--NNDDVIT 80 (83)
Q Consensus 10 p~i~~a~~~~~~~~~~~~~~~-------~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~~--~r~~ii~ 80 (83)
+.|.+++.+..+-......|- -+...++...++++++-+...+-|..++|++.|+++. +..++ ++++|+.
T Consensus 119 ~~v~~~i~~~~~~~TaytPYqaEisQG~lqal~~~Qt~ia~LtG~~~anaSL~d~aTAaaea~~~-a~~~~~g~~~~VlV 197 (993)
T PLN02414 119 PVILRNILENPGWYTQYTPYQAEIAQGRLESLLNYQTMITDLTGLPMSNASLLDEGTAAAEAMAM-CNNILKGKKKKFLI 197 (993)
T ss_pred HHHHHHHHhChHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHhCCChhhEeecCChHHHHHHHHH-HHhcccCCCCEEEE
Confidence 445477776554331111111 1234567777888887666789999999999996664 44443 3355665
No 298
>PRK09147 succinyldiaminopimelate transaminase; Provisional
Probab=70.35 E-value=32 Score=23.57 Aligned_cols=61 Identities=16% Similarity=-0.097 Sum_probs=35.5
Q ss_pred CHHHHHHHHHHHHhhc-cCCC-CcchHHHHHHHHHHhhCC---CCC-CeEEeeCChHHHHHHHHHHH
Q psy6206 9 HPAVVKAACTQLALLN-TNNR-FLHDNLVLCARKLASLLP---DPL-SVCFFVNSGSEANDLALRLA 69 (83)
Q Consensus 9 ~p~i~~a~~~~~~~~~-~~~~-~~~~~~~~la~~l~~~~p---~~~-~~v~f~~sGseA~e~Alk~a 69 (83)
.|.+.+++.+.+..+. +... ...+....+++.+.+..+ -.. +.|..++++++++..+++..
T Consensus 44 ~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l 110 (396)
T PRK09147 44 PAFIKDALAANLDGLASYPTTAGLPALREAIAAWLERRYGLPALDPATQVLPVNGSREALFAFAQTV 110 (396)
T ss_pred CHHHHHHHHHHhhhhcCCCCCCCCHHHHHHHHHHHHHHhCCCcCCccceEEECCChHHHHHHHHHHH
Confidence 4567777776654431 1111 112334556666644322 223 37999999999999888743
No 299
>TIGR03542 DAPAT_plant LL-diaminopimelate aminotransferase. This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). This clade includes characterized species in plants and Chlamydia. Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh).
Probab=69.93 E-value=14 Score=25.49 Aligned_cols=57 Identities=11% Similarity=-0.027 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHhhc---cCCCC-cchHHHHHHHHHHhhC---CCCCCeEEeeCChHHHHHHHH
Q psy6206 10 PAVVKAACTQLALLN---TNNRF-LHDNLVLCARKLASLL---PDPLSVCFFVNSGSEANDLAL 66 (83)
Q Consensus 10 p~i~~a~~~~~~~~~---~~~~~-~~~~~~~la~~l~~~~---p~~~~~v~f~~sGseA~e~Al 66 (83)
|.+.+++.+.+.... ....+ +..-..+|.+.+++.. .-..+.|++++++++++....
T Consensus 49 ~~v~~~~~~~~~~~~~~~~~~~Y~p~~g~~~lr~aia~~~~~~~~~~d~I~it~Ga~~al~~l~ 112 (402)
T TIGR03542 49 ASVIEAFHNAVDELASEETFRGYGPEQGYPFLREAIAENDYRGRIDPEEIFISDGAKCDVFRLQ 112 (402)
T ss_pred HHHHHHHHHHHhcccccccccCCCCCCCCHHHHHHHHHHHHhcCCCHHHEEECCCcHHHHHHHH
Confidence 667888877776531 11122 2111223444444321 123468999999999998743
No 300
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=69.44 E-value=26 Score=22.22 Aligned_cols=43 Identities=14% Similarity=0.059 Sum_probs=24.3
Q ss_pred HHHHHHhhCCCCCCeEEeeCCh-HHHHHHHHHHHHhhcCCCceEEe
Q psy6206 37 CARKLASLLPDPLSVCFFVNSG-SEANDLALRLARVHTNNDDVITQ 81 (83)
Q Consensus 37 la~~l~~~~p~~~~~v~f~~sG-seA~e~Alk~ar~~~~r~~ii~~ 81 (83)
+++.+......+.--+.+..|| ++.+-.++++|+...-+ +|++
T Consensus 99 f~~ql~~~~~~gDvli~iS~SG~s~~v~~a~~~Ak~~G~~--vI~I 142 (196)
T PRK10886 99 YAKQVRALGHAGDVLLAISTRGNSRDIVKAVEAAVTRDMT--IVAL 142 (196)
T ss_pred HHHHHHHcCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCE--EEEE
Confidence 3444444343333345566665 67788888888876433 4444
No 301
>PLN00175 aminotransferase family protein; Provisional
Probab=69.27 E-value=36 Score=23.71 Aligned_cols=60 Identities=12% Similarity=-0.131 Sum_probs=35.4
Q ss_pred CHHHHHHHHHHHHhh-c-cCCC-CcchHHHHHHHHHHhhCC--CCCC-eEEeeCChHHHHHHHHHH
Q psy6206 9 HPAVVKAACTQLALL-N-TNNR-FLHDNLVLCARKLASLLP--DPLS-VCFFVNSGSEANDLALRL 68 (83)
Q Consensus 9 ~p~i~~a~~~~~~~~-~-~~~~-~~~~~~~~la~~l~~~~p--~~~~-~v~f~~sGseA~e~Alk~ 68 (83)
.|.+.+++.+.++.. . +... ...+....+++.+.+..+ .+.+ .|.+++++++|+..++..
T Consensus 69 ~~~~~~~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~~I~vt~G~~~al~~~~~~ 134 (413)
T PLN00175 69 PDFVKEAAIQAIRDGKNQYARGFGVPELNSAIAERFKKDTGLVVDPEKEVTVTSGCTEAIAATILG 134 (413)
T ss_pred CHHHHHHHHHHHhcCCCCcCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCEEEeCCHHHHHHHHHHH
Confidence 456777887777642 1 1111 112334556666654432 2233 689999999999988873
No 302
>PRK06460 hypothetical protein; Provisional
Probab=68.37 E-value=28 Score=24.04 Aligned_cols=40 Identities=15% Similarity=0.083 Sum_probs=28.4
Q ss_pred CCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHH
Q psy6206 27 NRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRL 68 (83)
Q Consensus 27 ~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ 68 (83)
+...++...+|.++|.+....+ .....+||++|+..++..
T Consensus 40 ~r~~~p~~~~L~~~lA~l~g~~--~~v~~~sG~~ai~~~l~a 79 (376)
T PRK06460 40 SREANPTVLELTKKIVELENAE--MGVAFSSGMGAISTTALA 79 (376)
T ss_pred eCCCCccHHHHHHHHHHHhCCC--cEEEeCCHHHHHHHHHHH
Confidence 3445667788999999988543 233448899999888763
No 303
>PRK07309 aromatic amino acid aminotransferase; Validated
Probab=67.91 E-value=36 Score=23.31 Aligned_cols=61 Identities=15% Similarity=-0.034 Sum_probs=34.1
Q ss_pred CHHHHHHHHHHHHhh-c-cC-CCCcchHHHHHHHHHHhhCC--C-CCCeEEeeCChHHHHHHHHHHH
Q psy6206 9 HPAVVKAACTQLALL-N-TN-NRFLHDNLVLCARKLASLLP--D-PLSVCFFVNSGSEANDLALRLA 69 (83)
Q Consensus 9 ~p~i~~a~~~~~~~~-~-~~-~~~~~~~~~~la~~l~~~~p--~-~~~~v~f~~sGseA~e~Alk~a 69 (83)
.|.+.+++.+.+... . +. .....+....+++.+....+ . ..+.|+++++|++|++.++...
T Consensus 45 ~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~~ 111 (391)
T PRK07309 45 PDHVKEAAKRAIDANQSHYTGMAGLLELRQAAADFVKEKYNLDYAPENEILVTIGATEALSASLTAI 111 (391)
T ss_pred CHHHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEeCChHHHHHHHHHHh
Confidence 355677777666432 1 11 11112233445555543221 1 1358999999999999988754
No 304
>PRK07337 aminotransferase; Validated
Probab=67.45 E-value=37 Score=23.17 Aligned_cols=60 Identities=20% Similarity=-0.072 Sum_probs=34.8
Q ss_pred CHHHHHHHHHHHHhh-c-cCCC-CcchHHHHHHHHHHhhCC--CCCCeEEeeCChHHHHHHHHHH
Q psy6206 9 HPAVVKAACTQLALL-N-TNNR-FLHDNLVLCARKLASLLP--DPLSVCFFVNSGSEANDLALRL 68 (83)
Q Consensus 9 ~p~i~~a~~~~~~~~-~-~~~~-~~~~~~~~la~~l~~~~p--~~~~~v~f~~sGseA~e~Alk~ 68 (83)
.|.+.+++.+.+... . +... ...+....+++.+....+ -..+.+.+++++++|...++..
T Consensus 45 ~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~ 109 (388)
T PRK07337 45 PEPVVEAAARALRRGVTQYTSALGLAPLREAIAAWYARRFGLDVAPERIVVTAGASAALLLACLA 109 (388)
T ss_pred CHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCChHhEEEecCcHHHHHHHHHH
Confidence 456788887766532 1 1111 112333455555543322 2345899999999999887764
No 305
>TIGR03537 DapC succinyldiaminopimelate transaminase. Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade.
Probab=67.20 E-value=35 Score=22.91 Aligned_cols=60 Identities=8% Similarity=-0.115 Sum_probs=34.9
Q ss_pred CHHHHHHHHHHHHhhccCCC-C-cchHHHHHHHHHHhhC--CCCCC-eEEeeCChHHHHHHHHHH
Q psy6206 9 HPAVVKAACTQLALLNTNNR-F-LHDNLVLCARKLASLL--PDPLS-VCFFVNSGSEANDLALRL 68 (83)
Q Consensus 9 ~p~i~~a~~~~~~~~~~~~~-~-~~~~~~~la~~l~~~~--p~~~~-~v~f~~sGseA~e~Alk~ 68 (83)
.|++.+++.+....+..+.. . ..+....+++.+.... +.+.+ .|.+++++++|+..++..
T Consensus 15 ~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~Iiit~Gs~~ai~~~~~~ 79 (350)
T TIGR03537 15 PPFIRKALIDAVPEVSQYPSALGTKALREAISGWFERRFGVKLDPDAQVLPSAGSKEAIFHFPLV 79 (350)
T ss_pred CHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEcCChHHHHHHHHHH
Confidence 46678888776544321111 1 1233345555554432 23344 899999999999887663
No 306
>PRK06855 aminotransferase; Validated
Probab=67.10 E-value=20 Score=25.12 Aligned_cols=58 Identities=7% Similarity=-0.168 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHhhc---cC-CCCcchHHHHHHHHHHhhC--CCCCCeEEeeCChHHHHHHHHH
Q psy6206 10 PAVVKAACTQLALLN---TN-NRFLHDNLVLCARKLASLL--PDPLSVCFFVNSGSEANDLALR 67 (83)
Q Consensus 10 p~i~~a~~~~~~~~~---~~-~~~~~~~~~~la~~l~~~~--p~~~~~v~f~~sGseA~e~Alk 67 (83)
+.+.+++.+.+.... +. .....+....+++.+.+.. +-+.+.|+.++++++++..++.
T Consensus 51 ~~~~~a~~~~~~~~~~~~Y~~~~G~~~LReaia~~~~~~~g~~~~~~~I~it~G~~~al~~~~~ 114 (433)
T PRK06855 51 DWMKEIVAELVMDDKSYGYCPTKGVLETREFLAELNNKRGGAQITPDDIIFFNGLGDAIAKIYG 114 (433)
T ss_pred HHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHhccCCCCCHhHEEEcCcHHHHHHHHHH
Confidence 456667776654321 11 1112234455666665432 2234689999999999988874
No 307
>COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=67.00 E-value=16 Score=25.58 Aligned_cols=60 Identities=15% Similarity=-0.047 Sum_probs=37.2
Q ss_pred CHHHHHHHHHHHHhhc--c-CCCCcchHHHHHHHHHHhhCC--CCC-CeEEeeCChHHHHHHHHHH
Q psy6206 9 HPAVVKAACTQLALLN--T-NNRFLHDNLVLCARKLASLLP--DPL-SVCFFVNSGSEANDLALRL 68 (83)
Q Consensus 9 ~p~i~~a~~~~~~~~~--~-~~~~~~~~~~~la~~l~~~~p--~~~-~~v~f~~sGseA~e~Alk~ 68 (83)
++.+.+++.+.+.... . ......+....+++.+....+ -.. +.|+-+++++||+-.++..
T Consensus 43 p~~i~~a~~~a~~~~~~~Y~~~~G~~~LReaia~~~~~~~~~~~~~~~eiivt~Ga~~al~~~~~a 108 (393)
T COG0436 43 PEHIIEAAIEALEEGGTHYTPSAGIPELREAIAEKYKRRYGLDVDPEEEIIVTAGAKEALFLAFLA 108 (393)
T ss_pred CHHHHHHHHHHHhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCeEEEeCCHHHHHHHHHHH
Confidence 4568899988887652 1 111222334555555555533 122 3499999999999988863
No 308
>PLN02724 Molybdenum cofactor sulfurase
Probab=66.73 E-value=54 Score=25.22 Aligned_cols=37 Identities=19% Similarity=0.342 Sum_probs=27.5
Q ss_pred chHHHHHHHHHHhhCCCCCC--eEEeeCChHHHHHHHHH
Q psy6206 31 HDNLVLCARKLASLLPDPLS--VCFFVNSGSEANDLALR 67 (83)
Q Consensus 31 ~~~~~~la~~l~~~~p~~~~--~v~f~~sGseA~e~Alk 67 (83)
.+...+..+.+.+.+....+ .|.|+++.|+|+.....
T Consensus 77 ~~~~e~aR~~ia~~lga~~~~~~VvFtsnaT~alnlva~ 115 (805)
T PLN02724 77 SDTIESARQQVLEYFNAPPSDYACVFTSGATAALKLVGE 115 (805)
T ss_pred HHHHHHHHHHHHHHhCCCccceEEEEeCChHHHHHHHHH
Confidence 34556777888888765333 58999999999997765
No 309
>PRK07718 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=66.41 E-value=13 Score=22.28 Aligned_cols=50 Identities=12% Similarity=0.056 Sum_probs=27.4
Q ss_pred CCCHHHHHHHHHHHHhhccCCCCc----chHHHHHHHHHHhhCC-CCCCeEEeeC
Q psy6206 7 HCHPAVVKAACTQLALLNTNNRFL----HDNLVLCARKLASLLP-DPLSVCFFVN 56 (83)
Q Consensus 7 h~~p~i~~a~~~~~~~~~~~~~~~----~~~~~~la~~l~~~~p-~~~~~v~f~~ 56 (83)
+..|.|.+.+...+.......-.. .....++.+++.+.++ +....|+|++
T Consensus 84 ~~~p~Ird~ii~~L~~~~~~~l~~~~G~~~Lr~el~~~in~~l~~g~V~~Vyft~ 138 (142)
T PRK07718 84 KRDFQVKNIIIEELADMNAEDFKGKKGLEALKEQLKEKINNLMQEGKVEKVYITS 138 (142)
T ss_pred hcChhhHHHHHHHHHcCCHHHhcChhHHHHHHHHHHHHHHHhhccCceEEEEEEe
Confidence 345777777777776652211111 1223455555555553 4567889875
No 310
>PF15144 DUF4576: Domain of unknown function (DUF4576)
Probab=66.37 E-value=10 Score=20.84 Aligned_cols=28 Identities=18% Similarity=0.182 Sum_probs=19.4
Q ss_pred eCChHHHHHHHHHHH-HhhcCCCceEEec
Q psy6206 55 VNSGSEANDLALRLA-RVHTNNDDVITQD 82 (83)
Q Consensus 55 ~~sGseA~e~Alk~a-r~~~~r~~ii~~~ 82 (83)
..=|+|-+|+|+.+. |..+..+.++-|+
T Consensus 51 n~LGteIiEnAVefiLrSMtR~tgF~E~~ 79 (88)
T PF15144_consen 51 NLLGTEIIENAVEFILRSMTRSTGFMEFE 79 (88)
T ss_pred HHhhHHHHHHHHHHHHHHhhcccCceecC
Confidence 345999999999954 5555555565554
No 311
>COG1139 Uncharacterized conserved protein containing a ferredoxin-like domain [Energy production and conversion]
Probab=66.03 E-value=20 Score=25.93 Aligned_cols=28 Identities=7% Similarity=0.223 Sum_probs=24.4
Q ss_pred CeEEeeCChHHHHHHHHHHHHhhcCCCc
Q psy6206 50 SVCFFVNSGSEANDLALRLARVHTNNDD 77 (83)
Q Consensus 50 ~~v~f~~sGseA~e~Alk~ar~~~~r~~ 77 (83)
.+|+|..++.||++..-+++....+|+.
T Consensus 79 g~vy~A~~aedA~~ii~~iv~~k~~k~v 106 (459)
T COG1139 79 GHVYFAKDAEDAREIIGEIVGEKNGKKV 106 (459)
T ss_pred CEEEEeCCHHHHHHHHHHHHhhccCcEE
Confidence 5999999999999999999987777643
No 312
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=65.62 E-value=37 Score=23.87 Aligned_cols=44 Identities=14% Similarity=0.055 Sum_probs=36.8
Q ss_pred HHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhhcCCCceEE
Q psy6206 36 LCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVHTNNDDVIT 80 (83)
Q Consensus 36 ~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~~~r~~ii~ 80 (83)
++.+.+.++++.+.+.+|=+....+..+.|+++..+ +|+..+|.
T Consensus 242 ~vv~~i~~~T~gG~d~~~e~~G~~~~~~~al~~~~~-~G~~v~iG 285 (366)
T COG1062 242 DVVEAIVELTDGGADYAFECVGNVEVMRQALEATHR-GGTSVIIG 285 (366)
T ss_pred hHHHHHHHhcCCCCCEEEEccCCHHHHHHHHHHHhc-CCeEEEEe
Confidence 789999999998899998888889999999998888 56655544
No 313
>PF05165 GGDN: GGDN family; InterPro: IPR007839 GTP cyclohydrolase III catalyses the formation of 2-amino-5-formylamino-6- ribofuranosylamino-4(3H)-pyrimidinone ribonucleotide monophosphate and inorganic phosphate from GTP. The enzyme also has an independent pyrophosphate phosphohydrolase activity. The proteins are 200-270 amino acids in length.; GO: 0003933 GTP cyclohydrolase activity, 0009058 biosynthetic process; PDB: 2QV6_B.
Probab=63.21 E-value=42 Score=22.35 Aligned_cols=81 Identities=10% Similarity=0.055 Sum_probs=48.0
Q ss_pred CccCCCCCCHHHHHHHHHHHHh----h-------cc----------CCCCcchHHHHHHHHHHhhCCCCCCe-EEeeCCh
Q psy6206 1 MSLPVGHCHPAVVKAACTQLAL----L-------NT----------NNRFLHDNLVLCARKLASLLPDPLSV-CFFVNSG 58 (83)
Q Consensus 1 ~~~~lGh~~p~i~~a~~~~~~~----~-------~~----------~~~~~~~~~~~la~~l~~~~p~~~~~-v~f~~sG 58 (83)
|+..+|...+...|.++..+-. . .. .++...+....+-+.+.+..|-..+. +-...+=
T Consensus 12 WTetlg~~RE~~iQ~lQa~l~~~l~~~~~~~~g~~~~~R~D~~iavtnGi~~~~~~~i~~~i~~~~Pv~vs~~ig~g~tP 91 (246)
T PF05165_consen 12 WTETLGPDREWDIQTLQARLYADLQQFFSSRGGLVFPTRYDNMIAVTNGIDLEDHARIQESIRNRYPVTVSMCIGYGETP 91 (246)
T ss_dssp HCCSSS---HHHHHHHHHHHHHHHHHHHHTTT-EEE-TTSSEEEEE-TT--HHHHHHHHHHHHHHSSS-EEEEEEEESSH
T ss_pred CcCCCCCchHHHHHHHHHHHHHHHHHHHHhcCCEEeeeeeeeEEEeecCCCHHHHHHHHHHHHhcCCceEEEEEecCCCH
Confidence 7889999999988887664422 1 00 12233455677888888999865553 4566788
Q ss_pred HHHHHHHHHHHHhhc-----CCCceEEe
Q psy6206 59 SEANDLALRLARVHT-----NNDDVITQ 81 (83)
Q Consensus 59 seA~e~Alk~ar~~~-----~r~~ii~~ 81 (83)
-||.+.|-+.-+... +|+.|+.+
T Consensus 92 ~eA~~~a~~~lq~~g~~q~~~r~E~l~~ 119 (246)
T PF05165_consen 92 YEAQENATECLQNAGSAQDEGRKEILAI 119 (246)
T ss_dssp HHHHHHHHHHHHHH--TT-TT----EEE
T ss_pred HHHHHHHHHHHHhcccccccccceeecc
Confidence 999999999766543 45666665
No 314
>PF15005 IZUMO: Izumo sperm-egg fusion
Probab=62.87 E-value=23 Score=22.01 Aligned_cols=38 Identities=21% Similarity=0.247 Sum_probs=25.8
Q ss_pred CCCHHHHHHHHHHHHhhccCCCCcchHHHHHHHHHHhhC
Q psy6206 7 HCHPAVVKAACTQLALLNTNNRFLHDNLVLCARKLASLL 45 (83)
Q Consensus 7 h~~p~i~~a~~~~~~~~~~~~~~~~~~~~~la~~l~~~~ 45 (83)
+++|.+++++......+ .++.+..+....+++++....
T Consensus 8 ~CDp~v~eal~~L~~~~-lP~~~~~~~~~~~~~rl~~~m 45 (160)
T PF15005_consen 8 QCDPSVVEALKSLRHDY-LPSHLHVEGLQARAQRLLLEM 45 (160)
T ss_pred eCCHHHHHHHHHHHHHh-CccccCcchHHHHHHHHHHHh
Confidence 57999999998766665 233444556667777776654
No 315
>PLN02414 glycine dehydrogenase (decarboxylating)
Probab=62.79 E-value=31 Score=27.43 Aligned_cols=39 Identities=8% Similarity=0.023 Sum_probs=28.0
Q ss_pred hHHHHHHHHHHhhCCCCCCeEEeeCChH----HHHHHHHHHHHhh
Q psy6206 32 DNLVLCARKLASLLPDPLSVCFFVNSGS----EANDLALRLARVH 72 (83)
Q Consensus 32 ~~~~~la~~l~~~~p~~~~~v~f~~sGs----eA~e~Alk~ar~~ 72 (83)
+...++.+.|++++ +.+.|.|+.+.+ +|+..+++--.+.
T Consensus 568 ~~~~~~r~~la~i~--g~~~v~f~pnaga~ge~a~~~vi~~~~~~ 610 (993)
T PLN02414 568 EMFEDLGDLLCEIT--GFDSFSLQPNAGAAGEYAGLMVIRAYHLS 610 (993)
T ss_pred HHHHHHHHHHHHHh--CCCeEEEcCCCcHHHHHHHHHHHHHHHhc
Confidence 34567888889998 458999987666 6777777755444
No 316
>PRK09276 LL-diaminopimelate aminotransferase; Provisional
Probab=62.70 E-value=41 Score=22.88 Aligned_cols=60 Identities=8% Similarity=-0.041 Sum_probs=33.8
Q ss_pred CHHHHHHHHHHHHhhccCCCCc-----chHHHHHHHHHHhhCC--CCCC-eEEeeCChHHHHHHHHHHH
Q psy6206 9 HPAVVKAACTQLALLNTNNRFL-----HDNLVLCARKLASLLP--DPLS-VCFFVNSGSEANDLALRLA 69 (83)
Q Consensus 9 ~p~i~~a~~~~~~~~~~~~~~~-----~~~~~~la~~l~~~~p--~~~~-~v~f~~sGseA~e~Alk~a 69 (83)
.|.+.+++.+.+.... ...|+ .+....+++.+.+..+ .+.+ .|.+++++++++..+++..
T Consensus 46 ~~~~~~~~~~~~~~~~-~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~ii~t~G~~~~i~~~~~~~ 113 (385)
T PRK09276 46 PDHIIEAMCKAVEDPE-NHQYPSYEGMLEFRKAVADWYKRRFGVELDPETEVISLIGSKEGIAHIPLAF 113 (385)
T ss_pred CHHHHHHHHHHHhCCC-CCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEccCcHHHHHHHHHHh
Confidence 3567777777665421 11121 2233445555543322 1233 5888888999999888754
No 317
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=62.22 E-value=6.7 Score=24.20 Aligned_cols=39 Identities=23% Similarity=0.215 Sum_probs=22.2
Q ss_pred CcchHHHHHHHHHHhhCCCCCCeE--EeeCChHHHHHHHHHH
Q psy6206 29 FLHDNLVLCARKLASLLPDPLSVC--FFVNSGSEANDLALRL 68 (83)
Q Consensus 29 ~~~~~~~~la~~l~~~~p~~~~~v--~f~~sGseA~e~Alk~ 68 (83)
++.+...+|.++|.+.+-.+-+-| .|+-|||.+.. |+++
T Consensus 172 h~~~kP~~l~~~lI~~~t~~gdiVlDpF~GSGTT~~a-a~~l 212 (231)
T PF01555_consen 172 HPTQKPVELIERLIKASTNPGDIVLDPFAGSGTTAVA-AEEL 212 (231)
T ss_dssp -TT-S-HHHHHHHHHHHS-TT-EEEETT-TTTHHHHH-HHHT
T ss_pred eeecCCHHHHHHHHHhhhccceeeehhhhccChHHHH-HHHc
Confidence 345556788888887653223444 78999998764 3443
No 318
>COG2130 Putative NADP-dependent oxidoreductases [General function prediction only]
Probab=62.06 E-value=12 Score=25.89 Aligned_cols=35 Identities=29% Similarity=0.368 Sum_probs=30.0
Q ss_pred HHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHh
Q psy6206 36 LCARKLASLLPDPLSVCFFVNSGSEANDLALRLARV 71 (83)
Q Consensus 36 ~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~ 71 (83)
++++.|.+..|.+. .+||-|.|.+--|+.+.....
