RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy6206
(83 letters)
>d2gsaa_ c.67.1.4 (A:) Glutamate-1-semialdehyde aminomutase
(aminotransferase) {Synechococcus sp., strain GR6
[TaxId: 1131]}
Length = 427
Score = 58.7 bits (141), Expect = 1e-12
Identities = 22/79 (27%), Positives = 34/79 (43%), Gaps = 2/79 (2%)
Query: 2 SLPVGHCHPAVVKAACTQLALLNTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEA 61
GH HP V++A + + VL ++ + + + FVNSG+EA
Sbjct: 63 PAICGHAHPEVIEALKVAMEKGTSFGAPCALENVLA--EMVNDAVPSIEMVRFVNSGTEA 120
Query: 62 NDLALRLARVHTNNDDVIT 80
LRL R +T D +I
Sbjct: 121 CMAVLRLMRAYTGRDKIIK 139
>d1ohwa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase,
GABA-aminotransferase {Pig (Sus scrofa) [TaxId: 9823]}
Length = 461
Score = 57.3 bits (137), Expect = 5e-12
Identities = 18/80 (22%), Positives = 33/80 (41%), Gaps = 6/80 (7%)
Query: 2 SLPVGHCHPAVVKAACTQLALLNTNNRFL------HDNLVLCARKLASLLPDPLSVCFFV 55
S+P+G+ HPA+VK + NR + + L S+ P +S +
Sbjct: 64 SIPIGYSHPALVKLVQQPQNVSTFINRPALGILPPENFVEKLRESLLSVAPKGMSQLITM 123
Query: 56 NSGSEANDLALRLARVHTNN 75
GS +N+ A + + +
Sbjct: 124 ACGSCSNENAFKTIFMWYRS 143
>d1zoda1 c.67.1.4 (A:3-433) Dialkylglycine decarboxylase
{Pseudomonas cepacia [TaxId: 292]}
Length = 431
Score = 55.5 bits (132), Expect = 2e-11
Identities = 23/83 (27%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Query: 2 SLPVGHCHPAVVKAACTQLA-LLNTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSE 60
S +GHCHP +V L + + L +V A +LA++ P L +++G+E
Sbjct: 52 SAVLGHCHPEIVSVIGEYAGKLDHLFSEMLSRPVVDLATRLANITPPGLDRALLLSTGAE 111
Query: 61 ANDLALRLARVHTNNDDVITQDQ 83
+N+ A+R+A++ T +++ Q
Sbjct: 112 SNEAAIRMAKLVTGKYEIVGFAQ 134
>d1vefa1 c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine
aminotransferase ArgD {Thermus thermophilus [TaxId:
274]}
Length = 387
Score = 50.9 bits (121), Expect = 9e-10
Identities = 27/83 (32%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
Query: 2 SLPVGHCHPAVVKAACTQLA-LLNTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSE 60
+GH +P VV+A Q L+ R L ++LP L+ F VNSG+E
Sbjct: 48 VANLGHGNPEVVEAVKRQAETLMAMPQTLPTPMRGEFYRTLTAILPPELNRVFPVNSGTE 107
Query: 61 ANDLALRLARVHTNNDDVITQDQ 83
AN+ AL+ AR HT + +
Sbjct: 108 ANEAALKFARAHTGRKKFVAAMR 130
>d2byla1 c.67.1.4 (A:36-439) Ornithine aminotransferase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 404
Score = 44.4 bits (104), Expect = 2e-07
Identities = 21/74 (28%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Query: 2 SLPVGHCHPAVVKAACTQLALLNTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEA 61
++ GHCHP +V A +Q+ L +R ++N++ + + L + V N+G EA
Sbjct: 52 AVNQGHCHPKIVNALKSQVDKLTLTSRAFYNNVLGEYEEYITKLFNYHKVLPM-NTGVEA 110
Query: 62 NDLALRLARVHTNN 75
+ A +LAR
Sbjct: 111 GETACKLARKWGYT 124
>d1v72a1 c.67.1.1 (A:6-350) Phenylserine aldolase PSALD
{Pseudomonas putida [TaxId: 303]}
Length = 345
Score = 42.1 bits (97), Expect = 1e-06
Identities = 13/71 (18%), Positives = 22/71 (30%), Gaps = 2/71 (2%)
Query: 5 VGHCHPAVVKAACTQLALLNTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDL 64
+ P V +A + D L ++ + + F V +G+ AN L
Sbjct: 12 IAGASPEVAQALVK--HSSGQAGPYGTDELTAQVKRKFCEIFERDVEVFLVPTGTAANAL 69
Query: 65 ALRLARVHTNN 75
L N
Sbjct: 70 CLSAMTPPWGN 80
>d1sffa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase,
GABA-aminotransferase {Escherichia coli [TaxId: 562]}
Length = 425
Score = 41.7 bits (97), Expect = 2e-06
Identities = 22/85 (25%), Positives = 33/85 (38%), Gaps = 3/85 (3%)
