RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6206
(83 letters)
>1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase;
HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP:
c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A*
1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A*
1d7r_A* 1d7v_A* 1z3z_A*
Length = 433
Score = 102 bits (256), Expect = 1e-27
Identities = 23/81 (28%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Query: 1 MSLPVGHCHPAVVKAACTQLALLN-TNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGS 59
MS +GHCHP +V L+ + L +V A +LA++ P L +++G+
Sbjct: 53 MSAVLGHCHPEIVSVIGEYAGKLDHLFSEMLSRPVVDLATRLANITPPGLDRALLLSTGA 112
Query: 60 EANDLALRLARVHTNNDDVIT 80
E+N+ A+R+A++ T +++
Sbjct: 113 ESNEAAIRMAKLVTGKYEIVG 133
>3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1,
pyridoxal-5'-phosphate dependent racemase, pyrid
phosphate, isomerase; HET: PLP; 2.21A {Achromobacter
obae} PDB: 2zuk_A* 3dxw_A*
Length = 439
Score = 90.3 bits (225), Expect = 2e-23
Identities = 23/78 (29%), Positives = 34/78 (43%), Gaps = 3/78 (3%)
Query: 5 VGHCHPAVVKAACTQLALLN--TNNRFLHDNLVLCARKLASLLP-DPLSVCFFVNSGSEA 61
+G+ HPA+V A A T + V A +L + P + +F +SGS+A
Sbjct: 57 LGYGHPAIVAAVSAAAANPAGATILSASNAPAVTLAERLLASFPGEGTHKIWFGHSGSDA 116
Query: 62 NDLALRLARVHTNNDDVI 79
N+ A R T VI
Sbjct: 117 NEAAYRAIVKATGRSGVI 134
>3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle
structural genomics center for infectious disease; HET:
LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A
Length = 451
Score = 81.9 bits (203), Expect = 2e-20
Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 3/79 (3%)
Query: 5 VGHCHPAVVKAACTQLALL--NTNNRFLHDNLVLCARKLASLLPDP-LSVCFFVNSGSEA 61
VG+ P VV+A +Q+ ++ V +L L P NSGSEA
Sbjct: 75 VGNSAPKVVEAVRSQVGDFTHTCFMVTPYEGYVAVCEQLNRLTPVRGDKRSALFNSGSEA 134
Query: 62 NDLALRLARVHTNNDDVIT 80
+ A+++AR HT+ V+
Sbjct: 135 VENAVKIARSHTHKPAVVA 153
>4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics,
niaid, national institute of allergy AN infectious
diseases; HET: LLP; 1.80A {Mycobacterium abscessus}
Length = 453
Score = 81.5 bits (202), Expect = 4e-20
Identities = 23/79 (29%), Positives = 33/79 (41%), Gaps = 3/79 (3%)
Query: 5 VGHCHPAVVKAACTQLALL--NTNNRFLHDNLVLCARKLASLLPDPLSVC-FFVNSGSEA 61
VG HPAV A Q ++ V A L +L P NSG+EA
Sbjct: 78 VGASHPAVAAAIADQATHFTHTCFMVTPYEQYVQVAELLNALTPGDHDKRTALFNSGAEA 137
Query: 62 NDLALRLARVHTNNDDVIT 80
+ A+++AR+ T V+
Sbjct: 138 VENAIKVARLATGRPAVVA 156
>1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A
{Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A*
1szu_A* 1szs_A*
Length = 426
Score = 81.1 bits (201), Expect = 4e-20
Identities = 21/79 (26%), Positives = 32/79 (40%), Gaps = 3/79 (3%)
Query: 5 VGHCHPAVVKAACTQLALL--NTNNRFLHDNLVLCARKLASLLPDPLSVC-FFVNSGSEA 61
GH HP VV A QL L ++ + + +P + V +GSEA
Sbjct: 55 TGHLHPKVVAAVEAQLKKLSHTCFQVLAYEPYLELCEIMNQKVPGDFAKKTLLVTTGSEA 114
Query: 62 NDLALRLARVHTNNDDVIT 80
+ A+++AR T I
Sbjct: 115 VENAVKIARAATKRSGTIA 133
>1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken
structural genomics/proteomics initiative, RSGI,
structural genomics; HET: PLP; 1.35A {Thermus
thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A*
Length = 395
Score = 79.1 bits (196), Expect = 2e-19
Identities = 27/77 (35%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
