BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6207
(823 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2GY5|A Chain A, Tie2 Ligand-Binding Domain Crystal Structure
pdb|2GY7|B Chain B, Angiopoietin-2TIE2 COMPLEX CRYSTAL STRUCTURE
Length = 423
Score = 85.9 bits (211), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 56/148 (37%), Positives = 72/148 (48%), Gaps = 6/148 (4%)
Query: 161 ECPEGHYGPDCKLAC-QCENGAGCDPNTGACDCLDGYMGTHCEEVCGPGRFGQNCSQECQ 219
C +GP+C C C N C +TG C C G+MG CE+ C FG+ C + C
Sbjct: 188 RCEAQKWGPECNHLCTACMNNGVCHEDTGECICPPGFMGRTCEKACELHTFGRTCKERCS 247
Query: 220 ----CRNGAECHPATGECSCQPGFTGSLCEERCPPGTHGPSCINRCRCQNGAICNPANGQ 275
C++ C P CSC G+ G C E C PG +GP C RC C NG +C+ G
Sbjct: 248 GQEGCKSYVFCLPDPYGCSCATGWKGLQCNEACHPGFYGPDCKLRCSCNNGEMCDRFQG- 306
Query: 276 CLCAPGWMGSVCNVPCTPGMWGQGCTVP 303
CLC+PGW G C P M + +P
Sbjct: 307 CLCSPGWQGLQCEREGIPRMTPKIVDLP 334
Score = 81.3 bits (199), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/131 (41%), Positives = 64/131 (48%), Gaps = 6/131 (4%)
Query: 205 CGPGRFGQNCSQEC-QCRNGAECHPATGECSCQPGFTGSLCEERCPPGTHGPSCINRCRC 263
C ++G C+ C C N CH TGEC C PGF G CE+ C T G +C RC
Sbjct: 189 CEAQKWGPECNHLCTACMNNGVCHEDTGECICPPGFMGRTCEKACELHTFGRTCKERCSG 248
Query: 264 QNG----AICNPANGQCLCAPGWMGSVCNVPCTPGMWGQGCTVPCECFNGASCHHVTGEC 319
Q G C P C CA GW G CN C PG +G C + C C NG C G C
Sbjct: 249 QEGCKSYVFCLPDPYGCSCATGWKGLQCNEACHPGFYGPDCKLRCSCNNGEMCDRFQG-C 307
Query: 320 QCEPGFKGQKC 330
C PG++G +C
Sbjct: 308 LCSPGWQGLQC 318
Score = 79.7 bits (195), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 53/142 (37%), Positives = 70/142 (49%), Gaps = 13/142 (9%)
Query: 523 QLCDRPCSEGRYGQNCTQECR-CMNGAACNPQDGTCLCPAGYYGPLCQKRCEFMTYGRNC 581
+L R C ++G C C CMN C+ G C+CP G+ G C+K CE T+GR C
Sbjct: 183 RLIVRRCEAQKWGPECNHLCTACMNNGVCHEDTGECICPPGFMGRTCEKACELHTFGRTC 242
Query: 582 AQACTCFTENSQGCDIVTG------KCICRPGFKGHRCETQCSNPNTYGEDCSLDCGCNN 635
+ C+ +GC C C G+KG +C C +P YG DC L C CNN
Sbjct: 243 KERCS----GQEGCKSYVFCLPDPYGCSCATGWKGLQCNEAC-HPGFYGPDCKLRCSCNN 297
Query: 636 GGTCNQLDGGCNCGRGYQGKLC 657
G C++ GC C G+QG C
Sbjct: 298 GEMCDRFQ-GCLCSPGWQGLQC 318
Score = 69.3 bits (168), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 52/146 (35%), Positives = 63/146 (43%), Gaps = 16/146 (10%)
Query: 60 CPEGTWGKQCVHYCSCPVESMECSRIDGNCSCPPGFRGAKCKERTCPDGLYGEGCDRTCE 119
C WG +C H C+ + + C G C CPPGF G C E+ C +G C C
Sbjct: 189 CEAQKWGPECNHLCTACMNNGVCHEDTGECICPPGFMGRTC-EKACELHTFGRTCKERCS 247
Query: 120 CNV--ENTKLCVPVCTDECIRGTCIAPNTCKCEVGFGGPTCNIECPEGHYGPDCKLACQC 177
++ C+P P C C G+ G CN C G YGPDCKL C C
Sbjct: 248 GQEGCKSYVFCLP------------DPYGCSCATGWKGLQCNEACHPGFYGPDCKLRCSC 295
Query: 178 ENGAGCDPNTGACDCLDGYMGTHCEE 203
NG CD G C C G+ G CE
Sbjct: 296 NNGEMCDRFQG-CLCSPGWQGLQCER 320
Score = 69.3 bits (168), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 53/136 (38%), Positives = 63/136 (46%), Gaps = 8/136 (5%)