Query: 2 SLPVGHCHPAVVKAACTQLALLN--TNNRFLHDNLVLCARKLA-SLLPDPLSVCFFVNSG 58
L GH HP VV A QL L+ ++ + + + D V +G
Sbjct: 51 VLNTGHLHPKVVAAVEAQLKKLSHTCFQVLAYEPYLELCEIMNQKVPGDFAKKTLLVTTG 110
Query: 59 SEANDLALRLARVHTNNDDVITQDQ 83
SEA + A+++AR T I
Sbjct: 111 SEAVENAVKIARAATKRSGTIAFSG 135
>d1z7da1 c.67.1.4 (A:7-410) Ornithine aminotransferase {Plasmodium
yoelii yoelii [TaxId: 73239]}
Length = 404
Score = 39.4 bits (91), Expect = 1e-05
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 2 SLPVGHCHPAVVKAACTQLALLNTNNRFLH 31
S+ GHCHP ++ A Q L +R
Sbjct: 50 SVNQGHCHPNILNAMINQAKNLTICSRAFF 79
>d1s0aa_ c.67.1.4 (A:) Adenosylmethionine-8-amino-7-oxononanoate
aminotransferase, BioA {Escherichia coli [TaxId: 562]}
Length = 429
Score = 39.2 bits (90), Expect = 1e-05
Identities = 19/76 (25%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
Query: 2 SLPVGHCHPAVVKAACTQLALLN--TNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGS 59
+ G+ HP + A +Q+ ++ H + RKL ++ P PL F +SGS
Sbjct: 54 AAIHGYNHPQLNAAMKSQIDAMSHVMFGGITHAPAIELCRKLVAMTPQPLECVFLADSGS 113
Query: 60 EANDLALRLARVHTNN 75
A ++A+++A +
Sbjct: 114 VAVEVAMKMALQYWQA 129
>d1svva_ c.67.1.1 (A:) Low-specificity threonine aldolase
{Leishmania major [TaxId: 5664]}
Length = 340
Score = 36.1 bits (81), Expect = 2e-04
Identities = 11/61 (18%), Positives = 24/61 (39%), Gaps = 3/61 (4%)
Query: 8 CHPAVVKAACTQLALLNTNNRFLHDNLVLCAR-KLASLLPDPLSVCFFVNSGSEANDLAL 66
HP ++ + + + D+ A + LL P + F++ G++ N +A
Sbjct: 12 MHPKILDLM--ARDNMTQHAGYGQDSHCAKAARLIGELLERPDADVHFISGGTQTNLIAC 69
Query: 67 R 67
Sbjct: 70 S 70
>d1o69a_ c.67.1.4 (A:) Aminotransferase homolog WlaK (PglE,
Cj1121c) {Campylobacter jejuni [TaxId: 197]}
Length = 374
Score = 33.5 bits (75), Expect = 0.002
Identities = 11/29 (37%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Query: 52 CFFVNSGSEANDLALRLARVHTNNDDVIT 80
+NS + A LALR+A V +D V+
Sbjct: 39 ALALNSATAALHLALRVAGV-KQDDIVLA 66
>d1b9ha_ c.67.1.4 (A:) 3-amino-5-hydroxybenzoic acid synthase
(AHBA synthase) {Amycolatopsis mediterranei [TaxId:
33910]}
Length = 384
Score = 33.2 bits (74), Expect = 0.002
Identities = 9/31 (29%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 52 CFFVNSGSEANDLALRLARVHTNNDDVITQD 82
V +G+ A +LAL++ V +VI
Sbjct: 52 ALAVTNGTHALELALQVMGV-GPGTEVIVPA 81
>d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase)
{Proteus vulgaris [TaxId: 585]}
Length = 465
Score = 32.2 bits (72), Expect = 0.003
Identities = 4/33 (12%), Positives = 8/33 (24%), Gaps = 2/33 (6%)
Query: 38 ARKLASLLPDPLSVCFFVNSGSEANDLALRLAR 70
K L + G A ++ +
Sbjct: 81 KDKAKELFN--YDYIIPAHQGRGAENILFPVLL 111
>d1mdoa_ c.67.1.4 (A:) Aminotransferase ArnB {Salmonella
typhimurium [TaxId: 90371]}
Length = 376
Score = 29.2 bits (64), Expect = 0.048
Identities = 8/32 (25%), Positives = 13/32 (40%), Gaps = 1/32 (3%)
Query: 52 CFFVNSGSEANDLALRLARVHTNNDDVITQDQ 83
V+S + +AL + D+VIT
Sbjct: 49 AVAVSSATAGMHIALMALGI-GEGDEVITPSM 79
>d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase)
{Escherichia coli [TaxId: 562]}
Length = 467
Score = 28.3 bits (62), Expect = 0.094
Identities = 2/21 (9%), Positives = 6/21 (28%)
Query: 52 CFFVNSGSEANDLALRLARVH 72
+ G A + + +
Sbjct: 92 TIPTHQGRGAEQIYIPVLIKK 112
>d2fnua1 c.67.1.4 (A:2-372) Spore coat polysaccharide biosynthesis
protein C {Helicobacter pylori [TaxId: 210]}
Length = 371
Score = 27.8 bits (60), Expect = 0.13
Identities = 5/32 (15%), Positives = 9/32 (28%)
