RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy6206
(83 letters)
>gnl|CDD|180426 PRK06148, PRK06148, hypothetical protein; Provisional.
Length = 1013
Score = 137 bits (348), Expect = 1e-39
Identities = 49/78 (62%), Positives = 54/78 (69%)
Query: 5 VGHCHPAVVKAACTQLALLNTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDL 64
VGH HP VV AA Q A LNTN R+LHD +V A +L + LPD L+V FFVNSGSEAN L
Sbjct: 636 VGHAHPRVVAAAARQAARLNTNTRYLHDAIVAYAERLTATLPDGLTVAFFVNSGSEANSL 695
Query: 65 ALRLARVHTNNDDVITQD 82
ALRLAR HT D I D
Sbjct: 696 ALRLARAHTGQRDAIVLD 713
>gnl|CDD|223238 COG0160, GabT, 4-aminobutyrate aminotransferase and related
aminotransferases [Amino acid transport and metabolism].
Length = 447
Score = 102 bits (256), Expect = 2e-27
Identities = 36/83 (43%), Positives = 48/83 (57%), Gaps = 3/83 (3%)
Query: 1 MSLPVGHCHPAVVKAACTQLALLN-TNNRFLH-DNLVLCARKLASLLPDP-LSVCFFVNS 57
L +GH HP VV+A QLA LN T+ R L+ + V A KL +L P L FF NS
Sbjct: 66 AVLNLGHNHPRVVEAVKRQLAKLNHTHTRDLYYEPYVELAEKLTALAPGSGLKKVFFGNS 125
Query: 58 GSEANDLALRLARVHTNNDDVIT 80
G+EA + A+++AR +T VI
Sbjct: 126 GAEAVEAAIKIARAYTGRPGVIA 148
>gnl|CDD|235716 PRK06149, PRK06149, hypothetical protein; Provisional.
Length = 972
Score = 100 bits (252), Expect = 1e-26
Identities = 37/76 (48%), Positives = 49/76 (64%)
Query: 4 PVGHCHPAVVKAACTQLALLNTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEAND 63
+GH HP + AA Q +LLNTN+RF + + + +LA+L PD L F VNSGSEAND
Sbjct: 596 VLGHGHPRLAAAAARQWSLLNTNSRFHYAAVAEFSERLAALAPDGLDTVFLVNSGSEAND 655
Query: 64 LALRLARVHTNNDDVI 79
LA+RLA + DV+
Sbjct: 656 LAIRLAWAASGRRDVV 671
>gnl|CDD|99735 cd00610, OAT_like, Acetyl ornithine aminotransferase family. This
family belongs to pyridoxal phosphate (PLP)-dependent
aspartate aminotransferase superfamily (fold I). The
major groups in this CD correspond to ornithine
aminotransferase, acetylornithine aminotransferase,
alanine-glyoxylate aminotransferase, dialkylglycine
decarboxylase, 4-aminobutyrate aminotransferase,
beta-alanine-pyruvate aminotransferase,
adenosylmethionine-8-amino-7-oxononanoate
aminotransferase, and glutamate-1-semialdehyde
2,1-aminomutase. All the enzymes belonging to this
family act on basic amino acids and their derivatives
are involved in transamination or decarboxylation.
Length = 413
Score = 98.8 bits (247), Expect = 2e-26
Identities = 34/82 (41%), Positives = 46/82 (56%), Gaps = 2/82 (2%)
Query: 1 MSLPVGHCHPAVVKAACTQLALLNT--NNRFLHDNLVLCARKLASLLPDPLSVCFFVNSG 58
L +GH HP VV+A QLA L F ++ V A L +L P+ L FFVNSG
Sbjct: 46 GVLNLGHNHPEVVEALKEQLAKLTHFSLGFFYNEPAVELAELLLALTPEGLDKVFFVNSG 105
Query: 59 SEANDLALRLARVHTNNDDVIT 80
+EA + AL+LAR +T +I+
Sbjct: 106 TEAVEAALKLARAYTGRKKIIS 127
>gnl|CDD|201078 pfam00202, Aminotran_3, Aminotransferase class-III.
Length = 338
Score = 74.6 bits (184), Expect = 1e-17
Identities = 32/74 (43%), Positives = 45/74 (60%), Gaps = 2/74 (2%)
Query: 1 MSLPVGHCHPAVVKAACTQLA-LLNTNNR-FLHDNLVLCARKLASLLPDPLSVCFFVNSG 58
+ +GHCHP +V+A Q L +T+ R F + + A KLA L P L FF+NSG
Sbjct: 26 AVVNLGHCHPKIVQAVKEQADKLTHTSFRAFTTEPALQLAEKLAQLTPGGLDRVFFMNSG 85
Query: 59 SEANDLALRLARVH 72
SEAN+ A++LAR +
Sbjct: 86 SEANETAIKLARQY 99
>gnl|CDD|223239 COG0161, BioA, Adenosylmethionine-8-amino-7-oxononanoate
aminotransferase [Coenzyme metabolism].
Length = 449
Score = 73.0 bits (180), Expect = 7e-17
Identities = 26/69 (37%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
Query: 5 VGHCHPAVVKAACTQLALLNTNNR--FLHDNLVLCARKLASLLP-DPLSVCFFVNSGSEA 61
GH P + +A QL L F H+ + A KLA L P L FF +SGSEA
Sbjct: 58 HGHGRPEIAEAIKKQLDKLPHVMFGGFTHEPAIELAEKLAELAPEGGLDHVFFTDSGSEA 117
Query: 62 NDLALRLAR 70
+ AL++A
Sbjct: 118 VETALKMAL 126
>gnl|CDD|227325 COG4992, ArgD, Ornithine/acetylornithine aminotransferase [Amino
acid transport and metabolism].
Length = 404
Score = 71.4 bits (176), Expect = 2e-16
Identities = 31/70 (44%), Positives = 42/70 (60%), Gaps = 2/70 (2%)
Query: 5 VGHCHPAVVKAACTQLA-LLNTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEAND 63
+GHCHPA+V+A Q L + +N F ++ A KL L P FF NSG+EAN+
Sbjct: 56 LGHCHPALVEALKEQAEKLWHVSNLFYNEPQAELAEKLVELSPF-ADRVFFCNSGAEANE 114
Query: 64 LALRLARVHT 73
AL+LAR +T
Sbjct: 115 AALKLARKYT 124
>gnl|CDD|235112 PRK03244, argD, acetylornithine aminotransferase; Provisional.
Length = 398
Score = 67.2 bits (165), Expect = 6e-15
Identities = 30/69 (43%), Positives = 40/69 (57%), Gaps = 2/69 (2%)
Query: 6 GHCHPAVVKAACTQLALL-NTNNRFLHDNLVLCARKLASLL-PDPLSVCFFVNSGSEAND 63
GH HPAVV+A QLA L + +N F + + A +L LL FF NSG+EAN+
Sbjct: 58 GHAHPAVVEAVTRQLATLGHVSNLFATEPQIALAERLVELLGAPEGGRVFFCNSGAEANE 117
Query: 64 LALRLARVH 72
A +LAR+
Sbjct: 118 AAFKLARLT 126
>gnl|CDD|235056 PRK02627, PRK02627, acetylornithine aminotransferase; Provisional.
Length = 396
Score = 66.3 bits (163), Expect = 1e-14
Identities = 28/72 (38%), Positives = 43/72 (59%), Gaps = 3/72 (4%)
Query: 5 VGHCHPAVVKAACTQLA-LLNTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEAND 63
+GHCHP +V+A Q A L++T+N + + A KL L + FF NSG+EAN+
Sbjct: 53 LGHCHPKLVEAIQEQAAKLIHTSNLYYIEPQEELAEKLVELSG--MDKVFFCNSGAEANE 110
Query: 64 LALRLARVHTNN 75
A++LAR + +
Sbjct: 111 AAIKLARKYGHK 122
>gnl|CDD|181234 PRK08117, PRK08117, 4-aminobutyrate aminotransferase; Provisional.
Length = 433
Score = 65.8 bits (161), Expect = 2e-14
Identities = 28/77 (36%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
Query: 5 VGHCHPAVVKAACTQL-ALLNT-NNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEAN 62
VGH HP VV+A Q L++ + +++++ A +LA + P L FF NSG+EA
Sbjct: 57 VGHRHPKVVQAIKEQADKLMHGPSGVIYYESILKLAEELAEITPGGLDCFFFSNSGAEAI 116
Query: 63 DLALRLARVHTNNDDVI 79
+ AL+LA+ T +I
Sbjct: 117 EGALKLAKHVTKRPYII 133
>gnl|CDD|235599 PRK05769, PRK05769, 4-aminobutyrate aminotransferase; Provisional.
Length = 441
Score = 63.4 bits (155), Expect = 2e-13
Identities = 29/79 (36%), Positives = 41/79 (51%), Gaps = 5/79 (6%)
Query: 5 VGHCHPAVVKAACTQLALLN--TNNRFLHDNLVLCARKLASLLPD--PLSVCFFVNSGSE 60
VGH HP VVKA Q + F ++ V A +L + P V FF NSG+E
Sbjct: 68 VGHAHPKVVKAVKEQAEKFLHYSLTDFYYEPAVELAERLVEIAPGGFEKKV-FFTNSGTE 126
Query: 61 ANDLALRLARVHTNNDDVI 79
+N+ A+++AR HT +I
Sbjct: 127 SNEAAIKIARYHTGRKYII 145
>gnl|CDD|235687 PRK06062, PRK06062, hypothetical protein; Provisional.