Query: 291 CTPGMWGQGCTVPC-ECFNGASCHHVTGECQCEPGFKGQKCMDPCPEGTWGKQCVHYCSC 349
C WG C C C N CH TGEC C PGF G+ C C T+G+ C CS
Sbjct: 189 CEAQKWGPECNHLCTACMNNGVCHEDTGECICPPGFMGRTCEKACELHTFGRTCKERCSG 248
Query: 350 P---VESMECSRIDGNCSCPPGFRGAKCKERTCPDGLYGEGCDRTCECNVENTKLCHAVT 406
+ C CSC G++G +C E C G YG C C CN N ++C
Sbjct: 249 QEGCKSYVFCLPDPYGCSCATGWKGLQCNE-ACHPGFYGPDCKLRCSCN--NGEMCDRFQ 305
Query: 407 GKCECGPGWDGLTCDR 422
G C C PGW GL C+R
Sbjct: 306 G-CLCSPGWQGLQCER 320
Score = 59.7 bits (143), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 48/143 (33%), Positives = 65/143 (45%), Gaps = 7/143 (4%)
Query: 243 LCEERCPPGTHGPSCINRCR-CQNGAICNPANGQCLCAPGWMGSVCNVPCTPGMWGQGCT 301
L RC GP C + C C N +C+ G+C+C PG+MG C C +G+ C
Sbjct: 184 LIVRRCEAQKWGPECNHLCTACMNNGVCHEDTGECICPPGFMGRTCEKACELHTFGRTCK 243
Query: 302 VPCE----CFNGASCHHVTGECQCEPGFKGQKCMDPCPEGTWGKQCVHYCSCPVESMECS 357
C C + C C C G+KG +C + C G +G C CSC M C
Sbjct: 244 ERCSGQEGCKSYVFCLPDPYGCSCATGWKGLQCNEACHPGFYGPDCKLRCSCNNGEM-CD 302
Query: 358 RIDGNCSCPPGFRGAKCKERTCP 380
R G C C PG++G +C+ P
Sbjct: 303 RFQG-CLCSPGWQGLQCEREGIP 324
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 68/144 (47%), Gaps = 10/144 (6%)
Query: 478 RHCEKPCPQGSYGQDCSQTCL-CSKEGSASCSPGSGQCVCRPGGAGQLCDRPCSEGRYGQ 536
R + C +G +C+ C C G C +G+C+C PG G+ C++ C +G+
Sbjct: 183 RLIVRRCEAQKWGPECNHLCTACMNNGV--CHEDTGECICPPGFMGRTCEKACELHTFGR 240
Query: 537 NCTQECR----CMNGAACNPQDGTCLCPAGYYGPLCQKRCEFMTYGRNCAQACTCFTENS 592
C + C C + C P C C G+ G C + C YG +C C+C N
Sbjct: 241 TCKERCSGQEGCKSYVFCLPDPYGCSCATGWKGLQCNEACHPGFYGPDCKLRCSC--NNG 298
Query: 593 QGCDIVTGKCICRPGFKGHRCETQ 616
+ CD G C+C PG++G +CE +
Sbjct: 299 EMCDRFQG-CLCSPGWQGLQCERE 321
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/92 (40%), Positives = 44/92 (47%), Gaps = 5/92 (5%)
Query: 736 RECEERCPPGTHGPSCINRCRCQNG----AICNPANGQCLCAPGWMGSVCNVPCTPGMWG 791
R CE+ C T G +C RC Q G C P C CA GW G CN C PG +G
Sbjct: 227 RTCEKACELHTFGRTCKERCSGQEGCKSYVFCLPDPYGCSCATGWKGLQCNEACHPGFYG 286
Query: 792 QGCTVPCECFNGASCHHVTGECQCEPGFKGQK 823
C + C C NG C G C C PG++G +
Sbjct: 287 PDCKLRCSCNNGEMCDRFQG-CLCSPGWQGLQ 317
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 53/115 (46%), Gaps = 6/115 (5%)
Query: 564 YGPLCQKRCEFMTYGRNCAQACTCFTENSQGCDIVTGKCICRPGFKGHRCETQCSNPNTY 623
+ L +RCE +G C CT N C TG+CIC PGF G CE C +T+
Sbjct: 181 FTRLIVRRCEAQKWGPECNHLCTACMNNGV-CHEDTGECICPPGFMGRTCEKACE-LHTF 238
Query: 624 GEDCSLDC----GCNNGGTCNQLDGGCNCGRGYQGKLCTAPCPEGQYGYNCKEEC 674
G C C GC + C GC+C G++G C C G YG +CK C
Sbjct: 239 GRTCKERCSGQEGCKSYVFCLPDPYGCSCATGWKGLQCNEACHPGFYGPDCKLRC 293
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 47/97 (48%), Gaps = 5/97 (5%)
Query: 477 GRHCEKPCPQGSYGQDCSQTCLCSKEGSAS---CSPGSGQCVCRPGGAGQLCDRPCSEGR 533
GR CEK C ++G+ C + C +EG S C P C C G G C+ C G