Query: 5 VGHCHPAVVKAACTQLA-LLNTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEAND 63
+GH +P VV+A Q L+ R L ++LP L+ F VNSG+EAN+
Sbjct: 59 LGHGNPEVVEAVKRQAETLMAMPQTLPTPMRGEFYRTLTAILPPELNRVFPVNSGTEANE 118
Query: 64 LALRLARVHTNNDDVIT 80
AL+ AR HT +
Sbjct: 119 AALKFARAHTGRKKFVA 135
>3nui_A Pyruvate transaminase; amino transferase, transferase; 2.00A
{Vibrio fluvialis}
Length = 478
Score = 74.9 bits (185), Expect = 9e-18
Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 3/69 (4%)
Query: 5 VGHCHPAVVKAACTQLALL---NTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEA 61
G H ++ AA Q + + D V+ + KL + P F+ NSGSEA
Sbjct: 75 AGFDHKGLIDAAKAQYERFPGYHAFFGRMSDQTVMLSEKLVEVSPFDSGRVFYTNSGSEA 134
Query: 62 NDLALRLAR 70
ND +++
Sbjct: 135 NDTMVKMLW 143
>3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent
transferase-like fold, ST genomics, joint center for
structural genomics, JCSG; HET: MSE LLP PLP; 1.55A
{Mesorhizobium loti} PDB: 3fcr_A*
Length = 460
Score = 73.8 bits (182), Expect = 2e-17
Identities = 16/69 (23%), Positives = 29/69 (42%), Gaps = 3/69 (4%)
Query: 5 VGHCHPAVVKAACTQLALL---NTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEA 61
VG+ + A TQ L + + + A+ + P +S +F SGS+A
Sbjct: 65 VGYGRQKIADAIATQAKNLAYYHAYVGHGTEASITLAKMIIDRAPKGMSRVYFGLSGSDA 124
Query: 62 NDLALRLAR 70
N+ ++L
Sbjct: 125 NETNIKLIW 133
>3hmu_A Aminotransferase, class III; structural genomics, pyridoxal
phosphate, PSI-2, protein structure initiative; 2.10A
{Silicibacter pomeroyi}
Length = 472
Score = 73.4 bits (181), Expect = 3e-17
Identities = 24/69 (34%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
Query: 5 VGHCHPAVVKAACTQLALL---NTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEA 61
+G+ + + A Q+ L NT + H + A+KLA L P L+ FF GSEA
Sbjct: 69 IGYGRDELAEVAARQMRELPYYNTFFKTTHVPAIALAQKLAELAPGDLNHVFFAGGGSEA 128
Query: 62 NDLALRLAR 70
ND +R+ R
Sbjct: 129 NDTNIRMVR 137
>1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN
acid, antiepileptic drug target; HET: PLP; 2.3A {Sus
scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A*
Length = 472
Score = 73.1 bits (180), Expect = 3e-17
Identities = 20/80 (25%), Positives = 34/80 (42%), Gaps = 6/80 (7%)
Query: 2 SLPVGHCHPAVVKAACTQLALLNTNNR-----FLHDNLV-LCARKLASLLPDPLSVCFFV 55
S+P+G+ HPA+VK + NR +N V L S+ P +S +
Sbjct: 74 SIPIGYSHPALVKLVQQPQNVSTFINRPALGILPPENFVEKLRESLLSVAPKGMSQLITM 133
Query: 56 NSGSEANDLALRLARVHTNN 75
GS +N+ A + + +
Sbjct: 134 ACGSCSNENAFKTIFMWYRS 153
>3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target
11246C, pyridoxal phosphate, PSI-2, protein structure
initiative; 1.70A {Deinococcus radiodurans}
Length = 430
Score = 73.0 bits (180), Expect = 4e-17
Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
Query: 5 VGHCHPAVVKAACTQLALLNTNNRFL--HDNLVLCARKLASLLPDPLSVCFFVNSGSEAN 62
+GH V + Q A L + D L A +LA + P + V+ GSEA
Sbjct: 43 IGHGRAEVGERMAAQAARLPFVHGSQFSSDVLEEYAGRLARFVGLPTFRFWAVSGGSEAT 102
Query: 63 DLALRLAR 70
+ A++LAR
Sbjct: 103 ESAVKLAR 110
>2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal
phosphate, PLP, RV3290C, lysine amino transferase; HET:
PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A*
2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A
Length = 449
Score = 73.1 bits (180), Expect = 4e-17
Identities = 20/81 (24%), Positives = 31/81 (38%), Gaps = 7/81 (8%)