Length = 451
Score = 63.1 bits (154), Expect = 2e-13
Identities = 31/77 (40%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
Query: 5 VGHCHPAVVKAACTQLALLNT-NNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEAND 63
+GH HP VV A Q A L T +D AR +A P LS FF N G++AN+
Sbjct: 67 IGHQHPKVVAAIQEQAARLCTVAPAHANDARSEAARLIAERAPGDLSKVFFTNGGADANE 126
Query: 64 LALRLARVHTNNDDVIT 80
A+R+AR+HT V++
Sbjct: 127 HAVRMARLHTGRPKVLS 143
>gnl|CDD|179505 PRK02936, argD, acetylornithine aminotransferase; Provisional.
Length = 377
Score = 62.3 bits (152), Expect = 3e-13
Identities = 33/81 (40%), Positives = 45/81 (55%), Gaps = 11/81 (13%)
Query: 5 VGHCHPAVVKAACTQLALLNTNNRFLH-DNLVLCA--RKLASLLPD--PLSVCFFVNSGS 59
+GHCHP V KA QL + H NL + ++ASLL + + FF NSG+
Sbjct: 43 LGHCHPTVTKAVQEQL------DDIWHVSNLFTNSLQEEVASLLAENSAGDLVFFCNSGA 96
Query: 60 EANDLALRLARVHTNNDDVIT 80
EAN+ AL+LAR HT ++T
Sbjct: 97 EANEAALKLARKHTGKSKIVT 117
>gnl|CDD|180390 PRK06082, PRK06082, 4-aminobutyrate aminotransferase; Provisional.
Length = 459
Score = 59.0 bits (143), Expect = 5e-12
Identities = 25/77 (32%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Query: 5 VGHCHPAVVKAACTQLALLN-TNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEAND 63
+G+ HP V++ Q+A L + RF ++ + CA KL + L+ F G+ A
Sbjct: 85 LGYGHPHVIEKVKEQMAKLPFSPRRFTNETAIECAEKLTEIAGGELNRVLFAPGGTSAIG 144
Query: 64 LALRLARVHTNNDDVIT 80
+AL+LAR T N V++
Sbjct: 145 MALKLARHITGNFKVVS 161
>gnl|CDD|183175 PRK11522, PRK11522, putrescine--2-oxoglutarate aminotransferase;
Provisional.
Length = 459
Score = 55.9 bits (135), Expect = 6e-11
Identities = 29/70 (41%), Positives = 42/70 (60%), Gaps = 1/70 (1%)
Query: 5 VGHCHPAVVKAACTQLALLNTNNRFLHDNL-VLCARKLASLLPDPLSVCFFVNSGSEAND 63
VGH +P VV A QLA +++ L D L + A+ LA+L P L FF NSG+E+ +
Sbjct: 96 VGHRNPVVVSAVQNQLAKQPLHSQELLDPLRAMLAKTLAALTPGKLKYSFFCNSGTESVE 155
Query: 64 LALRLARVHT 73
AL+LA+ +
Sbjct: 156 AALKLAKAYQ 165
>gnl|CDD|180994 PRK07480, PRK07480, putative aminotransferase; Validated.
Length = 456
Score = 55.7 bits (135), Expect = 7e-11
Identities = 27/70 (38%), Positives = 34/70 (48%), Gaps = 3/70 (4%)
Query: 5 VGHCHPAVVKAACTQLALLNTNNRFL---HDNLVLCARKLASLLPDPLSVCFFVNSGSEA 61
VG+ + AA Q+ L N F H + A KLA + P + FF NSGSEA
Sbjct: 64 VGYGRKELADAAARQMRELPYYNTFFKTTHPPAIELAAKLAEVAPPGFNHVFFTNSGSEA 123
Query: 62 NDLALRLARV 71
ND LR+ R
Sbjct: 124 NDTVLRMVRH 133
>gnl|CDD|180401 PRK06105, PRK06105, aminotransferase; Provisional.
Length = 460
Score = 55.4 bits (134), Expect = 1e-10
Identities = 27/76 (35%), Positives = 41/76 (53%), Gaps = 3/76 (3%)
Query: 2 SLPVGHCHPAVVKAACTQLALLNTNNRF---LHDNLVLCARKLASLLPDPLSVCFFVNSG 58
S+ +G +V+AA Q+ L + F H ++ A KL ++ P P+S FF NSG
Sbjct: 59 SVALGFSEQRLVEAAARQMKKLPFYHTFSHKSHGPVIDLAEKLVAMAPVPMSKVFFTNSG 118
Query: 59 SEANDLALRLARVHTN 74
SEAND ++L + N
Sbjct: 119 SEANDTVVKLVWYYNN 134
>gnl|CDD|233098 TIGR00707, argD, transaminase, acetylornithine/succinylornithine
family. This family of proteins, for which ornithine
aminotransferases form an outgroup, consists mostly of
proteins designated acetylornithine aminotransferase.
However, the two very closely related members from E.
coli are assigned different enzymatic activities. One is
acetylornithine aminotransferase (EC 2.6.1.11), ArgD, an
enzyme of arginine biosynthesis, while another is
succinylornithine aminotransferase, an enzyme of the
arginine succinyltransferase pathway, an
ammonia-generating pathway of arginine catabolism (See
MEDLINE:98361920). Members of this family may also act
on ornithine, like ornithine aminotransferase (EC
2.6.1.13) (see MEDLINE:90337349) and on
succinyldiaminopimelate, like
N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17,
DapC, an enzyme of lysine biosynthesis) (see
MEDLINE:99175097).
Length = 379
Score = 55.1 bits (133), Expect = 1e-10
Identities = 27/70 (38%), Positives = 39/70 (55%), Gaps = 3/70 (4%)
Query: 5 VGHCHPAVVKAACTQL-ALLNTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEAND 63
+GH HP +V+A QL L++ +N + + A KL FF NSG+EAN+
Sbjct: 41 LGHAHPKLVEALKEQLEKLVHVSNLYYTEPQEELAEKLVEHSG--ADRVFFCNSGAEANE 98
Query: 64 LALRLARVHT 73
AL+LAR +T
Sbjct: 99 AALKLARKYT 108
>gnl|CDD|181707 PRK09221, PRK09221, beta alanine--pyruvate transaminase;
Provisional.
Length = 445
Score = 52.2 bits (126), Expect = 1e-09
Identities = 27/69 (39%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Query: 4 PVGHCHPAVVKAACTQLALLNTNNRFL--HDNLVLCARKLASLLPDPLSVCFFVNSGSEA 61
GH P +V+A Q A L+ F H A +LA L P L FF NSGSE+
Sbjct: 62 NAGHGRPEIVEAVARQAATLDYAPAFQMGHPLAFELAERLAELAPGGLDHVFFTNSGSES 121
Query: 62 NDLALRLAR 70
D AL++A
Sbjct: 122 VDTALKIAL 130
>gnl|CDD|179933 PRK05093, argD, bifunctional
N-succinyldiaminopimelate-
aminotransferase/acetylornithine transaminase protein;
Reviewed.
Length = 403
Score = 51.1 bits (123), Expect = 4e-09
Identities = 28/67 (41%), Positives = 40/67 (59%), Gaps = 5/67 (7%)
Query: 6 GHCHPAVVKAACTQLA-LLNTNNRFLHDNLVLCARKLASL-LPDPLSVCFFVNSGSEAND 63
GHCHPA+VKA Q L + +N F ++ + A+KL + + FF NSG+EAN+
Sbjct: 55 GHCHPALVKALKEQGEKLWHISNVFTNEPALRLAKKLIDATFAERV---FFANSGAEANE 111
Query: 64 LALRLAR 70
A +LAR
Sbjct: 112 AAFKLAR 118
>gnl|CDD|181401 PRK08360, PRK08360, 4-aminobutyrate aminotransferase; Provisional.
Length = 443
Score = 50.9 bits (122), Expect = 4e-09
Identities = 26/84 (30%), Positives = 39/84 (46%), Gaps = 14/84 (16%)
Query: 5 VGHCHPAVVKAACTQLALLNTNNRFLHDN--------LVLCARKLASLLPDPLSVCFFVN 56
VGH +P VVKA Q ++ +H +L A KL + P F
Sbjct: 55 VGHNNPRVVKAIKEQT------DKLIHYTPIYGFPVEPLLLAEKLIEIAPGDNPKVSFGL 108
Query: 57 SGSEANDLALRLARVHTNNDDVIT 80
SGS+AND A++ AR +T +++
Sbjct: 109 SGSDANDGAIKFARAYTKRRKILS 132
>gnl|CDD|233000 TIGR00508, bioA, adenosylmethionine-8-amino-7-oxononanoate
transaminase. All members of the seed alignment have
been demonstrated experimentally to act as EC 2.6.1.62,
an enzyme in the biotin biosynthetic pathway. Alternate
names include 7,8-diaminopelargonic acid
aminotransferase, DAPA aminotransferase, and
adenosylmethionine-8-amino-7-oxononanoate
aminotransferase. The gene symbol is bioA in E. coli and
BIO3 in S. cerevisiae [Biosynthesis of cofactors,
prosthetic groups, and carriers, Biotin].
Length = 417
Score = 50.6 bits (122), Expect = 4e-09
Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 10/70 (14%)
Query: 6 GHCHPAVVKAACTQLA------LLNTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGS 59
GH HP + A QL H+ + A +L + P+ L FF +SGS
Sbjct: 46 GHNHPEINAAIKEQLDKLEHVMFGG----LTHEPAIELAERLVEITPEGLEKVFFSDSGS 101
Query: 60 EANDLALRLA 69
A ++AL++A
Sbjct: 102 VAVEVALKMA 111
>gnl|CDD|181493 PRK08593, PRK08593, 4-aminobutyrate aminotransferase; Provisional.