Sbjct: 226 GRTCEKACELHTFGRTCKERC-SGQEGCKSYVFCLPDPYGCSCATGWKGLQCNEACHPGF 284
Query: 534 YGQNCTQECRCMNGAACNPQDGTCLCPAGYYGPLCQK 570
YG +C C C NG C+ G CLC G+ G C++
Sbjct: 285 YGPDCKLRCSCNNGEMCDRFQG-CLCSPGWQGLQCER 320
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 737 ECEERCPPGTHGPSCINRCRCQNGAICNPANGQCLCAPGWMGSVCNVPCTPGMWGQGCTV 796
+C E C PG +GP C RC C NG +C+ G CLC+PGW G C P M + +
Sbjct: 275 QCNEACHPGFYGPDCKLRCSCNNGEMCDRFQG-CLCSPGWQGLQCEREGIPRMTPKIVDL 333
Query: 797 P 797
P
Sbjct: 334 P 334
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 63/155 (40%), Gaps = 25/155 (16%)
Query: 377 RTCPDGLYGEGCDRTCECNVENTKLCHAVTGKCECGPGWDGLTCDRPCPITRWGDNCSQH 436
R C +G C+ C + N +CH TG+C C PG+ G TC++ C + +G C +
Sbjct: 187 RRCEAQKWGPECNHLCTACM-NNGVCHEDTGECICPPGFMGRTCEKACELHTFGRTCKER 245
Query: 437 CN----CKNDALCFPRNGTNTYQYXXXXXXXXXXXXXXXXXXXXGRHCEKPCPQGSYGQD 492
C+ CK+ C P + Y G C + C G YG D
Sbjct: 246 CSGQEGCKSYVFCLP----DPY-------------GCSCATGWKGLQCNEACHPGFYGPD 288
Query: 493 CSQTCLCSKEGSASCSPGSGQCVCRPGGAGQLCDR 527
C C C+ C G C+C PG G C+R
Sbjct: 289 CKLRCSCN--NGEMCDRFQG-CLCSPGWQGLQCER 320
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 785 CTPGMWGQGCTVPC-ECFNGASCHHVTGECQCEPGFKGQ 822
C WG C C C N CH TGEC C PGF G+
Sbjct: 189 CEAQKWGPECNHLCTACMNNGVCHEDTGECICPPGFMGR 227
>pdb|2YGQ|A Chain A, Wif Domain-Epidermal Growth Factor (Egf)-Like Domains 1-3
Of Human Wnt Inhibitory Factor 1 In Complex With
1,2-Dipalmitoylphosphatidylcholine
Length = 324
Score = 56.2 bits (134), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 51/136 (37%), Positives = 65/136 (47%), Gaps = 31/136 (22%)
Query: 529 CSEGRYGQNCTQEC---RCMNGAACNPQDGTCLCPAGYYGPLCQKRCEFMTYGRNCAQAC 585
C +G +G +C + RCMNG C G C+CP G+YG C K NC+
Sbjct: 169 CPDGFHGPHCEKALCTPRCMNGGLC-VTPGFCICPPGFYGVNCDKA--------NCST-- 217
Query: 586 TCFTENSQGCDIVTGKCICRPGFKGHRCE-TQCSNPNTYGEDCSLDCGCNNGGTCNQLDG 644
TCF + G GKCIC PG +G +CE ++C P C NGG C
Sbjct: 218 TCF---NGGTCFYPGKCICPPGLEGEQCEISKCPQP------------CRNGGKCIG-KS 261
Query: 645 GCNCGRGYQGKLCTAP 660
C C +GYQG LC+ P
Sbjct: 262 KCKCSKGYQGDLCSKP 277
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 76/179 (42%), Gaps = 52/179 (29%)
Query: 177 CENGAGCDPNTGACDCLDGYMGTHCEE-------------------VCGPGRFGQNCSQ- 216
C NG C+ C+C DG+ G HCE+ +C PG +G NC +
Sbjct: 155 CRNGGFCNERR-ICECPDGFHGPHCEKALCTPRCMNGGLCVTPGFCICPPGFYGVNCDKA 213
Query: 217 --ECQCRNGAECHPATGECSCQPGFTGSLCE-ERCP-PGTHGPSCINRCRCQNGAICNPA 272
C NG C G+C C PG G CE +CP P +G CI + +C+
Sbjct: 214 NCSTTCFNGGTCF-YPGKCICPPGLEGEQCEISKCPQPCRNGGKCIGKSKCK-------- 264
Query: 273 NGQCLCAPGWMGSVCNVP-CTPGMWGQGCTVPCECFNGASCHHVTGECQCEPGFKGQKC 330
C+ G+ G +C+ P C PG G +CH +CQC+ G+ G+ C
Sbjct: 265 -----CSKGYQGDLCSKPVCEPGCGAHG-----------TCHE-PNKCQCQEGWHGRHC 306
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 45/91 (49%), Gaps = 17/91 (18%)
Query: 736 RECEERCPPGTHGPSCINRC---RCQNGAICNPANGQCLCAPGWMGSVCNVPCTPGMWGQ 792