T Consensus 207 d~~~~L~~a~P~GI-DvyfeNVGg~v~DAv~~~ln~ 241 (340)
T COG2130 207 DFAQALKEACPKGI-DVYFENVGGEVLDAVLPLLNL 241 (340)
T ss_pred cHHHHHHHHCCCCe-EEEEEcCCchHHHHHHHhhcc
Confidence 78899999999766 599999999999999986543
No 319
>PRK12785 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=62.02 E-value=18 Score=22.31 Aligned_cols=48 Identities=21% Similarity=0.157 Sum_probs=24.8
Q ss_pred CHHHHHHHHHHHHhhccCCCCcc----hHHHHHHHHHHhhC-CCCCCeEEeeC
Q psy6206 9 HPAVVKAACTQLALLNTNNRFLH----DNLVLCARKLASLL-PDPLSVCFFVN 56 (83)
Q Consensus 9 ~p~i~~a~~~~~~~~~~~~~~~~----~~~~~la~~l~~~~-p~~~~~v~f~~ 56 (83)
-|.|.+.+...+.......-... ....++.+++...+ ++....|+|++
T Consensus 110 ~p~Ird~i~~~Ls~~~~~~L~~~~Gk~~Lr~ei~~~in~~l~~~~V~~VlFt~ 162 (166)
T PRK12785 110 MPRVTDAFQTYLRELRPSDLNGSAGLFRLKEELLRRVNVALAPAQVNAVLFKE 162 (166)
T ss_pred chHHHHHHHHHHHhCCHHHhcChHHHHHHHHHHHHHHHhhcCCCceeEEEEEe
Confidence 46677777666655421101111 22344555555443 45577899975
No 320
>KOG1359|consensus
Probab=61.59 E-value=39 Score=23.63 Aligned_cols=62 Identities=23% Similarity=0.187 Sum_probs=39.2
Q ss_pred CCCC-CCHHHHHHHHHHHHhhcc---CCC---CcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHH
Q psy6206 4 PVGH-CHPAVVKAACTQLALLNT---NNR---FLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALR 67 (83)
Q Consensus 4 ~lGh-~~p~i~~a~~~~~~~~~~---~~~---~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk 67 (83)
-||- +||+|.++-.+.++.... +.. .+...-..|..+|.+.-. -+......|+-+||..++.
T Consensus 77 YLGLsshPeii~a~~~aleeyGaGlssvrfIcGtq~iHk~LE~kiAqfh~--rED~ilypscfdANag~fe 145 (417)
T KOG1359|consen 77 YLGLSSHPEIINAGQKALEEYGAGLSSVRFICGTQDIHKLLESKIAQFHG--REDTILYPSCFDANAGAFE 145 (417)
T ss_pred cccccCChHHHHHHHHHHHHhCCCccceeEEecchHHHHHHHHHHHHHhC--CCceEEeccccccchHHHH
Confidence 3554 699999999999988521 111 223344567777777664 3456667777777755543
No 321
>PRK13237 tyrosine phenol-lyase; Provisional
Probab=61.14 E-value=20 Score=25.99 Aligned_cols=34 Identities=15% Similarity=0.159 Sum_probs=26.6
Q ss_pred hHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHH
Q psy6206 32 DNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALR 67 (83)
Q Consensus 32 ~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk 67 (83)
+...+|-+.+.+.+ +.+.+.+++||+.|...+..
T Consensus 78 ~s~~~LE~~vAe~l--G~e~aV~v~sGTaAl~ll~~ 111 (460)
T PRK13237 78 RNFYHLEETVQEYY--GFKHVVPTHQGRGAENLLSR 111 (460)
T ss_pred CcHHHHHHHHHHHH--CCCeEEEeCCHHHHHHHHHH
Confidence 34567888888888 45689999999999998533
No 322
>PTZ00377 alanine aminotransferase; Provisional
Probab=60.84 E-value=58 Score=23.17 Aligned_cols=59 Identities=20% Similarity=0.154 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHhhc-cCCCCc-----chHHHHHHHHHHhh--CCCCCCeEEeeCChHHHHHHHHHHH
Q psy6206 11 AVVKAACTQLALLN-TNNRFL-----HDNLVLCARKLASL--LPDPLSVCFFVNSGSEANDLALRLA 69 (83)
Q Consensus 11 ~i~~a~~~~~~~~~-~~~~~~-----~~~~~~la~~l~~~--~p~~~~~v~f~~sGseA~e~Alk~a 69 (83)
.+.+++.+.++... ....|. .+....+++.+.+. .+...+.|++++++++++..+++..
T Consensus 92 ~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~I~it~Ga~~al~~~~~~l 158 (481)
T PTZ00377 92 DVVARAKEYLNAIGGGTGAYTDSAGYPFVRKAVAAFIERRDGVPKDPSDIFLTDGASSGIKLLLQLL 158 (481)
T ss_pred HHHHHHHHHHHhCCCcccCcCcccCCHHHHHHHHHHHHHhcCCCCChhhEEEcCCHHHHHHHHHHHh
Confidence 46666655554421 111121 23334555555443 2234568999999999999998854
No 323
>KOG1360|consensus
Probab=60.77 E-value=31 Score=25.06 Aligned_cols=67 Identities=27% Similarity=0.226 Sum_probs=39.1
Q ss_pred CCC-CCHHHHHHHHHHHHhhcc------CCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHH-HHHhhc
Q psy6206 5 VGH-CHPAVVKAACTQLALLNT------NNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALR-LARVHT 73 (83)
Q Consensus 5 lGh-~~p~i~~a~~~~~~~~~~------~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk-~ar~~~ 73 (83)
||. .||+|.+|+.+.+++... .....+..-++|.+.|.++...+. -..|.+| --||+..+- ++++..
T Consensus 182 Lgms~Hp~V~~A~~~tl~~hG~GAGGTRNIsG~s~~hv~LE~eLA~LHqK~a-ALlFsSC-fVANDstLftLak~lp 256 (570)
T KOG1360|consen 182 LGMSRHPEVLDAMHDTLDRHGAGAGGTRNISGHSKHHVRLEAELADLHQKEA-ALLFSSC-FVANDSTLFTLAKKLP 256 (570)
T ss_pred ccccCChHHHHHHHHHHHHcCCCcCCccccCCCCchhhhHHHHHHHHhcCcc-eeeeeee-eeccchHHHHHHHHCC
Confidence 444 489999999999998521 112345566788888888765422 2333222 334454444 555543
No 324
>TIGR00461 gcvP glycine dehydrogenase (decarboxylating). This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment.
Probab=59.22 E-value=31 Score=27.30 Aligned_cols=39 Identities=21% Similarity=0.259 Sum_probs=28.1
Q ss_pred hHHHHHHHHHHhhCCCCCCe-EEeeCChHHHHHHHHHHHHhh
Q psy6206 32 DNLVLCARKLASLLPDPLSV-CFFVNSGSEANDLALRLARVH 72 (83)
Q Consensus 32 ~~~~~la~~l~~~~p~~~~~-v~f~~sGseA~e~Alk~ar~~ 72 (83)
+..-++.+.|+++++ ++. .++.++|+.+.-+++..+|.|
T Consensus 530 q~i~elq~~l~eltG--md~~Sl~p~aGA~gE~agL~aiR~y 569 (939)
T TIGR00461 530 ELIAQLEKWLCSITG--FDAISLQPNSGAQGEYAGLRVIRSY 569 (939)
T ss_pred HHHHHHHHHHHHHHC--CCCcccCCchHHHHHHHHHHHHHHH
Confidence 345678888899984 444 466677887777788888876
No 325
>PLN02231 alanine transaminase
Probab=57.11 E-value=75 Score=23.27 Aligned_cols=37 Identities=16% Similarity=0.177 Sum_probs=26.1
Q ss_pred HHHHHHHHHhh--CCCCCCeEEeeCChHHHHHHHHHHHH
Q psy6206 34 LVLCARKLASL--LPDPLSVCFFVNSGSEANDLALRLAR 70 (83)
Q Consensus 34 ~~~la~~l~~~--~p~~~~~v~f~~sGseA~e~Alk~ar 70 (83)
...+++.+.+. .+...+.|+.++++++|+..++++..
T Consensus 174 ReaIA~~~~~r~g~~~~pe~I~iT~Ga~~ai~~~~~~l~ 212 (534)
T PLN02231 174 RDAIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLI 212 (534)
T ss_pred HHHHHHHHHhccCCCCCcccEEEeCCHHHHHHHHHHHhc
Confidence 34555555443 23445789999999999999998653
No 326
>cd01527 RHOD_YgaP Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YgaP, and similar uncharacterized putative rhodanese-related sulfurtransferases.
Probab=57.01 E-value=30 Score=18.64 Aligned_cols=27 Identities=30% Similarity=0.373 Sum_probs=19.6
Q ss_pred CCCCCCeEEeeCChHHHHHHHHHHHHh
Q psy6206 45 LPDPLSVCFFVNSGSEANDLALRLARV 71 (83)
Q Consensus 45 ~p~~~~~v~f~~sGseA~e~Alk~ar~ 71 (83)
.|.+-.-|++|.+|..+-..+.++.+.
T Consensus 51 ~~~~~~iv~~c~~g~~s~~~~~~L~~~ 77 (99)
T cd01527 51 LVGANAIIFHCRSGMRTQQNAERLAAI 77 (99)
T ss_pred CCCCCcEEEEeCCCchHHHHHHHHHHc
Confidence 344345678889998888888887765
No 327
>PF01904 DUF72: Protein of unknown function DUF72; InterPro: IPR002763 The function of this family is unknown. Aquifex aeolicus has two copies of this protein. A probable aspartyl-tRNA synthetase from Escherichia coli [] belongs to this group.; PDB: 1VPY_A 1ZTV_A 1VPQ_A.
Probab=56.82 E-value=22 Score=22.90 Aligned_cols=40 Identities=25% Similarity=0.270 Sum_probs=28.0
Q ss_pred hHHHHHHHHHHhhCCCC-CCeEEeeC-ChHHHHHHHHHHHHh
Q psy6206 32 DNLVLCARKLASLLPDP-LSVCFFVN-SGSEANDLALRLARV 71 (83)
Q Consensus 32 ~~~~~la~~l~~~~p~~-~~~v~f~~-sGseA~e~Alk~ar~ 71 (83)
+...++++++.+....+ .-.|+|.| .+..|.++|+++.+.
T Consensus 188 ~eL~~~a~~i~~~~~~~~~v~v~fnN~~~g~a~~nA~~l~~~ 229 (230)
T PF01904_consen 188 EELEEWAERIRAWAAQGKEVYVFFNNDYEGYAPENALRLKEL 229 (230)
T ss_dssp HHHHHHHHHHHHHHTCSSEEEEEE-SBCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEEeCCccchHHHHHHHHHHh
Confidence 55677888888776532 23567776 467899999998764
No 328
>PRK08455 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=56.56 E-value=22 Score=22.33 Aligned_cols=49 Identities=14% Similarity=0.085 Sum_probs=26.6
Q ss_pred CCHHHHHHHHHHHHhhccCCCCc----chHHHHHHHHHHhhC-CCCCCeEEeeC
Q psy6206 8 CHPAVVKAACTQLALLNTNNRFL----HDNLVLCARKLASLL-PDPLSVCFFVN 56 (83)
Q Consensus 8 ~~p~i~~a~~~~~~~~~~~~~~~----~~~~~~la~~l~~~~-p~~~~~v~f~~ 56 (83)
.-|.|++++...+...+...-.. .....++.+++.+.+ ++....|||++
T Consensus 125 ~~p~IRD~ii~~Ls~kt~~dL~t~~Gk~~Lk~ei~~~iN~~L~~g~V~~VyFT~ 178 (182)
T PRK08455 125 KDPVIRDIIIRILSSKTVEEVSTNKGKERLKDEIVGKLNEFLIDGFIKNVFFTD 178 (182)
T ss_pred hhhHHHHHHHHHHHcCCHHHhcCHHHHHHHHHHHHHHHHHHhccCceeEEEeEe
Confidence 44667777777665542211111 122345556665555 34567899975
No 329
>PLN02509 cystathionine beta-lyase
Probab=56.26 E-value=74 Score=22.96 Aligned_cols=36 Identities=19% Similarity=0.026 Sum_probs=26.2
Q ss_pred cchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHH
Q psy6206 30 LHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALR 67 (83)
Q Consensus 30 ~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk 67 (83)
.++....|.+.+.++.+ .+.++..+||..|+...+.
T Consensus 131 gnpt~~aLE~~lA~leg--~e~ai~~~SG~aAi~~il~ 166 (464)
T PLN02509 131 GNPTRDALESLLAKLDK--ADRAFCFTSGMAALSAVTH 166 (464)
T ss_pred CCHHHHHHHHHHHHHhC--CCEEEEeCcHHHHHHHHHH
Confidence 45667888888888774 3466777999998865553
No 330
>TIGR02981 phageshock_pspE phage shock operon rhodanese PspE. Members of this very narrowly defined protein family are proteins active as rhodanese (EC 2.8.1.1) and found in the extended variants of the phage shock protein (psp operon) in Escherichia coli and a few closely related species. Note that the designation phage shock protein PspE has been applied, incorrectly, in many instances where the genome lacks the phage shock regulon entirely.
Probab=56.00 E-value=35 Score=19.11 Aligned_cols=38 Identities=18% Similarity=0.242 Sum_probs=24.2
Q ss_pred HHHHHHHHHhhCCCCCCe-EEeeCChHHHHHHHHHHHHh
Q psy6206 34 LVLCARKLASLLPDPLSV-CFFVNSGSEANDLALRLARV 71 (83)
Q Consensus 34 ~~~la~~l~~~~p~~~~~-v~f~~sGseA~e~Alk~ar~ 71 (83)
..++.+.+.+..+..... +++|.+|..+..++..+.+.
T Consensus 43 ~~~l~~~l~~~~~~~~~~vvlyC~~G~rS~~aa~~L~~~ 81 (101)
T TIGR02981 43 LKEIKEHIATAVPDKNDTVKLYCNAGRQSGMAKDILLDM 81 (101)
T ss_pred HHHHHHHHHHhCCCCCCeEEEEeCCCHHHHHHHHHHHHc
Confidence 345555565554433334 58888999988887766544
No 331
>PRK05367 glycine dehydrogenase; Provisional
Probab=55.92 E-value=33 Score=27.12 Aligned_cols=46 Identities=13% Similarity=0.162 Sum_probs=31.9
Q ss_pred HHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhhcCC--CceEE
Q psy6206 34 LVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVHTNN--DDVIT 80 (83)
Q Consensus 34 ~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~~~r--~~ii~ 80 (83)
..++-..++++++-+...+-+...+|.+.|+++ +++.+.++ ++|+.
T Consensus 123 l~~~Qt~la~LtG~~~anaSl~d~aTAa~ea~~-~a~~~~~~~~~~vlv 170 (954)
T PRK05367 123 LLNFQTMVADLTGLEIANASLLDEATAAAEAMA-LAKRVSKSKSNRFFV 170 (954)
T ss_pred HHHHHHHHHHHHCCChhhccccccHHHHHHHHH-HhhhhccCCCCEEEE
Confidence 345667778888665667889999999999544 55555543 56665
No 332
>PLN02672 methionine S-methyltransferase
Probab=55.84 E-value=1.1e+02 Score=24.82 Aligned_cols=58 Identities=10% Similarity=-0.027 Sum_probs=36.8
Q ss_pred CHHHHHHHHHHHHhhccCCCCcchHHHHHHHHHHhhCCCCC---CeEEeeCChHHHHHHHHH
Q psy6206 9 HPAVVKAACTQLALLNTNNRFLHDNLVLCARKLASLLPDPL---SVCFFVNSGSEANDLALR 67 (83)
Q Consensus 9 ~p~i~~a~~~~~~~~~~~~~~~~~~~~~la~~l~~~~p~~~---~~v~f~~sGseA~e~Alk 67 (83)
.|.+.+++.+.+........ ..+....+++.+.+..+-+. +.|..+++..+++..++.
T Consensus 712 Pp~V~eAi~eal~~~~~s~g-~pdlr~aLa~~la~~~Gv~~d~~e~IIvt~Gs~elL~lll~ 772 (1082)
T PLN02672 712 PSAVKASIFESFVRQNISES-ETDPRPSILQFIKSNYGFPTDSCTEFVYGDTSLALFNKLVL 772 (1082)
T ss_pred CHHHHHHHHHHHhhcCCCCC-ChHHHHHHHHHHHHHhCcCCCCCCEEEEeCCHHHHHHHHHH
Confidence 57788998887655322111 23446778888877643222 378888877777776665
No 333
>TIGR02618 tyr_phenol_ly tyrosine phenol-lyase. This model describes a group of tyrosine phenol-lyase (4.1.99.2) (beta-tyrosinase), a pyridoxal-phosphate enzyme closely related to tryptophanase (4.1.99.1) (see model TIGR02617). Both belong to the beta-eliminating lyase family (pfam01212)
Probab=55.67 E-value=27 Score=25.23 Aligned_cols=32 Identities=19% Similarity=0.233 Sum_probs=26.2
Q ss_pred hHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHH
Q psy6206 32 DNLVLCARKLASLLPDPLSVCFFVNSGSEANDLA 65 (83)
Q Consensus 32 ~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~A 65 (83)
+...+|.+.+.+++ +.+.+.+++||+.|...+
T Consensus 71 ~s~~~lE~~va~~~--G~~~av~v~sGT~Al~ll 102 (450)
T TIGR02618 71 RNFYHLERTVRELY--GFKYVVPTHQGRGAENLL 102 (450)
T ss_pred CcHHHHHHHHHHHH--CCCeEEEcCCHHHHHHHH
Confidence 44568888888988 567899999999997764
No 334
>PLN02160 thiosulfate sulfurtransferase
Probab=55.18 E-value=42 Score=19.76 Aligned_cols=41 Identities=17% Similarity=0.173 Sum_probs=25.5
Q ss_pred HHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhhcCCCceEEec
Q psy6206 40 KLASLLPDPLSVCFFVNSGSEANDLALRLARVHTNNDDVITQD 82 (83)
Q Consensus 40 ~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~~~r~~ii~~~ 82 (83)
.+.+..+.+..-+++|.+|.-|..++..+... |-+++..++
T Consensus 73 ~~~~~~~~~~~IivyC~sG~RS~~Aa~~L~~~--G~~~v~~l~ 113 (136)
T PLN02160 73 QVSSLLNPADDILVGCQSGARSLKATTELVAA--GYKKVRNKG 113 (136)
T ss_pred HHHhccCCCCcEEEECCCcHHHHHHHHHHHHc--CCCCeeecC
Confidence 34343444445688899999999888777543 443444443
No 335
>PF07499 RuvA_C: RuvA, C-terminal domain; InterPro: IPR011114 In prokaryotes, RuvA, RuvB, and RuvC process the universal DNA intermediate of homologous recombination, termed Holliday junction. The tetrameric DNA helicase RuvA specifically binds to the Holliday junction and facilitates the isomerization of the junction from the stacked folded configuration to the square-planar structure []. In the RuvA tetramer, each subunit consists of three domains, I, II and III, where I and II form the major core that is responsible for Holliday junction binding and base pair rearrangements of Holliday junction executed at the crossover point, whereas domain III regulates branch migration through direct contact with RuvB. The domain represents the C-terminal domain III of RuvA. This domain plays a significant role in the ATP-dependent branch migration of the hetero-duplex through direct contact with RuvB []. Within the Holliday junction, this domain makes no interaction with the DNA.; GO: 0005524 ATP binding, 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination, 0009379 Holliday junction helicase complex; PDB: 1HJP_A 1CUK_A 1C7Y_A 1IXS_A 1IXR_B 1BVS_E 2ZTC_A 2ZTD_B 2H5X_A.
Probab=54.88 E-value=9.2 Score=18.46 Aligned_cols=19 Identities=21% Similarity=0.305 Sum_probs=13.0
Q ss_pred cCCCCCCHHHHHHHHHHHH
Q psy6206 3 LPVGHCHPAVVKAACTQLA 21 (83)
Q Consensus 3 ~~lGh~~p~i~~a~~~~~~ 21 (83)
.+|||...++.+++.+...
T Consensus 11 ~~LGy~~~e~~~av~~~~~ 29 (47)
T PF07499_consen 11 ISLGYSKAEAQKAVSKLLE 29 (47)
T ss_dssp HHTTS-HHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHhhc
Confidence 3678888888888776554
No 336
>PF01851 PC_rep: Proteasome/cyclosome repeat; InterPro: IPR002015 A weakly conserved repeat module of unknown function, which occurs in two regulatory subunits of the 26S-proteasome and in one subunit of the APC-complex (cyclosome) [].; PDB: 4ADY_A.
Probab=54.81 E-value=17 Score=16.40 Aligned_cols=20 Identities=15% Similarity=0.094 Sum_probs=13.4
Q ss_pred cCCCCCCHHHHHHHHHHHHh
Q psy6206 3 LPVGHCHPAVVKAACTQLAL 22 (83)
Q Consensus 3 ~~lGh~~p~i~~a~~~~~~~ 22 (83)
+..|++++++.+-+..++..
T Consensus 9 ~~aGs~~~~~~~~L~~~l~~ 28 (35)
T PF01851_consen 9 IYAGSGNEEVLDLLRPYLSD 28 (35)
T ss_dssp HTTTT--HHHHHHHHHHHCT
T ss_pred HHcCCCCHHHHHHHHHHHHh
Confidence 35789999898888877643
No 337
>PF03748 FliL: Flagellar basal body-associated protein FliL; InterPro: IPR005503 This FliL protein controls the rotational direction of the flagella during chemotaxis []. FliL is a cytoplasmic membrane protein associated with the basal body [].; GO: 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009425 bacterial-type flagellum basal body
Probab=54.74 E-value=27 Score=19.02 Aligned_cols=49 Identities=10% Similarity=0.088 Sum_probs=28.1
Q ss_pred CCHHHHHHHHHHHHhhccC---C-CCcchHHHHHHHHHHhhCC-CCCCeEEeeC
Q psy6206 8 CHPAVVKAACTQLALLNTN---N-RFLHDNLVLCARKLASLLP-DPLSVCFFVN 56 (83)
Q Consensus 8 ~~p~i~~a~~~~~~~~~~~---~-~~~~~~~~~la~~l~~~~p-~~~~~v~f~~ 56 (83)
..|.|.+++...+...... + ..-.....++.+.+.+.++ +....|+|+.
T Consensus 42 ~~~~ird~ii~~l~~~~~~~l~~~~g~~~Lk~~l~~~in~~l~~~~V~~V~ft~ 95 (99)
T PF03748_consen 42 NMPRIRDAIISYLSSKTAEDLSGPEGKERLKDELKDRINKILGKGKVKDVYFTD 95 (99)
T ss_pred ccHHHHHHHHHHHHcCCHHHhcChhhHHHHHHHHHHHHHHhhccCcEEEEEEEE
Confidence 4577888888877765211 1 1112334556666665554 3456788864
No 338
>PLN02994 1-aminocyclopropane-1-carboxylate synthase
Probab=53.72 E-value=49 Score=20.10 Aligned_cols=38 Identities=11% Similarity=-0.009 Sum_probs=27.8
Q ss_pred chHHHHHHHHHHhhCC----CCCCeEEeeCChHHHHHHHHHH
Q psy6206 31 HDNLVLCARKLASLLP----DPLSVCFFVNSGSEANDLALRL 68 (83)
Q Consensus 31 ~~~~~~la~~l~~~~p----~~~~~v~f~~sGseA~e~Alk~ 68 (83)
.+....+++.+.+..+ -+.++|..++++++|++.+++.
T Consensus 95 ~~lR~AiA~~l~~~~g~~v~~~pd~Ivvt~Ga~~al~~l~~~ 136 (153)
T PLN02994 95 ANFRKAIANFMAEARGGRVKFDADMIVLSAGATAANEIIMFC 136 (153)
T ss_pred HHHHHHHHHHHHHHhCCCCccchhheEEcCCHHHHHHHHHHH
Confidence 3455677777766533 2356899999999999998774
No 339
>PRK06959 putative threonine-phosphate decarboxylase; Provisional
Probab=53.37 E-value=40 Score=22.74 Aligned_cols=33 Identities=15% Similarity=-0.087 Sum_probs=25.3
Q ss_pred HHHHHHHHhhCCCC-CCeEEeeCChHHHHHHHHH
Q psy6206 35 VLCARKLASLLPDP-LSVCFFVNSGSEANDLALR 67 (83)
Q Consensus 35 ~~la~~l~~~~p~~-~~~v~f~~sGseA~e~Alk 67 (83)
.+|.+.|.+...-. .+.|+.+++++|++.....
T Consensus 56 ~~L~~~ia~~~~~~~~~~I~i~~Gs~e~i~~l~~ 89 (339)
T PRK06959 56 DGLAACAARYYGAPDAAHVLPVAGSQAAIRALPA 89 (339)
T ss_pred HHHHHHHHHHhCCCCcccEEECcCHHHHHHHHHH
Confidence 67888888877543 3689999999999985543
No 340
>PRK10302 hypothetical protein; Provisional
Probab=52.09 E-value=56 Score=21.93 Aligned_cols=42 Identities=14% Similarity=0.074 Sum_probs=30.3
Q ss_pred hHHHHHHHHHHhhCCCCCCeEEeeCC-hHHHHHHHHHHHHhhc
Q psy6206 32 DNLVLCARKLASLLPDPLSVCFFVNS-GSEANDLALRLARVHT 73 (83)
Q Consensus 32 ~~~~~la~~l~~~~p~~~~~v~f~~s-GseA~e~Alk~ar~~~ 73 (83)
+...+.+++|.+...+..-.|||-|+ +..|.++|+.+.....
T Consensus 211 ~~L~~wa~~i~~w~~~~~~yvff~n~~~~~A~~nA~~l~~~l~ 253 (272)
T PRK10302 211 ELFQVWLQKLPQWHQTTTPYLFIHTPDIAQAPELVQTLWPDLR 253 (272)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEeCCchhhHHHHHHHHHHHHh
Confidence 45677888888764333447888876 8999999998866553
No 341
>PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B ....
Probab=51.41 E-value=48 Score=23.27 Aligned_cols=53 Identities=17% Similarity=0.236 Sum_probs=36.5
Q ss_pred cCCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhhcCCCceEEe
Q psy6206 25 TNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVHTNNDDVITQ 81 (83)
Q Consensus 25 ~~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~~~r~~ii~~ 81 (83)
.++.+.++....|.+.|.++-++ ..++..+||--|+..++... .-.|. +||..