Query: 52 CFFVNSGSEANDLALRLARVHTNNDDVITQDQ 83
NS + A R + + + I
Sbjct: 49 ALVFNSATSALLTLYRNFSEFSADRNEIITTP 80
>d1m6sa_ c.67.1.1 (A:) Low-specificity threonine aldolase
{Thermotoga maritima [TaxId: 2336]}
Length = 343
Score = 27.0 bits (58), Expect = 0.27
Identities = 7/34 (20%), Positives = 11/34 (32%), Gaps = 2/34 (5%)
Query: 39 RKLASLLPDPLSVCFFVNSGSEANDLALRLARVH 72
R A FV SG+ N +++
Sbjct: 41 RLAAETFGKE--AALFVPSGTMGNQVSIMAHTQR 72
>d2bkwa1 c.67.1.3 (A:3-384) Alanine-glyoxylate aminotransferase
{Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 382
Score = 25.1 bits (53), Expect = 1.1
Identities = 6/43 (13%), Positives = 10/43 (23%), Gaps = 1/43 (2%)
Query: 39 RKLASLLPDPLSVCFFVNSGSEANDLALR-LARVHTNNDDVIT 80
S SG+ D+ N +V+
Sbjct: 47 AVFKSAAASKSQPFVLAGSGTLGWDIFASNFILSKAPNKNVLV 89
>d2z0da1 d.3.1.22 (A:5-354) Cysteine protease ATG4B {Human (Homo
sapiens) [TaxId: 9606]}
Length = 350
Score = 25.0 bits (54), Expect = 1.2
Identities = 15/61 (24%), Positives = 29/61 (47%), Gaps = 4/61 (6%)
Query: 15 AACTQLALLNTNNRFLHDNLVLC---ARKLASLLPDP-LSVCFFVNSGSEANDLALRLAR 70
A TQ A+ T+ F+ D C +++ DP ++V FF + + ND ++ +
Sbjct: 275 PATTQPAVEPTDGCFIPDESFHCQHPPCRMSIAELDPSIAVGFFCKTEDDFNDWCQQVKK 334
Query: 71 V 71
+
Sbjct: 335 L 335
>d2e7ja1 c.67.1.9 (A:8-371) Selenocysteinyl-tRNA synthase
(SepSecS) {Archaeoglobus fulgidus [TaxId: 2234]}
Length = 364
Score = 24.8 bits (52), Expect = 1.5
Identities = 3/16 (18%), Positives = 4/16 (25%)
Query: 52 CFFVNSGSEANDLALR 67
N EA +
Sbjct: 65 ARVTNGAREAKFAVMH 80
>d1m32a_ c.67.1.3 (A:) 2-aminoethylphosphonate transaminase
{Salmonella typhimurium [TaxId: 90371]}
Length = 361
Score = 24.4 bits (51), Expect = 2.1
Identities = 8/45 (17%), Positives = 18/45 (40%), Gaps = 2/45 (4%)
Query: 39 RKLASLL--PDPLSVCFFVNSGSEANDLALRLARVHTNNDDVITQ 81
++L +L + + SGS A + L A + +++
Sbjct: 40 QQLTALATASEGYTSVLLQGSGSYAVEAVLGSALGPQDKVLIVSN 84
>d1c7ga_ c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbicola
[TaxId: 549]}
Length = 456
Score = 24.4 bits (52), Expect = 2.3
Identities = 3/31 (9%), Positives = 9/31 (29%), Gaps = 3/31 (9%)
Query: 52 CFFVNSGSEANDLALRLARVHTNNDDVITQD 82
+ G A +L ++ + +
Sbjct: 93 IVPTHQGRGAENLLS---QLAIKPGQYVAGN 120
>d1wj7a1 a.5.2.1 (A:8-98) Ubiquitin-associated protein 2-like
Ubap2l {Mouse (Mus musculus) [TaxId: 10090]}
Length = 91
Score = 22.9 bits (49), Expect = 4.8
Identities = 4/18 (22%), Positives = 14/18 (77%)
Query: 66 LRLARVHTNNDDVITQDQ 83
+RLA++ ++++D +++
Sbjct: 18 IRLAQMISDHNDADFEEK 35
>d1jnya2 b.44.1.1 (A:323-429) Elongation factor eEF-1alpha,
C-terminal domain {Archaeon Sulfolobus solfataricus
[TaxId: 2287]}
Length = 107
Score = 22.6 bits (48), Expect = 6.8
Identities = 7/17 (41%), Positives = 9/17 (52%)
Query: 4 PVGHCHPAVVKAACTQL 20
PV H H A V ++L
Sbjct: 23 PVLHVHTASVACRVSEL 39
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.134 0.409
Gapped
Lambda K H
0.267 0.0552 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 279,435
Number of extensions: 9488
Number of successful extensions: 43
Number of sequences better than 10.0: 1
Number of HSP's gapped: 40
Number of HSP's successfully gapped: 25
Length of query: 83
Length of database: 2,407,596
Length adjustment: 49
Effective length of query: 34
Effective length of database: 1,734,826
Effective search space: 58984084
Effective search space used: 58984084
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 47 (22.3 bits)