R CE CP G HGP C RC NG +C G C+C PG+ G C+
Sbjct: 165 RICE--CPDGFHGPHCEKALCTPRCMNGGLC-VTPGFCICPPGFYGVNCD--------KA 213
Query: 793 GCTVPCECFNGASCHHVTGECQCEPGFKGQK 823
C+ CFNG +C + G+C C PG +G++
Sbjct: 214 NCST--TCFNGGTCFY-PGKCICPPGLEGEQ 241
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 63/180 (35%), Gaps = 58/180 (32%)
Query: 89 CSCPPGFRGAKCKER------------------TCPDGLYGEGCDRTCECNVENTKLCVP 130
C CP GF G C++ CP G YG CD+
Sbjct: 167 CECPDGFHGPHCEKALCTPRCMNGGLCVTPGFCICPPGFYGVNCDKA------------- 213
Query: 131 VCTDECIRG-TCIAPNTCKCEVGFGGPTCNI-ECPEGHYGPDCKLACQCENGAGCDPNTG 188
C+ C G TC P C C G G C I +CP+ C NG C +
Sbjct: 214 NCSTTCFNGGTCFYPGKCICPPGLEGEQCEISKCPQ-----------PCRNGGKCIGKS- 261
Query: 189 ACDCLDGYMGTHCEE-VCGPGRFGQNCSQECQCRNGAECHPATGECSCQPGFTGSLCEER 247
C C GY G C + VC PG C CH +C CQ G+ G C +R
Sbjct: 262 KCKCSKGYQGDLCSKPVCEPG-----------CGAHGTCHEPN-KCQCQEGWHGRHCNKR 309
Score = 35.8 bits (81), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 51/163 (31%), Positives = 63/163 (38%), Gaps = 31/163 (19%)
Query: 14 GTCIAPNTCKCEVGFGGPTCNIAKDAKTKPTDTYTFRLMFPQCMD----------PCPEG 63
G C C+C GF GP C A L P+CM+ CP G
Sbjct: 159 GFCNERRICECPDGFHGPHCEKA--------------LCTPRCMNGGLCVTPGFCICPPG 204
Query: 64 TWGKQCVHY-CSCPVESMECSRIDGNCSCPPGFRGAKCKERTCPDGLYGEGC---DRTCE 119
+G C CS + G C CPPG G +C+ CP G C+
Sbjct: 205 FYGVNCDKANCSTTCFNGGTCFYPGKCICPPGLEGEQCEISKCPQPCRNGGKCIGKSKCK 264
Query: 120 CNV-ENTKLCV-PVCTDEC-IRGTCIAPNTCKCEVGFGGPTCN 159
C+ LC PVC C GTC PN C+C+ G+ G CN
Sbjct: 265 CSKGYQGDLCSKPVCEPGCGAHGTCHEPNKCQCQEGWHGRHCN 307
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 53/208 (25%), Positives = 67/208 (32%), Gaps = 83/208 (39%)
Query: 241 GSLCEER----CPPGTHGPSCINRC---RCQNGAICNPANGQCLCAPGWMGSVCNVPCTP 293
G C ER CP G HGP C RC NG +C G C+C PG+ G C+
Sbjct: 158 GGFCNERRICECPDGFHGPHCEKALCTPRCMNGGLC-VTPGFCICPPGFYGVNCD----- 211
Query: 294 GMWGQGCTVPCECFNGASCHHVTGECQCEPGFKGQKCMDPCPEGTWGKQCVHYCSCPVES 353
C+ CFNG +C +
Sbjct: 212 ---KANCST--TCFNGGTCFY--------------------------------------- 227
Query: 354 MECSRIDGNCSCPPGFRGAKCKERTCPD------------------GLYGEGCDR-TCEC 394
G C CPPG G +C+ CP G G+ C + CE
Sbjct: 228 ------PGKCICPPGLEGEQCEISKCPQPCRNGGKCIGKSKCKCSKGYQGDLCSKPVCEP 281
Query: 395 NVENTKLCHAVTGKCECGPGWDGLTCDR 422
CH KC+C GW G C++
Sbjct: 282 GCGAHGTCHE-PNKCQCQEGWHGRHCNK 308
Score = 34.7 bits (78), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 72/183 (39%), Gaps = 44/183 (24%)
Query: 478 RHCEKPCPQGSYGQDCSQTCLCS---KEGSASCSPGSGQCVCRPGGAGQLCDRPCSEGRY 534
R CE CP G +G C + LC+ G +PG C+C PG G CD+
Sbjct: 165 RICE--CPDGFHGPHCEKA-LCTPRCMNGGLCVTPGF--CICPPGFYGVNCDK------- 212
Query: 535 GQNCTQECRCMNGAACNPQDGTCLCPAGYYGPLCQKRCEFMTYGRNCAQACTCFTENSQG 594
NC+ C NG C G C+CP G G C+ C Q C N
Sbjct: 213 -ANCST--TCFNGGTCF-YPGKCICPPGLEGEQCEI--------SKCPQPC----RNGGK 256