Query: 2 SLPVGHCHPAVVKAACTQLALLN------TNNRFLHDNLVLCARKLASLLPDP-LSVCFF 54
S +G PA+V L+ +N+ + A +L DP L FF
Sbjct: 65 SSALGMNPPALVDDREFHAELMQAALNKPSNSDVYSVAMARFVETFARVLGDPALPHLFF 124
Query: 55 VNSGSEANDLALRLARVHTNN 75
V G+ A + AL+ A +
Sbjct: 125 VEGGALAVENALKAAFDWKSR 145
>4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase
fold type I; HET: TA8; 1.35A {Chromobacterium violaceum}
PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A*
Length = 459
Score = 72.6 bits (179), Expect = 5e-17
Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
Query: 5 VGHCHPAVVKAACTQLALL---NTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEA 61
VG+ +AA Q+ L NT + H +V + LA + P F+ NSGSE+
Sbjct: 64 VGYGRKDFAEAARRQMEELPFYNTFFKTTHPAVVELSSLLAEVTPAGFDRVFYTNSGSES 123
Query: 62 NDLALRLAR 70
D +R+ R
Sbjct: 124 VDTMIRMVR 132
>2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural
genomics, NPPSFA, N project on protein structural and
functional analyses; HET: PLP; 1.90A {Sulfolobus
tokodaii}
Length = 419
Score = 71.5 bits (176), Expect = 1e-16
Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 4/77 (5%)
Query: 7 HCHPAVVKAACTQLALL--NTNNRFLHDNLVLCARKLASLLPDPLSV-CFFVNSGSEAND 63
HP V+K Q+ L N F + + A+KL + P FF NSG+EA +
Sbjct: 59 PSHPEVIKIGIEQMQKLAHAAANDFYNIPQLELAKKLVTYSPGNFQKKVFFSNSGTEAIE 118
Query: 64 LALRLARVHTNNDDVIT 80
++++ + +T +I
Sbjct: 119 ASIKVVK-NTGRKYIIA 134
>3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr;
aminotransferase, csgid; 2.05A {Bacillus anthracis}
Length = 452
Score = 69.5 bits (171), Expect = 6e-16
Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Query: 5 VGHCHPAVVKAACTQLALLN-TNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEAND 63
G+ + +AA QL L+ H+ + A KL L + FF NSGSEAN+
Sbjct: 63 SGYGRKELAEAAYKQLQTLSYFPMSQSHEPAIKLAEKLNEWLGGEYVI-FFSNSGSEANE 121
Query: 64 LALRLAR 70
A ++AR
Sbjct: 122 TAFKIAR 128
>3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet,
transaminase, pyridox phosphate; HET: PLP; 1.40A
{Pseudomonas putida}
Length = 449
Score = 69.1 bits (170), Expect = 8e-16
Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
Query: 4 PVGHCHPAVVKAACTQLALLNTNNRF--LHDNLVLCARKLASLLPDPLSVCFFVNSGSEA 61
GH + +A QL+ L+ + F H A K+ L P L+ FF +SGSE
Sbjct: 63 GAGHTRKEIQEAVAKQLSTLDYSPGFQYGHPLSFQLAEKITDLTPGNLNHVFFTDSGSEC 122
Query: 62 NDLALRLAR 70
A+++ R
Sbjct: 123 ALTAVKMVR 131
>3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST
genomics, protein structure initiative; HET: PLP; 2.00A
{Rhodobacter sphaeroides 2}
Length = 476
Score = 69.2 bits (170), Expect = 1e-15
Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 2/69 (2%)
Query: 4 PVGHCHPAVVKAACTQLALLNTNNRFL--HDNLVLCARKLASLLPDPLSVCFFVNSGSEA 61
VG+ +V A Q +L + + A K+A+L P L+ FF GS A
Sbjct: 67 QVGYGRREIVDAMAHQAMVLPYASPWYMATSPAARLAEKIATLTPGDLNRIFFTTGGSTA 126
Query: 62 NDLALRLAR 70
D ALR +
Sbjct: 127 VDSALRFSE 135
>3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for
structural genomics O infectious diseases, alpha and
beta protein; HET: LLP; 2.65A {Bacillus anthracis}
Length = 392
Score = 64.5 bits (158), Expect = 3e-14
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
Query: 6 GHCHPAVVKAACTQLA-LLNTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDL 64
GH HP ++ A Q + T+ F D L K+A L + +N+G+EA +
Sbjct: 51 GHRHPKIINALIDQANRVTLTSRAFHSDQLGPWYEKVAKLT--NKEMVLPMNTGAEAVET 108
Query: 65 ALRLAR 70
A++ AR
Sbjct: 109 AIKTAR 114