T Consensus 48 ~Y~R~gnPt~~~le~~la~Le~g--~~a~~~~SGmaAi~~~l~~l-l~~Gd-~iv~~ 100 (386)
T PF01053_consen 48 IYSRYGNPTVRALEQRLAALEGG--EDALLFSSGMAAISAALLAL-LKPGD-HIVAS 100 (386)
T ss_dssp SBTTTC-HHHHHHHHHHHHHHT---SEEEEESSHHHHHHHHHHHH-S-TTB-EEEEE
T ss_pred ceeccccccHHHHHHHHHHhhcc--cceeeccchHHHHHHHHHhh-cccCC-ceEec
Confidence 34566788888999999887643 57888899999999888733 22243 45554
No 342
>PRK15481 transcriptional regulatory protein PtsJ; Provisional
Probab=51.14 E-value=81 Score=21.92 Aligned_cols=20 Identities=10% Similarity=-0.112 Sum_probs=16.9
Q ss_pred CeEEeeCChHHHHHHHHHHH
Q psy6206 50 SVCFFVNSGSEANDLALRLA 69 (83)
Q Consensus 50 ~~v~f~~sGseA~e~Alk~a 69 (83)
+.|+.++++.+++..++...
T Consensus 142 ~~Iiit~G~~~al~~~~~~l 161 (431)
T PRK15481 142 FEIDLTSGAIDAIERLLCAH 161 (431)
T ss_pred CeEEEecCcHHHHHHHHHHh
Confidence 48999999999999888743
No 343
>TIGR03540 DapC_direct LL-diaminopimelate aminotransferase. This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation.
Probab=50.79 E-value=77 Score=21.53 Aligned_cols=60 Identities=10% Similarity=-0.048 Sum_probs=34.0
Q ss_pred CHHHHHHHHHHHHhhccCCCCc-----chHHHHHHHHHHhhC--CCCCC-eEEeeCChHHHHHHHHHHH
Q psy6206 9 HPAVVKAACTQLALLNTNNRFL-----HDNLVLCARKLASLL--PDPLS-VCFFVNSGSEANDLALRLA 69 (83)
Q Consensus 9 ~p~i~~a~~~~~~~~~~~~~~~-----~~~~~~la~~l~~~~--p~~~~-~v~f~~sGseA~e~Alk~a 69 (83)
.|.+.+++.+.+..... ..++ .+....+++.+.+.. +...+ .|.+++++++++..+++..
T Consensus 44 ~~~~~~~~~~~~~~~~~-~~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~~~~vi~t~G~~~~l~~~~~~~ 111 (383)
T TIGR03540 44 PKHIVEALCKAAENPEN-HRYPSYEGMLAYRQAVADWYKRRFGVELDPETEVLSLIGSKEGIAHIPLAF 111 (383)
T ss_pred CHHHHHHHHHHHhCCCC-CCCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCeEEECCCcHHHHHHHHHHh
Confidence 45677777776653211 1111 123345555554332 22233 6888999999999988753
No 344
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=50.19 E-value=22 Score=20.02 Aligned_cols=36 Identities=14% Similarity=0.082 Sum_probs=26.5
Q ss_pred HHHHHHhhCCCCCCeEEeeCCh-HHHHHHHHHHHHhh
Q psy6206 37 CARKLASLLPDPLSVCFFVNSG-SEANDLALRLARVH 72 (83)
Q Consensus 37 la~~l~~~~p~~~~~v~f~~sG-seA~e~Alk~ar~~ 72 (83)
+.+.+.+.+++..-.+.|-++| .+..+.++++.+..
T Consensus 46 ~~~~i~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~ 82 (130)
T PF00107_consen 46 FVEQIRELTGGRGVDVVIDCVGSGDTLQEAIKLLRPG 82 (130)
T ss_dssp HHHHHHHHTTTSSEEEEEESSSSHHHHHHHHHHEEEE
T ss_pred cccccccccccccceEEEEecCcHHHHHHHHHHhccC
Confidence 7778888887633456666677 88899999887654
No 345
>KOG1368|consensus
Probab=49.82 E-value=71 Score=22.38 Aligned_cols=40 Identities=23% Similarity=0.250 Sum_probs=30.5
Q ss_pred hHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhhc
Q psy6206 32 DNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVHT 73 (83)
Q Consensus 32 ~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~~ 73 (83)
+...+|-++..++++. +--.|..||+..|-.|++.=..-+
T Consensus 56 ~tt~rLE~~vA~l~GK--EAgLFv~SGTmgNllaIm~Hc~~r 95 (384)
T KOG1368|consen 56 PTTNRLEQRVAELFGK--EAGLFVPSGTMGNLLAIMVHCHQR 95 (384)
T ss_pred ccHHHHHHHHHHHhCc--cceeeecccccccHHHHHHHhcCC
Confidence 3456788888888854 467899999999999998544433
No 346
>PRK09148 aminotransferase; Validated
Probab=49.69 E-value=65 Score=22.28 Aligned_cols=59 Identities=10% Similarity=-0.060 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHhhccCCCCc-----chHHHHHHHHHHhhCC--CCCC-eEEeeCChHHHHHHHHHHH
Q psy6206 10 PAVVKAACTQLALLNTNNRFL-----HDNLVLCARKLASLLP--DPLS-VCFFVNSGSEANDLALRLA 69 (83)
Q Consensus 10 p~i~~a~~~~~~~~~~~~~~~-----~~~~~~la~~l~~~~p--~~~~-~v~f~~sGseA~e~Alk~a 69 (83)
+.+.+++.+.++... ...|+ .+....+++.+.+..+ ...+ .|+.++++++++..++...
T Consensus 46 ~~~~~~~~~~~~~~~-~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~I~it~G~~~al~~~~~~l 112 (405)
T PRK09148 46 QHIVDKLCETAQDPR-THRYSASKGIPGLRRAQAAYYARRFGVKLNPDTQVVATLGSKEGFANMAQAI 112 (405)
T ss_pred HHHHHHHHHHHcCcc-cCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEcCChHHHHHHHHHHh
Confidence 556777666553211 11222 2334556666544322 2234 7999999999999887754
No 347
>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]
Probab=49.55 E-value=94 Score=22.17 Aligned_cols=60 Identities=15% Similarity=0.036 Sum_probs=38.9
Q ss_pred CHHHHHHHHHHHHhhccCCCCcch-HHHHHHHHHHhhCC--CCCCeEEeeCChHHHHHHHHHH
Q psy6206 9 HPAVVKAACTQLALLNTNNRFLHD-NLVLCARKLASLLP--DPLSVCFFVNSGSEANDLALRL 68 (83)
Q Consensus 9 ~p~i~~a~~~~~~~~~~~~~~~~~-~~~~la~~l~~~~p--~~~~~v~f~~sGseA~e~Alk~ 68 (83)
.|+|.+|+.++++.......+.++ ....+.+...+.-. ...+.+.|+.+---++..+|+.
T Consensus 40 pp~i~~Al~~rvdhGvfGY~~~~~~~~~ai~~w~~~r~~~~i~~e~i~~~p~VVpgi~~~I~~ 102 (388)
T COG1168 40 PPEIIEALRERVDHGVFGYPYGSDELYAAIAHWFKQRHQWEIKPEWIVFVPGVVPGISLAIRA 102 (388)
T ss_pred CHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHhcCCCCCcceEEEcCcchHhHHHHHHH
Confidence 589999999999886332223444 44555555555432 2245789988887777777764
No 348
>PRK00162 glpE thiosulfate sulfurtransferase; Validated
Probab=49.13 E-value=45 Score=18.35 Aligned_cols=46 Identities=15% Similarity=0.020 Sum_probs=26.4
Q ss_pred HHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhhcCCCceEEecC
Q psy6206 35 VLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVHTNNDDVITQDQ 83 (83)
Q Consensus 35 ~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~~~r~~ii~~~~ 83 (83)
..+.+.+.+ .+.+..-+++|.+|..+..++..+.+. |-.++..++|
T Consensus 46 ~~l~~~~~~-~~~~~~ivv~c~~g~~s~~a~~~L~~~--G~~~v~~l~G 91 (108)
T PRK00162 46 DSLGAFMRQ-ADFDTPVMVMCYHGNSSQGAAQYLLQQ--GFDVVYSIDG 91 (108)
T ss_pred HHHHHHHHh-cCCCCCEEEEeCCCCCHHHHHHHHHHC--CchheEEecC
Confidence 345555544 444445677888898877666555433 4444555543
No 349
>COG4981 Enoyl reductase domain of yeast-type FAS1 [Lipid metabolism]
Probab=48.80 E-value=70 Score=24.19 Aligned_cols=46 Identities=13% Similarity=0.138 Sum_probs=33.8
Q ss_pred HHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhhcCCCceEEec
Q psy6206 37 CARKLASLLPDPLSVCFFVNSGSEANDLALRLARVHTNNDDVITQD 82 (83)
Q Consensus 37 la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~~~r~~ii~~~ 82 (83)
..+.+.++-..+...+.|-..--|++..-|++|........|+-.+
T Consensus 139 A~ElI~~L~~~G~~yv~fKPGtIeqI~svi~IAka~P~~pIilq~e 184 (717)
T COG4981 139 AVELIEELGDDGFPYVAFKPGTIEQIRSVIRIAKANPTFPIILQWE 184 (717)
T ss_pred HHHHHHHHhhcCceeEEecCCcHHHHHHHHHHHhcCCCCceEEEEe
Confidence 3333444434567899999999999999999999887666665544
No 350
>PF07704 PSK_trans_fac: Rv0623-like transcription factor; InterPro: IPR011660 This entry represents the Rv0623 (P96913 from SWISSPROT)-like group of transcription factors associated with the PSK operon [].
Probab=48.76 E-value=44 Score=18.14 Aligned_cols=28 Identities=39% Similarity=0.348 Sum_probs=18.9
Q ss_pred chHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHH
Q psy6206 31 HDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALR 67 (83)
Q Consensus 31 ~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk 67 (83)
++....|++.|.+.++. |=+|||..||+
T Consensus 7 d~ev~~LareLA~~tG~---------s~TeAVr~AL~ 34 (82)
T PF07704_consen 7 DPEVDRLARELARLTGE---------SKTEAVRRALR 34 (82)
T ss_pred CHHHHHHHHHHHHHHCC---------CHHHHHHHHHH
Confidence 45566777777777743 34778877776
No 351
>PRK05696 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=47.42 E-value=49 Score=20.36 Aligned_cols=49 Identities=10% Similarity=0.044 Sum_probs=23.3
Q ss_pred CCHHHHHHHHHHHHhhccCCCCcchHHHHHHHH----HHhhC-----CCCCCeEEeeC
Q psy6206 8 CHPAVVKAACTQLALLNTNNRFLHDNLVLCARK----LASLL-----PDPLSVCFFVN 56 (83)
Q Consensus 8 ~~p~i~~a~~~~~~~~~~~~~~~~~~~~~la~~----l~~~~-----p~~~~~v~f~~ 56 (83)
..|.|++++...+.......-...+-...|.+. +.+.+ ++..+.|+|++
T Consensus 109 ~~p~IRd~i~~~Ls~k~~~~L~~~~gk~~Lr~el~~~i~~~l~~~~g~~~V~~VlFt~ 166 (170)
T PRK05696 109 HIPLIESALLMTFSSATVDQLSTPAGKEELRQKALASVQETLQKVTGKPVVEKVLFTG 166 (170)
T ss_pred hhHHHHHHHHHHHhcCCHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCceeEEeeee
Confidence 346666666666655422111112223334433 33332 23467889875
No 352
>PLN03226 serine hydroxymethyltransferase; Provisional
Probab=46.46 E-value=1.1e+02 Score=22.16 Aligned_cols=28 Identities=18% Similarity=-0.140 Sum_probs=17.3
Q ss_pred HHhhCCCCCCeEEe---eCChHHHHHHHHHH
Q psy6206 41 LASLLPDPLSVCFF---VNSGSEANDLALRL 68 (83)
Q Consensus 41 l~~~~p~~~~~v~f---~~sGseA~e~Alk~ 68 (83)
..+.+......+.| .+||+-||..++..
T Consensus 89 ~~~~f~~~~~~~~~nv~~~SG~~AN~av~~a 119 (475)
T PLN03226 89 ALEAFRLDPEKWGVNVQPLSGSPANFAVYTA 119 (475)
T ss_pred HHHHhCCCcceeEEecCcCchHHHHHHHHHH
Confidence 44555443333333 38999999988873
No 353
>PRK09257 aromatic amino acid aminotransferase; Provisional
Probab=44.97 E-value=1e+02 Score=21.18 Aligned_cols=61 Identities=16% Similarity=-0.031 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHhh---ccCC-CCcchHHHHHHHHHHhhCC--CCCCeE--EeeCChHHHHHHHHHHHH
Q psy6206 10 PAVVKAACTQLALL---NTNN-RFLHDNLVLCARKLASLLP--DPLSVC--FFVNSGSEANDLALRLAR 70 (83)
Q Consensus 10 p~i~~a~~~~~~~~---~~~~-~~~~~~~~~la~~l~~~~p--~~~~~v--~f~~sGseA~e~Alk~ar 70 (83)
+.+.+++.+.++.. .+.. ....+....+++.+...-. .+.+++ ..++++++|+..++++..
T Consensus 47 ~~l~~a~~~~~~~~~~~~Y~~~~G~~~lR~aia~~~~~~~~~~~~~~~i~v~iT~Ga~~al~~~~~~l~ 115 (396)
T PRK09257 47 RAVKKAEARLLETETTKNYLPIEGLAAYRQAVQELLFGADSPALAAGRVATVQTPGGTGALRVGADFLK 115 (396)
T ss_pred HHHHHHHHHhcccccCCCcCCCCCCHHHHHHHHHHhcCCCCcccccCeEEEEecCCccHHHHHHHHHHH
Confidence 45666666554321 1111 1112333455555543321 134555 889999999999987443
No 354
>TIGR03531 selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium transferase. In the archaea and eukaryotes, the conversion of the mischarged serine to selenocysteine (Sec) on its tRNA is accomplished in two steps. This enzyme, O-phosphoseryl-tRNA(Sec) selenium transferase, acts second, after a phosphophorylation step catalyzed by a homolog of the bacterial SelA protein.
Probab=43.98 E-value=1e+02 Score=22.23 Aligned_cols=38 Identities=18% Similarity=0.156 Sum_probs=25.3
Q ss_pred HHHHHHHHhhCCCC-CCeEEeeCChH-HHHHHHHHHHHhh
Q psy6206 35 VLCARKLASLLPDP-LSVCFFVNSGS-EANDLALRLARVH 72 (83)
Q Consensus 35 ~~la~~l~~~~p~~-~~~v~f~~sGs-eA~e~Alk~ar~~ 72 (83)
..+.+.+.+.++-. ...++++++|| .++..++..+|..
T Consensus 108 ~~~e~~~~~~~G~~~~~~a~~v~~~Tg~al~laL~alr~~ 147 (444)
T TIGR03531 108 NKLVKDFLKLLGLRSIKSAFVVPLATGMSLSLCLSALRHK 147 (444)
T ss_pred HHHHHHHHHHcCCCCCCEEEEECCHHHHHHHHHHHHcCCc
Confidence 34444555555321 23688999999 7999998887753
No 355
>cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1. This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins.
Probab=43.39 E-value=61 Score=18.28 Aligned_cols=43 Identities=16% Similarity=0.118 Sum_probs=23.4
Q ss_pred HHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhhcCCCceEEe
Q psy6206 37 CARKLASLLPDPLSVCFFVNSGSEANDLALRLARVHTNNDDVITQ 81 (83)
Q Consensus 37 la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~~~r~~ii~~ 81 (83)
+...+....+.+..-|++|.+|..|...+..+.+. |-+++..+
T Consensus 53 ~~~~l~~~~~~~~~ivv~C~~G~rs~~aa~~L~~~--G~~~v~~l 95 (117)
T cd01522 53 FLAELEEKVGKDRPVLLLCRSGNRSIAAAEAAAQA--GFTNVYNV 95 (117)
T ss_pred HHHHHHhhCCCCCeEEEEcCCCccHHHHHHHHHHC--CCCeEEEC
Confidence 33444443333334567777888887776666432 44444433
No 356
>PF04232 SpoVS: Stage V sporulation protein S (SpoVS); InterPro: IPR007347 In Bacillus subtilis this protein interferes with sporulation at an early stage and this inhibitory effect is overcome by SpoIIB and SpoVG. SpoVS seems to play a positive role in allowing progression beyond stage V of sporulation. Null mutations in the spoVS gene block sporulation at stage V, impairing the development of heat resistance and coat assembly [].; PDB: 2EH1_B 2EK0_B.
Probab=43.17 E-value=60 Score=18.07 Aligned_cols=36 Identities=22% Similarity=0.195 Sum_probs=22.9
Q ss_pred HHHHHHHhhCCCCCCeEEeeCChHHHHHHHHH---HHHhh
Q psy6206 36 LCARKLASLLPDPLSVCFFVNSGSEANDLALR---LARVH 72 (83)
Q Consensus 36 ~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk---~ar~~ 72 (83)
.++..|...+-. -..+-...-|..|+..|+| +||.|
T Consensus 14 ~vAgAIa~~lre-~~~v~lqaiGa~AvnqAvKAIAiAR~~ 52 (86)
T PF04232_consen 14 AVAGAIAGVLRE-GGKVELQAIGAGAVNQAVKAIAIARGY 52 (86)
T ss_dssp HHHHHHHHHHHH-TSEEEEEE-SHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc-CCcEEEEEECHHHHHHHHHHHHHHHHh
Confidence 344444443321 2377778889999999999 66766
No 357
>PRK09440 avtA valine--pyruvate transaminase; Provisional
Probab=42.76 E-value=79 Score=21.78 Aligned_cols=37 Identities=14% Similarity=-0.095 Sum_probs=24.6
Q ss_pred HHHHHHHHHHhhC--CCCCCeEEeeCChHHHHHHHHHHH
Q psy6206 33 NLVLCARKLASLL--PDPLSVCFFVNSGSEANDLALRLA 69 (83)
Q Consensus 33 ~~~~la~~l~~~~--p~~~~~v~f~~sGseA~e~Alk~a 69 (83)
....+++.+.... +-..+.|..++++.+++..++.+.
T Consensus 79 LR~aia~~~~~~~g~~v~~~~I~it~Ga~~al~~~~~~l 117 (416)
T PRK09440 79 LIEALAALLNERYGWNISPQNIALTNGSQSAFFYLFNLF 117 (416)
T ss_pred HHHHHHHHHHHHhCCCCChhhEEEccChHHHHHHHHHHH
Confidence 3345555554321 223468999999999999888754
No 358
>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.
Probab=42.31 E-value=57 Score=17.62 Aligned_cols=33 Identities=15% Similarity=0.229 Sum_probs=21.5
Q ss_pred CCeEEeeCChHHHHHHHHHHHHhhcCCCceEEecC
Q psy6206 49 LSVCFFVNSGSEANDLALRLARVHTNNDDVITQDQ 83 (83)
Q Consensus 49 ~~~v~f~~sGseA~e~Alk~ar~~~~r~~ii~~~~ 83 (83)
..-|++|.+|..|...+..+.+. |-.++..++|
T Consensus 59 ~~vv~~c~~g~rs~~~~~~l~~~--G~~~v~~l~G 91 (101)
T cd01528 59 KDIVVLCHHGGRSMQVAQWLLRQ--GFENVYNLQG 91 (101)
T ss_pred CeEEEEeCCCchHHHHHHHHHHc--CCccEEEecC
Confidence 44678888998887777766552 4445555543
No 359
>PRK05664 threonine-phosphate decarboxylase; Reviewed
Probab=42.16 E-value=83 Score=21.05 Aligned_cols=30 Identities=7% Similarity=-0.195 Sum_probs=23.6
Q ss_pred HHHHHHHHhhCCCCCCeEEeeCChHHHHHHHH
Q psy6206 35 VLCARKLASLLPDPLSVCFFVNSGSEANDLAL 66 (83)
Q Consensus 35 ~~la~~l~~~~p~~~~~v~f~~sGseA~e~Al 66 (83)
.+|.+.|++... .+.|+.++++.|++..++
T Consensus 52 ~~Lr~~ia~~~~--~~~I~it~Gs~~al~~~~ 81 (330)
T PRK05664 52 DGLEAAARAYYG--APQLLPVAGSQAAIQALP 81 (330)
T ss_pred HHHHHHHHHHhC--CCCEEECcCHHHHHHHHH
Confidence 467777777763 468999999999998875
No 360
>PRK07021 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=41.78 E-value=54 Score=19.98 Aligned_cols=48 Identities=13% Similarity=0.070 Sum_probs=22.7
Q ss_pred CHHHHHHHHHHHHhhccCCCCcchHHHH----HHHHHHhhCC-----CCCCeEEeeC
Q psy6206 9 HPAVVKAACTQLALLNTNNRFLHDNLVL----CARKLASLLP-----DPLSVCFFVN 56 (83)
Q Consensus 9 ~p~i~~a~~~~~~~~~~~~~~~~~~~~~----la~~l~~~~p-----~~~~~v~f~~ 56 (83)
-|.|++.+...+.......-...+-... +.+++.+.+. .....|+|++
T Consensus 102 ~p~IRd~ii~~Ls~k~~~~L~~~eGk~~Lk~ei~~~in~~l~~~~~~~~V~~VlFt~ 158 (162)
T PRK07021 102 LPEVRSRLLLLLSRKHAAELATEEGKQKLAAEIKQTLSQPLVPGQPPQVVTDVLFTA 158 (162)
T ss_pred CHHHHHHHHHHHhcCCHHHhcCHHHHHHHHHHHHHHHHHHHhccCCCCceeEEeeee
Confidence 4566666666655442111111233334 4444544442 2356888875
No 361
>PHA02955 hypothetical protein; Provisional
Probab=41.74 E-value=32 Score=22.43 Aligned_cols=29 Identities=14% Similarity=0.276 Sum_probs=20.6
Q ss_pred CeEEeeCChHHHHHHHHH-HHHhhcCCCce
Q psy6206 50 SVCFFVNSGSEANDLALR-LARVHTNNDDV 78 (83)
Q Consensus 50 ~~v~f~~sGseA~e~Alk-~ar~~~~r~~i 78 (83)
-.+.|.||||.+-.-+|| +.+..++++++
T Consensus 136 ~~~~fiNSGtA~aNC~l~~i~~~ltks~~~ 165 (213)
T PHA02955 136 TDIKIINTGSAISNCGVEIILNKIKRNNKI 165 (213)
T ss_pred EEEEEEecCchhhhhhHHHHHHHHhhcCcc
Confidence 367899999999999998 44444443333
No 362
>TIGR02391 hypoth_ymh conserved hypothetical protein TIGR02391. This family consists of a relatively rare (~ 8 occurrences per 200 genomes) prokaryotic protein family. Genes for members are appear to be associated variously with phage and plasmid regions, restriction system loci, transposons, and housekeeping genes. The function is unknown.
Probab=41.70 E-value=75 Score=18.79 Aligned_cols=50 Identities=26% Similarity=0.284 Sum_probs=28.2
Q ss_pred CHHHHHHHHHHHHhhccCCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHH
Q psy6206 9 HPAVVKAACTQLALLNTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLAL 66 (83)
Q Consensus 9 ~p~i~~a~~~~~~~~~~~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Al 66 (83)
||+|.+...+.....++ ..-..+....+.+++.+.++. ..+|++-++.|+
T Consensus 2 Hp~v~~~~~~~~~~g~Y-~~AV~eA~K~v~~~iR~~tG~-------~~dg~~L~~~aF 51 (125)
T TIGR02391 2 HPKVLGFCREELLLGNY-FHAVFEAVKIVEEKIRELTGD-------SLDGVELIDQAF 51 (125)
T ss_pred CHHHHHHHHHHHhcCcH-HHHHHHHHHHHHHHHHHHhCC-------CCchHHHHHHHh
Confidence 78888888776655321 111223444566666666531 455677666666
No 363
>PRK07681 aspartate aminotransferase; Provisional
Probab=41.66 E-value=1.1e+02 Score=20.91 Aligned_cols=61 Identities=2% Similarity=-0.183 Sum_probs=35.0
Q ss_pred CHHHHHHHHHHHHhhcc---CCCCcchHHHHHHHHHHhhC--CCCC-CeEEeeCChHHHHHHHHHHH
Q psy6206 9 HPAVVKAACTQLALLNT---NNRFLHDNLVLCARKLASLL--PDPL-SVCFFVNSGSEANDLALRLA 69 (83)
Q Consensus 9 ~p~i~~a~~~~~~~~~~---~~~~~~~~~~~la~~l~~~~--p~~~-~~v~f~~sGseA~e~Alk~a 69 (83)
.|.+.+++.+.+..... ......+....+++.+.... +-.. +.|+.++++++++..+++..
T Consensus 47 ~~~~~~~~~~~~~~~~~~~y~~~G~~~lr~aia~~~~~~~g~~~~~~~~I~it~G~~~al~~~~~~~ 113 (399)
T PRK07681 47 ADFVREEMVHTANQKESYGYTLSGIQEFHEAVTEYYNNTHNVILNADKEVLLLMGSQDGLVHLPMVY 113 (399)
T ss_pred CHHHHHHHHHHHhccccCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCeEEECCCcHHHHHHHHHHh
Confidence 35577777766543211 11111233355666665432 2234 68999999999999887643
No 364
>cd01525 RHOD_Kc Member of the Rhodanese Homology Domain superfamily. Included in this CD are the rhodanese-like domains found C-terminal of the serine/threonine protein kinases catalytic (S_TKc) domain and the Tre-2, BUB2p, Cdc16p (TBC) domain. The putative active site Cys residue is not present in this CD.
Probab=41.25 E-value=60 Score=17.53 Aligned_cols=32 Identities=19% Similarity=0.104 Sum_probs=20.3
Q ss_pred CeEEeeCChHHHHHHHHHHHHhhcCCCceEEecC
Q psy6206 50 SVCFFVNSGSEANDLALRLARVHTNNDDVITQDQ 83 (83)
Q Consensus 50 ~~v~f~~sGseA~e~Alk~ar~~~~r~~ii~~~~ 83 (83)
.-|+++.+|..+...|..+.+. |-++|..++|
T Consensus 67 ~vv~~c~~g~~s~~~a~~L~~~--G~~~v~~l~G 98 (105)
T cd01525 67 IIVIVSHSHKHAALFAAFLVKC--GVPRVCILDG 98 (105)
T ss_pred eEEEEeCCCccHHHHHHHHHHc--CCCCEEEEeC
Confidence 3567788888887777665443 5555555543
No 365
>cd01447 Polysulfide_ST Polysulfide-sulfurtransferase - Rhodanese Homology Domain. This domain is believed to serve as a polysulfide binding and transferase domain in anaerobic gram-negative bacteria, functioning in oxidative phosphorylation with polysulfide-sulfur as a terminal electron acceptor. The active site contains the same conserved cysteine that is the catalytic residue in other Rhodanese Homology Domain proteins.