Query: 595 CDIVTGKCICRPGFKGHRCETQCSNPNTYGEDCSLDCGCNNGGTCNQLDGGCNCGRGYQG 654
C I KC C G++G C P GC GTC++ + C C G+ G
Sbjct: 257 C-IGKSKCKCSKGYQGDLCSKPVCEP-----------GCGAHGTCHEPN-KCQCQEGWHG 303
Query: 655 KLC 657
+ C
Sbjct: 304 RHC 306
>pdb|2VJ2|A Chain A, Human Jagged-1, Domains Dsl And Egfs1-3
pdb|2VJ2|B Chain B, Human Jagged-1, Domains Dsl And Egfs1-3
Length = 169
Score = 37.4 bits (85), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 72/178 (40%), Gaps = 36/178 (20%)
Query: 160 IECPEGHYGPDCKLACQCENG----AGCDPNTGACDCLDGYMGTHCEEVCGPGRFGQNCS 215
+ C + +YG C C+ + CD N G C++G+MG C C
Sbjct: 19 VTCDDYYYGFGCNKFCRPRDDFFGHYACDQN-GNKTCMEGWMGPECNRAI--------CR 69
Query: 216 QECQCRNGAECHPATGECSCQPGFTGSLCEERCPPGTHGPSCINRCRCQNGAICNPANGQ 275
Q C ++G+ P G+C CQ G+ G C++ P P C++ ICN Q
Sbjct: 70 QGCSPKHGSCKLP--GDCRCQYGWQGLYCDKCIPH----PGCVH-------GICNEP-WQ 115
Query: 276 CLCAPGWMGSVCNVPCTPGMWGQGCTVPCECFNGASCHHV---TGECQCEPGFKGQKC 330
CLC W G +C+ C C NG +C + +C C G+ G C
Sbjct: 116 CLCETNWGGQLCDKDLNY------CGTHQPCLNGGTCSNTGPDKYQCSCPEGYSGPNC 167
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 9/60 (15%)
Query: 513 QCVCRPGGAGQLCDRPCSEGRYGQNCTQECRCMNGAACN---PQDGTCLCPAGYYGPLCQ 569
QC+C GQLCD+ + C C+NG C+ P C CP GY GP C+
Sbjct: 115 QCLCETNWGGQLCDKDLNY------CGTHQPCLNGGTCSNTGPDKYQCSCPEGYSGPNCE 168
Score = 30.4 bits (67), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 49/131 (37%), Gaps = 25/131 (19%)
Query: 86 DGNCSCPPGFRGAKCKERTCPDG---------LYGEGCDRTCECNVENTKLCVPVCTDE- 135
+GN +C G+ G +C C G L G+ C C L C
Sbjct: 49 NGNKTCMEGWMGPECNRAICRQGCSPKHGSCKLPGD-----CRCQYGWQGLYCDKCIPHP 103
Query: 136 -CIRGTCIAPNTCKCEVGFGGPTCNIECPEGHYGPDCKLACQCENGAGCD---PNTGACD 191
C+ G C P C CE +GG C+ + C C NG C P+ C
Sbjct: 104 GCVHGICNEPWQCLCETNWGGQLCDKDLNY------CGTHQPCLNGGTCSNTGPDKYQCS 157
Query: 192 CLDGYMGTHCE 202
C +GY G +CE
Sbjct: 158 CPEGYSGPNCE 168
>pdb|2P28|B Chain B, Structure Of The Phe2 And Phe3 Fragments Of The Integrin
Beta2 Subunit
Length = 217
Score = 35.8 bits (81), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 54/128 (42%), Gaps = 20/128 (15%)
Query: 219 QCRNGAECHPAT----GECSCQPGFTGSLCEERCPPGTHGPSCINRCRCQNGAICNPANG 274
Q R+ + CH G C C G+ G CE + G CR N +I G
Sbjct: 91 QSRDRSLCHGKGFLECGICRCDTGYIGKNCECQ-TQGRSSQELEGSCRKDNNSIICSGLG 149
Query: 275 QCLCAPGWMGSVCNVPCTPG--MWGQGC---TVPCECFNGASCHH------VTGECQCEP 323
C+C +C+ PG ++GQ C T+ CE +NG C G+C+C P
Sbjct: 150 DCVCGQ----CLCHTSDVPGKLIYGQYCECDTINCERYNGQVCGGPGRGLCFCGKCRCHP 205
Query: 324 GFKGQKCM 331
GF+G C
Sbjct: 206 GFEGSACQ 213
>pdb|2VJ3|A Chain A, Human Notch-1 Egfs 11-13
Length = 135
Score = 34.7 bits (78), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 43/106 (40%), Gaps = 24/106 (22%)
Query: 147 CKCEVGFGGPTCNIECPEGHYGPDCKLACQCENGAGCDPNTGA--CDCLDGYMGTHCEEV 204
C+C G+ GP C I+ E P C+N A C G C C+ GY G HCE
Sbjct: 30 CQCLQGYTGPRCEIDVNECVSNP-------CQNDATCLDQIGEFQCICMPGYEGVHCEVN 82