Length = 445
Score = 50.5 bits (121), Expect = 5e-09
Identities = 29/80 (36%), Positives = 38/80 (47%), Gaps = 5/80 (6%)
Query: 5 VGHCHPAVVKAACTQLALL--NTNNRFLHDNLVLCARKLASLLPD--PLSVCFFVNSGSE 60
VGH P VV+A Q T H+ LV A+KL L P V F SGS+
Sbjct: 56 VGHAPPRVVEAIKAQADKFIHYTPAYMYHEPLVRLAKKLCELAPGDFEKRVTFG-LSGSD 114
Query: 61 ANDLALRLARVHTNNDDVIT 80
AND ++ AR +T +I+
Sbjct: 115 ANDGIIKFARAYTGRPYIIS 134
>gnl|CDD|240281 PTZ00125, PTZ00125, ornithine aminotransferase-like protein;
Provisional.
Length = 400
Score = 50.4 bits (121), Expect = 5e-09
Identities = 24/68 (35%), Positives = 34/68 (50%), Gaps = 7/68 (10%)
Query: 6 GHCHPAVVKAACTQ---LALLNTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEAN 62
GHCHP ++ A Q L L T+ F +D L L + + L +NSG+EA
Sbjct: 46 GHCHPKILAALINQAQKLTL--TSRAFYNDVLGLAEKYITDLF--GYDKVLPMNSGAEAG 101
Query: 63 DLALRLAR 70
+ AL+ AR
Sbjct: 102 ETALKFAR 109
>gnl|CDD|235885 PRK06918, PRK06918, 4-aminobutyrate aminotransferase; Reviewed.
Length = 451
Score = 50.2 bits (120), Expect = 8e-09
Identities = 27/82 (32%), Positives = 47/82 (57%), Gaps = 3/82 (3%)
Query: 2 SLPVGHCHPAVVKAACTQL-ALLNTN-NRFLHDNLVLCARKLASLLP-DPLSVCFFVNSG 58
++ VGH HP V +A Q+ ++T N +++ + A KLA+L P F+NSG
Sbjct: 65 TINVGHSHPKVKEALHKQVDQYIHTGFNVMMYEPYIELAEKLAALAPGSFDKKVLFLNSG 124
Query: 59 SEANDLALRLARVHTNNDDVIT 80
+EA + A+++AR +T +I+
Sbjct: 125 AEAVENAVKIARKYTKRQGIIS 146
>gnl|CDD|235656 PRK05964, PRK05964, adenosylmethionine--8-amino-7-oxononanoate
transaminase; Provisional.
Length = 423
Score = 49.4 bits (119), Expect = 1e-08
Identities = 24/71 (33%), Positives = 36/71 (50%), Gaps = 12/71 (16%)
Query: 6 GHCHPAVVKAACTQLALLN-------TNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSG 58
GH HP + +A QL L+ T H+ A++L +L P L FF +SG
Sbjct: 57 GHNHPYIDQAIREQLDRLDHVIFAGFT-----HEPAERLAQRLVALTPGGLDHVFFSDSG 111
Query: 59 SEANDLALRLA 69
S A ++AL++A
Sbjct: 112 SVAVEVALKMA 122
>gnl|CDD|223080 COG0001, HemL, Glutamate-1-semialdehyde aminotransferase [Coenzyme
metabolism].
Length = 432
Score = 49.5 bits (119), Expect = 1e-08
Identities = 31/77 (40%), Positives = 40/77 (51%), Gaps = 8/77 (10%)
Query: 6 GHCHPAVVKAACTQLAL-LNTNNRFLHDNLVLCARKLASLLPDPLSVCF--FVNSGSEAN 62
GH HPAVV+A QL L+ + V A L +P S+ FVNSG+EA
Sbjct: 68 GHAHPAVVEAVQEQLERGLSFGAPTELE--VELAELLIERVP---SIEKVRFVNSGTEAT 122
Query: 63 DLALRLARVHTNNDDVI 79
A+RLAR +T D +I
Sbjct: 123 MSAIRLARAYTGRDKII 139
>gnl|CDD|132415 TIGR03372, putres_am_tran, putrescine aminotransferase. Members of
this family are putrescine aminotransferase, as found in
Escherichia coli, Erwinia carotovora subsp. atroseptica,
and closely related species. This pyridoxal phosphate
enzyme, as characterized in E. coli, can act also on
cadaverine and, more weakly, spermidine [Central
intermediary metabolism, Polyamine biosynthesis].
Length = 442
Score = 48.9 bits (116), Expect = 2e-08
Identities = 29/69 (42%), Positives = 42/69 (60%), Gaps = 1/69 (1%)
Query: 5 VGHCHPAVVKAACTQLALLNTNNRFLHDNL-VLCARKLASLLPDPLSVCFFVNSGSEAND 63
VGH +P V+ A QLA +++ L D L L A+ LA+L P L FF NSG+E+ +
Sbjct: 89 VGHRNPNVIAAVENQLAKQPLHSQELLDPLRALLAKTLAALTPGKLKYSFFCNSGTESVE 148
Query: 64 LALRLARVH 72
AL+LA+ +
Sbjct: 149 AALKLAKAY 157
>gnl|CDD|132290 TIGR03246, arg_catab_astC, succinylornithine transaminase family.
Members of the seed alignment for this protein family
are the enzyme succinylornithine transaminase (EC
2.6.1.81), which catalyzes the third of five steps in
arginine succinyltransferase (AST) pathway, an
ammonia-releasing pathway of arginine degradation. All
seed alignment sequences are found within arginine
succinyltransferase operons, and all proteins that score
above 820.0 bits should function as succinylornithine
transaminase. However, a number of sequences extremely
closely related in sequence, found in different genomic
contexts, are likely to act in different biological
processes and may act on different substrates. This
model is desigated subfamily rather than equivalog,
pending further consideration, for this reason [Energy
metabolism, Amino acids and amines].
Length = 397
Score = 48.6 bits (116), Expect = 2e-08
Identities = 27/68 (39%), Positives = 40/68 (58%), Gaps = 5/68 (7%)
Query: 5 VGHCHPAVVKAACTQL-ALLNTNNRFLHDNLVLCARKLASL-LPDPLSVCFFVNSGSEAN 62
+GH HP +VKA Q L + N + ++ ++ A+KL D + FF NSG+EAN
Sbjct: 49 LGHAHPELVKALIEQADKLWHIGNGYTNEPVLRLAKKLVDATFADKV---FFCNSGAEAN 105
Query: 63 DLALRLAR 70
+ AL+LAR
Sbjct: 106 EAALKLAR 113
>gnl|CDD|183999 PRK13360, PRK13360, omega amino acid--pyruvate transaminase;
Provisional.
Length = 442
Score = 48.6 bits (116), Expect = 3e-08
Identities = 24/67 (35%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Query: 6 GHCHPAVVKAACTQLALLNTNNRFL--HDNLVLCARKLASLLPDPLSVCFFVNSGSEAND 63
GH P +V+A Q L+ F H A ++A + P L+ FF NSGSE+ D
Sbjct: 61 GHGRPEIVEAVRAQAGELDYAPAFQMGHPKAFELANRIAEIAPGGLNHVFFTNSGSESVD 120
Query: 64 LALRLAR 70
AL++A
Sbjct: 121 TALKIAL 127
>gnl|CDD|236032 PRK07495, PRK07495, 4-aminobutyrate aminotransferase; Provisional.
Length = 425
Score = 47.0 bits (112), Expect = 8e-08
Identities = 29/83 (34%), Positives = 41/83 (49%), Gaps = 15/83 (18%)
Query: 6 GHCHPAVVKAACTQLALLNTNNRFLH--------DNLVLCARKLASLLP-DPLSVCFFVN 56
GH HP V+ A QL +RF H +N V A +L +L+P D FV
Sbjct: 55 GHRHPRVIAAVKAQL------DRFTHTCHQVVPYENYVRLAERLNALVPGDFAKKTIFVT 108
Query: 57 SGSEANDLALRLARVHTNNDDVI 79
+G+EA + A+++AR T VI
Sbjct: 109 TGAEAVENAVKIARAATGRSAVI 131
>gnl|CDD|235823 PRK06541, PRK06541, hypothetical protein; Provisional.
Length = 460
Score = 46.5 bits (111), Expect = 2e-07
Identities = 23/68 (33%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
Query: 5 VGHCHPAVVKAACTQLALLN--TNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEAN 62
VGH + +AA Q L + H + A +LA+L P L+ FF GSEA
Sbjct: 66 VGHGRAELAEAAAKQAGTLAFFPLWSYAHPPAIELAERLAALAPGDLNRVFFTTGGSEAV 125
Query: 63 DLALRLAR 70
+ A +LA+
Sbjct: 126 ESAWKLAK 133
>gnl|CDD|234607 PRK00062, PRK00062, glutamate-1-semialdehyde aminotransferase;
Provisional.
Length = 426
Score = 46.2 bits (111), Expect = 2e-07
Identities = 27/86 (31%), Positives = 36/86 (41%), Gaps = 24/86 (27%)
Query: 5 VGHCHPAVVKAACTQLALLNTNNRFLHDNL---------VLCARKLASLLPDPLSV--CF 53
+GH HP VV+A L V A + L+P S+
Sbjct: 64 LGHAHPEVVEAVIEAAE----------KGLSFGAPTELEVELAELVIELVP---SIEMVR 110
Query: 54 FVNSGSEANDLALRLARVHTNNDDVI 79
VNSG+EA A+RLAR +T D +I
Sbjct: 111 MVNSGTEATMSAIRLARGYTGRDKII 136
>gnl|CDD|130940 TIGR01885, Orn_aminotrans, ornithine aminotransferase. This model
describes the final step in the biosynthesis of
ornithine from glutamate via the non-acetylated pathway.