Probab=41.17 E-value=35 Score=18.29 Aligned_cols=33 Identities=15% Similarity=0.126 Sum_probs=19.2
Q ss_pred CCeEEeeCChHHHHHHHHHHHHhhcCCCceEEecC
Q psy6206 49 LSVCFFVNSGSEANDLALRLARVHTNNDDVITQDQ 83 (83)
Q Consensus 49 ~~~v~f~~sGseA~e~Alk~ar~~~~r~~ii~~~~ 83 (83)
..-|++|.+|..|-..+..+.+ . |-.+|..++|
T Consensus 62 ~~ivv~c~~g~~s~~~~~~l~~-~-G~~~v~~l~G 94 (103)
T cd01447 62 KPFVFYCASGWRSALAGKTLQD-M-GLKPVYNIEG 94 (103)
T ss_pred CeEEEEcCCCCcHHHHHHHHHH-c-ChHHhEeecC
Confidence 3457888888877665554433 2 4444555543
No 366
>KOG1196|consensus
Probab=40.87 E-value=60 Score=22.62 Aligned_cols=36 Identities=22% Similarity=0.310 Sum_probs=28.9
Q ss_pred HHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhh
Q psy6206 36 LCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVH 72 (83)
Q Consensus 36 ~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~ 72 (83)
.+.+.|.+..|.+. .+||-|-|....|+.+...+.+
T Consensus 211 ~~~~aL~r~~P~GI-DiYfeNVGG~~lDavl~nM~~~ 246 (343)
T KOG1196|consen 211 DLSAALKRCFPEGI-DIYFENVGGKMLDAVLLNMNLH 246 (343)
T ss_pred CHHHHHHHhCCCcc-eEEEeccCcHHHHHHHHhhhhc
Confidence 46667777888766 4999999999999999866654
No 367
>KOG0174|consensus
Probab=40.84 E-value=36 Score=22.09 Aligned_cols=23 Identities=26% Similarity=0.372 Sum_probs=19.0
Q ss_pred CCeEEeeCChHHHHHHHHH-HHHh
Q psy6206 49 LSVCFFVNSGSEANDLALR-LARV 71 (83)
Q Consensus 49 ~~~v~f~~sGseA~e~Alk-~ar~ 71 (83)
-+++|.|-|||.|-..|+- +++.
T Consensus 57 tD~i~cCRSGSAADtQaiaD~~~Y 80 (224)
T KOG0174|consen 57 TDNIYCCRSGSAADTQAIADIVRY 80 (224)
T ss_pred cccEEEecCCchhhHHHHHHHHHH
Confidence 4799999999999998887 5544
No 368
>COG2861 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=40.59 E-value=70 Score=21.40 Aligned_cols=64 Identities=22% Similarity=0.285 Sum_probs=37.7
Q ss_pred CCCCCHHHHHHHHHHHHhhc--------cCCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhh
Q psy6206 5 VGHCHPAVVKAACTQLALLN--------TNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVH 72 (83)
Q Consensus 5 lGh~~p~i~~a~~~~~~~~~--------~~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~ 72 (83)
.+-+-.++.+.+...+.+.+ +.+.+++. .++.+.+.+.+. -...||..|||-+...|-++|...
T Consensus 101 ~~~s~~e~~~rl~~a~~~v~~~~GlnNhmGs~~tsn--~~aM~~~m~~Lk--~r~l~flDs~T~a~S~a~~iAk~~ 172 (250)
T COG2861 101 PGMSAEEILRRLRKAMNKVPDAVGLNNHMGSRFTSN--EDAMEKLMEALK--ERGLYFLDSGTIANSLAGKIAKEI 172 (250)
T ss_pred cCCCHHHHHHHHHHHHhhCccceeehhhhhhhhcCc--HHHHHHHHHHHH--HCCeEEEcccccccchhhhhHhhc
Confidence 34444677777777777642 12223321 233344444442 235788889999988888888655
No 369
>COG2994 HlyC ACP:hemolysin acyltransferase (hemolysin-activating protein) [Posttranslational modification, protein turnover, chaperones]
Probab=40.37 E-value=19 Score=22.07 Aligned_cols=16 Identities=25% Similarity=0.341 Sum_probs=11.4
Q ss_pred CccCCCCCCHHHHHHH
Q psy6206 1 MSLPVGHCHPAVVKAA 16 (83)
Q Consensus 1 ~~~~lGh~~p~i~~a~ 16 (83)
|.++|||.++.+.+..
T Consensus 104 ~iAPfGh~r~~~~dl~ 119 (148)
T COG2994 104 WIAPFGHSRQMVKDLH 119 (148)
T ss_pred EEccCCchHHHHHHHH
Confidence 4578999998665443
No 370
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=39.82 E-value=60 Score=17.12 Aligned_cols=44 Identities=20% Similarity=0.191 Sum_probs=26.5
Q ss_pred HHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhhcCCCceEEec
Q psy6206 36 LCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVHTNNDDVITQD 82 (83)
Q Consensus 36 ~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~~~r~~ii~~~ 82 (83)
++.+.+.. .|.+..-|++|.+|..|...+..+.+. |-.++..++
T Consensus 45 ~~~~~~~~-~~~~~~ivv~c~~g~~s~~a~~~l~~~--G~~~v~~l~ 88 (96)
T cd01444 45 SLDDWLGD-LDRDRPVVVYCYHGNSSAQLAQALREA--GFTDVRSLA 88 (96)
T ss_pred HHHHHHhh-cCCCCCEEEEeCCCChHHHHHHHHHHc--CCceEEEcC
Confidence 44444433 454455678888898888877766655 333454444
No 371
>PRK05697 flagellar basal body-associated protein FliL-like protein; Validated
Probab=39.61 E-value=65 Score=19.29 Aligned_cols=48 Identities=13% Similarity=0.086 Sum_probs=22.9
Q ss_pred CHHHHHHHHHHHHhhccCCCCcchHHHHHH----HHHHhhCC-----CCCCeEEeeC
Q psy6206 9 HPAVVKAACTQLALLNTNNRFLHDNLVLCA----RKLASLLP-----DPLSVCFFVN 56 (83)
Q Consensus 9 ~p~i~~a~~~~~~~~~~~~~~~~~~~~~la----~~l~~~~p-----~~~~~v~f~~ 56 (83)
-|.|++.+...+...+...-...+-...|. +++.+.+. +..+.|+|++
T Consensus 77 ~P~IRd~ii~lLs~~t~~eL~t~eGke~Lr~eil~~in~~L~~~~g~~~V~~VlFT~ 133 (137)
T PRK05697 77 DPLIRNALVELLGQQTEDKVKSLTGREEIRQECLKQVNELLEQETGKPLVVDLLFTK 133 (137)
T ss_pred CHHHHHHHHHHHHcCCHHHhcCHHHHHHHHHHHHHHHHHHHhhccCCCceeEEeeee
Confidence 466666666655544211111223333444 44444442 2357889875
No 372
>COG1003 GcvP Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain [Amino acid transport and metabolism]
Probab=39.22 E-value=1e+02 Score=22.61 Aligned_cols=40 Identities=13% Similarity=0.110 Sum_probs=31.4
Q ss_pred hHHHHHHHHHHhhCCCCCCeEEee-CChHHHHHHHHHHHHhhc
Q psy6206 32 DNLVLCARKLASLLPDPLSVCFFV-NSGSEANDLALRLARVHT 73 (83)
Q Consensus 32 ~~~~~la~~l~~~~p~~~~~v~f~-~sGseA~e~Alk~ar~~~ 73 (83)
+.+.+|.+.|++++ +++.|.+. ++|+..=-+.|-+.|+|.
T Consensus 109 ~li~~Lq~~L~~IT--G~DavsLQP~AGAqGE~aGll~Ir~YH 149 (496)
T COG1003 109 ELIYELQEWLKEIT--GMDAVSLQPNAGAQGEYAGLLAIRAYH 149 (496)
T ss_pred HHHHHHHHHHHHhc--CCceeeccCCCCcchhhHHHHHHHHHH
Confidence 34567888888888 68888666 689988888888888884
No 373
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=39.05 E-value=17 Score=25.74 Aligned_cols=42 Identities=17% Similarity=-0.066 Sum_probs=27.9
Q ss_pred HHHHHHHHHHhhCCCCCCeE---EeeCChHHHHHHHHHHHHhhcC
Q psy6206 33 NLVLCARKLASLLPDPLSVC---FFVNSGSEANDLALRLARVHTN 74 (83)
Q Consensus 33 ~~~~la~~l~~~~p~~~~~v---~f~~sGseA~e~Alk~ar~~~~ 74 (83)
.-..||..|..++.-..+.. =+|-|||-++|+|+.-+...+|
T Consensus 175 LketLAaAil~lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg 219 (381)
T COG0116 175 LKETLAAAILLLAGWKPDEPLLDPMCGSGTILIEAALIAANIAPG 219 (381)
T ss_pred chHHHHHHHHHHcCCCCCCccccCCCCccHHHHHHHHhccccCCc
Confidence 34668888877764222222 2577999999999987644444
No 374
>PRK06654 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=38.67 E-value=97 Score=19.69 Aligned_cols=48 Identities=6% Similarity=-0.067 Sum_probs=29.2
Q ss_pred CCHHHHHHHHHHHHhhcc--CCCCcchHHHHHHHHHHhhCC-CCCCeEEeeC
Q psy6206 8 CHPAVVKAACTQLALLNT--NNRFLHDNLVLCARKLASLLP-DPLSVCFFVN 56 (83)
Q Consensus 8 ~~p~i~~a~~~~~~~~~~--~~~~~~~~~~~la~~l~~~~p-~~~~~v~f~~ 56 (83)
..|+|++++...+..... .. .......++.+++.+++. +....|||+.
T Consensus 125 r~pqIRD~Ii~~LssKt~~eL~-Gk~~LKeEI~~rIN~iL~~GkV~~VYFTe 175 (181)
T PRK06654 125 RKVRLKDIIREYFSQKTGQELK-NESQIKAEIKARINSILRNGEIKDIAFTQ 175 (181)
T ss_pred ccHHHHHHHHHHHHhCCHHHHc-CHHHHHHHHHHHHHHhcCCCceEEEEEEE
Confidence 456777777776655421 12 223344677788877764 4467889874
No 375
>cd01479 Sec24-like Sec24-like: Protein and membrane traffic in eukaryotes is mediated by at least in part by the budding and fusion of intracellular transport vesicles that selectively carry cargo proteins and lipids from donor to acceptor organelles. The two main classes of vesicular carriers within the endocytic and the biosynthetic pathways are COP- and clathrin-coated vesicles. Formation of COPII vesicles requires the ordered assembly of the coat built from several cytosolic components GTPase Sar1, complexes of Sec23-Sec24 and Sec13-Sec31. The process is initiated by the conversion of GDP to GTP by the GTPase Sar1 which then recruits the heterodimeric complex of Sec23 and Sec24. This heterodimeric complex generates the pre-budding complex. The final step leading to membrane deformation and budding of COPII-coated vesicles is carried by the heterodimeric complex Sec13-Sec31. The members of this CD belong to the Sec23-like family. Sec 24 is very similar to Sec23. The Sec23 and Sec24
Probab=38.30 E-value=1.1e+02 Score=19.84 Aligned_cols=25 Identities=16% Similarity=0.066 Sum_probs=17.2
Q ss_pred eCChHHHHHHHHHHHHhhcCCCceEEe
Q psy6206 55 VNSGSEANDLALRLARVHTNNDDVITQ 81 (83)
Q Consensus 55 ~~sGseA~e~Alk~ar~~~~r~~ii~~ 81 (83)
.++...|++.|+.+.....|| |+.|
T Consensus 114 ~~c~G~Al~~A~~lL~~~GGk--Ii~f 138 (244)
T cd01479 114 ESALGPALQAAFLLLKETGGK--IIVF 138 (244)
T ss_pred cccHHHHHHHHHHHHHhcCCE--EEEE
Confidence 355677888888877765554 6655
No 376
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=38.27 E-value=1e+02 Score=19.24 Aligned_cols=17 Identities=6% Similarity=-0.019 Sum_probs=8.0
Q ss_pred eEEeeCChHHHHHHHHH
Q psy6206 51 VCFFVNSGSEANDLALR 67 (83)
Q Consensus 51 ~v~f~~sGseA~e~Alk 67 (83)
+|||.-+.-+.++.+.+
T Consensus 50 ~vfllG~~~~v~~~~~~ 66 (177)
T TIGR00696 50 PIFLYGGKPDVLQQLKV 66 (177)
T ss_pred eEEEECCCHHHHHHHHH
Confidence 45555444444444444
No 377
>COG1922 WecG Teichoic acid biosynthesis proteins [Cell envelope biogenesis, outer membrane]
Probab=37.84 E-value=1.2e+02 Score=20.22 Aligned_cols=42 Identities=10% Similarity=-0.007 Sum_probs=29.1
Q ss_pred HHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHH-HHHhhcCCC
Q psy6206 35 VLCARKLASLLPDPLSVCFFVNSGSEANDLALR-LARVHTNND 76 (83)
Q Consensus 35 ~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk-~ar~~~~r~ 76 (83)
.+|.+.|++....+..+|||.-+--+.+|.|.. +.++|.+-+
T Consensus 94 ~Dl~~~Ll~~a~~~~~~vfllGgkp~V~~~a~~~l~~~~p~l~ 136 (253)
T COG1922 94 TDLVEALLKRAAEEGKRVFLLGGKPGVAEQAAAKLRAKYPGLK 136 (253)
T ss_pred HHHHHHHHHHhCccCceEEEecCCHHHHHHHHHHHHHHCCCce
Confidence 577888888876655688888776666666554 666666553
No 378
>PRK13699 putative methylase; Provisional
Probab=37.63 E-value=43 Score=21.61 Aligned_cols=36 Identities=19% Similarity=0.228 Sum_probs=22.7
Q ss_pred CcchHHHHHHHHHHhhCCCCCCeE--EeeCChHHHHHH
Q psy6206 29 FLHDNLVLCARKLASLLPDPLSVC--FFVNSGSEANDL 64 (83)
Q Consensus 29 ~~~~~~~~la~~l~~~~p~~~~~v--~f~~sGseA~e~ 64 (83)
.+++...+|.+++.+..-..-+-| .|+-|||.++.+
T Consensus 144 hp~~kP~~l~~~~i~~~s~~g~~vlDpf~Gsgtt~~aa 181 (227)
T PRK13699 144 HPTEKPVTSLQPLIESFTHPNAIVLDPFAGSGSTCVAA 181 (227)
T ss_pred CCCCCcHHHHHHHHHHhCCCCCEEEeCCCCCCHHHHHH
Confidence 345556788888876532223344 688899887653
No 379
>COG4423 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=37.35 E-value=75 Score=17.53 Aligned_cols=30 Identities=37% Similarity=0.337 Sum_probs=17.9
Q ss_pred hHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHH--HHH
Q psy6206 32 DNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALR--LAR 70 (83)
Q Consensus 32 ~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk--~ar 70 (83)
+....+++.|.+.++. |=++||..|++ ++|
T Consensus 8 p~~d~lar~LA~rtg~---------S~t~AV~~Al~~~lar 39 (81)
T COG4423 8 PEVDRLARELAARTGE---------SKTDAVRDALKERLAR 39 (81)
T ss_pred hHHHHHHHHHHHHhCC---------cHHHHHHHHHHHHHHH
Confidence 3445666666666632 34677777776 554
No 380
>cd01202 FRS2 Fibroblast growth factor receptor substrate 2 (FRS2/SNT1) Phosphotyrosine-binding domain. Fibroblast growth factor receptor substrate 2 (FRS2/SNT1) Phosphotyrosine-binding domain (IRS1-like). FRS2 mediates signaling downstream of the FGF receptor. It has an N-terminal PTBi domain, which has a PH-like fold and is similiar to the PTB domain that is found in insulin receptor substrate molecules. This PTBi domain is shorter than the PTB domain which is found in SHC, Numb and other proteins. The PTBi domain binds to phosphotyrosines which are in NPXpY motifs.
Probab=36.90 E-value=15 Score=21.10 Aligned_cols=32 Identities=22% Similarity=0.109 Sum_probs=27.0
Q ss_pred eEEeeCChHHHHHHHHHHHHhhcCCCceEEec
Q psy6206 51 VCFFVNSGSEANDLALRLARVHTNNDDVITQD 82 (83)
Q Consensus 51 ~v~f~~sGseA~e~Alk~ar~~~~r~~ii~~~ 82 (83)
...|-+++.+.++..++.-|.|...+.+.+|+
T Consensus 31 ~L~l~~~~~~~~~WPl~~LRRYG~d~~~FsFE 62 (102)
T cd01202 31 ELTLYISGKEPVVWPLLCLRRYGYNSDLFSFE 62 (102)
T ss_pred EEEEEcCCCCEEEccHHHhHhhccCCCEEEEE
Confidence 67778899999999999999997666777775
No 381
>PF13880 Acetyltransf_13: ESCO1/2 acetyl-transferase
Probab=36.42 E-value=22 Score=18.99 Aligned_cols=28 Identities=18% Similarity=0.258 Sum_probs=20.4
Q ss_pred CeEEeeCChHHHHHHHHHHHHhhcCCCceEEe
Q psy6206 50 SVCFFVNSGSEANDLALRLARVHTNNDDVITQ 81 (83)
Q Consensus 50 ~~v~f~~sGseA~e~Alk~ar~~~~r~~ii~~ 81 (83)
++|-| |+-++...++|++|.|+..++.|
T Consensus 43 ~~iAF----SqPT~~G~~fA~~y~~~~~flvY 70 (70)
T PF13880_consen 43 NEIAF----SQPTESGKKFAKKYFGTDDFLVY 70 (70)
T ss_pred hheEe----cCCCHhHHHHHHHHcCCCCEEeC
Confidence 35655 55667778999999988877654
No 382
>PF06883 RNA_pol_Rpa2_4: RNA polymerase I, Rpa2 specific domain ; InterPro: IPR009674 This domain is found between domain 3 and domain 5, but shows no homology to domain 4 of Rpb2. The external domains in multisubunit RNA polymerase (those most distant from the active site) are known to demonstrate more sequence variability [].; GO: 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent, 0005634 nucleus
Probab=36.33 E-value=50 Score=16.85 Aligned_cols=19 Identities=26% Similarity=0.420 Sum_probs=16.6
Q ss_pred CCCCCHHHHHHHHHHHHhh
Q psy6206 5 VGHCHPAVVKAACTQLALL 23 (83)
Q Consensus 5 lGh~~p~i~~a~~~~~~~~ 23 (83)
+||..++..+.+.++|..+
T Consensus 1 iG~~~~~~a~~~~~~LR~~ 19 (58)
T PF06883_consen 1 IGYVSPEEAEQIADQLRYL 19 (58)
T ss_pred CceecHHHHHHHHHHHHHH
Confidence 5899999999999999876
No 383
>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily. Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.
Probab=35.89 E-value=71 Score=16.85 Aligned_cols=45 Identities=18% Similarity=0.123 Sum_probs=26.2
Q ss_pred HHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhhcCCCceEEecC
Q psy6206 35 VLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVHTNNDDVITQDQ 83 (83)
Q Consensus 35 ~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~~~r~~ii~~~~ 83 (83)
..+.+.+..+ +.+..-|++|.+|..+...+.++.+. |- ++..++|
T Consensus 39 ~~~~~~~~~~-~~~~~vvl~c~~g~~a~~~a~~L~~~--G~-~v~~l~G 83 (90)
T cd01524 39 DELRDRLNEL-PKDKEIIVYCAVGLRGYIAARILTQN--GF-KVKNLDG 83 (90)
T ss_pred HHHHHHHHhc-CCCCcEEEEcCCChhHHHHHHHHHHC--CC-CEEEecC
Confidence 3455555443 33345678888887777777666433 33 4655544
No 384
>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue.
Probab=35.84 E-value=79 Score=17.35 Aligned_cols=36 Identities=14% Similarity=0.028 Sum_probs=21.6
Q ss_pred HHHHHHHHHhhCCC-CCCeEEeeCChHHHHHHHHHHH
Q psy6206 34 LVLCARKLASLLPD-PLSVCFFVNSGSEANDLALRLA 69 (83)
Q Consensus 34 ~~~la~~l~~~~p~-~~~~v~f~~sGseA~e~Alk~a 69 (83)
..++.+.+.++.+. +..-|++|.+|..+..++..+.
T Consensus 51 ~~~l~~~~~~l~~~~~~~ivv~C~~G~rs~~a~~~L~ 87 (109)
T cd01533 51 GAELVLRVGELAPDPRTPIVVNCAGRTRSIIGAQSLI 87 (109)
T ss_pred HHHHHHHHHhcCCCCCCeEEEECCCCchHHHHHHHHH
Confidence 34555555555432 2345788889988866655553
No 385
>PRK06348 aspartate aminotransferase; Provisional
Probab=35.82 E-value=1.4e+02 Score=20.32 Aligned_cols=36 Identities=8% Similarity=-0.099 Sum_probs=24.4
Q ss_pred HHHHHHHHHhhC--CCCCCeEEeeCChHHHHHHHHHHH
Q psy6206 34 LVLCARKLASLL--PDPLSVCFFVNSGSEANDLALRLA 69 (83)
Q Consensus 34 ~~~la~~l~~~~--p~~~~~v~f~~sGseA~e~Alk~a 69 (83)
...+++.+.... +...+.+.+++++++|+..++...
T Consensus 72 r~~ia~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~~ 109 (384)
T PRK06348 72 IEEIIKYYSKNYDLSFKRNEIMATVGACHGMYLALQSI 109 (384)
T ss_pred HHHHHHHHHHHhCCCCChhhEEEcCChHHHHHHHHHHh
Confidence 344555554321 234568999999999999888754
No 386
>KOG0053|consensus
Probab=35.75 E-value=1.5e+02 Score=21.31 Aligned_cols=51 Identities=18% Similarity=0.133 Sum_probs=34.8
Q ss_pred CCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhhcCCCceEEe
Q psy6206 27 NRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVHTNNDDVITQ 81 (83)
Q Consensus 27 ~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~~~r~~ii~~ 81 (83)
+...+|....+.+.+.++- +...++..+||-.|+..|+..-... | .+||++
T Consensus 72 sr~~nPt~~~le~~iaal~--ga~~~l~fsSGmaA~~~al~~L~~~-g-~~iV~~ 122 (409)
T KOG0053|consen 72 SRSGNPTRDVLESGIAALE--GAAHALLFSSGMAAITVALLHLLPA-G-DHIVAT 122 (409)
T ss_pred ccCCCCchHHHHHHHHHHh--CCceEEEecccHHHHHHHHHHhcCC-C-CcEEEe
Confidence 3445666777777777776 3456888999999999998754422 2 356655
No 387
>PF06406 StbA: StbA protein; InterPro: IPR009440 This entry represents bacterial plasmid segregation proteins ParM and StbA []. They are involved in the control of plasmid partition and required for the accurate segregation of the plasmid. ; PDB: 3IKY_C 3IKU_I 2ZGZ_B 1MWM_A 1MWK_A 2ZHC_A 2ZGY_A 2QU4_A.
Probab=35.10 E-value=1.2e+02 Score=20.39 Aligned_cols=25 Identities=24% Similarity=0.208 Sum_probs=20.1
Q ss_pred CCCeEEeeCChHHHHHHHHHHHHhh
Q psy6206 48 PLSVCFFVNSGSEANDLALRLARVH 72 (83)
Q Consensus 48 ~~~~v~f~~sGseA~e~Alk~ar~~ 72 (83)
++++|+|+-.|+.-.+.+||-+...
T Consensus 272 ~~~~I~~vGGGA~ll~~~Ik~~~~~ 296 (318)
T PF06406_consen 272 DIDRIFFVGGGAILLKDAIKEAFPV 296 (318)
T ss_dssp S-SEEEEESTTHHHHHHHHHHHHT-
T ss_pred cCCeEEEECCcHHHHHHHHHHhhCC
Confidence 4679999999999999999966543
No 388
>cd01519 RHOD_HSP67B2 Member of the Rhodanese Homology Domain superfamily. This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized.
Probab=34.99 E-value=78 Score=17.05 Aligned_cols=32 Identities=13% Similarity=0.182 Sum_probs=18.7
Q ss_pred CCeEEeeCChHHHHHHHHHHHHhhcCCCceEEec
Q psy6206 49 LSVCFFVNSGSEANDLALRLARVHTNNDDVITQD 82 (83)
Q Consensus 49 ~~~v~f~~sGseA~e~Alk~ar~~~~r~~ii~~~ 82 (83)
..-|++|.+|..|...+..+.+. |-+++..++
T Consensus 67 ~~ivv~c~~g~~s~~~~~~l~~~--G~~~v~~~~ 98 (106)
T cd01519 67 KELIFYCKAGVRSKAAAELARSL--GYENVGNYP 98 (106)
T ss_pred CeEEEECCCcHHHHHHHHHHHHc--CCccceecC
Confidence 34568888887776665555333 444455444
No 389
>KOG2040|consensus
Probab=34.62 E-value=40 Score=26.09 Aligned_cols=40 Identities=18% Similarity=0.219 Sum_probs=31.4
Q ss_pred hHHHHHHHHHHhhCCCCCCeEEee-CChHHHHHHHHHHHHhhc
Q psy6206 32 DNLVLCARKLASLLPDPLSVCFFV-NSGSEANDLALRLARVHT 73 (83)
Q Consensus 32 ~~~~~la~~l~~~~p~~~~~v~f~-~sGseA~e~Alk~ar~~~ 73 (83)
+...+|-+.||+++ ++|.+.|. |||+..--+.++..|.|.
T Consensus 582 ~lf~~Le~~Lc~iT--G~D~~s~QPNsGA~GEYaGL~~IRaY~ 622 (1001)
T KOG2040|consen 582 QLFTELEKDLCEIT--GFDSFSLQPNSGAQGEYAGLRVIRAYL 622 (1001)
T ss_pred HHHHHHHHHhheee--cccceeecCCCCcccchhhHHHHHHHH
Confidence 34567888888888 57777665 799999889999999883
No 390
>PRK13938 phosphoheptose isomerase; Provisional
Probab=34.56 E-value=1.2e+02 Score=19.16 Aligned_cols=30 Identities=23% Similarity=0.109 Sum_probs=18.8
Q ss_pred eEEeeCCh-HHHHHHHHHHHHhhcCCCceEEec
Q psy6206 51 VCFFVNSG-SEANDLALRLARVHTNNDDVITQD 82 (83)
Q Consensus 51 ~v~f~~sG-seA~e~Alk~ar~~~~r~~ii~~~ 82 (83)
-+.+..|| ++-+-.+++.|+...- ++|++.