Query: 205 CGPGRFGQNCSQECQ---CRNGAECHPATGE--CSCQPGFTGSLCE 245
+ EC C + C E C C GFTG LC+
Sbjct: 83 ----------TDECASSPCLHNGRCLDKINEFQCECPTGFTGHLCQ 118
Score = 34.3 bits (77), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 48/126 (38%), Gaps = 16/126 (12%)
Query: 177 CENGAGCDPNTGA--CDCLDGYMGTHCEEVCGPGRFGQNCSQECQCRNGAECHPATGE-- 232
CE+ C G+ C CL GY G CE N C+N A C GE
Sbjct: 15 CEHAGKCINTLGSFECQCLQGYTGPRCE-------IDVNECVSNPCQNDATCLDQIGEFQ 67
Query: 233 CSCQPGFTGSLCEERCPPGTHGPSCINRCRCQNGAICNPANGQCLCAPGWMGSVCNVPCT 292
C C PG+ G CE P C++ RC + QC C G+ G +C V
Sbjct: 68 CICMPGYEGVHCEVNTDECASSP-CLHNGRCLDKI----NEFQCECPTGFTGHLCQVDLH 122
Query: 293 PGMWGQ 298
+ Q
Sbjct: 123 HILDAQ 128
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 42/117 (35%), Gaps = 20/117 (17%)
Query: 220 CRNGAECHPATG--ECSCQPGFTGSLCEERCPPGTHGPSCINRCRCQNGAICNPANG--Q 275
C + +C G EC C G+TG CE P CQN A C G Q
Sbjct: 15 CEHAGKCINTLGSFECQCLQGYTGPRCEIDVNECVSNP-------CQNDATCLDQIGEFQ 67
Query: 276 CLCAPGWMGSVCNVPCTPGMWGQGCTVPCECFNGASCHHVTGECQCE--PGFKGQKC 330
C+C PG+ G C V C + C E QCE GF G C
Sbjct: 68 CICMPGYEGVHCEVNTDE-------CASSPCLHNGRCLDKINEFQCECPTGFTGHLC 117
>pdb|1TOZ|A Chain A, Nmr Structure Of The Human Notch-1 Ligand Binding Region
Length = 116
Score = 33.9 bits (76), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 43/106 (40%), Gaps = 24/106 (22%)
Query: 147 CKCEVGFGGPTCNIECPEGHYGPDCKLACQCENGAGCDPNTGA--CDCLDGYMGTHCEEV 204
C+C G+ GP C I+ E P C+N A C G C C+ GY G HCE
Sbjct: 28 CQCLQGYTGPRCEIDVNECVSNP-------CQNDATCLDQIGEFQCICMPGYEGVHCEVN 80
Query: 205 CGPGRFGQNCSQECQ---CRNGAECHPATGE--CSCQPGFTGSLCE 245
+ EC C + C E C C GFTG LC+
Sbjct: 81 ----------TDECASSPCLHNGRCLDKINEFQCECPTGFTGHLCQ 116
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 45/118 (38%), Gaps = 20/118 (16%)
Query: 220 CRNGAECHPATG--ECSCQPGFTGSLCEERCPPGTHGPSCINRCRCQNGAICNPANG--Q 275
C + +C G EC C G+TG CE P CQN A C G Q
Sbjct: 13 CEHAGKCINTLGSFECQCLQGYTGPRCEIDVNECVSNP-------CQNDATCLDQIGEFQ 65
Query: 276 CLCAPGWMGSVCNVPCTPGMWGQGCTVPCECFNGASCHHVTGECQCE--PGFKGQKCM 331
C+C PG+ G C V + + P C + C E QCE GF G C
Sbjct: 66 CICMPGYEGVHCEVN-----TDECASSP--CLHNGRCLDKINEFQCECPTGFTGHLCQ 116
>pdb|2WFT|A Chain A, Crystal Structure Of The Human Hip Ectodomain
pdb|2WFT|B Chain B, Crystal Structure Of The Human Hip Ectodomain
Length = 458
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 39/80 (48%), Gaps = 17/80 (21%)
Query: 211 GQNCSQECQ--CRNGAECHPATGECSCQPGFTGSLCE-ERCPPGTHGPSCINRCRCQNGA 267
Q + EC CRNG C P TG+C C PG+ G C +C P C++G
Sbjct: 388 AQTLTSECSRLCRNGY-CTP-TGKCCCSPGWEGDFCRTAKCEPA-----------CRHGG 434
Query: 268 ICNPANGQCLCAPGWMGSVC 287
+C N +CLC G++G C
Sbjct: 435 VCVRPN-KCLCKKGYLGPQC 453
>pdb|3HO4|A Chain A, Crystal Structure Of Hedgehog-Interacting Protein (Hhip)
pdb|3HO4|B Chain B, Crystal Structure Of Hedgehog-Interacting Protein (Hhip)
Length = 481