Ornithine amino transferase takes L-glutamate
5-semialdehyde and makes it into ornithine, which is
used in the urea cycle, as well as in the biosynthesis
of arginine. This model includes low-GC bacteria and
eukaryotic species. The genes from two species are
annotated as putative acetylornithine aminotransferases
- one from Porphyromonas gingivalis (OMNI|PG1271), and
the other from Staphylococcus aureus (OMNI|SA0170).
After homology searching using BLAST it was determined
that these two sequences were most closely related to
ornithine aminotransferases. This model's seed includes
one characterized hit, from Bacillus subtilis
(SP|P38021).
Length = 401
Score = 46.2 bits (110), Expect = 2e-07
Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 15/72 (20%)
Query: 6 GHCHPAVVKAACTQLALLNTNNR-FLHDNLVLCARKLASL------LPDPLSVCFFVNSG 58
GHCHP +VKA Q L ++R F +D A + L LP +N+G
Sbjct: 52 GHCHPKIVKALTEQAQKLTLSSRAFYNDVFGEFAEYVTKLFGYDKVLP--------MNTG 103
Query: 59 SEANDLALRLAR 70
+EA + A++LAR
Sbjct: 104 AEAVETAIKLAR 115
>gnl|CDD|233100 TIGR00713, hemL, glutamate-1-semialdehyde-2,1-aminomutase. This
enzyme, glutamate-1-semialdehyde-2,1-aminomutase
(glutamate-1-semialdehyde aminotransferase, GSA
aminotransferase), contains a pyridoxal phosphate
attached at a Lys residue at position 283 of the seed
alignment. It is in the family of class III
aminotransferases [Biosynthesis of cofactors, prosthetic
groups, and carriers, Heme, porphyrin, and cobalamin].
Length = 423
Score = 46.2 bits (110), Expect = 2e-07
Identities = 29/83 (34%), Positives = 42/83 (50%), Gaps = 12/83 (14%)
Query: 2 SLPVGHCHPAVVKAACTQLAL-----LNTNNRFLHDNLVLCARKLASLLPDPLSVCFFVN 56
L +GH HP VV+A L T +L A+++ S +P + + FVN
Sbjct: 59 PLILGHAHPRVVEAVKEALERGTSYGAPTEAE------ILLAKEIISRVP-SVEMVRFVN 111
Query: 57 SGSEANDLALRLARVHTNNDDVI 79
SG+EA A+RLAR +T D +I
Sbjct: 112 SGTEATMSAVRLARGYTGRDKII 134
>gnl|CDD|171472 PRK12403, PRK12403, putative aminotransferase; Provisional.
Length = 460
Score = 45.3 bits (107), Expect = 3e-07
Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
Query: 5 VGHCHPAVVKAACTQLALLNTNNRFLHDN---LVLCARKLASLLPDPLSVCFFVNSGSEA 61
+G+ + AA Q+ L N F H ++ + L SLLP S + NSGSEA
Sbjct: 68 LGYGRKDLAAAAARQMEQLPYYNMFFHTTHPAVIELSELLFSLLPGHYSHAIYTNSGSEA 127
Query: 62 NDLALRLAR 70
N++ +R R
Sbjct: 128 NEVLIRTVR 136
>gnl|CDD|235884 PRK06917, PRK06917, hypothetical protein; Provisional.
Length = 447
Score = 45.1 bits (107), Expect = 4e-07
Identities = 18/32 (56%), Positives = 25/32 (78%)
Query: 38 ARKLASLLPDPLSVCFFVNSGSEANDLALRLA 69
A+KL+ L P L+ FFVNSGSEAN+ A+++A
Sbjct: 80 AKKLSDLSPGDLNWSFFVNSGSEANETAMKIA 111
>gnl|CDD|179270 PRK01278, argD, acetylornithine transaminase protein; Provisional.
Length = 389
Score = 45.2 bits (108), Expect = 4e-07
Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 9/71 (12%)
Query: 6 GHCHPAVVKAACTQLA-LLNTNNRFLHDNLVLCARKLASLLPDPLS---VCFFVNSGSEA 61
GH HP +V+A Q L + +N + + +LA L + S FF NSG+EA
Sbjct: 46 GHAHPHLVEALKEQAEKLWHVSNLYR----IPEQERLAERLVE-NSFADKVFFTNSGAEA 100
Query: 62 NDLALRLARVH 72
+ A++ AR +
Sbjct: 101 VECAIKTARRY 111
>gnl|CDD|183486 PRK12381, PRK12381, bifunctional succinylornithine
transaminase/acetylornithine transaminase; Provisional.
Length = 406
Score = 45.1 bits (107), Expect = 4e-07
Identities = 26/67 (38%), Positives = 41/67 (61%), Gaps = 5/67 (7%)
Query: 6 GHCHPAVVKAACTQLA-LLNTNNRFLHDNLVLCARKLA-SLLPDPLSVCFFVNSGSEAND 63
GH HPA+ +A Q + +T N + ++ ++ A+KL + D + FF NSG+EAN+
Sbjct: 54 GHAHPALREALNEQASKFWHTGNGYTNEPVLRLAKKLIDATFADRV---FFCNSGAEANE 110
Query: 64 LALRLAR 70
AL+LAR
Sbjct: 111 AALKLAR 117
>gnl|CDD|179636 PRK03715, argD, acetylornithine transaminase protein; Provisional.
Length = 395
Score = 44.3 bits (105), Expect = 9e-07
Identities = 33/87 (37%), Positives = 47/87 (54%), Gaps = 16/87 (18%)
Query: 6 GHCHPAVVKAACTQLA-LLNTNNRFLHDNLVLCARKLASLLPDPLSVC----FFVNSGSE 60
GHC+P +V+A Q L+N + F ++ + KLA LL C FF NSG+E
Sbjct: 51 GHCNPGMVEALAAQAEKLINPSPAFYNEPMA----KLAGLLTQ--HSCFDKVFFANSGAE 104
Query: 61 ANDLALRLAR----VHTNND-DVITQD 82
AN+ A++LAR H N ++IT D
Sbjct: 105 ANEGAIKLARKWGRKHKNGAYEIITFD 131
>gnl|CDD|181078 PRK07678, PRK07678, aminotransferase; Validated.
Length = 451
Score = 43.5 bits (103), Expect = 1e-06
Identities = 26/70 (37%), Positives = 35/70 (50%), Gaps = 8/70 (11%)
Query: 5 VGHCHPAVVKAACTQLALLNTNNRF----LHDNLVLCARKLASLLPDPLSVCFFVNSGSE 60
VG+ + +AA QL T + F H+ + A KL L V FF NSGSE
Sbjct: 61 VGYGRKELAEAAYEQL---KTLSYFPLTQSHEPAIKLAEKLNEWLGGEY-VIFFSNSGSE 116
Query: 61 ANDLALRLAR 70
AN+ A ++AR
Sbjct: 117 ANETAFKIAR 126
>gnl|CDD|177748 PLN00144, PLN00144, acetylornithine transaminase.
Length = 382
Score = 43.2 bits (102), Expect = 2e-06
Identities = 27/77 (35%), Positives = 37/77 (48%), Gaps = 8/77 (10%)
Query: 6 GHCHPAVVKAACTQLALL-NTNNRFLHDNLVLCARKL-ASLLPDPLSVCFFVNSGSEAND 63
GH P VKA Q L + +N + V A++L AS D + FF NSG+EAN+
Sbjct: 30 GHGDPDWVKAVAEQAGTLAHVSNVYHTIPQVELAKRLVASSFADRV---FFCNSGTEANE 86
Query: 64 LALRLAR---VHTNNDD 77
A++ AR D
Sbjct: 87 AAIKFARKYQRVRAPDK 103
>gnl|CDD|235685 PRK06058, PRK06058, 4-aminobutyrate aminotransferase; Provisional.
Length = 443
Score = 43.1 bits (102), Expect = 2e-06
Identities = 29/89 (32%), Positives = 42/89 (47%), Gaps = 19/89 (21%)
Query: 5 VGHCHPAVVKAACTQLALLNTNNRFLH--------DNLVLCARKLASLLP---DPLSVCF 53
VG+ P VV+A Q+A RF H + V A +L L P + S F
Sbjct: 70 VGNSAPRVVEAVREQVA------RFTHTCFMVTPYEGYVAVAEQLNRLTPGDHEKRSALF 123
Query: 54 FVNSGSEANDLALRLARVHTNNDDVITQD 82
NSG+EA + A+++AR +T V+ D
Sbjct: 124 --NSGAEAVENAVKIARSYTGRQAVVVFD 150
>gnl|CDD|236027 PRK07483, PRK07483, hypothetical protein; Provisional.
Length = 443
Score = 42.6 bits (101), Expect = 3e-06
Identities = 26/71 (36%), Positives = 34/71 (47%), Gaps = 10/71 (14%)
Query: 6 GHCHPAVVKAACTQLALLNTNNRFLHDNLVLC--ARKLASLL----PDPLSVCFFVNSGS 59
GH HP V+ A Q+ L + H + A LA L P L +FV+ GS
Sbjct: 45 GHSHPRVIAAIHAQIDRLA----YAHTSFFTTEPAEALADRLVAAAPAGLEHVYFVSGGS 100
Query: 60 EANDLALRLAR 70
EA + AL+LAR
Sbjct: 101 EAVEAALKLAR 111
>gnl|CDD|129783 TIGR00700, GABAtrnsam, 4-aminobutyrate aminotransferase,
prokaryotic type. This enzyme is a class III
pyridoxal-phosphate-dependent aminotransferase. This
model describes known bacterial examples of the enzyme.