>1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC,
malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4
PDB: 3lg0_A 3ntj_A
Length = 433
Score = 63.4 bits (155), Expect = 8e-14
Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Query: 6 GHCHPAVVKAACTQLA-LLNTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDL 64
GHCHP ++ A Q L + F L +C R L +LL +N+G+EAN+
Sbjct: 80 GHCHPNILNAMINQAKNLTICSRAFFSVPLGICERYLTNLL--GYDKVLMMNTGAEANET 137
Query: 65 ALRLAR 70
A +L R
Sbjct: 138 AYKLCR 143
>2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent
ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens}
SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A*
2can_A*
Length = 439
Score = 63.4 bits (155), Expect = 1e-13
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
Query: 6 GHCHPAVVKAACTQLA-LLNTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDL 64
GHCHP +V A +Q+ L T+ F ++ L + L +N+G EA +
Sbjct: 91 GHCHPKIVNALKSQVDKLTLTSRAFYNNVLGEYEEYITKLF--NYHKVLPMNTGVEAGET 148
Query: 65 ALRLAR 70
A +LAR
Sbjct: 149 ACKLAR 154
>3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr;
aminotransferase, biotin biosynthesis, pyridoxal
phosphate, adenosyl-L-methionine; HET: PLP; 1.90A
{Bacillus subtilis} PDB: 3drd_A 3du4_A*
Length = 448
Score = 62.2 bits (152), Expect = 2e-13
Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 2/68 (2%)
Query: 5 VGHCHPAVVKAACTQLALLN--TNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEAN 62
GH + A QL + T + A L + P L+ F+ +SG+EA
Sbjct: 58 HGHRKKELDDAIKKQLGKIAHSTLLGMTNVPATQLAETLIDISPKKLTRVFYSDSGAEAM 117
Query: 63 DLALRLAR 70
++AL++A
Sbjct: 118 EIALKMAF 125
>2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics,
NPPSFA, national project on prote structural and
functional analyses; HET: PLP; 1.90A {Aquifex aeolicus}
Length = 375
Score = 61.3 bits (150), Expect = 5e-13
Identities = 22/68 (32%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Query: 6 GHCHPAVVKAACTQLA-LLNTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDL 64
GH +P + +A Q+ LL+ +N + + A KL V FF NSG+E+ +
Sbjct: 43 GHAYPKLTEALKEQVEKLLHVSNLYENPWQEELAHKLVKHFWTEGKV-FFANSGTESVEA 101
Query: 65 ALRLARVH 72
A++LAR +
Sbjct: 102 AIKLARKY 109
>2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine
aminotransferase (EC 2.6.1.11) (ACOA structural
genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8}
PDB: 2e54_A*
Length = 397
Score = 59.1 bits (144), Expect = 3e-12
Identities = 22/66 (33%), Positives = 36/66 (54%), Gaps = 3/66 (4%)
Query: 6 GHCHPAVVKAACTQLA-LLNTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDL 64
GH HP +V+A Q L++ +N F + + A L+ FF N+G+EAN+
Sbjct: 55 GHSHPRLVEAIKDQAEKLIHCSNLFWNRPQMELAELLSKN--TFGGKVFFANTGTEANEA 112
Query: 65 ALRLAR 70
A+++AR
Sbjct: 113 AIKIAR 118
>3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural
genomics, center for structural genomics O infectious
diseases; 1.80A {Campylobacter jejuni subsp}
Length = 395
Score = 58.7 bits (143), Expect = 4e-12
Identities = 21/66 (31%), Positives = 35/66 (53%), Gaps = 3/66 (4%)
Query: 6 GHCHPAVVKAACTQLA-LLNTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDL 64
G+ H Q+ LL+T+N + ++N+ A+ LA L FF NSG+E+ +
Sbjct: 51 GYNHAKFNAKIKAQVDKLLHTSNLYYNENIAAAAKNLAKA--SALERVFFTNSGTESIEG 108
Query: 65 ALRLAR 70
A++ AR
Sbjct: 109 AMKTAR 114
>2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal
5'-phosphate, arginine metabolism, lysine biosynthesis,
gabaculine; HET: PLP; 1.91A {Salmonella typhimurium}
PDB: 2pb0_A*
Length = 420
Score = 57.9 bits (141), Expect = 7e-12
Identities = 28/68 (41%), Positives = 40/68 (58%), Gaps = 7/68 (10%)
Query: 6 GHCHPAVVKAACTQLA-LLNTNNRFLHDNLVLCARKLASLLPD--PLSVCFFVNSGSEAN 62
GHCHPA+V+A +Q L +T+N F ++ A +L L D F+NSG+EAN
Sbjct: 72 GHCHPALVEALKSQGETLWHTSNVFTNEP----ALRLGRKLIDATFAERVLFMNSGTEAN 127
Query: 63 DLALRLAR 70
+ A +LAR
Sbjct: 128 ETAFKLAR 135
>3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase,
transferase-transferase inhibitor complex; HET: PL8;
1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A*
3lv2_A*
Length = 457
Score = 55.7 bits (135), Expect = 5e-11
Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
Query: 6 GHCHPAVVKAACTQLALLN--TNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEAND 63
GH HPA+ +A TQL ++N H+ A+ L + P L FF +SGS + +
Sbjct: 90 GHGHPALDQALTTQLRVMNHVMFGGLTHEPAARLAKLLVDITPAGLDTVFFSDSGSVSVE 149
Query: 64 LALRLA 69
+A ++A
Sbjct: 150 VAAKMA 155
>1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold
type I, subclass II, homodimer; HET: LLP; 1.71A
{Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A*
1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A*
1dty_A*
Length = 429
Score = 55.2 bits (134), Expect = 6e-11
Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Query: 6 GHCHPAVVKAACTQLALLN--TNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEAND 63
G+ HP + A +Q+ ++ H + RKL ++ P PL F +SGS A +
Sbjct: 58 GYNHPQLNAAMKSQIDAMSHVMFGGITHAPAIELCRKLVAMTPQPLECVFLADSGSVAVE 117
Query: 64 LALRLA 69
+A+++A
Sbjct: 118 VAMKMA 123
>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase;
BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A
{Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A*
Length = 831
Score = 48.0 bits (114), Expect = 3e-08
Identities = 12/69 (17%), Positives = 26/69 (37%), Gaps = 4/69 (5%)
Query: 6 GH-CHPAVVKAACTQLALLN--TNNRFLHDNLVLCARKLASLLPDP-LSVCFFVNSGSEA 61
+ + A +++ + CA L + S +F ++GS A
Sbjct: 395 DPTFQAELAREMGYTAARFGHVMFPENVYEPALKCAELLLDGVGKGWASRVYFSDNGSTA 454
Query: 62 NDLALRLAR 70
++AL++A
Sbjct: 455 IEIALKMAF 463
>2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium
SP} PDB: 2ykv_A* 2yku_A* 2ykx_A*
Length = 465
Score = 47.6 bits (114), Expect = 3e-08
Identities = 21/87 (24%), Positives = 29/87 (33%), Gaps = 26/87 (29%)
Query: 5 VGHCHPAVVKA------------ACTQLALLNTNNRFLHDNLVLCARKLASLLPDPLSVC 52
GH HP + A T+ L A + P + +
Sbjct: 114 FGHSHPVIRAAVERALAVGLNLSTQTENE-------------ALFAEAVCDRFP-SIDLV 159
Query: 53 FFVNSGSEANDLALRLARVHTNNDDVI 79
F NSG+EAN +AL A T V+
Sbjct: 160 RFTNSGTEANLMALATATAITGRKTVL 186
>2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics,
NPPSFA, national PROJ protein structural and functional
analyses; 2.30A {Pseudomonas stutzeri}
Length = 453
Score = 45.7 bits (109), Expect = 2e-07
Identities = 22/79 (27%), Positives = 33/79 (41%), Gaps = 10/79 (12%)
Query: 5 VGHCHPAVVKAACTQLALLNTNNRFL----HDNLVLCARKLASLLPDPLSVCFFVNSGSE 60
+GH HP V A L+ + H V A ++ + P + F SG+E
Sbjct: 71 LGHGHPRVNAAIAEALS-----HGVQYAASHPLEVRWAERIVAAFP-SIRKLRFTGSGTE 124
Query: 61 ANDLALRLARVHTNNDDVI 79
LALR+AR T ++
Sbjct: 125 TTLLALRVARAFTGRRMIL 143
>2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA,
structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus
thermophilus}
Length = 424
Score = 44.8 bits (107), Expect = 3e-07
Identities = 25/87 (28%), Positives = 36/87 (41%), Gaps = 26/87 (29%)
Query: 5 VGHCHPAVVKA------------ACTQLALLNTNNRFLHDNLVLCARKLASLLPDPLSVC 52
+GH HP V+ A + L V A+K+ P + +
Sbjct: 66 LGHAHPKVLARVRETLERGLTFGAPSPLE-------------VALAKKVKRAYP-FVDLV 111
Query: 53 FFVNSGSEANDLALRLARVHTNNDDVI 79
FVNSG+EA ALRLAR +T ++
Sbjct: 112 RFVNSGTEATMSALRLARGYTGRPYIV 138
>2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA,
structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum
pernix} PDB: 2zsl_A* 2zsm_A*
Length = 434
Score = 44.8 bits (107), Expect = 3e-07
Identities = 25/87 (28%), Positives = 37/87 (42%), Gaps = 26/87 (29%)
Query: 5 VGHCHPAVVKA------------ACTQLALLNTNNRFLHDNLVLCARKLASLLPDPLSVC 52
+GH HP V++A A + VL A K+ + +
Sbjct: 70 LGHKHPRVLEAVEEALARGWLYGAPGEAE-------------VLLAEKILGYVK-RGGMI 115
Query: 53 FFVNSGSEANDLALRLARVHTNNDDVI 79
FVNSG+EA A+RLAR +T D ++
Sbjct: 116 RFVNSGTEATMTAIRLARGYTGRDLIL 142
>3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance,
microev0lution, integrated approach, chlorophyll
biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus
pcc 6301} PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A*
2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A*
Length = 427
Score = 44.4 bits (106), Expect = 4e-07
Identities = 23/87 (26%), Positives = 34/87 (39%), Gaps = 26/87 (29%)
Query: 5 VGHCHPAVVKA------------ACTQLALLNTNNRFLHDNLVLCARKLASLLPDPLSVC 52
GH HP V++A A L + A + +P + +
Sbjct: 66 CGHAHPEVIEALKVAMEKGTSFGAPCALE-------------NVLAEMVNDAVP-SIEMV 111
Query: 53 FFVNSGSEANDLALRLARVHTNNDDVI 79
FVNSG+EA LR+ R +T D +I
Sbjct: 112 RFVNSGTEACMAVLRIMRAYTGRDKII 138
>3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class,
PLP-dependent transferase-like, bacillus A csgid,
porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus
anthracis}
Length = 434
Score = 44.4 bits (106), Expect = 4e-07
Identities = 24/87 (27%), Positives = 33/87 (37%), Gaps = 26/87 (29%)
Query: 5 VGHCHPAVVKA------------ACTQLALLNTNNRFLHDNLVLCARKLASLLPDPLSVC 52
GH HP + KA T L V A+ L +P L
Sbjct: 69 TGHAHPHITKAITTAAENGVLYGTPTALE-------------VKFAKMLKEAMP-ALDKV 114
Query: 53 FFVNSGSEANDLALRLARVHTNNDDVI 79
FVNSG+EA +R+AR +T ++
Sbjct: 115 RFVNSGTEAVMTTIRVARAYTGRTKIM 141
>3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of
cofactors, prosthetic groups, and carriers, csgid,
cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus
anthracis str} PDB: 3bs8_A*
Length = 429
Score = 44.4 bits (106), Expect = 4e-07
Identities = 22/87 (25%), Positives = 36/87 (41%), Gaps = 26/87 (29%)
Query: 5 VGHCHPAVVKA------------ACTQLALLNTNNRFLHDNLVLCARKLASLLPDPLSVC 52
GH + VV+A A T++ A+ + +P + +
Sbjct: 67 HGHANDRVVEALKAVAERGTSFGAPTEIE-------------NKLAKLVIERVP-SIEIV 112
Query: 53 FFVNSGSEANDLALRLARVHTNNDDVI 79
VNSG+EA ALRLAR +T + ++
Sbjct: 113 RMVNSGTEATMSALRLARGYTGRNKIL 139
>4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics,
center for structural genomics of infec diseases, csgid,
porphyrin biosynthesis; 2.00A {Yersinia pestis}
Length = 429
Score = 44.0 bits (105), Expect = 5e-07
Identities = 26/87 (29%), Positives = 40/87 (45%), Gaps = 26/87 (29%)
Query: 5 VGHCHPAVVKA------------ACTQLALLNTNNRFLHDNLVLCARKLASLLPDPLSVC 52
+GH HPA+ +A A T++ V A+ + L+P + +