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 39/80 (48%), Gaps = 17/80 (21%)
Query: 211 GQNCSQECQ--CRNGAECHPATGECSCQPGFTGSLCE-ERCPPGTHGPSCINRCRCQNGA 267
Q + EC CRNG C P TG+C C PG+ G C +C P C++G
Sbjct: 409 AQTLTSECSRLCRNGY-CTP-TGKCCCSPGWEGDFCRTAKCEPA-----------CRHGG 455
Query: 268 ICNPANGQCLCAPGWMGSVC 287
+C N +CLC G++G C
Sbjct: 456 VCVRPN-KCLCKKGYLGPQC 474
>pdb|2WG3|C Chain C, Crystal Structure Of The Complex Between Human Hedgehog-
Interacting Protein Hip And Desert Hedgehog Without
Calcium
pdb|2WG3|D Chain D, Crystal Structure Of The Complex Between Human Hedgehog-
Interacting Protein Hip And Desert Hedgehog Without
Calcium
Length = 463
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 39/80 (48%), Gaps = 17/80 (21%)
Query: 211 GQNCSQECQ--CRNGAECHPATGECSCQPGFTGSLCE-ERCPPGTHGPSCINRCRCQNGA 267
Q + EC CRNG C P TG+C C PG+ G C +C P C++G
Sbjct: 388 AQTLTSECSRLCRNGY-CTP-TGKCCCSPGWEGDFCRTAKCEPA-----------CRHGG 434
Query: 268 ICNPANGQCLCAPGWMGSVC 287
+C N +CLC G++G C
Sbjct: 435 VCVRPN-KCLCKKGYLGPQC 453
>pdb|2WFX|B Chain B, Crystal Structure Of The Complex Between Human Hedgehog-
Interacting Protein Hip And Sonic Hedgehog In The
Presence Of Calcium
pdb|2WG4|B Chain B, Crystal Structure Of The Complex Between Human Hedgehog-
Interacting Protein Hip And Sonic Hedgehog Without
Calcium
Length = 457
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 39/80 (48%), Gaps = 17/80 (21%)
Query: 211 GQNCSQECQ--CRNGAECHPATGECSCQPGFTGSLCE-ERCPPGTHGPSCINRCRCQNGA 267
Q + EC CRNG C P TG+C C PG+ G C +C P C++G
Sbjct: 388 AQTLTSECSRLCRNGY-CTP-TGKCCCSPGWEGDFCRTAKCEPA-----------CRHGG 434
Query: 268 ICNPANGQCLCAPGWMGSVC 287
+C N +CLC G++G C
Sbjct: 435 VCVRPN-KCLCKKGYLGPQC 453
>pdb|3HO3|A Chain A, Crystal Structure Of Hedgehog-interacting Protein (hhip)
pdb|3HO5|A Chain A, Crystal Structure Of Hedgehog-interacting Protein (hhip)
And Sonic Hedgehog (shh) Complex
pdb|3HO5|B Chain B, Crystal Structure Of Hedgehog-interacting Protein (hhip)
And Sonic Hedgehog (shh) Complex
Length = 481
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 39/80 (48%), Gaps = 17/80 (21%)
Query: 211 GQNCSQECQ--CRNGAECHPATGECSCQPGFTGSLCE-ERCPPGTHGPSCINRCRCQNGA 267
Q + EC CRNG C P TG+C C PG+ G C +C P C++G
Sbjct: 409 AQTLTSECSRLCRNGY-CTP-TGKCCCSPGWEGDFCRTAKCEPA-----------CRHGG 455
Query: 268 ICNPANGQCLCAPGWMGSVC 287
+C N +CLC G++G C
Sbjct: 456 VCVRPN-KCLCKKGYLGPQC 474
>pdb|3ZYJ|B Chain B, Netring1 In Complex With Ngl1
pdb|3ZYJ|D Chain D, Netring1 In Complex With Ngl1
Length = 426
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 33/69 (47%), Gaps = 8/69 (11%)
Query: 508 SPGSGQCVCRPGGAGQLCDRPCSEGRYGQNC--TQECRCMNGAACNPQDGTCLCPAGYYG 565
SPGS + P GA C S G N + C NG C+ + CLCPA Y G
Sbjct: 339 SPGSYLPI--PKGAANACIPSISS--IGTNVCDNELLHCQNGGTCH-NNVRCLCPAAYTG 393
Query: 566 PLCQK-RCE 573
LC+K RCE
Sbjct: 394 ILCEKLRCE 402
>pdb|3K6S|B Chain B, Structure Of Integrin Alphaxbeta2 Ectodomain