T Consensus 117 lI~iS~SG~t~~vi~a~~~Ak~~G~--~vI~iT 147 (196)
T PRK13938 117 LFAISTSGNSMSVLRAAKTARELGV--TVVAMT 147 (196)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHCCC--EEEEEe
Confidence 45666676 6667778888877532 355543
No 391
>KOG3550|consensus
Probab=34.41 E-value=7.9 Score=24.10 Aligned_cols=14 Identities=43% Similarity=0.726 Sum_probs=10.7
Q ss_pred cCCCCCCHHHHHHH
Q psy6206 3 LPVGHCHPAVVKAA 16 (83)
Q Consensus 3 ~~lGh~~p~i~~a~ 16 (83)
.+=||.||+|++-=
T Consensus 84 aseghahprvvelp 97 (207)
T KOG3550|consen 84 ASEGHAHPRVVELP 97 (207)
T ss_pred HhccCCCCceeecC
Confidence 45699999998743
No 392
>smart00542 FYRC "FY-rich" domain, C-terminal region. is sometimes closely juxtaposed with the N-terminal region (FYRN), but sometimes is far distant. Unknown function, but occurs frequently in chromatin-associated proteins.
Probab=34.20 E-value=31 Score=18.87 Aligned_cols=16 Identities=38% Similarity=0.279 Sum_probs=11.8
Q ss_pred cCCCCCCHHHHHHHHH
Q psy6206 3 LPVGHCHPAVVKAACT 18 (83)
Q Consensus 3 ~~lGh~~p~i~~a~~~ 18 (83)
-.||-.||.|+..+.+
T Consensus 51 ~mFGls~p~V~~lie~ 66 (86)
T smart00542 51 DMFGLSSPAVVKLIEQ 66 (86)
T ss_pred HHhCCCcHHHHHHHHh
Confidence 3588899988876643
No 393
>COG1817 Uncharacterized protein conserved in archaea [Function unknown]
Probab=33.96 E-value=1.5e+02 Score=20.80 Aligned_cols=62 Identities=13% Similarity=0.092 Sum_probs=36.1
Q ss_pred CCCCCHHHHHHHHHHHHhhccCCCCc-chHHHHHHHHHHhhC-CCCC---------CeEEeeCChHHHHHHHHH
Q psy6206 5 VGHCHPAVVKAACTQLALLNTNNRFL-HDNLVLCARKLASLL-PDPL---------SVCFFVNSGSEANDLALR 67 (83)
Q Consensus 5 lGh~~p~i~~a~~~~~~~~~~~~~~~-~~~~~~la~~l~~~~-p~~~---------~~v~f~~sGseA~e~Alk 67 (83)
.||.+..+..-+.+-+++.... .++ .....+.-+...... |.+. .....+.+||.|.|+|+-
T Consensus 198 ~g~~~~~~~~~li~~l~k~giV-~ipr~~~~~eife~~~n~i~pk~~vD~l~Llyya~lvig~ggTMarEaAlL 270 (346)
T COG1817 198 NGDRGISVLPDLIKELKKYGIV-LIPREKEQAEIFEGYRNIIIPKKAVDTLSLLYYATLVIGAGGTMAREAALL 270 (346)
T ss_pred ccccchhhHHHHHHHHHhCcEE-EecCchhHHHHHhhhccccCCcccccHHHHHhhhheeecCCchHHHHHHHh
Confidence 4676665666666666665311 122 244455555555444 3221 356677899999999985
No 394
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=33.76 E-value=41 Score=22.99 Aligned_cols=21 Identities=24% Similarity=0.180 Sum_probs=18.0
Q ss_pred ccCCCCCCHHHHHHHHHHHHh
Q psy6206 2 SLPVGHCHPAVVKAACTQLAL 22 (83)
Q Consensus 2 ~~~lGh~~p~i~~a~~~~~~~ 22 (83)
+..+|++|-...+|+.+++..
T Consensus 5 s~~~G~GH~~aa~al~~~~~~ 25 (382)
T PLN02605 5 MSDTGGGHRASAEAIKDAFQL 25 (382)
T ss_pred EEcCCcChHHHHHHHHHHHHh
Confidence 457899999999999998864
No 395
>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional
Probab=33.63 E-value=56 Score=22.26 Aligned_cols=28 Identities=11% Similarity=0.300 Sum_probs=22.6
Q ss_pred EEeeCChHHHHHHHHHHHHhhcCCCceEEec
Q psy6206 52 CFFVNSGSEANDLALRLARVHTNNDDVITQD 82 (83)
Q Consensus 52 v~f~~sGseA~e~Alk~ar~~~~r~~ii~~~ 82 (83)
+...+|||--.+.|+++|+. .+ .||+.|
T Consensus 8 ~I~GpTasGKS~LAl~LA~~-~~--eIIsaD 35 (300)
T PRK14729 8 FIFGPTAVGKSNILFHFPKG-KA--EIINVD 35 (300)
T ss_pred EEECCCccCHHHHHHHHHHh-CC--cEEecc
Confidence 56678999999999999998 33 688764
No 396
>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue.
Probab=33.34 E-value=82 Score=16.79 Aligned_cols=45 Identities=16% Similarity=0.133 Sum_probs=25.1
Q ss_pred HHHHHHHhhCCC-CCCeEEeeCChHHHHHHHHHHHHhhcCCCceEEecC
Q psy6206 36 LCARKLASLLPD-PLSVCFFVNSGSEANDLALRLARVHTNNDDVITQDQ 83 (83)
Q Consensus 36 ~la~~l~~~~p~-~~~~v~f~~sGseA~e~Alk~ar~~~~r~~ii~~~~ 83 (83)
++.+.+.+..|. +..-|++|.+|..+...|..+.. .|-+ +..++|
T Consensus 43 ~l~~~~~~~~~~~~~~iv~~c~~G~rs~~aa~~L~~--~G~~-v~~l~G 88 (95)
T cd01534 43 QLVQETDHFAPVRGARIVLADDDGVRADMTASWLAQ--MGWE-VYVLEG 88 (95)
T ss_pred HHHHHHHHhcccCCCeEEEECCCCChHHHHHHHHHH--cCCE-EEEecC
Confidence 343333344442 23357888899888887777632 2444 544443
No 397
>COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion]
Probab=32.81 E-value=2.1e+02 Score=21.87 Aligned_cols=56 Identities=14% Similarity=0.019 Sum_probs=37.1
Q ss_pred CCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhhcCCCceEEecC
Q psy6206 27 NRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVHTNNDDVITQDQ 83 (83)
Q Consensus 27 ~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~~~r~~ii~~~~ 83 (83)
.+|+-.|..++.+.|.+.-+. +..|+|--|-.|.+-...-+.-.+.|.+-+.++++
T Consensus 35 aGYpGtPstei~e~la~~~~~-l~~vy~e~s~NEkvA~e~a~GA~~~G~ral~~mKh 90 (640)
T COG4231 35 AGYPGTPSTELIETLAKAKKI-LGDVYFEWSLNEKVALETAAGASYAGVRALVTMKH 90 (640)
T ss_pred eccCCCCcHHHHHHHHHhhhh-cCcEEEEecccHHHHHHHHHHhhhcCceeeEEecc
Confidence 345544555555555554421 22799999999988887777777778777777654
No 398
>COG0054 RibH Riboflavin synthase beta-chain [Coenzyme metabolism]
Probab=32.65 E-value=54 Score=20.24 Aligned_cols=18 Identities=39% Similarity=0.514 Sum_probs=14.9
Q ss_pred eCChHHHHHHHHHHHHhh
Q psy6206 55 VNSGSEANDLALRLARVH 72 (83)
Q Consensus 55 ~~sGseA~e~Alk~ar~~ 72 (83)
.|-|.||.++|++++...
T Consensus 133 gnkG~~Aa~aAlem~~l~ 150 (152)
T COG0054 133 GNKGAEAAEAALEMANLL 150 (152)
T ss_pred cccHHHHHHHHHHHHHHh
Confidence 377999999999998754
No 399
>PLN02376 1-aminocyclopropane-1-carboxylate synthase
Probab=32.60 E-value=1.3e+02 Score=21.82 Aligned_cols=37 Identities=8% Similarity=-0.107 Sum_probs=26.0
Q ss_pred HHHHHHHHHHhhC----CCCCCeEEeeCChHHHHHHHHHHH
Q psy6206 33 NLVLCARKLASLL----PDPLSVCFFVNSGSEANDLALRLA 69 (83)
Q Consensus 33 ~~~~la~~l~~~~----p~~~~~v~f~~sGseA~e~Alk~a 69 (83)
....+++.+.+.. +-+.++|..++++++|++..+...
T Consensus 99 LR~aiA~~l~~~~g~~v~v~pe~Ivit~Ga~~al~~l~~~l 139 (496)
T PLN02376 99 FRQAIAHFMGKARGGKVTFDPERVVMSGGATGANETIMFCL 139 (496)
T ss_pred HHHHHHHHHHHHhCCCCcCChhhEEEccchHHHHHHHHHHh
Confidence 3455666665542 234568999999999999888743
No 400
>PF03028 Dynein_heavy: Dynein heavy chain and region D6 of dynein motor; InterPro: IPR004273 Dynein is a multisubunit microtubule-dependent motor enzyme that acts as the force generating protein of eukaryotic cilia and flagella. The cytoplasmic isoform of dynein acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. Dynein is composed of a number of ATP-binding large subunits, intermediate size subunits and small subunits (see IPR001372 from INTERPRO). This family represents the C-terminal region of dynein heavy chain. The dynein heavy chain also exhibits ATPase activity and microtubule binding ability and acts as a motor for the movement of organelles and vesicles along microtubules. ; GO: 0003777 microtubule motor activity, 0007018 microtubule-based movement, 0030286 dynein complex; PDB: 3VKG_A 3VKH_C 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=32.57 E-value=1.6e+02 Score=22.19 Aligned_cols=68 Identities=15% Similarity=0.190 Sum_probs=33.0
Q ss_pred HHHHHHHHHHhhccCCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhhc---CCCceEEe
Q psy6206 12 VVKAACTQLALLNTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVHT---NNDDVITQ 81 (83)
Q Consensus 12 i~~a~~~~~~~~~~~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~~---~r~~ii~~ 81 (83)
+..++.+.+... ....+..++...+.+-+.+..|. ..-++..+.|+++...-.++|+... .+-.+|++
T Consensus 82 l~~~~~~~v~~~-lg~~~~~~~~~~l~~~~~~s~~~-~Pil~~~s~g~Dp~~~i~~lA~~~~~~~~~~~~isl 152 (707)
T PF03028_consen 82 LIAAMRKFVSSV-LGSRFVEPPPFDLESIYEESSPT-TPILFILSPGSDPSSEIEQLAKKKGFGNKKLQSISL 152 (707)
T ss_dssp HHHHHHHHHHHH-H-TTTTS-----HHHHHHCTTTT-C-EEEEE-TT--THHHHHHHHHCTT-----EEEEET
T ss_pred hHHHHHHHHHHH-cCchhhcCCCCCHHHHHHhcCCC-CceEEEeCCCCChHHHHHHHHHHHhhhhhheeecCC
Confidence 344444444332 12234444555666666655543 4457777889999998888998876 33445554
No 401
>cd00158 RHOD Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.
Probab=32.16 E-value=76 Score=16.10 Aligned_cols=34 Identities=15% Similarity=0.273 Sum_probs=20.6
Q ss_pred CCCCeEEeeCChHHHHHHHHHHHHhhcCCCceEEec
Q psy6206 47 DPLSVCFFVNSGSEANDLALRLARVHTNNDDVITQD 82 (83)
Q Consensus 47 ~~~~~v~f~~sGseA~e~Alk~ar~~~~r~~ii~~~ 82 (83)
.+..-++++.+|..|...+-.+... |..++..++
T Consensus 49 ~~~~vv~~c~~~~~a~~~~~~l~~~--G~~~v~~l~ 82 (89)
T cd00158 49 KDKPIVVYCRSGNRSARAAKLLRKA--GGTNVYNLE 82 (89)
T ss_pred CCCeEEEEeCCCchHHHHHHHHHHh--CcccEEEec
Confidence 3344567777888887776666543 334454444
No 402
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=31.86 E-value=89 Score=16.76 Aligned_cols=29 Identities=24% Similarity=0.209 Sum_probs=19.4
Q ss_pred hhCCCCCCeEEeeCChHHHHHHHHHHHHh
Q psy6206 43 SLLPDPLSVCFFVNSGSEANDLALRLARV 71 (83)
Q Consensus 43 ~~~p~~~~~v~f~~sGseA~e~Alk~ar~ 71 (83)
..+|.+-.-|++|.+|..+..++-.+.+.
T Consensus 56 ~~~~~~~~ivv~C~~G~rs~~aa~~L~~~ 84 (100)
T cd01523 56 DQLPDDQEVTVICAKEGSSQFVAELLAER 84 (100)
T ss_pred hhCCCCCeEEEEcCCCCcHHHHHHHHHHc
Confidence 33454445678888998887777766543
No 403
>PF11534 HTHP: Hexameric tyrosine-coordinated heme protein (HTHP); InterPro: IPR021111 HTHP is from the marine bacterium Silicibacter pomeroyi and has peroxidase and catalase activity. HTHP consists of six monomers which each binds a solvent accessible heme group and is stabilised by the interaction of three neighbouring monomers []. The heme iron is penta-coordinated with a tyrosine residue as proximal ligand [].; PDB: 2OYY_B.
Probab=31.21 E-value=68 Score=17.35 Aligned_cols=20 Identities=25% Similarity=0.439 Sum_probs=14.5
Q ss_pred EeeCChHHHHHHHHHHHHhh
Q psy6206 53 FFVNSGSEANDLALRLARVH 72 (83)
Q Consensus 53 ~f~~sGseA~e~Alk~ar~~ 72 (83)
+-+.+=-|.-+.|+|++|..
T Consensus 9 L~T~TPeeG~~LAvk~aR~~ 28 (75)
T PF11534_consen 9 LITATPEEGFQLAVKMARMA 28 (75)
T ss_dssp S--SSHHHHHHHHHHHHHHH
T ss_pred cccCChHHHHHHHHHHHHHH
Confidence 34566778889999999964
No 404
>PF02110 HK: Hydroxyethylthiazole kinase family; InterPro: IPR000417 Thiamine pyrophosphate (TPP), a required cofactor for many enzymes in the cell, is synthesised de novo in Salmonella typhimurium []. Five kinase activities have been implicated in TPP synthesis, which involves joining a 4-methyl-5-(beta-hydroxyethyl)thiazole (THZ) moiety and a 4-amino-5- hydroxymethyl-2-methylpyrimidine (HMP) moiety [, ]. THZ kinase (2.7.1.50 from EC) activity is involved in the salvage synthesis of TH-P from the thiazole: 2-methyl-4-amino-5-hydroxymethylpyrimidine diphosphate + 4-4-methyl-5-(2-phosphonooxyethyl)-thiazole = pyrophosphate + thiamin monophosphate Hydroxyethylthiazole kinase expression is regulated at the mRNA level by intracellular thiamin pyrophosphate [].; GO: 0004417 hydroxyethylthiazole kinase activity, 0009228 thiamine biosynthetic process; PDB: 1EKK_A 1ESQ_C 1C3Q_B 1ESJ_A 1EKQ_B 3HPD_A 3DZV_A 3NL5_A 3NL2_A 3NM1_A ....
Probab=31.15 E-value=1.6e+02 Score=19.52 Aligned_cols=79 Identities=16% Similarity=0.018 Sum_probs=47.8
Q ss_pred ccCCCCCCHHHHHHHHHHHHhh-----c----cCCCCcchHHHHHHHHHHhhC-CC-----------------CCCeEEe
Q psy6206 2 SLPVGHCHPAVVKAACTQLALL-----N----TNNRFLHDNLVLCARKLASLL-PD-----------------PLSVCFF 54 (83)
Q Consensus 2 ~~~lGh~~p~i~~a~~~~~~~~-----~----~~~~~~~~~~~~la~~l~~~~-p~-----------------~~~~v~f 54 (83)
.+|+|--+++-.+++...++.. + ......++...+++++|.+.. |. ...-|=.
T Consensus 54 ~iNiGTl~~~~~~~m~~A~~~A~~~~~PvVLDPVgvGas~~R~~~~~~LL~~~~~~vIrGN~sEI~aLag~~~~~kGVDs 133 (246)
T PF02110_consen 54 VINIGTLTDERIEAMKKAAKAANELGIPVVLDPVGVGASKFRTEFALELLNNYKPTVIRGNASEIAALAGEDSKAKGVDS 133 (246)
T ss_dssp EEESTTSSHHHHHHHHHHHHHHHHTT--EEEE-TTBTTBHHHHHHHHHHHCHS--SEEEEEHHHHHHHHTCCCCSCSSSS
T ss_pred EEECCCCCHhHHHHHHHHHHHHHHcCCCEEEeCcccCCcHHHHHHHHHHHHhCCCcEEEeCHHHHHHHhCcCCCCCCcCc
Confidence 3678888888888777755542 2 112334677788888887433 20 0112333
Q ss_pred eCChHHHHHHHHHHHHhh------cCCCceEE
Q psy6206 55 VNSGSEANDLALRLARVH------TNNDDVIT 80 (83)
Q Consensus 55 ~~sGseA~e~Alk~ar~~------~~r~~ii~ 80 (83)
..+..++.+.+-++|++| ||+..+|+
T Consensus 134 ~~~~~~~~~~a~~lA~k~~~vVvvTG~~D~Is 165 (246)
T PF02110_consen 134 GDSDEDAIEAAKQLAQKYNCVVVVTGEVDYIS 165 (246)
T ss_dssp SCGSHHHHHHHHHHHHHTTSEEEEESSSEEEE
T ss_pred CCcchHHHHHHHHHHHhcCCEEEEecCCcEEE
Confidence 445556788888899988 46666554
No 405
>PF01276 OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; InterPro: IPR000310 Pyridoxal-dependent decarboxylases are bacterial proteins acting on ornithine, lysine, arginine and related substrates []. One of the regions of sequence similarity contains a conserved lysine residue, which is the site of attachment of the pyridoxal-phosphate group.; GO: 0003824 catalytic activity; PDB: 1C4K_A 1ORD_A 2X3L_B 3Q16_C 3N75_A 2VYC_D.
Probab=31.13 E-value=1.9e+02 Score=20.82 Aligned_cols=43 Identities=16% Similarity=0.207 Sum_probs=25.9
Q ss_pred chHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhhcCC
Q psy6206 31 HDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVHTNN 75 (83)
Q Consensus 31 ~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~~~r 75 (83)
.....+.-+...+.. +.++.||...||-.-..|+-++-.-.|.
T Consensus 65 ~G~I~eAe~~aA~~f--GAd~t~flvnGsT~g~~a~i~a~~~~gd 107 (417)
T PF01276_consen 65 EGIIKEAEELAARAF--GADKTFFLVNGSTSGNQAMIMALCRPGD 107 (417)
T ss_dssp BTHHHHHHHHHHHHH--TESEEEEESSHHHHHHHHHHHHHTTTTC
T ss_pred ccHHHHHHHHHHHhc--CCCeEEEEecCchHHHHHHHHHhcCCCC
Confidence 444555555555666 4578999888877655555444444444
No 406
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=31.12 E-value=41 Score=23.13 Aligned_cols=21 Identities=24% Similarity=0.238 Sum_probs=17.8
Q ss_pred ccCCCCCCHHHHHHHHHHHHh
Q psy6206 2 SLPVGHCHPAVVKAACTQLAL 22 (83)
Q Consensus 2 ~~~lGh~~p~i~~a~~~~~~~ 22 (83)
+..+|.+|-...+|+.++++.
T Consensus 12 ~~~~G~GH~~aA~al~~~~~~ 32 (391)
T PRK13608 12 TGSFGNGHMQVTQSIVNQLND 32 (391)
T ss_pred ECCCCchHHHHHHHHHHHHHh
Confidence 357899999999999998865
No 407
>cd01468 trunk_domain trunk domain. COPII-coated vesicles carry proteins from the endoplasmic reticulum to the Golgi complex. This vesicular transport can be reconstituted by using three cytosolic components containing five proteins: the small GTPase Sar1p, the Sec23p/24p complex, and the Sec13p/Sec31p complex. This domain is known as the trunk domain and has an alpha/beta vWA fold and forms the dimer interface. Some members of this family possess a partial MIDAS motif that is a characteristic feature of most vWA domain proteins.
Probab=30.95 E-value=1.4e+02 Score=19.11 Aligned_cols=21 Identities=19% Similarity=0.116 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHhh--cCCCceEEe
Q psy6206 59 SEANDLALRLARVH--TNNDDVITQ 81 (83)
Q Consensus 59 seA~e~Alk~ar~~--~~r~~ii~~ 81 (83)
..|++.|..+.... .|| |+.|
T Consensus 119 G~Al~~A~~ll~~~~~gGk--I~~f 141 (239)
T cd01468 119 GPALQAAFLLLKGTFAGGR--IIVF 141 (239)
T ss_pred HHHHHHHHHHHhhcCCCce--EEEE
Confidence 45888888877766 344 6655
No 408
>PF04811 Sec23_trunk: Sec23/Sec24 trunk domain; InterPro: IPR006896 COPII (coat protein complex II)-coated vesicles carry proteins from the endoplasmic reticulum (ER) to the Golgi complex []. COPII-coated vesicles form on the ER by the stepwise recruitment of three cytosolic components: Sar1-GTP to initiate coat formation, Sec23/24 heterodimer to select SNARE and cargo molecules, and Sec13/31 to induce coat polymerisation and membrane deformation []. Sec23 p and Sec24p are structurally related, folding into five distinct domains: a beta-barrel, a zinc-finger (IPR006895 from INTERPRO), an alpha/beta trunk domain, an all-helical region (IPR006900 from INTERPRO), and a C-terminal gelsolin-like domain (IPR007123 from INTERPRO). This entry describes the Sec23/24 alpha/beta trunk domain, which is formed from a single, approximately 250-residue segment plugged into the beta-barrel between strands beta-1 and beta-19. The trunk has an alpha/beta fold with a vWA topology, and it forms the dimer interface, primarily involving strand beta-14 on Sec23 and Sec24; in addition, the trunk domain of Sec23 contacts Sar1.; GO: 0006886 intracellular protein transport, 0006888 ER to Golgi vesicle-mediated transport, 0030127 COPII vesicle coat; PDB: 3EGD_A 2NUP_A 3EG9_A 3EFO_A 3EGX_A 2NUT_A 1PD0_A 1PD1_A 1M2V_B 1PCX_A ....
Probab=30.90 E-value=1.5e+02 Score=19.01 Aligned_cols=49 Identities=16% Similarity=0.129 Sum_probs=24.9
Q ss_pred hHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhhcCCCceEEe
Q psy6206 32 DNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVHTNNDDVITQ 81 (83)
Q Consensus 32 ~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~~~r~~ii~~ 81 (83)
+....+.+.|.+..+....+.-- ++...|++.|+.+......--+|+.|
T Consensus 93 ~~i~~ll~~L~~~~~~~~~~~~~-~c~G~Al~~A~~ll~~~~~gGkI~~F 141 (243)
T PF04811_consen 93 DAIEELLESLPSIFPETAGKRPE-RCLGSALSAALSLLSSRNTGGKILVF 141 (243)
T ss_dssp HHHHHHHHHHHHHSTT-TTB------HHHHHHHHHHHHHHHTS-EEEEEE
T ss_pred HHHHHHHHHhhhhcccccccCcc-ccHHHHHHHHHHHHhccccCCEEEEE
Confidence 33566677777666543222222 33447888888876632211246666
No 409
>COG0133 TrpB Tryptophan synthase beta chain [Amino acid transport and metabolism]
Probab=30.69 E-value=2e+02 Score=20.44 Aligned_cols=45 Identities=18% Similarity=0.282 Sum_probs=30.5
Q ss_pred HHHHHHHHhhCCCCCCeEEe-----eCChHHHHHHHHHHHHh--hcCCCceEEec
Q psy6206 35 VLCARKLASLLPDPLSVCFF-----VNSGSEANDLALRLARV--HTNNDDVITQD 82 (83)
Q Consensus 35 ~~la~~l~~~~p~~~~~v~f-----~~sGseA~e~Alk~ar~--~~~r~~ii~~~ 82 (83)
..++++|.+... .++|+ ..+|+--+.++|--+.. .=||++||+=.
T Consensus 59 Ly~a~~Lt~~~g---akiyLKREDL~HtGAHKiNN~lGQ~LLAkrMGK~riIAET 110 (396)
T COG0133 59 LYFAERLTEHLG---AKIYLKREDLNHTGAHKINNALGQALLAKRMGKTRIIAET 110 (396)
T ss_pred hHHHHHHHHhhC---ceEEEehhhhcccchhhHHHHHHHHHHHHHhCCceEEeec
Confidence 456777777664 35554 46999999999983332 23788998743
No 410
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=30.45 E-value=70 Score=21.99 Aligned_cols=30 Identities=23% Similarity=0.296 Sum_probs=24.0
Q ss_pred eEEeeCChHHHHHHHHHHHHhhcCCCceEEec
Q psy6206 51 VCFFVNSGSEANDLALRLARVHTNNDDVITQD 82 (83)
Q Consensus 51 ~v~f~~sGseA~e~Alk~ar~~~~r~~ii~~~ 82 (83)
-+.+.++++--+..|+.+|+.+.+- ||+.|
T Consensus 6 i~I~GPTAsGKT~lai~LAk~~~~e--IIs~D 35 (308)
T COG0324 6 IVIAGPTASGKTALAIALAKRLGGE--IISLD 35 (308)
T ss_pred EEEECCCCcCHHHHHHHHHHHcCCc--EEecc
Confidence 4677888999999999999998763 66643
No 411
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=30.16 E-value=40 Score=25.52 Aligned_cols=41 Identities=12% Similarity=-0.111 Sum_probs=26.2
Q ss_pred HHHHHHHHHhhCCC-CCCeE---EeeCChHHHHHHHHHHHHhhcC
Q psy6206 34 LVLCARKLASLLPD-PLSVC---FFVNSGSEANDLALRLARVHTN 74 (83)
Q Consensus 34 ~~~la~~l~~~~p~-~~~~v---~f~~sGseA~e~Alk~ar~~~~ 74 (83)
...+|..|...++- ..+.. -||-|||-.+|+|+...+...|
T Consensus 174 ~etlAaa~l~~a~w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg 218 (702)
T PRK11783 174 KENLAAAILLRSGWPQEGTPLLDPMCGSGTLLIEAAMMAADIAPG 218 (702)
T ss_pred cHHHHHHHHHHcCCCCCCCeEEccCCCccHHHHHHHHHHhcCCCC
Confidence 35677777666531 11222 4678999999999986654443
No 412
>PF13302 Acetyltransf_3: Acetyltransferase (GNAT) domain; PDB: 3TTH_C 3JUW_A 2ZXV_A 2Z0Z_A 2VI7_B 3EG7_F 1YRE_C 3IGR_B 3FBU_A 2FCK_A ....