The best archaeal matches are presumed but not trusted
to have the equivalent function. The degree of sequence
difference between this set and known eukaryotic
(mitochondrial) examples is greater than the distance to
some proteins known to have different functions, and so
separate models are built for prokaryotic and eukaryotic
sets. E. coli has two isozymes. Alternate names include
GABA transaminase, gamma-amino-N-butyrate transaminase,
and beta-alanine--oxoglutarate aminotransferase [Central
intermediary metabolism, Other].
Length = 420
Score = 42.2 bits (99), Expect = 4e-06
Identities = 31/83 (37%), Positives = 45/83 (54%), Gaps = 7/83 (8%)
Query: 3 LPVGHCHPAVVKAACTQLALLNTNNRFL---HDNLVLCARKLASLLP--DPLSVCFFVNS 57
L +GH HP VV A TQ+A T+ F+ ++ V A KL + P P FF NS
Sbjct: 45 LNIGHSHPRVVDAVRTQVAEF-THTCFMVTPYEGYVALAEKLNRIAPGSGPKKSVFF-NS 102
Query: 58 GSEANDLALRLARVHTNNDDVIT 80
G+EA + A+++AR +T V+
Sbjct: 103 GAEAVENAVKIARSYTGRPGVVA 125
>gnl|CDD|182078 PRK09792, PRK09792, 4-aminobutyrate transaminase; Provisional.
Length = 421
Score = 41.9 bits (98), Expect = 6e-06
Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 5/81 (6%)
Query: 3 LPVGHCHPAVVKAACTQL-ALLNTNNRFL-HDNLVLCARKLASLLP--DPLSVCFFVNSG 58
L GH HP +V A QL +T + + +++ V A K+ +L P FF +G
Sbjct: 52 LNTGHRHPDLVAAVEQQLQQFTHTAYQIVPYESYVTLAEKINALAPVSGQAKTAFF-TTG 110
Query: 59 SEANDLALRLARVHTNNDDVI 79
+EA + A+++AR HT VI
Sbjct: 111 AEAVENAVKIARAHTGRPGVI 131
>gnl|CDD|183493 PRK12389, PRK12389, glutamate-1-semialdehyde aminotransferase;
Provisional.
Length = 428
Score = 41.5 bits (98), Expect = 7e-06
Identities = 24/77 (31%), Positives = 33/77 (42%), Gaps = 8/77 (10%)
Query: 6 GHCHPAVVKAACTQLA---LLNTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEAN 62
GH HP + KA L T + A+ L +P L FVNSG+EA
Sbjct: 68 GHAHPHITKAITEAAENGVLYGTPTE--LEIEF--AKMLKEAIPS-LEKVRFVNSGTEAV 122
Query: 63 DLALRLARVHTNNDDVI 79
+R+AR +T +I
Sbjct: 123 MTTIRVARAYTGRTKII 139
>gnl|CDD|234848 PRK00854, rocD, ornithine--oxo-acid transaminase; Reviewed.
Length = 401
Score = 41.7 bits (98), Expect = 8e-06
Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 15/72 (20%)
Query: 6 GHCHPAVVKAACTQLALLNTNNR-FLHDNLVLCARKLASL------LPDPLSVCFFVNSG 58
GHCHP ++ A Q L +R F +D L +LA+L LP +NSG
Sbjct: 56 GHCHPKILAAMVEQAGRLTLTSRAFRNDQLAPLYEELAALTGSHKVLP--------MNSG 107
Query: 59 SEANDLALRLAR 70
+EA + A++ R
Sbjct: 108 AEAVETAIKAVR 119
>gnl|CDD|180441 PRK06173, PRK06173, adenosylmethionine--8-amino-7-oxononanoate
transaminase; Provisional.
Length = 429
Score = 41.3 bits (97), Expect = 1e-05
Identities = 25/66 (37%), Positives = 39/66 (59%), Gaps = 2/66 (3%)
Query: 6 GHCHPAVVKAACTQLALLN--TNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEAND 63
G+ HP + AA QLA ++ F H+ V A+KL +LP L+ FF +SGS A +
Sbjct: 59 GYNHPRLNAAATNQLAKMSHIMFGGFTHEPAVELAQKLLEILPPSLNKIFFADSGSVAVE 118
Query: 64 LALRLA 69
+A+++A
Sbjct: 119 VAMKMA 124
>gnl|CDD|179803 PRK04260, PRK04260, acetylornithine aminotransferase; Provisional.
Length = 375
Score = 41.0 bits (96), Expect = 1e-05
Identities = 28/79 (35%), Positives = 37/79 (46%), Gaps = 16/79 (20%)
Query: 9 HPAVVKAACTQLALLNTNNRFLHD-NLVL------CARKLASLLPDPLSVCFFVNSGSEA 61
HP V Q AL H NL L A+KL D + FF NSG+EA
Sbjct: 46 HPQV------QQALQKQAGLIWHSPNLYLNSLQEEVAQKLIG---DKDYLAFFCNSGAEA 96
Query: 62 NDLALRLARVHTNNDDVIT 80
N+ A+++AR T ++IT
Sbjct: 97 NEAAIKIARKATGKQEIIT 115
>gnl|CDD|180471 PRK06209, PRK06209, glutamate-1-semialdehyde 2,1-aminomutase;
Provisional.
Length = 431
Score = 38.9 bits (91), Expect = 6e-05
Identities = 24/79 (30%), Positives = 35/79 (44%), Gaps = 6/79 (7%)
Query: 2 SLPVGHCHPAVVKAACTQLALLNTNNRFLHDNL--VLCARKLASLLPDPLSVCFFVNSGS 59
++ +GH +P VV+A L F + + A L+ V F N GS
Sbjct: 59 AVGLGHAYPPVVEAVREALQD---GCNFTRPSAIELDAAESFLELIDGADMVKFCKN-GS 114
Query: 60 EANDLALRLARVHTNNDDV 78
+A A+RLAR +T D V
Sbjct: 115 DATSAAVRLARAYTGRDLV 133
>gnl|CDD|180174 PRK05630, PRK05630, adenosylmethionine--8-amino-7-oxononanoate
transaminase; Provisional.
Length = 422
Score = 39.1 bits (91), Expect = 6e-05
Identities = 20/69 (28%), Positives = 37/69 (53%), Gaps = 8/69 (11%)
Query: 6 GHCHPAVVKAACTQLALLNTNNRFL-----HDNLVLCARKLASLLPDPLSVCFFVNSGSE 60
GH HP + AA Q+ +T + + H+ + RKL +L + L F+ +SGS
Sbjct: 55 GHGHPRLKAAAHKQI---DTMSHVMFGGLTHEPAIKLTRKLLNLTDNGLDHVFYSDSGSV 111
Query: 61 ANDLALRLA 69
+ ++A+++A
Sbjct: 112 SVEVAIKMA 120
>gnl|CDD|235913 PRK07036, PRK07036, hypothetical protein; Provisional.
Length = 466
Score = 38.9 bits (91), Expect = 7e-05
Identities = 16/37 (43%), Positives = 18/37 (48%)
Query: 38 ARKLASLLPDPLSVCFFVNSGSEANDLALRLARVHTN 74
A KLA L P L+ F GS A D ALR + N
Sbjct: 101 AAKLAELAPGDLNHVFLTTGGSTAVDSALRFVHYYFN 137
>gnl|CDD|168967 PRK07481, PRK07481, hypothetical protein; Provisional.
Length = 449
Score = 38.5 bits (90), Expect = 1e-04
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 4/70 (5%)
Query: 5 VGHCHPAVVKAACTQLALLNTNNRF---LHDNLVLCARKLASLL-PDPLSVCFFVNSGSE 60
VGH V +A QL L + F H + + +L + P+ + FF + GS+
Sbjct: 56 VGHNREEVKEAIVRQLDELEYYSTFDGTTHPRAIELSYELIDMFAPEGMRRVFFSSGGSD 115
Query: 61 ANDLALRLAR 70
+ + AL+LAR
Sbjct: 116 SVETALKLAR 125
>gnl|CDD|234803 PRK00615, PRK00615, glutamate-1-semialdehyde aminotransferase;
Provisional.
Length = 433
Score = 38.2 bits (89), Expect = 1e-04
Identities = 28/78 (35%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
Query: 2 SLPVGHCHPAVVKAACTQLALLNTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEA 61
SL GH HP + A Q A T+ + +L A +L S L FV+SG+EA
Sbjct: 64 SLIHGHSHPKICDAIQ-QGAERGTSYGLTSEQEILFAEELFSYLGLEDHKIRFVSSGTEA 122
Query: 62 NDLALRLARVHTNNDDVI 79
A+RLAR T +I
Sbjct: 123 TMTAVRLARGITGRSIII 140
>gnl|CDD|168145 PRK05639, PRK05639, 4-aminobutyrate aminotransferase; Provisional.
Length = 457
Score = 38.4 bits (89), Expect = 1e-04
Identities = 23/70 (32%), Positives = 38/70 (54%), Gaps = 2/70 (2%)
Query: 6 GHCHPAVVKAACTQLALLNTNN-RFLHDNLVL-CARKLASLLPDPLSVCFFVNSGSEAND 63
G+ HP +VKA Q+AL+ + + H + A KLA + P F SGS+A D
Sbjct: 68 GYSHPKLVKAVQEQVALIQHSMIGYTHSERAIRVAEKLAEISPIENPKVLFGLSGSDAVD 127
Query: 64 LALRLARVHT 73
+A+++++ T
Sbjct: 128 MAIKVSKFST 137
>gnl|CDD|236149 PRK08088, PRK08088, 4-aminobutyrate aminotransferase; Validated.