Sbjct: 67 LGHNHPAIRQAVIEAVERGLSFGAPTEME-------------VKMAQLVTDLVP-TMDMV 112
Query: 53 FFVNSGSEANDLALRLARVHTNNDDVI 79
VNSG+EA A+RLAR +T D +I
Sbjct: 113 RMVNSGTEATMSAIRLARGYTGRDKII 139
>3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate
aminotransferase, colitose, perosamine, O-antigen,
pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia
coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A*
Length = 390
Score = 30.6 bits (70), Expect = 0.035
Identities = 9/34 (26%), Positives = 13/34 (38%), Gaps = 5/34 (14%)
Query: 52 CFFVNSGSEANDLALRLARVHTN-----NDDVIT 80
V+SGS AN L + D++I
Sbjct: 52 AVMVSSGSTANLLMIAALFFTKKPRLKKGDEIIV 85
>3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine
decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP;
2.11A {Methanocaldococcus jannaschii}
Length = 397
Score = 30.0 bits (68), Expect = 0.057
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 37 CARKLASLLPDPLSVCFFVNSGSEANDLALRLAR 70
L SLL + + V+ G+EAN +ALR +
Sbjct: 74 AVALLGSLLNNKDAYGHIVSGGTEANLMALRCIK 107
>3bb8_A CDP-4-keto-6-deoxy-D-glucose-3-dehydrase; aspartate
aminotransferase fold, oxidoreductase; HET: PLP; 2.35A
{Yersinia pseudotuberculosis} PDB: 3bcx_A
Length = 437
Score = 29.2 bits (66), Expect = 0.095
Identities = 12/36 (33%), Positives = 13/36 (36%), Gaps = 7/36 (19%)
Query: 52 CFFVNSGSEANDLALRLARVHTN-------NDDVIT 80
SGS AN LAL D+VIT
Sbjct: 80 VLTTTSGSSANLLALTALTSPKLGVRALKPGDEVIT 115
>1o69_A Aminotransferase; structural genomics, unknown function; HET:
X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB:
1o62_A 1o61_A*
Length = 394
Score = 27.2 bits (61), Expect = 0.62
Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Query: 55 VNSGSEANDLALRLARVHTNNDDVITQD 82
+NS + A LALR+A V +D V+
Sbjct: 53 LNSATAALHLALRVAGV-KQDDIVLASS 79
>3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl
phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae}
Length = 497
Score = 26.0 bits (57), Expect = 1.5
Identities = 6/36 (16%), Positives = 12/36 (33%), Gaps = 2/36 (5%)
Query: 37 CARKLASLL--PDPLSVCFFVNSGSEANDLALRLAR 70
+ + P + G+E+ LA A+
Sbjct: 112 VVSMVLRMFNAPSDTGCGTTTSGGTESLLLACLSAK 147
>1wu7_A Histidyl-tRNA synthetase; ligase, structural genomics, dimer; 2.40A
{Thermoplasma acidophilum} SCOP: c.51.1.1 d.104.1.1
Length = 434
Score = 25.6 bits (57), Expect = 1.9
Identities = 4/37 (10%), Positives = 12/37 (32%)
Query: 34 LVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLAR 70
+ L ++ +P + G + + +R
Sbjct: 317 ISLLLKRENVQIPREKKSVYICRVGKINSSIMNEYSR 353
>3dr4_A Putative perosamine synthetase; deoxysugar, pyridoxal phosphate,
aspartate aminotransferase, O-antigen; HET: G4M; 1.60A
{Caulobacter crescentus} PDB: 3dr7_A* 3bn1_A*
Length = 391
Score = 25.2 bits (56), Expect = 2.6
Identities = 9/27 (33%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
Query: 55 VNSGSEANDLALRLARVHTNNDDVITQ 81
N+G+ A LAL + D+VI
Sbjct: 77 CNNGTTALHLALVAMGI-GPGDEVIVP 102
>3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct
genomics, joint center for structural genomics, JCSG;
HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987}
Length = 377
Score = 24.8 bits (55), Expect = 3.4
Identities = 3/29 (10%), Positives = 9/29 (31%), Gaps = 1/29 (3%)
Query: 52 CFFVNSGSEANDLALRLARVHTNNDDVIT 80
V + + A++L + +
Sbjct: 56 VTTVANATLGLMAAIQLKKR-KKGKYALM 83
>2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET:
LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A*
Length = 504
Score = 25.0 bits (55), Expect = 3.8
Identities = 6/40 (15%), Positives = 14/40 (35%), Gaps = 2/40 (5%)
Query: 39 RKLASL--LPDPLSVCFFVNSGSEANDLALRLARVHTNND 76
+K+ + F G+ +N ++ AR +
Sbjct: 139 KKMREIVGWSSKDGDGIFSPGGAISNMYSIMAARYKYFPE 178
>1svv_A Threonine aldolase; structural genomics, structural genomics of
pathogenic proto SGPP, protein structure initiative,
PSI; 2.10A {Leishmania major} SCOP: c.67.1.1
Length = 359
Score = 24.9 bits (55), Expect = 3.9
Identities = 9/30 (30%), Positives = 16/30 (53%)
Query: 38 ARKLASLLPDPLSVCFFVNSGSEANDLALR 67
AR + LL P + F++ G++ N +A
Sbjct: 55 ARLIGELLERPDADVHFISGGTQTNLIACS 84
>4e51_A Histidine--tRNA ligase; seattle structural genomics center for
infectious disease, S aminoacylation, tRNA activation,
charged tRNA; HET: HIS; 2.65A {Burkholderia
thailandensis}
Length = 467
Score = 24.9 bits (55), Expect = 4.0
Identities = 5/37 (13%), Positives = 14/37 (37%)
Query: 34 LVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLAR 70
++ ++ + + V+ G A + A +A
Sbjct: 339 ILELLKEEHLVPEQEGVDVYVVHQGDAAREQAFIVAE 375
>2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate
decarboxylase; structural genomics, APC91511.1,
glutamate decarboxylase; HET: MSE; 1.81A {Vibrio
parahaemolyticus}
Length = 497
Score = 24.6 bits (54), Expect = 5.0
Identities = 7/17 (41%), Positives = 12/17 (70%)
Query: 54 FVNSGSEANDLALRLAR 70
F + G+++N + L LAR
Sbjct: 163 FTSGGTQSNQMGLMLAR 179
>2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme,
pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter
freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A
2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A*
Length = 456
Score = 24.3 bits (52), Expect = 5.9
Identities = 3/31 (9%), Positives = 9/31 (29%), Gaps = 3/31 (9%)
Query: 52 CFFVNSGSEANDLALRLARVHTNNDDVITQD 82
+ G A +L ++ + +
Sbjct: 93 IVPTHQGRGAENLLS---QLAIKPGQYVAGN 120
>2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate,
alternative splicing, pyridoxal phosphate (PLP),
structural genomics consortium (SGC); HET: PLP; 1.6A
{Homo sapiens}
Length = 515
Score = 24.3 bits (53), Expect = 6.8
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 54 FVNSGSEANDLALRLAR 70
F GS +N A+ LAR
Sbjct: 170 FCPGGSISNMYAVNLAR 186
>3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal
phosphate; HET: LLP; 2.00A {Symbiobacterium
thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A*
Length = 514
Score = 24.1 bits (52), Expect = 7.1
Identities = 7/38 (18%), Positives = 13/38 (34%), Gaps = 4/38 (10%)
Query: 37 CARKLASLL----PDPLSVCFFVNSGSEANDLALRLAR 70
A +L + G+E+ LA++ R
Sbjct: 144 VVAMTAHMLGGDAAGGTVCGTVTSGGTESLLLAMKTYR 181
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.134 0.409
Gapped
Lambda K H
0.267 0.0782 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,179,353
Number of extensions: 53459
Number of successful extensions: 246
Number of sequences better than 10.0: 1
Number of HSP's gapped: 205
Number of HSP's successfully gapped: 56
Length of query: 83
Length of database: 6,701,793
Length adjustment: 51
Effective length of query: 32
Effective length of database: 5,277,822
Effective search space: 168890304
Effective search space used: 168890304
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (23.3 bits)