Probab=29.94 E-value=1e+02 Score=17.13 Aligned_cols=24 Identities=29% Similarity=0.239 Sum_probs=17.9
Q ss_pred ChHHHHHHHHHHHHhhcCCCceEE
Q psy6206 57 SGSEANDLALRLARVHTNNDDVIT 80 (83)
Q Consensus 57 sGseA~e~Alk~ar~~~~r~~ii~ 80 (83)
-|+|++..+++.++...+-++|++
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~i~a 123 (142)
T PF13302_consen 100 YGTEALKLLLDWAFEELGLHRIIA 123 (142)
T ss_dssp HHHHHHHHHHHHHHHTSTSSEEEE
T ss_pred HHHHHHHHHHHHHHhcCCcEEEEE
Confidence 488999999999876666555543
No 413
>PF01918 Alba: Alba; InterPro: IPR002775 Members of this family include the archaeal protein Alba and a number of eukaryotic proteins with no known function. The DNA/RNA-binding protein Alba binds double-stranded DNA tightly but without sequence specificity. It binds rRNA and mRNA in vivo, and may play a role in maintaining the structural and functional stability of RNA, and, perhaps, ribosomes. It is distributed uniformly and abundantly on the chromosome. Alba has been shown to bind DNA and affect DNA supercoiling in a temperature dependent manner []. It is regulated by acetylation (alba = acetylation lowers binding affinity) by the Sir2 protein. Alba is proposed to play a role in establishment or maintenance of chromatin architecture and thereby in transcription repression. For further information see [].; GO: 0003676 nucleic acid binding; PDB: 3TOE_B 3IAB_A 1NFJ_A 1NFH_B 2Q3V_B 1VM0_B 1NH9_A 1Y9X_A 3U6Y_C 2H9U_A ....
Probab=29.93 E-value=64 Score=16.49 Aligned_cols=40 Identities=15% Similarity=0.171 Sum_probs=24.2
Q ss_pred HHHHHHHHHHhhC----CCCCCeEEeeCChHHHHHHHHHHHHhhc
Q psy6206 33 NLVLCARKLASLL----PDPLSVCFFVNSGSEANDLALRLARVHT 73 (83)
Q Consensus 33 ~~~~la~~l~~~~----p~~~~~v~f~~sGseA~e~Alk~ar~~~ 73 (83)
+...+.+++...+ ..+.+.|.+...| .|+.-|+.+|..+.
T Consensus 10 ~~~~~v~~~~~~L~~~~~~~~~~V~l~g~G-~aI~kaI~vaei~K 53 (70)
T PF01918_consen 10 PIKSYVKRALKLLEGRENGKNDEVVLKGRG-KAISKAISVAEILK 53 (70)
T ss_dssp -HHHHHHHHHHHHT-TTHTTCSEEEEEEEC-CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhhhcCCCCEEEEEEEc-HHHHHHHHHHHHHH
Confidence 3334444444444 2346678777777 77888888776553
No 414
>COG0114 FumC Fumarase [Energy production and conversion]
Probab=29.90 E-value=42 Score=24.20 Aligned_cols=17 Identities=18% Similarity=0.137 Sum_probs=13.8
Q ss_pred eEEeeCChHHHHHHHHH
Q psy6206 51 VCFFVNSGSEANDLALR 67 (83)
Q Consensus 51 ~v~f~~sGseA~e~Alk 67 (83)
.||-+-||+.+|.++=.
T Consensus 91 ~VwQTGSGTqsNMN~NE 107 (462)
T COG0114 91 DVWQTGSGTQSNMNVNE 107 (462)
T ss_pred EEEecCCCccccccHHH
Confidence 68889999999877654
No 415
>PF08859 DGC: DGC domain; InterPro: IPR014958 This protein appears to be a zinc binding domain from the conservation of four potential chelating cysteines. The protein is named after a conserved central motif, the function is unknown.
Probab=29.82 E-value=73 Score=18.24 Aligned_cols=8 Identities=25% Similarity=0.356 Sum_probs=5.3
Q ss_pred CceEEecC
Q psy6206 76 DDVITQDQ 83 (83)
Q Consensus 76 ~~ii~~~~ 83 (83)
.+||+.+|
T Consensus 52 ~~iIaIDG 59 (110)
T PF08859_consen 52 RPIIAIDG 59 (110)
T ss_pred CceEEECC
Confidence 36777765
No 416
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=29.66 E-value=65 Score=21.29 Aligned_cols=30 Identities=27% Similarity=0.303 Sum_probs=20.3
Q ss_pred eEEeeCChHHHHHHHHHHHHhhcCCCceEEec
Q psy6206 51 VCFFVNSGSEANDLALRLARVHTNNDDVITQD 82 (83)
Q Consensus 51 ~v~f~~sGseA~e~Alk~ar~~~~r~~ii~~~ 82 (83)
.+++..||+--.+.|+.+|+++.+- ||+.+
T Consensus 4 ~~i~GpT~tGKt~~ai~lA~~~g~p--vI~~D 33 (233)
T PF01745_consen 4 YLIVGPTGTGKTALAIALAQKTGAP--VISLD 33 (233)
T ss_dssp EEEE-STTSSHHHHHHHHHHHH--E--EEEE-
T ss_pred EEEECCCCCChhHHHHHHHHHhCCC--EEEec
Confidence 4577889999999999999988543 55443
No 417
>PRK06290 aspartate aminotransferase; Provisional
Probab=29.26 E-value=2e+02 Score=20.04 Aligned_cols=60 Identities=10% Similarity=0.024 Sum_probs=33.6
Q ss_pred CHHHHHHHHHHHHhh--c-cCCCCcchHHHHHHHHHHhhCC---CCCC-eEEeeCChHHHHHHHHHH
Q psy6206 9 HPAVVKAACTQLALL--N-TNNRFLHDNLVLCARKLASLLP---DPLS-VCFFVNSGSEANDLALRL 68 (83)
Q Consensus 9 ~p~i~~a~~~~~~~~--~-~~~~~~~~~~~~la~~l~~~~p---~~~~-~v~f~~sGseA~e~Alk~ 68 (83)
.|.+.+++.+.+... . +......+....+++.+.+..+ -+.+ .|+.++++.+++..++..
T Consensus 59 ~~~~~~~l~~~~~~~~~~~Y~~~G~~~lr~aia~~~~~~~g~~~~~~~~~I~it~Gs~~al~~~~~~ 125 (410)
T PRK06290 59 DESVVEVLCEEAKKPENRGYADNGIQEFKEAAARYMEKVFGVKDIDPVTEVIHSIGSKPALAMLPSC 125 (410)
T ss_pred CHHHHHHHHHHHhCCCCCCCCCCCcHHHHHHHHHHHHHHcCCCcCCCcceEEEccCHHHHHHHHHHH
Confidence 356777777655432 1 1111112333556666544322 2233 699999999999887764
No 418
>COG1580 FliL Flagellar basal body-associated protein [Cell motility and secretion]
Probab=28.71 E-value=73 Score=19.69 Aligned_cols=50 Identities=12% Similarity=0.094 Sum_probs=27.0
Q ss_pred CCCHHHHHHHHHHHHhhccCCCCc----chHHHHHHHHHHhhCC-C-CCCeEEeeC
Q psy6206 7 HCHPAVVKAACTQLALLNTNNRFL----HDNLVLCARKLASLLP-D-PLSVCFFVN 56 (83)
Q Consensus 7 h~~p~i~~a~~~~~~~~~~~~~~~----~~~~~~la~~l~~~~p-~-~~~~v~f~~ 56 (83)
+..|.|++++...+.+.....-.+ .....++.+.|.+.+- + ....|+|++
T Consensus 100 ~~~p~vrd~li~lfsskt~~eL~t~~Gke~Lk~ei~~~in~~L~~g~~V~dV~fT~ 155 (159)
T COG1580 100 EKKPEVRDALLMLFSSKTAAELSTPEGKEKLKAEIKDRINTILKEGQVVKDVLFTN 155 (159)
T ss_pred HhhHHHHHHHHHHHHhCCHHHhcCchhHHHHHHHHHHHHHHHHhcCCeeEEEeeeh
Confidence 345778888777665542111111 1223556666665543 3 467888875
No 419
>cd01535 4RHOD_Repeat_4 Member of the Rhodanese Homology Domain superfamily, repeat 4. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 4th repeat which, in general, contains the putative catalytic Cys residue.
Probab=28.19 E-value=1.4e+02 Score=17.76 Aligned_cols=46 Identities=22% Similarity=0.125 Sum_probs=26.3
Q ss_pred HHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhhcCCCceEEec
Q psy6206 34 LVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVHTNNDDVITQD 82 (83)
Q Consensus 34 ~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~~~r~~ii~~~ 82 (83)
..+|.+.+.+ +|.+..-|++|.+|.-|...|-++... |-++|..++
T Consensus 36 ~~~l~~~l~~-l~~~~~vVv~c~~g~~a~~aa~~L~~~--G~~~v~~L~ 81 (145)
T cd01535 36 RAQLAQALEK-LPAAERYVLTCGSSLLARFAAADLAAL--TVKPVFVLE 81 (145)
T ss_pred HHHHHHHHHh-cCCCCCEEEEeCCChHHHHHHHHHHHc--CCcCeEEec
Confidence 3456666655 444455677777887776665555432 333555544
No 420
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=27.84 E-value=1.5e+02 Score=18.10 Aligned_cols=39 Identities=15% Similarity=0.037 Sum_probs=19.1
Q ss_pred HHHHHHHhhCCCCCCeEEeeCChHHHHHHHHH-HHHhhcC
Q psy6206 36 LCARKLASLLPDPLSVCFFVNSGSEANDLALR-LARVHTN 74 (83)
Q Consensus 36 ~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk-~ar~~~~ 74 (83)
++...|.+.......+|||.-+-.|.++.+.+ +-+.|.+
T Consensus 33 dl~~~ll~~~~~~~~~v~llG~~~~~~~~~~~~l~~~yp~ 72 (171)
T cd06533 33 DLMPALLELAAQKGLRVFLLGAKPEVLEKAAERLRARYPG 72 (171)
T ss_pred HHHHHHHHHHHHcCCeEEEECCCHHHHHHHHHHHHHHCCC
Confidence 33444444333223466666666666666554 3344443
No 421
>PHA02662 ORF131 putative membrane protein; Provisional
Probab=27.80 E-value=63 Score=21.24 Aligned_cols=20 Identities=35% Similarity=0.300 Sum_probs=16.7
Q ss_pred CeEEeeCChHHHHHHHHHHH
Q psy6206 50 SVCFFVNSGSEANDLALRLA 69 (83)
Q Consensus 50 ~~v~f~~sGseA~e~Alk~a 69 (83)
-.+.|.||||.+-.-+||..
T Consensus 145 ~~~qfINSGtA~aNCgl~~I 164 (226)
T PHA02662 145 LRVALVNSGHAAANCALARV 164 (226)
T ss_pred EEEEEEecCchhhhhhHHHH
Confidence 47889999999999999844
No 422
>PLN02740 Alcohol dehydrogenase-like
Probab=27.73 E-value=1.8e+02 Score=19.83 Aligned_cols=39 Identities=8% Similarity=-0.036 Sum_probs=22.8
Q ss_pred HHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhhcCC
Q psy6206 37 CARKLASLLPDPLSVCFFVNSGSEANDLALRLARVHTNN 75 (83)
Q Consensus 37 la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~~~r 75 (83)
+.+.+.+..+++.+.++=+.++.++.+.++++.+.-.|+
T Consensus 257 ~~~~v~~~~~~g~dvvid~~G~~~~~~~a~~~~~~g~G~ 295 (381)
T PLN02740 257 VHERIREMTGGGVDYSFECAGNVEVLREAFLSTHDGWGL 295 (381)
T ss_pred HHHHHHHHhCCCCCEEEECCCChHHHHHHHHhhhcCCCE
Confidence 344455555444555544444468899999987654343
No 423
>PF14705 Costars: Costars; PDB: 2L2O_A 2KRH_A.
Probab=27.73 E-value=41 Score=18.32 Aligned_cols=24 Identities=29% Similarity=0.142 Sum_probs=15.5
Q ss_pred CChHHHHHHHHHHHHhhcCCCceEEecC
Q psy6206 56 NSGSEANDLALRLARVHTNNDDVITQDQ 83 (83)
Q Consensus 56 ~sGseA~e~Alk~ar~~~~r~~ii~~~~ 83 (83)
..=+||.-..++-||++ ++|.|+|
T Consensus 38 ~~i~eaLvG~L~~ArK~----~~V~FeG 61 (77)
T PF14705_consen 38 ANISEALVGTLLRARKH----KLVDFEG 61 (77)
T ss_dssp CTTTTTHHHHHHHHHCT----TSEE-SS
T ss_pred HHHHHHHHHHHHHHHhc----Cceeecc
Confidence 34467788888887754 5666664
No 424
>cd01449 TST_Repeat_2 Thiosulfate sulfurtransferase (TST), C-terminal, catalytic domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the second repeat. Only the second repeat contains the catalytically active Cys residue.
Probab=27.60 E-value=1.2e+02 Score=16.74 Aligned_cols=46 Identities=24% Similarity=0.120 Sum_probs=25.0
Q ss_pred HHHHHHHhhC-CCCCCeEEeeCChHHHHHHHHHHHHhhcCCCceEEecC
Q psy6206 36 LCARKLASLL-PDPLSVCFFVNSGSEANDLALRLARVHTNNDDVITQDQ 83 (83)
Q Consensus 36 ~la~~l~~~~-p~~~~~v~f~~sGseA~e~Alk~ar~~~~r~~ii~~~~ 83 (83)
++.+.+.+.- +.+..-|++|.+|..|...+..+ ..-|-+++..++|
T Consensus 65 ~~~~~~~~~~~~~~~~iv~yc~~g~~s~~~~~~l--~~~G~~~v~~l~G 111 (118)
T cd01449 65 ELRALFAALGITPDKPVIVYCGSGVTACVLLLAL--ELLGYKNVRLYDG 111 (118)
T ss_pred HHHHHHHHcCCCCCCCEEEECCcHHHHHHHHHHH--HHcCCCCeeeeCC
Confidence 4444444432 22344678888887777665444 2235555665554
No 425
>PRK12566 glycine dehydrogenase; Provisional
Probab=27.47 E-value=1.5e+02 Score=23.83 Aligned_cols=46 Identities=15% Similarity=0.185 Sum_probs=25.9
Q ss_pred HHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhhcC--CCceEE
Q psy6206 34 LVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVHTN--NDDVIT 80 (83)
Q Consensus 34 ~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~~~--r~~ii~ 80 (83)
..++-..++++++-+....-....+|.+-| |+.|++.+++ |++|+.
T Consensus 126 l~e~Qtmi~~LtGm~vaNASl~D~atA~aE-A~~ma~~~~~~k~~~~~v 173 (954)
T PRK12566 126 LLNFQQMTIDLTGLDLANASLLDEATAAAE-AMALAKRVAKSKSNRFFV 173 (954)
T ss_pred HHHHHHHHHHHhCchhhhhhhccchhHHHH-HHHHHHHHhhcCCCEEEE
Confidence 345666677877432222233345566566 6666776665 556654
No 426
>cd03139 GATase1_PfpI_2 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=27.37 E-value=1.4e+02 Score=17.78 Aligned_cols=26 Identities=19% Similarity=0.091 Sum_probs=20.9
Q ss_pred CeEEeeCChHHHHHHHHHHHHhhcCC
Q psy6206 50 SVCFFVNSGSEANDLALRLARVHTNN 75 (83)
Q Consensus 50 ~~v~f~~sGseA~e~Alk~ar~~~~r 75 (83)
++++-+.++..+.+.++.+.++..|+
T Consensus 145 g~i~T~~g~~a~~~~~l~ii~~~~g~ 170 (183)
T cd03139 145 GNIWTSGGVSAGIDMALALVARLFGE 170 (183)
T ss_pred CCEEEcCcHHHHHHHHHHHHHHHhCH
Confidence 46676667799999999999887765
No 427
>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.
Probab=26.56 E-value=1.7e+02 Score=18.43 Aligned_cols=46 Identities=20% Similarity=0.144 Sum_probs=29.3
Q ss_pred hHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhhcCCCceEEec
Q psy6206 32 DNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVHTNNDDVITQD 82 (83)
Q Consensus 32 ~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~~~r~~ii~~~ 82 (83)
+.+.++++.+.++.|. ..-+-|+|--+.-+++..| ++++.++|.+.
T Consensus 122 pv~~~ia~~i~~~~Pd-Aw~iNytNP~~~vt~a~~r----~~~~~k~vGlC 167 (183)
T PF02056_consen 122 PVMLDIARDIEELCPD-AWLINYTNPMGIVTEALSR----YTPKIKVVGLC 167 (183)
T ss_dssp HHHHHHHHHHHHHTTT-SEEEE-SSSHHHHHHHHHH----HSTTSEEEEE-
T ss_pred HHHHHHHHHHHHhCCC-cEEEeccChHHHHHHHHHH----hCCCCCEEEEC
Confidence 5678899999999884 4455677776666665443 34445666553
No 428
>PRK15418 transcriptional regulator LsrR; Provisional
Probab=26.12 E-value=1.7e+02 Score=19.98 Aligned_cols=51 Identities=8% Similarity=-0.061 Sum_probs=31.6
Q ss_pred CCCCCHHHHHHHHHHHHhh--ccCCCCcchHHHHHHHHHHhhCCCCCCeEEeeCC
Q psy6206 5 VGHCHPAVVKAACTQLALL--NTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNS 57 (83)
Q Consensus 5 lGh~~p~i~~a~~~~~~~~--~~~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~s 57 (83)
||-+.+.|-+.+.++.+.. ...-..+.....+|.++|.+.+ ++.++.-.++
T Consensus 39 lgiSR~~VsRlL~~Ar~~GiV~I~I~~~~~~~~~Le~~L~~~f--gLk~~iVvp~ 91 (318)
T PRK15418 39 LGLTRLKVSRLLEKGRQSGIIRVQINSRFEGCLELENALRQHF--SLQHIRVLPA 91 (318)
T ss_pred hCCCHHHHHHHHHHHHHcCcEEEEEeCCCccHHHHHHHHHHHh--CCCEEEEEeC
Confidence 5777788888777777664 1111122334567888888888 5666665554
No 429
>TIGR01741 staph_tand_hypo conserved hypothetical protein. This model represents a tandem array of 10 proteins in Staphylococcus aureus and the C-terminal region of one protein each in Bacillus subtilis and Bacillus halodurans.
Probab=26.02 E-value=58 Score=20.21 Aligned_cols=23 Identities=17% Similarity=0.302 Sum_probs=16.5
Q ss_pred hHHHHHHHHHHhhCCCCCCeEEe
Q psy6206 32 DNLVLCARKLASLLPDPLSVCFF 54 (83)
Q Consensus 32 ~~~~~la~~l~~~~p~~~~~v~f 54 (83)
....++|+.|.++.|.+..+|+|
T Consensus 9 ~lY~eIA~~I~~mIP~EWekvy~ 31 (157)
T TIGR01741 9 DMYQEIANKINDMIPVEWEKVYL 31 (157)
T ss_pred HHHHHHHHHHHhhCchhhhhhEE
Confidence 34567888888888876655554
No 430
>COG3844 Kynureninase [Amino acid transport and metabolism]
Probab=26.01 E-value=2.5e+02 Score=20.05 Aligned_cols=49 Identities=18% Similarity=0.024 Sum_probs=28.6
Q ss_pred HHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhhc-CCCceEEec
Q psy6206 33 NLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVHT-NNDDVITQD 82 (83)
Q Consensus 33 ~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~~-~r~~ii~~~ 82 (83)
....|..+|..+.+...+.|.-++|-|--+--.+-.+.+-+ || ++|.++
T Consensus 77 lp~~lgdklApLiGA~~~Evvv~dtts~nl~k~L~aalr~~~~r-~vIv~E 126 (407)
T COG3844 77 LPERLGDKLAPLIGARAGEVVVTDTTSINLFKVLAAALRPQEGR-RVIVSE 126 (407)
T ss_pred chhHHHHHhhhhhcCCCCceEEeCCcchHHHHHHHHHhccCCCc-eEEeec
Confidence 34566677777776666778777766654444444444444 55 555554
No 431
>cd01531 Acr2p Eukaryotic arsenate resistance proteins are members of the Rhodanese Homology Domain superfamily. Included in this CD is the Saccharomyces cerevisiae arsenate reductase protein, Acr2p, and other yeast and plant homologs.
Probab=26.00 E-value=1.2e+02 Score=16.70 Aligned_cols=33 Identities=21% Similarity=0.182 Sum_probs=17.0
Q ss_pred eEEeeC-ChHHHHHHHHHHHHhh------cCCCceEEecC
Q psy6206 51 VCFFVN-SGSEANDLALRLARVH------TNNDDVITQDQ 83 (83)
Q Consensus 51 ~v~f~~-sGseA~e~Alk~ar~~------~~r~~ii~~~~ 83 (83)
-|++|. +|.-+..+|-.+.+.. .|-.+|..++|
T Consensus 65 iv~yC~~~~~r~~~aa~~l~~~~~~~~~~~G~~~v~~l~g 104 (113)
T cd01531 65 VVFHCALSQVRGPSAARKFLRYLDEEDLETSKFEVYVLHG 104 (113)
T ss_pred EEEEeecCCcchHHHHHHHHHHHHHhccccCCCeEEEEcC
Confidence 456665 5554555554444322 25556666554
No 432
>PRK10151 ribosomal-protein-L7/L12-serine acetyltransferase; Provisional
Probab=25.75 E-value=1.1e+02 Score=18.15 Aligned_cols=23 Identities=9% Similarity=-0.114 Sum_probs=16.9
Q ss_pred ChHHHHHHHHHHHHhhcCCCceE
Q psy6206 57 SGSEANDLALRLARVHTNNDDVI 79 (83)
Q Consensus 57 sGseA~e~Alk~ar~~~~r~~ii 79 (83)
-|+|++...++.++...+-++|.
T Consensus 109 ~~tea~~~l~~~~~~~~~~~ri~ 131 (179)
T PRK10151 109 IISQALQALIHHYAQSGELRRFV 131 (179)
T ss_pred HHHHHHHHHHHHHHhhCCccEEE
Confidence 38999999999888765555544
No 433
>TIGR00461 gcvP glycine dehydrogenase (decarboxylating). This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment.
Probab=25.72 E-value=1.8e+02 Score=23.33 Aligned_cols=48 Identities=13% Similarity=0.165 Sum_probs=27.7
Q ss_pred HHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhhcC-CCceEEe
Q psy6206 34 LVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVHTN-NDDVITQ 81 (83)
Q Consensus 34 ~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~~~-r~~ii~~ 81 (83)
.-++-..++++++-+....-+...+|.+-|+.+...|...+ +++|+.-
T Consensus 111 l~e~Qt~i~eLtGm~~aNaSl~d~atA~aEa~~~a~~~~~~~~~~vlv~ 159 (939)
T TIGR00461 111 LLNFQTVVSDLTGLPVANASLLDEGTAAAEAMALSFNVSKKKANKFFVA 159 (939)
T ss_pred HHHHHHHHHHHHCCChhhhhccchhhHHHHHHHHHHHhhcCCCCEEEEC
Confidence 45566778888854333446667788888854443332222 3566653
No 434
>cd01526 RHOD_ThiF Member of the Rhodanese Homology Domain superfamily. This CD includes several putative molybdopterin synthase sulfurylases including the molybdenum cofactor biosynthetic protein (CnxF) of Aspergillus nidulans and the molybdenum cofactor synthesis protein 3 (MOCS3) of Homo sapiens. These rhodanese-like domains are found C-terminal of the ThiF and MoeZ_MoeB domains.
Probab=25.66 E-value=1.4e+02 Score=16.86 Aligned_cols=32 Identities=9% Similarity=0.068 Sum_probs=19.6
Q ss_pred CCeEEeeCChHHHHHHHHHHHHhhcCC-CceEEec
Q psy6206 49 LSVCFFVNSGSEANDLALRLARVHTNN-DDVITQD 82 (83)
Q Consensus 49 ~~~v~f~~sGseA~e~Alk~ar~~~~r-~~ii~~~ 82 (83)
-.-+++|.+|..+...+..+.+. |- +++..++
T Consensus 73 ~~ivv~C~~G~rs~~aa~~L~~~--G~~~~v~~l~ 105 (122)
T cd01526 73 SPIYVVCRRGNDSQTAVRKLKEL--GLERFVRDII 105 (122)
T ss_pred CcEEEECCCCCcHHHHHHHHHHc--CCccceeeec
Confidence 34567888998888777665443 22 3455444
No 435
>PF01320 Colicin_Pyocin: Colicin immunity protein / pyocin immunity protein; InterPro: IPR023802 Bacterial colicin and pyocin immunity proteins [, ] can bind specifically to the DNase-type colicins and pyocins and inhibit their bactericidal activity. The 1.8-angstrom crystal structure of the ImmE7 protein consists of four antiparallel alpha-helices []. Sequence similarities between colicins E2, A and E1 [] are less striking. The colicin E2 (pyocin) immunity protein does not share similarity with either the colicin E3 or cloacin DF13 [] immunity proteins. Pyocin protects a cell that harbours the plasmid ColE2 encoding colicin E2 against colicin E2; it is thus essential both for autonomous replication and colicin E2 immunity []. This entry represents the structural domain of colicin and pyocin immunity proteins.; GO: 0015643 toxin binding, 0030153 bacteriocin immunity; PDB: 1GXH_A 1GXG_A 1MZ8_C 2ERH_A 1ZNV_C 1AYI_A 1UNK_A 2JBG_A 7CEI_A 1CEI_A ....