Length = 425
Score = 37.9 bits (88), Expect = 1e-04
Identities = 27/80 (33%), Positives = 39/80 (48%), Gaps = 3/80 (3%)
Query: 3 LPVGHCHPAVVKAACTQLALL-NTNNRFL-HDNLVLCARKLASLLP-DPLSVCFFVNSGS 59
L GH HP VV A QL L +T + L ++ + K+ +P D V +GS
Sbjct: 53 LNTGHLHPKVVAAVEAQLKKLSHTCFQVLAYEPYLELCEKMNQKVPGDFAKKTLLVTTGS 112
Query: 60 EANDLALRLARVHTNNDDVI 79
EA + A+++AR T VI
Sbjct: 113 EAVENAVKIARAATKRSGVI 132
>gnl|CDD|180800 PRK07030, PRK07030, adenosylmethionine--8-amino-7-oxononanoate
transaminase; Provisional.
Length = 466
Score = 37.8 bits (88), Expect = 1e-04
Identities = 18/66 (27%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Query: 6 GHCHPAVVKAACTQLALLN--TNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEAND 63
GH +P + + Q+ L F H+ ++ + +L + P LS CF+ ++GS A +
Sbjct: 62 GHANPRINQRIKDQVDQLEHVILAGFSHEPVIELSERLVKITPPGLSRCFYADNGSSAIE 121
Query: 64 LALRLA 69
+AL+++
Sbjct: 122 VALKMS 127
>gnl|CDD|215405 PLN02760, PLN02760, 4-aminobutyrate:pyruvate transaminase.
Length = 504
Score = 37.5 bits (87), Expect = 2e-04
Identities = 25/74 (33%), Positives = 33/74 (44%), Gaps = 4/74 (5%)
Query: 5 VGHCHPAVVKAACTQLALL----NTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSE 60
+G P +V AA QL L + NR +L L L + FF NSGSE
Sbjct: 103 LGGSEPRLVAAATEQLNKLPFYHSFWNRTTKPSLDLAKELLEMFTARKMGKVFFTNSGSE 162
Query: 61 ANDLALRLARVHTN 74
AND ++L + N
Sbjct: 163 ANDTQVKLVWYYNN 176
>gnl|CDD|215335 PLN02624, PLN02624, ornithine-delta-aminotransferase.
Length = 474
Score = 37.1 bits (86), Expect = 3e-04
Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 15/72 (20%)
Query: 6 GHCHPAVVKAACTQLALLNTNNR-FLHDNLVLCARKLASL------LPDPLSVCFFVNSG 58
GHCHP ++KA Q L ++R F +D A L S+ LP +N+G
Sbjct: 90 GHCHPKIIKALTEQAEKLTLSSRAFYNDKFPEFAEYLTSMFGYDMVLP--------MNTG 141
Query: 59 SEANDLALRLAR 70
+E + A++LAR
Sbjct: 142 AEGVETAIKLAR 153
>gnl|CDD|178100 PLN02482, PLN02482, glutamate-1-semialdehyde 2,1-aminomutase.
Length = 474
Score = 36.6 bits (85), Expect = 4e-04
Identities = 14/26 (53%), Positives = 18/26 (69%)
Query: 54 FVNSGSEANDLALRLARVHTNNDDVI 79
FVNSG+EA LRLAR +T + +I
Sbjct: 160 FVNSGTEACMGVLRLARAYTGREKII 185
>gnl|CDD|180690 PRK06777, PRK06777, 4-aminobutyrate aminotransferase; Provisional.
Length = 421
Score = 36.7 bits (85), Expect = 4e-04
Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 5/82 (6%)
Query: 3 LPVGHCHPAVVKAACTQL-ALLNTNNRFL-HDNLVLCARKLASLLP--DPLSVCFFVNSG 58
L GH HP VV A QL +T + + + + V A ++ +L P P FF +G
Sbjct: 52 LNTGHRHPKVVAAVRQQLDQFTHTAYQIVPYASYVTLAERINALAPIDGPAKTAFF-TTG 110
Query: 59 SEANDLALRLARVHTNNDDVIT 80
+EA + A+++AR +T VI
Sbjct: 111 AEAVENAVKIARAYTGRPGVIA 132
>gnl|CDD|180746 PRK06916, PRK06916, adenosylmethionine--8-amino-7-oxononanoate
transaminase; Provisional.
Length = 460
Score = 35.1 bits (81), Expect = 0.001
Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 14/72 (19%)
Query: 6 GHCHPAVVKAACTQLALLNTNNRFLHDNL--------VLCARKLASLLPDPLSVCFFVNS 57
GH P + +A QL N+ H L +L A KL ++P+ L F+ +S
Sbjct: 71 GHQVPELDEAIREQL------NKIAHSTLLGLANVPSILLAEKLIEVVPEGLKKVFYSDS 124
Query: 58 GSEANDLALRLA 69
G+ A ++A+++A
Sbjct: 125 GATAVEIAIKMA 136
>gnl|CDD|129782 TIGR00699, GABAtrns_euk, 4-aminobutyrate aminotransferase,
eukaryotic type. This enzyme is a class III
pyridoxal-phosphate-dependent aminotransferase. This
model describes known eukaryotic examples of the enzyme.
The degree of sequence difference between this set and
known bacterial examples is greater than the distance
between either set the most similar enzyme with distinct
function, and so separate models are built for
prokaryotic and eukaryotic sets. Alternate names include
GABA transaminase, gamma-amino-N-butyrate transaminase,
and beta-alanine--oxoglutarate aminotransferase [Central
intermediary metabolism, Other].
Length = 464
Score = 34.8 bits (80), Expect = 0.002
Identities = 20/77 (25%), Positives = 38/77 (49%), Gaps = 6/77 (7%)
Query: 2 SLPVGHCHPAVVKAACTQLALLNTNNR-----FLHDNLVLCARK-LASLLPDPLSVCFFV 55
S+P+G+ +PA++KAA + NR F + ++ + + P +
Sbjct: 69 SIPIGYNNPALLKAAQSPEMATTLINRPALGNFPSKDWAKILKEGILKVAPKGQDQVWTG 128
Query: 56 NSGSEANDLALRLARVH 72
SGS+AN+LA + A ++
Sbjct: 129 MSGSDANELAFKAAFMY 145
>gnl|CDD|180330 PRK05965, PRK05965, hypothetical protein; Provisional.
Length = 459
Score = 34.3 bits (79), Expect = 0.003
Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
Query: 5 VGHCHPAVVKAACTQLALLNTNNRFLH---DNLVLCARKLASLLPDPLSVCFFVNSGSEA 61
VG+ ++V+AA Q+ L + H + + A KLA P L+ +F GS+A
Sbjct: 60 VGYGQESIVEAAAEQMRELPYATGYFHFGSEPAIRLAAKLAERAPGSLNHVYFTLGGSDA 119
Query: 62 NDLALRLARVHTN 74
D A+R R + N
Sbjct: 120 VDSAVRFIRHYWN 132
>gnl|CDD|179868 PRK04612, argD, acetylornithine transaminase protein; Provisional.
Length = 408
Score = 33.8 bits (77), Expect = 0.004
Identities = 24/69 (34%), Positives = 37/69 (53%), Gaps = 6/69 (8%)
Query: 5 VGHCHPAVVKAACTQLA-LLNTNNRFLHDNLVLCARKL--ASLLPDPLSVCFFVNSGSEA 61
+GH P +V A Q L +T+N F + A +L AS + + +C NSG+EA
Sbjct: 54 LGHNDPDLVAALTEQAGKLWHTSNVFYSAPPLKLAEELVTASRFAEKVFLC---NSGTEA 110
Query: 62 NDLALRLAR 70
N+ A++L R
Sbjct: 111 NEAAIKLVR 119
>gnl|CDD|101376 PRK04013, argD, acetylornithine/acetyl-lysine aminotransferase;
Provisional.
Length = 364
Score = 32.6 bits (74), Expect = 0.012
Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 3/76 (3%)
Query: 5 VGHCHPAVVKAACTQL-ALLNTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEAND 63
+GH HP V+ QL L+ F H+ +L+ + + NSG+EA +
Sbjct: 38 LGHNHPEWVEEMSEQLEKLVVAGPMFEHEEKEEMLEELSKWVN--YEYVYMGNSGTEAVE 95
Query: 64 LALRLARVHTNNDDVI 79
AL+ AR++T ++I
Sbjct: 96 AALKFARLYTGRKEII 111
>gnl|CDD|181189 PRK07986, PRK07986, adenosylmethionine--8-amino-7-oxononanoate
transaminase; Validated.
Length = 428
Score = 32.0 bits (73), Expect = 0.017
Identities = 15/34 (44%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
Query: 36 LCARKLASLLPDPLSVCFFVNSGSEANDLALRLA 69
LC RKL ++ P PL F +SGS A ++A+++A
Sbjct: 91 LC-RKLVAMTPQPLECVFLADSGSVAVEVAMKMA 123
>gnl|CDD|179736 PRK04073, rocD, ornithine--oxo-acid transaminase; Provisional.
Length = 396
Score = 32.0 bits (73), Expect = 0.018
Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 15/72 (20%)
Query: 6 GHCHPAVVKAACTQLALLNTNNRFLH-DNLVLCARKLASL------LPDPLSVCFFVNSG 58
GH HP +++A Q + +R H D L K+A L LP +N+G
Sbjct: 55 GHRHPKIIQALKDQADKVTLTSRAFHSDQLGPWYEKVAKLTGKDMVLP--------MNTG 106
Query: 59 SEANDLALRLAR 70
+EA + A++ AR
Sbjct: 107 AEAVETAIKAAR 118
>gnl|CDD|235889 PRK06931, PRK06931, diaminobutyrate--2-oxoglutarate
aminotransferase; Provisional.