pdb|3K6S|D Chain D, Structure Of Integrin Alphaxbeta2 Ectodomain
pdb|3K6S|F Chain F, Structure Of Integrin Alphaxbeta2 Ectodomain
pdb|3K6S|H Chain H, Structure Of Integrin Alphaxbeta2 Ectodomain
pdb|3K71|B Chain B, Structure Of Integrin Alphax Beta2 Ectodomain
pdb|3K71|D Chain D, Structure Of Integrin Alphax Beta2 Ectodomain
pdb|3K71|F Chain F, Structure Of Integrin Alphax Beta2 Ectodomain
pdb|3K71|H Chain H, Structure Of Integrin Alphax Beta2 Ectodomain
pdb|3K72|B Chain B, Structure Of Integrin Alphax Beta2
pdb|3K72|D Chain D, Structure Of Integrin Alphax Beta2
Length = 687
Score = 30.8 bits (68), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 58/133 (43%), Gaps = 18/133 (13%)
Query: 146 TCKCEVGFGGPTCNIECPEGHYGPDCKLACQCENGAGCDPNTGACDCLDGYMGTHCEEVC 205
C+C+ G+ G C + +G + + +C+ +N + G C C G H +V
Sbjct: 447 ICRCDTGYIGKNCECQT-QGRSSQELEGSCRKDNNSIICSGLGDCVC--GQCLCHTSDVP 503
Query: 206 GPGRFGQNC---SQECQCRNGAECH-PATG-----ECSCQPGFTGSLCE-ERCPPGTHGP 255
G +GQ C + C+ NG C P G +C C PGF GS C+ ER G P
Sbjct: 504 GKLIYGQYCECDTINCERYNGQVCGGPGRGLCFCGKCRCHPGFEGSACQCERTTEGCLNP 563
Query: 256 SCIN-----RCRC 263
+ RCRC
Sbjct: 564 RRVECSGRGRCRC 576
>pdb|1HRE|A Chain A, Solution Structure Of The Epidermal Growth Factor-Like
Domain Of Heregulin-Alpha, A Ligand For P180erb4
pdb|1HRF|A Chain A, Solution Structure Of The Epidermal Growth Factor-Like
Domain Of Heregulin-Alpha, A Ligand For P180erb4
Length = 67
Score = 30.4 bits (67), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 20/37 (54%), Gaps = 7/37 (18%)
Query: 220 CRNGAEC-------HPATGECSCQPGFTGSLCEERCP 249
C NG EC +P+ C CQPGFTG+ C E P
Sbjct: 16 CVNGGECFMVKDLSNPSRYLCKCQPGFTGARCTENVP 52
>pdb|1HAE|A Chain A, Heregulin-Alpha Epidermal Growth Factor-Like Domain, Nmr,
20 Structures
pdb|1HAF|A Chain A, Heregulin-Alpha Epidermal Growth Factor-Like Domain, Nmr,
Minimized Average Structure
Length = 63
Score = 30.4 bits (67), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 20/37 (54%), Gaps = 7/37 (18%)
Query: 220 CRNGAEC-------HPATGECSCQPGFTGSLCEERCP 249
C NG EC +P+ C CQPGFTG+ C E P
Sbjct: 14 CVNGGECFMVKDLSNPSRYLCKCQPGFTGARCTENVP 50
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.141 0.527
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,120,478
Number of Sequences: 62578
Number of extensions: 1439697
Number of successful extensions: 3767
Number of sequences better than 100.0: 162
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 140
Number of HSP's that attempted gapping in prelim test: 2429
Number of HSP's gapped (non-prelim): 1123
length of query: 823
length of database: 14,973,337
effective HSP length: 107
effective length of query: 716
effective length of database: 8,277,491
effective search space: 5926683556
effective search space used: 5926683556
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)