Probab=25.45 E-value=19 Score=19.96 Aligned_cols=42 Identities=12% Similarity=0.234 Sum_probs=28.8
Q ss_pred hHHHHHHHHHHhhC--CCCCCeEEeeCChHH-HHHHHHHHHHhhc
Q psy6206 32 DNLVLCARKLASLL--PDPLSVCFFVNSGSE-ANDLALRLARVHT 73 (83)
Q Consensus 32 ~~~~~la~~l~~~~--p~~~~~v~f~~sGse-A~e~Alk~ar~~~ 73 (83)
+....|.+.+.+++ |.+.+-+|+...|.| .=|.-++.+..|+
T Consensus 31 e~~d~lv~hF~~iteHP~gSDLIfYP~~~~edsPegIv~~vKeWR 75 (85)
T PF01320_consen 31 EEHDELVDHFEKITEHPDGSDLIFYPEDGREDSPEGIVKEVKEWR 75 (85)
T ss_dssp HHHHHHHHHHHHHH--TTTTHHHHS-STTSTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCCceeeeCCCCCCCCHHHHHHHHHHHH
Confidence 45677888887776 455667788877765 6677777777775
No 436
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=25.44 E-value=1.2e+02 Score=16.26 Aligned_cols=33 Identities=12% Similarity=0.171 Sum_probs=20.3
Q ss_pred CCeEEeeCChHHHHHHHHHHHHhhcCCCceEEecC
Q psy6206 49 LSVCFFVNSGSEANDLALRLARVHTNNDDVITQDQ 83 (83)
Q Consensus 49 ~~~v~f~~sGseA~e~Alk~ar~~~~r~~ii~~~~ 83 (83)
..-|++|.+|.-+..++..+.. . |-+++..++|
T Consensus 62 ~~ivvyC~~G~rs~~a~~~L~~-~-G~~~v~~l~G 94 (101)
T cd01518 62 KKVLMYCTGGIRCEKASAYLKE-R-GFKNVYQLKG 94 (101)
T ss_pred CEEEEECCCchhHHHHHHHHHH-h-CCcceeeech
Confidence 3457888899888777665533 2 4445554443
No 437
>KOG0022|consensus
Probab=25.40 E-value=1.9e+02 Score=20.43 Aligned_cols=45 Identities=11% Similarity=-0.002 Sum_probs=37.0
Q ss_pred HHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhhcCCCceEE
Q psy6206 36 LCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVHTNNDDVIT 80 (83)
Q Consensus 36 ~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~~~r~~ii~ 80 (83)
.+.+.|.+++.++.|..|=+....+....|+.-.+.-+|+.-+|.
T Consensus 250 ~i~evi~EmTdgGvDysfEc~G~~~~m~~al~s~h~GwG~sv~iG 294 (375)
T KOG0022|consen 250 PIQEVIIEMTDGGVDYSFECIGNVSTMRAALESCHKGWGKSVVIG 294 (375)
T ss_pred cHHHHHHHHhcCCceEEEEecCCHHHHHHHHHHhhcCCCeEEEEE
Confidence 477888899988888888888888999999998888878766654
No 438
>PF12390 Se-cys_synth_N: Selenocysteine synthase N terminal
Probab=25.24 E-value=81 Score=14.51 Aligned_cols=15 Identities=33% Similarity=0.279 Sum_probs=8.5
Q ss_pred CCCHHHHHHHHHHHH
Q psy6206 7 HCHPAVVKAACTQLA 21 (83)
Q Consensus 7 h~~p~i~~a~~~~~~ 21 (83)
|+++-|++++.+.++
T Consensus 23 ~~r~~v~~~vR~~ld 37 (40)
T PF12390_consen 23 YGRPLVVDAVREVLD 37 (40)
T ss_pred cCHHHHHHHHHHHHH
Confidence 455556666655554
No 439
>PF12060 DUF3541: Domain of unknown function (DUF3541); InterPro: IPR021928 This presumed domain is functionally uncharacterised. This domain is found in bacteria. This domain is about 230 amino acids in length.
Probab=25.11 E-value=2e+02 Score=18.92 Aligned_cols=41 Identities=22% Similarity=0.115 Sum_probs=23.0
Q ss_pred CCCHHHHHHHHHHHHhhc-cC-CCCcchHHHHHHHHHHhhCCC
Q psy6206 7 HCHPAVVKAACTQLALLN-TN-NRFLHDNLVLCARKLASLLPD 47 (83)
Q Consensus 7 h~~p~i~~a~~~~~~~~~-~~-~~~~~~~~~~la~~l~~~~p~ 47 (83)
-.+|+++++...|+.+.. .. .-..-+...++-+.+.+.-|+
T Consensus 145 ~TD~~MI~aWAAQLaNqVYWlrQLGe~D~v~~f~~AFr~~YPd 187 (227)
T PF12060_consen 145 LTDPAMIEAWAAQLANQVYWLRQLGEQDVVEEFIQAFRATYPD 187 (227)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHhCCC
Confidence 357888888888887641 11 111224445555556665564
No 440
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=24.88 E-value=46 Score=20.51 Aligned_cols=40 Identities=25% Similarity=0.050 Sum_probs=23.8
Q ss_pred HHHHHHHHHHhhCCCCC-CeE--EeeCChHHHHHHHHHHHHhh
Q psy6206 33 NLVLCARKLASLLPDPL-SVC--FFVNSGSEANDLALRLARVH 72 (83)
Q Consensus 33 ~~~~la~~l~~~~p~~~-~~v--~f~~sGseA~e~Alk~ar~~ 72 (83)
....+|..|..++.-.. +.+ =||-|||-.+|+|+......
T Consensus 12 L~~~lA~~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~ 54 (179)
T PF01170_consen 12 LRPTLAAALLNLAGWRPGDVVLDPFCGSGTILIEAALMGANIP 54 (179)
T ss_dssp S-HHHHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTS
T ss_pred CCHHHHHHHHHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcc
Confidence 34466777776663222 233 37889999999998755443
No 441
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=24.84 E-value=1.4e+02 Score=16.83 Aligned_cols=30 Identities=17% Similarity=0.112 Sum_probs=18.2
Q ss_pred EEeeCChHHHHHHHHH-HHHh---hcCCCceEEe
Q psy6206 52 CFFVNSGSEANDLALR-LARV---HTNNDDVITQ 81 (83)
Q Consensus 52 v~f~~sGseA~e~Alk-~ar~---~~~r~~ii~~ 81 (83)
.+|...+.+.....++ +|+. +.|+-.++..
T Consensus 22 l~f~~~~~~~~~~~~~~vAk~~~~~kgki~Fv~~ 55 (111)
T cd03072 22 LFHDKDDLESLKEFKQAVARQLISEKGAINFLTA 55 (111)
T ss_pred EEecchHHHHHHHHHHHHHHHHHhcCceEEEEEE
Confidence 4554456666666666 7777 7777555443
No 442
>TIGR02157 PA_CoA_Oxy2 phenylacetate-CoA oxygenase, PaaH subunit. Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.
Probab=24.82 E-value=74 Score=17.89 Aligned_cols=17 Identities=29% Similarity=0.540 Sum_probs=11.0
Q ss_pred HHHHHHHHHHhh-cCCCc
Q psy6206 61 ANDLALRLARVH-TNNDD 77 (83)
Q Consensus 61 A~e~Alk~ar~~-~~r~~ 77 (83)
--|.|+..||.. +.|+.
T Consensus 26 d~e~Al~~Ard~y~RR~e 43 (90)
T TIGR02157 26 DEEMALMMARDNYTRREE 43 (90)
T ss_pred CHHHHHHHHHHHhccccC
Confidence 347888888854 44444
No 443
>PF02347 GDC-P: Glycine cleavage system P-protein; InterPro: IPR020580 This family consists of glycine cleavage system P-proteins (1.4.4.2 from EC) from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex (2.1.2.10 from EC (GDC) also annotated as glycine cleavage system or glycine synthase. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor, carbon dioxide is released and the remaining methylamin moiety is then transferred to the lipoamide cofactor of the H protein. GDC consists of four proteins P, H, L and T []. The reaction catalysed by this protein is: Glycine + lipoylprotein = S-aminomethyldihydrolipoylprotein + CO2 ; GO: 0004375 glycine dehydrogenase (decarboxylating) activity, 0055114 oxidation-reduction process; PDB: 1WYV_A 1WYT_C 1WYU_A.
Probab=24.66 E-value=1.5e+02 Score=21.47 Aligned_cols=44 Identities=16% Similarity=0.221 Sum_probs=25.1
Q ss_pred HHHHHHHHHhhCCCCCCeE--EeeCChHHHHHHHHHHHHhhcCCC--ceEE
Q psy6206 34 LVLCARKLASLLPDPLSVC--FFVNSGSEANDLALRLARVHTNND--DVIT 80 (83)
Q Consensus 34 ~~~la~~l~~~~p~~~~~v--~f~~sGseA~e~Alk~ar~~~~r~--~ii~ 80 (83)
.-++-..+++++ +++-+ -....++.+-|+ +.++...++|+ +|+.
T Consensus 112 lfe~Qs~i~eLT--GmdvaNaSlyd~atA~aEa-~~ma~r~~~~~~~~vlv 159 (429)
T PF02347_consen 112 LFEYQSMICELT--GMDVANASLYDGATAAAEA-MLMAVRATKRKRNKVLV 159 (429)
T ss_dssp HHHHHHHHHHHH--TSSEE-SEBSSCCHHHHHH-HHHHHHHHTT---EEEE
T ss_pred HHHHHHHHHHhh--CCCccCCCCCChhHHHHHH-HHHHHHhcccCCcEEEE
Confidence 456778888988 45543 444455555664 45555454443 5553
No 444
>PF02875 Mur_ligase_C: Mur ligase family, glutamate ligase domain This Prosite entry is a subset of the Pfam family.; InterPro: IPR004101 The bacterial cell wall provides strength and rigidity to counteract internal osmotic pressure, and protection against the environment. The peptidoglycan layer gives the cell wall its strength, and helps maintain the overall shape of the cell. The basic peptidoglycan structure of both Gram-positive and Gram-negative bacteria is comprised of a sheet of glycan chains connected by short cross-linking polypeptides. Biosynthesis of peptidoglycan is a multi-step (11-12 steps) process comprising three main stages: (1) formation of UDP-N-acetylmuramic acid (UDPMurNAc) from N-acetylglucosamine (GlcNAc). (2) addition of a short polypeptide chain to the UDPMurNAc. (3) addition of a second GlcNAc to the disaccharide-pentapeptide building block and transport of this unit through the cytoplasmic membrane and incorporation into the growing peptidoglycan layer. Stage two involves four key Mur ligase enzymes: MurC (6.3.2.8 from EC) [], MurD (6.3.2.9 from EC) [], MurE (6.3.2.13 from EC) [] and MurF (6.3.2.10 from EC) []. These four Mur ligases are responsible for the successive additions of L-alanine, D-glutamate, meso-diaminopimelate or L-lysine, and D-alanyl-D-alanine to UDP-N-acetylmuramic acid. All four Mur ligases are topologically similar to one another, even though they display low sequence identity. They are each composed of three domains: an N-terminal Rossmann-fold domain responsible for binding the UDPMurNAc substrate; a central domain (similar to ATP-binding domains of several ATPases and GTPases); and a C-terminal domain (similar to dihydrofolate reductase fold) that appears to be associated with binding the incoming amino acid. The conserved sequence motifs found in the four Mur enzymes also map to other members of the Mur ligase family, including folylpolyglutamate synthetase, cyanophycin synthetase and the capB enzyme from Bacillales []. This entry represents the C-terminal domain from all four stage 2 Mur enzymes: UDP-N-acetylmuramate-L-alanine ligase (MurC), UDP-N-acetylmuramoylalanine-D-glutamate ligase (MurD), UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase (MurE), and UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase (MurF). This entry also includes the C-terminal domain of folylpolyglutamate synthase that transfers glutamate to folylpolyglutamate and cyanophycin synthetase that catalyses the biosynthesis of the cyanobacterial reserve material multi-L-arginyl-poly-L-aspartate (cyanophycin) []. The C-terminal domain is almost always associated with the cytoplasmic peptidoglycan synthetases, N-terminal domain (see IPR000713 from INTERPRO).; GO: 0005524 ATP binding, 0016874 ligase activity, 0009058 biosynthetic process; PDB: 2Y68_A 3UAG_A 4UAG_A 2UAG_A 1E0D_A 2XPC_A 2WJP_A 2VTE_A 2Y67_A 1EEH_A ....
Probab=24.64 E-value=1.2e+02 Score=16.05 Aligned_cols=24 Identities=4% Similarity=-0.068 Sum_probs=14.5
Q ss_pred hHHHHHHHHHHHHhhc-CCCceEEe
Q psy6206 58 GSEANDLALRLARVHT-NNDDVITQ 81 (83)
Q Consensus 58 GseA~e~Alk~ar~~~-~r~~ii~~ 81 (83)
=.++++++++..+... +++.|+.|
T Consensus 23 Np~s~~a~l~~l~~~~~~~~~i~V~ 47 (91)
T PF02875_consen 23 NPDSIRALLEALKELYPKGRIIAVF 47 (91)
T ss_dssp SHHHHHHHHHHHHHHCTTSEEEEEE
T ss_pred CHHHHHHHHHHHHHhccCCcEEEEE
Confidence 4567777888776663 34444443
No 445
>PRK08636 aspartate aminotransferase; Provisional
Probab=24.49 E-value=2.4e+02 Score=19.38 Aligned_cols=36 Identities=3% Similarity=-0.232 Sum_probs=24.4
Q ss_pred HHHHHHHHHHhhCC--CCCC-eEEeeCChHHHHHHHHHH
Q psy6206 33 NLVLCARKLASLLP--DPLS-VCFFVNSGSEANDLALRL 68 (83)
Q Consensus 33 ~~~~la~~l~~~~p--~~~~-~v~f~~sGseA~e~Alk~ 68 (83)
....+++.+.+..+ ...+ .|+.++++.++...+++.
T Consensus 76 lR~~ia~~l~~~~~~~~~~~~~I~it~G~~~al~~~~~~ 114 (403)
T PRK08636 76 LRLAICNWYKRKYNVDLDPETEVVATMGSKEGYVHLVQA 114 (403)
T ss_pred HHHHHHHHHHHHhCCCCCCCCeEEECCChHHHHHHHHHH
Confidence 34556666654322 2344 699999999999988874
No 446
>COG2118 DNA-binding protein [General function prediction only]
Probab=24.46 E-value=1.2e+02 Score=17.86 Aligned_cols=21 Identities=24% Similarity=0.292 Sum_probs=15.5
Q ss_pred CCCHHHHHHHHHHHHhhccCC
Q psy6206 7 HCHPAVVKAACTQLALLNTNN 27 (83)
Q Consensus 7 h~~p~i~~a~~~~~~~~~~~~ 27 (83)
-..|++.+++..|+-.+...+
T Consensus 63 LvRPe~AeavE~qLi~LaqtG 83 (116)
T COG2118 63 LVRPELAEAVENQLIQLAQTG 83 (116)
T ss_pred hcCHHHHHHHHHHHHHHHHcC
Confidence 357899999999888874333
No 447
>KOG3802|consensus
Probab=24.02 E-value=2e+02 Score=20.65 Aligned_cols=23 Identities=22% Similarity=0.364 Sum_probs=13.8
Q ss_pred hHHHHHHHHHHhhCCCCCCeEEeeC
Q psy6206 32 DNLVLCARKLASLLPDPLSVCFFVN 56 (83)
Q Consensus 32 ~~~~~la~~l~~~~p~~~~~v~f~~ 56 (83)
+.+..+|+.|. +..+.-||||||
T Consensus 322 qEIt~iA~~L~--leKEVVRVWFCN 344 (398)
T KOG3802|consen 322 QEITHIAESLQ--LEKEVVRVWFCN 344 (398)
T ss_pred HHHHHHHHHhc--cccceEEEEeec
Confidence 44556666653 122445999997
No 448
>COG1670 RimL Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis]
Probab=23.98 E-value=1.2e+02 Score=17.60 Aligned_cols=23 Identities=17% Similarity=-0.021 Sum_probs=16.7
Q ss_pred ChHHHHHHHHHHHHhhcCCCceE
Q psy6206 57 SGSEANDLALRLARVHTNNDDVI 79 (83)
Q Consensus 57 sGseA~e~Alk~ar~~~~r~~ii 79 (83)
-|+||+...++.++..-+-++|.
T Consensus 112 ~~tea~~~~l~~~f~~~~l~ri~ 134 (187)
T COG1670 112 YATEALRALLDYAFEELGLHRIE 134 (187)
T ss_pred hHHHHHHHHHHHhhhhcCceEEE
Confidence 47899999999888755544443
No 449
>PF09268 Clathrin-link: Clathrin, heavy-chain linker; InterPro: IPR015348 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the core motif for the alpha-helical zigzag linker region connecting the conserved N-terminal beta-propeller region to the C-terminal alpha-alpha-superhelical region in clathrin heavy chains []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030130 clathrin coat of trans-Golgi network vesicle, 0030132 clathrin coat of coated pit; PDB: 1C9I_A 1BPO_B 1C9L_A 1UTC_B 3GD1_I 3GC3_B 2XZG_A 2XZH_A.
Probab=23.95 E-value=75 Score=13.35 Aligned_cols=7 Identities=100% Similarity=1.246 Sum_probs=3.0
Q ss_pred HHHHHHH
Q psy6206 63 DLALRLA 69 (83)
Q Consensus 63 e~Alk~a 69 (83)
|.|+|+|
T Consensus 16 ~LAl~lA 22 (24)
T PF09268_consen 16 DLALRLA 22 (24)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 3444443
No 450
>KOG1383|consensus
Probab=23.95 E-value=3e+02 Score=20.34 Aligned_cols=64 Identities=20% Similarity=0.236 Sum_probs=38.2
Q ss_pred CHHHHHHHHHHHHhh-c-cCCCCc--chHHHHHHHHHHhhCCCCCCeE-EeeCChHHHHHHHHHHHHhh
Q psy6206 9 HPAVVKAACTQLALL-N-TNNRFL--HDNLVLCARKLASLLPDPLSVC-FFVNSGSEANDLALRLARVH 72 (83)
Q Consensus 9 ~p~i~~a~~~~~~~~-~-~~~~~~--~~~~~~la~~l~~~~p~~~~~v-~f~~sGseA~e~Alk~ar~~ 72 (83)
+|+..+-+.+.++++ + ....++ .....++...++.++.+..+.+ .-+..||||...|-|.-|..
T Consensus 93 ~~~~~~l~~~~~~k~N~l~~d~fp~~~~~e~~~Vnm~~~L~~~~~~~~g~~t~G~Ses~l~~~k~~~~~ 161 (491)
T KOG1383|consen 93 EPELDKLIMEAYNKFNPLHPDEFPVVRKLEAECVNMIANLFNAPSDSCGCGTVGGSESGLAAKKSYRNR 161 (491)
T ss_pred CcchhhHHHHHHhhcCccCccccchhHHHHHHHHHHHHHHhcCCccccCccccccchHHHHHHHHHHHH
Confidence 566666666666653 1 112233 3455677788888875443322 33467999988888855433
No 451
>KOG1395|consensus
Probab=23.93 E-value=92 Score=22.38 Aligned_cols=49 Identities=16% Similarity=0.219 Sum_probs=32.8
Q ss_pred HHHHHHHHHHhhCCCCCCeEEe-----eCChHHHHHHHHHHHHhh--cCCCceEEec
Q psy6206 33 NLVLCARKLASLLPDPLSVCFF-----VNSGSEANDLALRLARVH--TNNDDVITQD 82 (83)
Q Consensus 33 ~~~~la~~l~~~~p~~~~~v~f-----~~sGseA~e~Alk~ar~~--~~r~~ii~~~ 82 (83)
-....|++|.+.... ..++|| ..+||--+.+|+--+... -|+++||+=.
T Consensus 123 spL~~AkRLte~~q~-ga~IylKrEdlnh~GsHKiNnav~QallakrlGkknviaET 178 (477)
T KOG1395|consen 123 SPLIRAKRLTEHCQT-GARIYLKREDLNHTGSHKINNAVAQALLAKRLGKKNVIAET 178 (477)
T ss_pred chhHHHHHHHHHhCC-CCEEEEEecCCCccccCCcccHHHHHHHHHHhcccceeecc
Confidence 345678888887642 235665 468999999988754433 3788888743
No 452
>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=23.74 E-value=66 Score=21.53 Aligned_cols=24 Identities=21% Similarity=0.260 Sum_probs=17.3
Q ss_pred ChHHHHHHHHHHHHhhcCCCceEEe
Q psy6206 57 SGSEANDLALRLARVHTNNDDVITQ 81 (83)
Q Consensus 57 sGseA~e~Alk~ar~~~~r~~ii~~ 81 (83)
-|..=++.|+|.||+... ++|++|
T Consensus 231 ~g~~h~d~AvksaRaaRk-kki~c~ 254 (280)
T COG5074 231 QGVGHTDKAVKSARAARK-KKIRCY 254 (280)
T ss_pred HhhhhHHHHHHHHHHHHh-cceehh
Confidence 355668899999998754 466655
No 453
>PLN02827 Alcohol dehydrogenase-like
Probab=23.46 E-value=2.5e+02 Score=19.20 Aligned_cols=38 Identities=11% Similarity=-0.024 Sum_probs=22.6
Q ss_pred HHHHHHhhCCCCCCeEEeeCChH-HHHHHHHHHHHhhcCC
Q psy6206 37 CARKLASLLPDPLSVCFFVNSGS-EANDLALRLARVHTNN 75 (83)
Q Consensus 37 la~~l~~~~p~~~~~v~f~~sGs-eA~e~Alk~ar~~~~r 75 (83)
+.+.+.+.++.+.+ +.+-.+|+ .+.+.++++.|...|+
T Consensus 252 ~~~~v~~~~~~g~d-~vid~~G~~~~~~~~l~~l~~g~G~ 290 (378)
T PLN02827 252 IQQVIKRMTGGGAD-YSFECVGDTGIATTALQSCSDGWGL 290 (378)
T ss_pred HHHHHHHHhCCCCC-EEEECCCChHHHHHHHHhhccCCCE
Confidence 33444455544454 55566665 5789999988764343
No 454
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=22.97 E-value=2.7e+02 Score=19.32 Aligned_cols=46 Identities=15% Similarity=0.239 Sum_probs=25.6
Q ss_pred HHHHHHHHhhCC-CCCCeEEeeCChHHHHHHHHHHHHhhcCCCceEEec
Q psy6206 35 VLCARKLASLLP-DPLSVCFFVNSGSEANDLALRLARVHTNNDDVITQD 82 (83)
Q Consensus 35 ~~la~~l~~~~p-~~~~~v~f~~sGseA~e~Alk~ar~~~~r~~ii~~~ 82 (83)
..+.+.+.+..+ .+..-|+++.+|..+..++..+.+. |-+++..++
T Consensus 43 ~~l~~~~~~~~~~~~~~IvvyC~~G~rs~~aa~~L~~~--G~~~v~~l~ 89 (376)
T PRK08762 43 GFLELRIETHLPDRDREIVLICASGTRSAHAAATLREL--GYTRVASVA 89 (376)
T ss_pred HHHHHHHhhhcCCCCCeEEEEcCCCcHHHHHHHHHHHc--CCCceEeec
Confidence 345555555443 3334578888888777666554332 444555544
No 455
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=22.84 E-value=1.2e+02 Score=15.44 Aligned_cols=33 Identities=21% Similarity=0.267 Sum_probs=19.7
Q ss_pred CCCeEEeeCChHHHHHHHHHHHHhhcCCCceEEec
Q psy6206 48 PLSVCFFVNSGSEANDLALRLARVHTNNDDVITQD 82 (83)
Q Consensus 48 ~~~~v~f~~sGseA~e~Alk~ar~~~~r~~ii~~~ 82 (83)
+..-|+++.+|..+...+..+... |.+++..++
T Consensus 56 ~~~iv~~c~~g~~a~~~~~~l~~~--G~~~v~~l~ 88 (100)
T smart00450 56 DKPVVVYCRSGNRSAKAAWLLREL--GFKNVYLLD 88 (100)
T ss_pred CCeEEEEeCCCcHHHHHHHHHHHc--CCCceEEec
Confidence 344678888888886665554332 444455544
No 456
>TIGR00646 MG010 DNA primase-related protein. The DNA primase DnaG of E. coli and its apparent orthologs in other eubacterial species are approximately 600 residues in length. Within this set, a conspicuous outlier in percent identity, as seen in a UPGMA difference tree, is the branch containing the Mycoplasmas. This lineage is also unique in containing the small, DNA primase-related protein modelled by this alignment, which is homologous to the central third of DNA primase. Several small regions of sequence similarity specifically to Mycoplasma sequences rather than to all DnaG homologs suggests that the divergence of this protein from DnaG post-dated the separation of bacterial lineages. The function of this DNA primase-related protein is unknown.
Probab=22.79 E-value=2e+02 Score=18.80 Aligned_cols=6 Identities=17% Similarity=0.302 Sum_probs=2.9
Q ss_pred CeEEee
Q psy6206 50 SVCFFV 55 (83)
Q Consensus 50 ~~v~f~ 55 (83)
++|.++
T Consensus 155 ~~Iil~ 160 (218)
T TIGR00646 155 EKIFIC 160 (218)
T ss_pred CEEEEE
Confidence 345444
No 457
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=22.78 E-value=81 Score=13.30 Aligned_cols=19 Identities=26% Similarity=0.329 Sum_probs=11.9
Q ss_pred CCCCCHHHHHHHHHHHHhh
Q psy6206 5 VGHCHPAVVKAACTQLALL 23 (83)
Q Consensus 5 lGh~~p~i~~a~~~~~~~~ 23 (83)
+.+.+|+|+++..+.+..+
T Consensus 9 l~D~~~~VR~~a~~~l~~i 27 (31)
T PF02985_consen 9 LNDPSPEVRQAAAECLGAI 27 (31)
T ss_dssp HT-SSHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHH
Confidence 3456777877777766553
No 458
>PHA02947 S-S bond formation pathway protein; Provisional
Probab=22.65 E-value=1.1e+02 Score=20.10 Aligned_cols=20 Identities=30% Similarity=0.302 Sum_probs=16.1
Q ss_pred eEEeeCChHHHHHHHHHHHH
Q psy6206 51 VCFFVNSGSEANDLALRLAR 70 (83)
Q Consensus 51 ~v~f~~sGseA~e~Alk~ar 70 (83)
.+.|.||||.+-.-+||...