Length = 459
Score = 32.0 bits (73), Expect = 0.019
Identities = 26/90 (28%), Positives = 42/90 (46%), Gaps = 17/90 (18%)
Query: 2 SLPVGHCHPAVVKAACTQLAL--------LNTNNRFLHDNLVLCARKLASLLP---DPLS 50
+L +GH HP V+++ L L T L D + L SLLP
Sbjct: 69 TLALGHNHPDVLQSIQDVLTSGLPLHTLDLTTP---LKDAF---SEYLLSLLPGQGKEYC 122
Query: 51 VCFFVNSGSEANDLALRLARVHTNNDDVIT 80
+ F SG++A + A++LA+ +T +VI+
Sbjct: 123 LQFTGPSGADAVEAAIKLAKTYTGRSNVIS 152
>gnl|CDD|179511 PRK02948, PRK02948, cysteine desulfurase; Provisional.
Length = 381
Score = 30.1 bits (68), Expect = 0.078
Identities = 13/49 (26%), Positives = 23/49 (46%), Gaps = 7/49 (14%)
Query: 26 NNRFLHDN-------LVLCARKLASLLPDPLSVCFFVNSGSEANDLALR 67
N LHD L +C + A ++ +F + G+E+N LA++
Sbjct: 30 NESSLHDIGGTASSLLQVCRKTFAEMIGGEEQGIYFTSGGTESNYLAIQ 78
>gnl|CDD|235894 PRK06943, PRK06943, adenosylmethionine--8-amino-7-oxononanoate
transaminase; Provisional.
Length = 453
Score = 29.7 bits (67), Expect = 0.12
Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Query: 6 GHCHPAVVKAACTQLALLNTN--NRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEAND 63
GH +P + A QL L H+ + A +LA+L L FF + G+ A +
Sbjct: 69 GHANPRINAALKDQLDTLEHAMLAGCTHEPAIELAERLAALTGGTLGHAFFASDGASAVE 128
Query: 64 LALRLA 69
+AL+++
Sbjct: 129 IALKMS 134
>gnl|CDD|223154 COG0076, GadB, Glutamate decarboxylase and related PLP-dependent
proteins [Amino acid transport and metabolism].
Length = 460
Score = 28.9 bits (65), Expect = 0.23
Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 3/36 (8%)
Query: 37 CARKLASL--LPDPLSVCFFVNSGSEANDLALRLAR 70
L+ L P+ S F + G+EAN LAL AR
Sbjct: 106 VVNMLSDLLGAPEEASGTF-TSGGTEANLLALLAAR 140
>gnl|CDD|236336 PRK08742, PRK08742, adenosylmethionine--8-amino-7-oxononanoate
transaminase; Provisional.
Length = 472
Score = 28.8 bits (64), Expect = 0.25
Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 7/71 (9%)
Query: 6 GHCHPAVVKAACTQLALLNTN--NRFLHDNLVLCARKLASLLP-----DPLSVCFFVNSG 58
GH P + A Q L F H+ V A +L ++ P PLS F+ ++G
Sbjct: 79 GHAEPRIGAAIAAQAGELEQVMLAGFTHEPAVQLAEQLLAIAPRQDGRAPLSKVFYADNG 138
Query: 59 SEANDLALRLA 69
S ++AL++A
Sbjct: 139 SAGVEVALKMA 149
>gnl|CDD|99740 cd00616, AHBA_syn, 3-amino-5-hydroxybenzoic acid synthase family
(AHBA_syn). AHBA_syn family belongs to pyridoxal
phosphate (PLP)-dependent aspartate aminotransferase
superfamily (fold I). The members of this CD are
involved in various biosynthetic pathways for secondary
metabolites. Some well studied proteins in this CD are
AHBA_synthase, protein product of pleiotropic
regulatory gene degT, Arnb aminotransferase and pilin
glycosylation protein. The prototype of this family,
the AHBA_synthase, is a dimeric PLP dependent enzyme.
AHBA_syn is the terminal enzyme of
3-amino-5-hydroxybenzoic acid (AHBA) formation which is
involved in the biosynthesis of ansamycin antibiotics,
including rifamycin B. Some members of this CD are
involved in 4-amino-6-deoxy-monosaccharide D-perosamine
synthesis. Perosamine is an important element in the
glycosylation of several cell products, such as
antibiotics and lipopolysaccharides of gram-positive
and gram-negative bacteria. The pilin glycosylation
protein encoded by gene pglA, is a
galactosyltransferase involved in pilin glycosylation.
Additionally, this CD consists of ArnB (PmrH)
aminotransferase, a 4-amino-4-deoxy-L-arabinose
lipopolysaccharide-modifying enzyme. This CD also
consists of several predicted pyridoxal
phosphate-dependent enzymes apparently involved in
regulation of cell wall biogenesis. The catalytic
lysine which is present in all characterized PLP
dependent enzymes is replaced by histidine in some
members of this CD.
Length = 352
Score = 28.7 bits (65), Expect = 0.25
Identities = 11/29 (37%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Query: 52 CFFVNSGSEANDLALRLARVHTNNDDVIT 80
V+SG+ A LALR + D+VI
Sbjct: 36 AVAVSSGTAALHLALRALGIG-PGDEVIV 63
>gnl|CDD|129792 TIGR00709, dat, 2,4-diaminobutyrate 4-transaminases. This family
consists of L-diaminobutyric acid transaminases. This
general designation covers both 2.6.1.76
(diaminobutyrate-2-oxoglutarate transaminase, which uses
glutamate as the amino donor in DABA biosynthesis), and
2.6.1.46 (diaminobutyrate--pyruvate transaminase, which
uses alanine as the amino donor). Most members with
known function are 2.6.1.76, and at least some
annotations as 2.6.1.46 in current databases at time of
model revision are incorrect. A distinct branch of this
family contains examples of 2.6.1.76 nearly all of which
are involved in ectoine biosynthesis. A related enzyme
is 4-aminobutyrate aminotransferase (EC 2.6.1.19), also
called GABA transaminase. These enzymes all are
pyridoxal phosphate-containing class III
aminotransferase [Central intermediary metabolism,
Other].
Length = 442
Score = 28.8 bits (64), Expect = 0.29
Identities = 21/94 (22%), Positives = 36/94 (38%), Gaps = 25/94 (26%)
Query: 2 SLPVGHCHPAVVKAACTQLALLNTNNRFLHDNLVLCARKLASLLPDPLS----------- 50
+L +GH HP + + L L L L + L D
Sbjct: 50 TLALGHNHPNMKQKILDYLQ----------SGLPLHTLDLTTPLKDAFIEALLNIIPKRK 99
Query: 51 ----VCFFVNSGSEANDLALRLARVHTNNDDVIT 80
+ F SG++A + A++LA+ +T +VI+
Sbjct: 100 MDYKLQFPGPSGADAVEAAIKLAKTYTGRTNVIS 133
>gnl|CDD|237409 PRK13520, PRK13520, L-tyrosine decarboxylase; Provisional.
Length = 371
Score = 28.3 bits (64), Expect = 0.35
Identities = 20/82 (24%), Positives = 26/82 (31%), Gaps = 23/82 (28%)
Query: 9 HPAVVKAACTQLALLNTNNRFLHDNL-------------VLCARKLASLLPDPLSVCFFV 55
HP KA FL NL L LL P + +
Sbjct: 33 HPIARKAHE----------MFLETNLGDPGLFPGTAKLEEEAVEMLGELLHLPDAYGYIT 82
Query: 56 NSGSEANDLALRLARVHTNNDD 77
+ G+EAN A+R AR +
Sbjct: 83 SGGTEANIQAVRAARNLAKAEK 104
>gnl|CDD|180487 PRK06247, PRK06247, pyruvate kinase; Provisional.
Length = 476
Score = 27.6 bits (62), Expect = 0.64
Identities = 11/37 (29%), Positives = 15/37 (40%), Gaps = 5/37 (13%)
Query: 38 ARKLASLLPDPLSVCFFVNSGSEANDLALRLARVHTN 74
AR +A L V + + + D ALR AR
Sbjct: 361 ARDIAERLDLAALVAY-----TSSGDTALRAARERPP 392
>gnl|CDD|237960 PRK15407, PRK15407, lipopolysaccharide biosynthesis protein RfbH;
Provisional.
Length = 438
Score = 27.2 bits (61), Expect = 1.0
Identities = 9/15 (60%), Positives = 9/15 (60%)
Query: 52 CFFVNSGSEANDLAL 66
VNSGS AN LA
Sbjct: 81 ALLVNSGSSANLLAF 95
>gnl|CDD|235892 PRK06938, PRK06938, diaminobutyrate--2-oxoglutarate
aminotransferase; Provisional.
Length = 464
Score = 26.1 bits (58), Expect = 1.8
Identities = 24/92 (26%), Positives = 43/92 (46%), Gaps = 22/92 (23%)
Query: 2 SLPVGHCHPAVVKAACTQLA---LLNT-------NNRFLHDNLVLCARKLASLLPDPLS- 50
+L +GH HP V++A LA L+T ++F+ D L + LP+ +
Sbjct: 74 TLALGHNHPVVIEAIQQVLADELPLHTLDLTTPVKDQFVQD--------LFASLPEAFAR 125
Query: 51 ---VCFFVNSGSEANDLALRLARVHTNNDDVI 79
+ F +G++A + AL+L + T V+
Sbjct: 126 EAKIQFCGPTGTDAVEAALKLVKTATGRSTVL 157
>gnl|CDD|225803 COG3264, COG3264, Small-conductance mechanosensitive channel [Cell
envelope biogenesis, outer membrane].