T Consensus 137 ~~qfINSGsA~aNCgl~~I~ 156 (215)
T PHA02947 137 LLQIVNSGSAEANCGLNTIV 156 (215)
T ss_pred EEEEEecCchHhhhhHHHHH
Confidence 45699999999999999443
No 459
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=22.65 E-value=2.5e+02 Score=18.93 Aligned_cols=38 Identities=8% Similarity=0.083 Sum_probs=21.4
Q ss_pred HHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhhcCC
Q psy6206 38 ARKLASLLPDPLSVCFFVNSGSEANDLALRLARVHTNN 75 (83)
Q Consensus 38 a~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~~~r 75 (83)
.+.+.+.++.+.+.++=+.++..+.+.+++..+...|+
T Consensus 244 ~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~ 281 (365)
T cd08277 244 SEVIREMTGGGVDYSFECTGNADLMNEALESTKLGWGV 281 (365)
T ss_pred HHHHHHHhCCCCCEEEECCCChHHHHHHHHhcccCCCE
Confidence 34444444444555554445467778888876553333
No 460
>PF04634 DUF600: Protein of unknown function, DUF600; InterPro: IPR006728 This conserved region is found in several uncharacterised proteins from Gram-positive bacteria.; PDB: 2IA1_B 3I0T_A.
Probab=22.65 E-value=75 Score=19.14 Aligned_cols=22 Identities=9% Similarity=0.264 Sum_probs=13.8
Q ss_pred HHHHHHHHHHhhCCCCCCeEEe
Q psy6206 33 NLVLCARKLASLLPDPLSVCFF 54 (83)
Q Consensus 33 ~~~~la~~l~~~~p~~~~~v~f 54 (83)
...++|+.|.++.|.+.++|++
T Consensus 4 lY~~Ia~~i~~miP~eW~kiyl 25 (147)
T PF04634_consen 4 LYNEIANQINDMIPEEWEKIYL 25 (147)
T ss_dssp HHHHHHHHHHHH--S-EEEEEE
T ss_pred HHHHHHHHHHHhCchhhheEEE
Confidence 4567889999999976666544
No 461
>COG1801 Uncharacterized conserved protein [Function unknown]
Probab=21.90 E-value=2.6e+02 Score=18.70 Aligned_cols=44 Identities=23% Similarity=0.215 Sum_probs=29.8
Q ss_pred CcchHHHHHHHHHHhhCCC-CCCeEEeeC-ChHHHHHHHHHHHHhh
Q psy6206 29 FLHDNLVLCARKLASLLPD-PLSVCFFVN-SGSEANDLALRLARVH 72 (83)
Q Consensus 29 ~~~~~~~~la~~l~~~~p~-~~~~v~f~~-sGseA~e~Alk~ar~~ 72 (83)
+..+...+++++|.+.... ....|+|.| .+..|..+|+++....
T Consensus 201 Y~~~eL~~~a~ki~~~~~~~~~~yv~FnN~~~g~a~~na~~l~~~l 246 (263)
T COG1801 201 YNEEELKEWAEKIKQLAEGGKEVYVFFNNPYNGDAALNAKQLKELL 246 (263)
T ss_pred CCHHHHHHHHHHHHHHhcCCCceEEEEeCCcchhhHHHHHHHHHHh
Confidence 3345668899999876543 345788876 5777777887766543
No 462
>cd01521 RHOD_PspE2 Member of the Rhodanese Homology Domain superfamily. This CD includes the putative rhodanese-like protein, Psp2, of Yersinia pestis biovar Medievalis and other similar uncharacterized proteins.
Probab=21.88 E-value=1.6e+02 Score=16.21 Aligned_cols=35 Identities=20% Similarity=0.172 Sum_probs=19.9
Q ss_pred CCCCCCeEEeeCChH--HHHHHHHHHHHhhcCCCceEEec
Q psy6206 45 LPDPLSVCFFVNSGS--EANDLALRLARVHTNNDDVITQD 82 (83)
Q Consensus 45 ~p~~~~~v~f~~sGs--eA~e~Alk~ar~~~~r~~ii~~~ 82 (83)
.+.+..-|++|++|. .+...+.++.+. |-+ +..++
T Consensus 61 i~~~~~vvvyc~~g~~~~s~~~a~~l~~~--G~~-v~~l~ 97 (110)
T cd01521 61 LDKEKLFVVYCDGPGCNGATKAALKLAEL--GFP-VKEMI 97 (110)
T ss_pred CCCCCeEEEEECCCCCchHHHHHHHHHHc--CCe-EEEec
Confidence 444445677888875 566666666443 443 44444
No 463
>cd00411 Asparaginase Asparaginase (amidohydrolase): Asparaginases are tetrameric enzymes that catalyze the hydrolysis of asparagine to aspartic acid and ammonia. In bacteria, there are two classes of amidohydrolases, one highly specific for asparagine and localised to the periplasm, and a second (asparaginase- glutaminase) present in the cytosol that hydrolyzises both asparagine and glutamine with similar specificities.
Probab=21.86 E-value=2.7e+02 Score=19.00 Aligned_cols=51 Identities=14% Similarity=0.042 Sum_probs=24.1
Q ss_pred chHHHHHHHHHHhhCCCCCCeEEeeCC-------hHHH---HHHHHHHHHhhc--CCCceEEec
Q psy6206 31 HDNLVLCARKLASLLPDPLSVCFFVNS-------GSEA---NDLALRLARVHT--NNDDVITQD 82 (83)
Q Consensus 31 ~~~~~~la~~l~~~~p~~~~~v~f~~s-------GseA---~e~Alk~ar~~~--~r~~ii~~~ 82 (83)
++.+++.+-.|.-.+.. ...|.|+-+ ++++ ...|+++|.... ++--.|+|.
T Consensus 88 TDTmeeTA~~L~~~l~~-~kPVVlTGA~rp~~~~~sDg~~NL~~Al~~A~~~~~~~~gV~V~f~ 150 (323)
T cd00411 88 TDTMEETAYFLSLTLEN-DKPVVLTGSMRPSTELSADGPLNLYNAVYVAANYDSRGRGVLVVFN 150 (323)
T ss_pred cccHHHHHHHHHHHhcC-CCCEEEECCCCCCCCcCcchHHHHHHHHHHHcCcccCCCeEEEEEC
Confidence 34455555444433333 334555532 5555 455666654332 334455554
No 464
>PLN02607 1-aminocyclopropane-1-carboxylate synthase
Probab=21.80 E-value=2e+02 Score=20.45 Aligned_cols=36 Identities=11% Similarity=-0.027 Sum_probs=24.9
Q ss_pred HHHHHHHHHHhhC----CCCCCeEEeeCChHHHHHHHHHH
Q psy6206 33 NLVLCARKLASLL----PDPLSVCFFVNSGSEANDLALRL 68 (83)
Q Consensus 33 ~~~~la~~l~~~~----p~~~~~v~f~~sGseA~e~Alk~ 68 (83)
....+++.+.+.. |-+.++++.++++++|++..+..
T Consensus 100 LR~aiA~~l~~~~~~~~~v~p~~Ivit~G~t~al~~l~~~ 139 (447)
T PLN02607 100 FRQAMASFMEQIRGGKARFDPDRIVLTAGATAANELLTFI 139 (447)
T ss_pred HHHHHHHHHHHhcCCCCCcCHHHeEEcCChHHHHHHHHHH
Confidence 3355666666543 23456899999999999987653
No 465
>TIGR02810 agaZ_gatZ D-tagatose-bisphosphate aldolase, class II, non-catalytic subunit. Aldolases specific for D-tagatose-bisphosphate occur in distinct pathways in Escherichia coli and other bacteria, one for the degradation of galactitol (formerly dulcitol) and one for degradation of N-acetyl-galactosamine and D-galactosamine. This family represents a protein of both systems that behaves as a non-catalytic subunit of D-tagatose-bisphosphate aldolase, required both for full activity and for good stability of the aldolase. Note that members of this protein family appear in public databases annotated as putative tagatose 6-phosphate kinases, possibly in error.
Probab=21.79 E-value=3.2e+02 Score=19.82 Aligned_cols=70 Identities=17% Similarity=0.111 Sum_probs=40.7
Q ss_pred cCCCCCCHHHHHHHHHHHHhh-------c------cCCCC---cchHHHHHHHHHHhhCCCCCCeEEe-----------e
Q psy6206 3 LPVGHCHPAVVKAACTQLALL-------N------TNNRF---LHDNLVLCARKLASLLPDPLSVCFF-----------V 55 (83)
Q Consensus 3 ~~lGh~~p~i~~a~~~~~~~~-------~------~~~~~---~~~~~~~la~~l~~~~p~~~~~v~f-----------~ 55 (83)
.+++-.||-|++|..++.... . ..++| .......+.+.+.+...-+.+++++ -
T Consensus 16 ~sVCsahp~VieAAl~~a~~~~~pvLiEAT~NQVnq~GGYTGmtP~dF~~~V~~iA~~~gf~~~~iiLggDHlGPn~Wq~ 95 (420)
T TIGR02810 16 YSVCSAHPLVLEAAIRRARASGTPVLIEATSNQVNQFGGYTGMTPADFRDFVETIADRIGFPRDRLILGGDHLGPNPWQH 95 (420)
T ss_pred EEECCCCHHHHHHHHHHHhhcCCcEEEEeccccccccCCcCCCCHHHHHHHHHHHHHHcCCChhcEEeecCCCCCccccC
Confidence 356778999999965555441 0 11222 2333455666665554322223333 3
Q ss_pred CChHHHHHHHHHHHHhh
Q psy6206 56 NSGSEANDLALRLARVH 72 (83)
Q Consensus 56 ~sGseA~e~Alk~ar~~ 72 (83)
-+-.||++.|-++.+.|
T Consensus 96 lpa~eAM~~A~~li~ay 112 (420)
T TIGR02810 96 LPADEAMAKAAALVDAY 112 (420)
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 36789999999988876
No 466
>PF04881 Adeno_GP19K: Adenovirus GP19K; InterPro: IPR006965 This 19 kDa glycoprotein binds the major histocompatibility (MHC) class I antigens in the endoplasmic reticulum (ER). The ER retention signal at the C terminus of Gp19K causes retention of the complex in the ER, preventing lysis of the cell by cytotoxic T-lymphocytes [].; GO: 0005537 mannose binding, 0050690 regulation of defense response to virus by virus
Probab=21.77 E-value=1e+02 Score=18.57 Aligned_cols=24 Identities=8% Similarity=0.250 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHhhc----CCCceEEec
Q psy6206 59 SEANDLALRLARVHT----NNDDVITQD 82 (83)
Q Consensus 59 seA~e~Alk~ar~~~----~r~~ii~~~ 82 (83)
++-.+.+|-++|+|. .|++++.|.
T Consensus 75 ~~mCDitm~mskqy~LWPPtkeN~V~fS 102 (139)
T PF04881_consen 75 YEMCDITMFMSKQYGLWPPTKENIVGFS 102 (139)
T ss_pred HHHHHHHHHHHHHhCcCCCcccceeeee
Confidence 567788888999873 467777764
No 467
>PF00885 DMRL_synthase: 6,7-dimethyl-8-ribityllumazine synthase; InterPro: IPR002180 6,7-dimethyl-8-ribityllumazine synthase (riboflavin synthase) catalyses the biosynthesis of riboflavin according to the reaction: 2 6,7-dimethyl-8-(1-D-ribityl)lumazine = riboflavin + 4-(1-D-ribitylamino)-5-amino-2,6-dihydroxypyrimidine. The biosynthesis of one riboflavin molecule requires one molecule of GTP and two molecules of ribulose 5-phosphate as substrates. The final step in the biosynthesis of the vitamin involves the dismutation of 6,7-dimethyl-8-ribityllumazine catalyzed by riboflavin synthase. The second product, 5-amino-6-ribitylamino-2,4(1H,3H)-pyrimidinedione, is recycled in the biosynthetic pathway by 6,7-dimethyl-8-ribityllumazine synthase []. N-[2,4-dioxo-6-d-ribitylamino-1,2,3,4-tetrahydropyrimidin-5-yl]oxalamic acid derivatives inhibit riboflavin synthase []. This family includes the beta chain of 6,7-dimethyl-8-ribityllumazine synthase 2.5.1.9 from EC. The family also includes a subfamily of distant archaebacterial proteins that may also have the same function for example O28856 from SWISSPROT.; GO: 0009231 riboflavin biosynthetic process, 0009349 riboflavin synthase complex; PDB: 2O6H_D 1C41_C 2OBX_H 1VSX_H 1VSW_3 3JV8_C 3MK3_r 3NQ4_G 2A58_A 2A57_D ....
Probab=21.77 E-value=93 Score=18.77 Aligned_cols=17 Identities=41% Similarity=0.630 Sum_probs=13.8
Q ss_pred CChHHHHHHHHHHHHhh
Q psy6206 56 NSGSEANDLALRLARVH 72 (83)
Q Consensus 56 ~sGseA~e~Alk~ar~~ 72 (83)
+=|.||.++|+++++..
T Consensus 125 nkG~eaA~aal~m~~l~ 141 (144)
T PF00885_consen 125 NKGREAAEAALEMAKLL 141 (144)
T ss_dssp EHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHH
Confidence 55899999999988653
No 468
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=21.67 E-value=2.9e+02 Score=19.35 Aligned_cols=37 Identities=14% Similarity=0.353 Sum_probs=24.0
Q ss_pred CCCCCCeEEeeCChHHHHHHHHHHHHhhcCCCceEEecC
Q psy6206 45 LPDPLSVCFFVNSGSEANDLALRLARVHTNNDDVITQDQ 83 (83)
Q Consensus 45 ~p~~~~~v~f~~sGseA~e~Alk~ar~~~~r~~ii~~~~ 83 (83)
++.+-.-|++|.+|..|..+|..+.+. |-+++..++|
T Consensus 340 l~~d~~iVvyC~~G~rS~~aa~~L~~~--G~~~V~~L~G 376 (392)
T PRK07878 340 LPQDRTIVLYCKTGVRSAEALAALKKA--GFSDAVHLQG 376 (392)
T ss_pred CCCCCcEEEEcCCChHHHHHHHHHHHc--CCCcEEEecC
Confidence 344445678889999998887777654 4444555443
No 469
>PRK15399 lysine decarboxylase LdcC; Provisional
Probab=21.57 E-value=3.4e+02 Score=21.10 Aligned_cols=41 Identities=7% Similarity=0.152 Sum_probs=22.4
Q ss_pred HHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhhcCC
Q psy6206 33 NLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVHTNN 75 (83)
Q Consensus 33 ~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~~~r 75 (83)
+..+.-+...++. +.++.||...||-.-..++-+|-.-.|.
T Consensus 196 ~i~eAe~~aA~~f--gAd~tyfvvNGTS~~n~av~~a~~~~Gd 236 (713)
T PRK15399 196 PHLEAEEYIARTF--GAEQSYIVTNGTSTSNKIVGMYAAPAGS 236 (713)
T ss_pred HHHHHHHHHHHHh--CCCcEEEEeCChHHHHHHHHHHhcCCCC
Confidence 3334444444555 4578999988866544444444333343
No 470
>PRK00414 gmhA phosphoheptose isomerase; Reviewed
Probab=21.38 E-value=2.2e+02 Score=17.75 Aligned_cols=29 Identities=31% Similarity=0.169 Sum_probs=17.9
Q ss_pred eEEeeCCh-HHHHHHHHHHHHhhcCCCceEEe
Q psy6206 51 VCFFVNSG-SEANDLALRLARVHTNNDDVITQ 81 (83)
Q Consensus 51 ~v~f~~sG-seA~e~Alk~ar~~~~r~~ii~~ 81 (83)
-+.+..|| ++.+-.+++.|+...- ++|++
T Consensus 115 ~I~iS~SG~t~~~i~~~~~ak~~g~--~iI~i 144 (192)
T PRK00414 115 LLGISTSGNSGNIIKAIEAARAKGM--KVITL 144 (192)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHCCC--eEEEE
Confidence 44566666 5667777888877633 34444
No 471
>PRK15400 lysine decarboxylase CadA; Provisional
Probab=21.17 E-value=3.6e+02 Score=20.98 Aligned_cols=37 Identities=8% Similarity=0.160 Sum_probs=20.9
Q ss_pred HHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHh
Q psy6206 33 NLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARV 71 (83)
Q Consensus 33 ~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~ 71 (83)
+..+.-+...++. +.++.||...||-+-..++-++-.
T Consensus 196 ~i~eAe~~AA~~f--gAd~tyfvvNGTS~~n~av~~a~~ 232 (714)
T PRK15400 196 PHKEAEEYIARVF--NADRSYMVTNGTSTANKIVGMYSA 232 (714)
T ss_pred HHHHHHHHHHHHh--CCCcEEEEeCchHHHHHHHHHHhc
Confidence 3333333444555 457899998886654444444433
No 472
>COG4015 Predicted dinucleotide-utilizing enzyme of the ThiF/HesA family [General function prediction only]
Probab=20.99 E-value=2.3e+02 Score=18.15 Aligned_cols=34 Identities=21% Similarity=0.282 Sum_probs=28.4
Q ss_pred CeEEeeCChHHHHHHHHHHHHhhc-CCCceEEecC
Q psy6206 50 SVCFFVNSGSEANDLALRLARVHT-NNDDVITQDQ 83 (83)
Q Consensus 50 ~~v~f~~sGseA~e~Alk~ar~~~-~r~~ii~~~~ 83 (83)
..|.++.+|.-.+..|+.+..... |-.+|.+|+|
T Consensus 19 GeV~l~G~GRLG~Rval~Lle~HRGGperi~v~Dg 53 (217)
T COG4015 19 GEVSLIGCGRLGVRVALDLLEVHRGGPERIYVFDG 53 (217)
T ss_pred ceEEEEeccchhHHHHHHHHHHhcCCCeEEEEecC
Confidence 478999999999999999887765 5678888876
No 473
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=20.93 E-value=2.4e+02 Score=19.03 Aligned_cols=40 Identities=13% Similarity=0.116 Sum_probs=29.8
Q ss_pred chHHHHHHHHHHhhCCCCCCeE-EeeCChHHHHHHHHHHHHhhc
Q psy6206 31 HDNLVLCARKLASLLPDPLSVC-FFVNSGSEANDLALRLARVHT 73 (83)
Q Consensus 31 ~~~~~~la~~l~~~~p~~~~~v-~f~~sGseA~e~Alk~ar~~~ 73 (83)
.+...++.+...+...+ ++ .....|+.+++-|+++++.+.
T Consensus 56 ~eEr~~v~~~~v~~~~g---rvpviaG~g~~~t~eai~lak~a~ 96 (299)
T COG0329 56 LEERKEVLEAVVEAVGG---RVPVIAGVGSNSTAEAIELAKHAE 96 (299)
T ss_pred HHHHHHHHHHHHHHHCC---CCcEEEecCCCcHHHHHHHHHHHH
Confidence 45567777888887754 33 667788888999999988764
No 474
>COG0279 GmhA Phosphoheptose isomerase [Carbohydrate transport and metabolism]
Probab=20.92 E-value=1.5e+02 Score=18.79 Aligned_cols=31 Identities=23% Similarity=0.221 Sum_probs=18.4
Q ss_pred chHHHHHHHHHHhhCCCCCCeEE-eeCChHHHH
Q psy6206 31 HDNLVLCARKLASLLPDPLSVCF-FVNSGSEAN 62 (83)
Q Consensus 31 ~~~~~~la~~l~~~~p~~~~~v~-f~~sGseA~ 62 (83)
.+.....++.+++.+-.+ .+|+ +.|+||.|.
T Consensus 24 ~~~I~~aa~~i~~~l~~G-~Kvl~cGNGgSaad 55 (176)
T COG0279 24 IEAIERAAQLLVQSLLNG-NKVLACGNGGSAAD 55 (176)
T ss_pred HHHHHHHHHHHHHHHHcC-CEEEEECCCcchhh
Confidence 455667777777766443 3554 446666553
No 475
>PRK13781 paaB phenylacetate-CoA oxygenase subunit PaaB; Provisional
Probab=20.85 E-value=97 Score=17.62 Aligned_cols=16 Identities=38% Similarity=0.491 Sum_probs=10.4
Q ss_pred HHHHHHHHHhh-cCCCc
Q psy6206 62 NDLALRLARVH-TNNDD 77 (83)
Q Consensus 62 ~e~Alk~ar~~-~~r~~ 77 (83)
-|.|+..||.. +.|+.
T Consensus 32 ~e~Al~~Ar~~y~RR~e 48 (95)
T PRK13781 32 AEMALRNARDVYTRRNE 48 (95)
T ss_pred HHHHHHHHHHHhccccC
Confidence 47888888854 44433
No 476
>PF05965 FYRC: F/Y rich C-terminus; InterPro: IPR003889 The "FY-rich" domain C-terminal region is sometimes closely juxtaposed with the N-terminal region (IPR003888 from INTERPRO), but sometimes is far distant. It is of unknown function, but occurs frequently in chromatin-associated proteins like trithorax and its homologues.; GO: 0005634 nucleus; PDB: 2WZO_A.
Probab=20.47 E-value=46 Score=17.93 Aligned_cols=13 Identities=31% Similarity=0.419 Sum_probs=9.7
Q ss_pred CCCCCCHHHHHHH
Q psy6206 4 PVGHCHPAVVKAA 16 (83)
Q Consensus 4 ~lGh~~p~i~~a~ 16 (83)
.||-.+|.|...+
T Consensus 56 ~FGls~p~V~~li 68 (86)
T PF05965_consen 56 MFGLSNPAVQRLI 68 (86)
T ss_dssp HHSTTSHHHHHHH
T ss_pred hcCCCCHHHHHHH
Confidence 4788888777665
No 477
>PF11195 DUF2829: Protein of unknown function (DUF2829) ; InterPro: IPR021361 This entry is represented by Bacteriophage 16-3, p046. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=20.40 E-value=64 Score=17.19 Aligned_cols=9 Identities=44% Similarity=0.505 Sum_probs=6.1
Q ss_pred HHHHHHHHHH
Q psy6206 59 SEANDLALRL 68 (83)
Q Consensus 59 seA~e~Alk~ 68 (83)
.||++ |||.
T Consensus 4 ~eAl~-alK~ 12 (75)
T PF11195_consen 4 GEALE-ALKQ 12 (75)
T ss_pred HHHHH-HHHc
Confidence 47777 7773
No 478
>PF12471 GTP_CH_N: GTP cyclohydrolase N terminal ; InterPro: IPR022163 This domain family is found in bacteria and eukaryotes, and is approximately 190 amino acids in length. This family is the N-terminal of GTP cyclohydrolase, the rate limiting enzyme in the synthesis of tetrahydrobiopterin.
Probab=20.30 E-value=1.3e+02 Score=19.28 Aligned_cols=20 Identities=30% Similarity=0.125 Sum_probs=15.0
Q ss_pred eEEeeCChHHHHHHHHHHHH
Q psy6206 51 VCFFVNSGSEANDLALRLAR 70 (83)
Q Consensus 51 ~v~f~~sGseA~e~Alk~ar 70 (83)
.+.=+.+||-++-.||-+|-
T Consensus 46 NaIGaH~GSYsvYrALAVAs 65 (194)
T PF12471_consen 46 NAIGAHSGSYSVYRALAVAS 65 (194)
T ss_pred eeecccCcchHHHHHHHHHh
Confidence 45556788888888888774
No 479
>cd03137 GATase1_AraC_1 AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. A subgroup of AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=20.12 E-value=1.5e+02 Score=17.91 Aligned_cols=26 Identities=19% Similarity=0.188 Sum_probs=20.4
Q ss_pred CeEEeeCChHHHHHHHHHHHHhhcCC
Q psy6206 50 SVCFFVNSGSEANDLALRLARVHTNN 75 (83)
Q Consensus 50 ~~v~f~~sGseA~e~Alk~ar~~~~r 75 (83)
++++-+.++..+.|.++.+.++..|+
T Consensus 149 g~i~Ta~g~~~~~d~~l~li~~~~g~ 174 (187)
T cd03137 149 GNVWTSAGVTAGIDLCLHLVREDLGA 174 (187)
T ss_pred CCEEEcccHHHHHHHHHHHHHHHhCH
Confidence 35666677779999999999887664
No 480
>PF00710 Asparaginase: Asparaginase; InterPro: IPR006034 Asparaginase, which is found in various plant, animal and bacterial cells, catalyses the deamination of asparagine to yield aspartic acid and an ammonium ion, resulting in a depletion of free circulatory asparagine in plasma []. The enzyme is effective in the treatment of human malignant lymphomas, which have a diminished capacity to produce asparagine synthetase: in order to survive, such cells absorb asparagine from blood plasma [, ] - if Asn levels have been depleted by injection of asparaginase, the lymphoma cells die. Glutaminase, a similar enzyme, catalyses the deaminination of glutamine to glutamic acid and an ammonium ion []. Both enzymes are homotetramers []: two threonine residues in the N-terminal half of the proteins are involved in the catalytic activity.; GO: 0006520 cellular amino acid metabolic process; PDB: 1HFW_C 1HG1_B 1JSL_C 1HFK_A 1JSR_C 1HFJ_C 1HG0_D 1O7J_A 1ZQ1_A 1JJA_D ....
Probab=20.05 E-value=2.9e+02 Score=18.69 Aligned_cols=53 Identities=17% Similarity=0.096 Sum_probs=25.4
Q ss_pred chHHHHHHHHHHhhCCCCCCeEEee----------CChHHHHHHHHHHHHhhcCCCceEEecC
Q psy6206 31 HDNLVLCARKLASLLPDPLSVCFFV----------NSGSEANDLALRLARVHTNNDDVITQDQ 83 (83)
Q Consensus 31 ~~~~~~la~~l~~~~p~~~~~v~f~----------~sGseA~e~Alk~ar~~~~r~~ii~~~~ 83 (83)
++.+.+.+-.|.-.+..-...|.|+ +-|..=...|+.+|....++--.|+|.|
T Consensus 82 TDTme~tA~~Ls~~l~~l~kPVVlTGa~~P~~~~~sDg~~NL~~Av~~A~~~~~~GV~v~f~~ 144 (313)
T PF00710_consen 82 TDTMEETAFFLSLLLDNLDKPVVLTGAMRPLSAPGSDGPRNLYDAVRVAASPAGPGVLVVFNG 144 (313)
T ss_dssp STTHHHHHHHHHHHEES-SSEEEEE--SS-TTSTT-SHHHHHHHHHHHHHSGGTSSEEEEETT
T ss_pred chHHHHHHHHHHHHhcCCCCCEEEeCCcCCCcCCCCccHHHHHHHHHHHhcccCCceEEEeCC
Confidence 3444454444444433212345555 2344445566666665445555555543
Done!