Length = 835
Score = 26.2 bits (58), Expect = 2.1
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 34 LVLCARKLASLLPDPLSVCFFVNSGSEANDLALRL 68
L+ AR+ +L DP FF G+ + D LR+
Sbjct: 737 LLEAAREHPRVLKDPAPEVFFTAFGASSLDFELRV 771
>gnl|CDD|236363 PRK09029, PRK09029, O-succinylbenzoic acid--CoA ligase;
Provisional.
Length = 458
Score = 26.0 bits (58), Expect = 2.2
Identities = 17/59 (28%), Positives = 21/59 (35%), Gaps = 1/59 (1%)
Query: 17 CTQLALLNTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVHTNN 75
LALL R L N L L LLP L++ F + E AL +
Sbjct: 68 LAYLALLQCGARVLPLNPQLPQPLLEELLPS-LTLDFALVLEGENTFSALTSLHLQLVE 125
>gnl|CDD|235610 PRK05788, PRK05788, cobalamin biosynthesis protein CbiG; Validated.
Length = 315
Score = 26.0 bits (58), Expect = 2.3
Identities = 9/20 (45%), Positives = 11/20 (55%), Gaps = 1/20 (5%)
Query: 61 ANDLALRLARVHTNNDDVIT 80
AN+LA LA+ VIT
Sbjct: 102 ANELARDLAK-ILGAVPVIT 120
>gnl|CDD|176190 cd05288, PGDH, Prostaglandin dehydrogenases. Prostaglandins and
related eicosanoids are metabolized by the oxidation of
the 15(S)-hydroxyl group of the NAD+-dependent (type I
15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH)
followed by reduction by NADPH/NADH-dependent (type II
15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to
15-keto-13,14,-dihydroprostaglandins. 13-PGR is a
bifunctional enzyme, since it also has leukotriene B(4)
12-hydroxydehydrogenase activity. These 15-PGDH and
related enzymes are members of the medium chain
dehydrogenase/reductase family. The medium chain
dehydrogenases/reductase (MDR)/zinc-dependent alcohol
dehydrogenase-like family, which contains the
zinc-dependent alcohol dehydrogenase (ADH-Zn) and
related proteins, is a diverse group of proteins related
to the first identified member, class I mammalian ADH.
MDRs display a broad range of activities and are
distinguished from the smaller short chain
dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
acids of the MDR). The MDR proteins have 2 domains: a
C-terminal NAD(P) binding-Rossmann fold domain of a
beta-alpha form and an N-terminal catalytic domain with
distant homology to GroES.
Length = 329
Score = 25.9 bits (58), Expect = 2.4
Identities = 13/35 (37%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 38 ARKLASLLPDPLSVCFFVNSGSEANDLALRLARVH 72
A L PD + V +F N G E D AL L
Sbjct: 204 AEALKEAAPDGIDV-YFDNVGGEILDAALTLLNKG 237
>gnl|CDD|215682 pfam00055, Laminin_N, Laminin N-terminal (Domain VI).
Length = 237
Score = 25.9 bits (57), Expect = 2.4
Identities = 7/22 (31%), Positives = 14/22 (63%)
Query: 61 ANDLALRLARVHTNNDDVITQD 82
A ++ + L R+HT D+++ D
Sbjct: 198 ATNIRITLQRLHTLGDNLLDSD 219
>gnl|CDD|216776 pfam01904, DUF72, Protein of unknown function DUF72. The function
of this family is unknown.
Length = 230
Score = 25.6 bits (57), Expect = 3.1
Identities = 9/36 (25%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Query: 38 ARKLASLLPDPLSVCFFVNSGSEAN--DLALRLARV 71
A ++ + + V F N+ ++ + ALRLA +
Sbjct: 194 AERIRAWAAEGKDVYVFFNNDAKGRAPENALRLAEL 229
>gnl|CDD|99742 cd01494, AAT_I, Aspartate aminotransferase (AAT) superfamily
(fold type I) of pyridoxal phosphate (PLP)-dependent
enzymes. PLP combines with an alpha-amino acid to form
a compound called a Schiff base or aldimine
intermediate, which depending on the reaction, is the
substrate in four kinds of reactions (1) transamination
(movement of amino groups), (2) racemization
(redistribution of enantiomers), (3) decarboxylation
(removing COOH groups), and (4) various side-chain
reactions depending on the enzyme involved. Pyridoxal
phosphate (PLP) dependent enzymes were previously
classified into alpha, beta and gamma classes, based on
the chemical characteristics (carbon atom involved) of
the reaction they catalyzed. The availability of
several structures allowed a comprehensive analysis of
the evolutionary classification of PLP dependent
enzymes, and it was found that the functional
classification did not always agree with the
evolutionary history of these enzymes. Structure and
sequence analysis has revealed that the PLP dependent
enzymes can be classified into four major groups of
different evolutionary origin: aspartate
aminotransferase superfamily (fold type I), tryptophan
synthase beta superfamily (fold type II), alanine
racemase superfamily (fold type III), and D-amino acid
superfamily (fold type IV) and Glycogen phophorylase
family (fold type V).
Length = 170
Score = 25.0 bits (55), Expect = 4.5
Identities = 14/34 (41%), Positives = 16/34 (47%)
Query: 33 NLVLCARKLASLLPDPLSVCFFVNSGSEANDLAL 66
L KLA LL FV SG+ AN+ AL
Sbjct: 1 KLEELEEKLARLLQPGNDKAVFVPSGTGANEAAL 34
>gnl|CDD|223476 COG0399, WecE, Predicted pyridoxal phosphate-dependent enzyme
apparently involved in regulation of cell wall
biogenesis [Cell envelope biogenesis, outer membrane].
Length = 374
Score = 24.9 bits (55), Expect = 5.2
Identities = 10/26 (38%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Query: 55 VNSGSEANDLALRLARVHTNNDDVIT 80
V+SG+ A LAL + D+VI
Sbjct: 55 VSSGTAALHLALLALAI-GPGDEVIV 79
>gnl|CDD|234361 TIGR03812, tyr_de_CO2_Arch, tyrosine decarboxylase MnfA. Members
of this protein family are the archaeal form, MnfA, of
tyrosine decarboxylase, and are involved in
methanofuran biosynthesis. Members show clear homology
to the Enterococcus form, Tdc, that is involved in
tyrosine decarboxylation for resistance to acidic
conditions [Biosynthesis of cofactors, prosthetic
groups, and carriers, Other].
Length = 373
Score = 25.0 bits (55), Expect = 6.2
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 37 CARKLASLLPDPLSVCFFVNSGSEANDLALRLAR 70
L +LL P + + V+ G+EAN A+R A+
Sbjct: 64 VVGSLGNLLHLPDAYGYIVSGGTEANIQAVRAAK 97
>gnl|CDD|99743 cd06450, DOPA_deC_like, DOPA decarboxylase family. This family
belongs to pyridoxal phosphate (PLP)-dependent
aspartate aminotransferase superfamily (fold I). The
major groups in this CD correspond to DOPA/tyrosine
decarboxylase (DDC), histidine decarboxylase (HDC), and
glutamate decarboxylase (GDC). DDC is active as a dimer
and catalyzes the decarboxylation of tyrosine. GDC
catalyzes the decarboxylation of glutamate and HDC
catalyzes the decarboxylation of histidine.
Length = 345
Score = 24.9 bits (55), Expect = 6.7
Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Query: 37 CARKLASL--LPDPLSVCFFVNSGSEANDLALRLAR 70
LA L LP + F + GSE+N LAL AR
Sbjct: 43 VVNWLAKLFGLPSEDADGVFTSGGSESNLLALLAAR 78
>gnl|CDD|233853 TIGR02407, ectoine_ectB, diaminobutyrate--2-oxoglutarate
aminotransferase. Members of this family of class III
pyridoxal-phosphate-dependent aminotransferases are
diaminobutyrate--2-oxoglutarate aminotransferase (EC
2.6.1.76) that catalyze the first step in ectoine
biosynthesis from L-aspartate beta-semialdehyde. This
family is readily separated phylogenetically from
enzymes with the same substrate and product but involved
in other process such as siderophore (SP|Q9Z3R2) or
1,3-diaminopropane (SP|P44951) biosynthesis. The family
TIGR00709 previously included both groups but has now
been revised to exclude the ectoine biosynthesis
proteins of this family. Ectoine is a compatible solute
particularly effective in conferring salt tolerance
[Cellular processes, Adaptations to atypical
conditions].
Length = 412
Score = 24.5 bits (54), Expect = 6.8
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 58 GSEANDLALRLARVHTNNDDVIT 80
G+ A + AL+LAR T +V++
Sbjct: 108 GTNAVESALKLARKVTGRSNVVS 130
>gnl|CDD|131984 TIGR02938, nifL_nitrog, nitrogen fixation negative regulator NifL.
NifL is a modulator of the nitrogen fixation positive
regulator protein NifA, and is therefore a negative
regulator. It binds NifA. NifA and NifL are encoded by
adjacent genes [Central intermediary metabolism,
Nitrogen fixation, Regulatory functions, Protein
interactions].
Length = 494
Score = 24.5 bits (53), Expect = 8.1
Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
Query: 11 AVVKAACTQLALLNTNNRFLHDNLVLCARKLASLL 45
+VV AA LL+ R + DN KLA+ L
Sbjct: 134 SVVDAAPVAFVLLDPTGRVILDNQEYK--KLATDL 166
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.323 0.134 0.409
Gapped
Lambda K H
0.267 0.0653 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 3,954,550
Number of extensions: 297131
Number of successful extensions: 493
Number of sequences better than 10.0: 1
Number of HSP's gapped: 436
Number of HSP's successfully gapped: 96
Length of query: 83
Length of database: 10,937,602
Length adjustment: 52
Effective length of query: 31
Effective length of database: 8,631,194
Effective search space: 267567014
Effective search space used: 267567014
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (24.4 bits)