RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy6207
(823 letters)
>gnl|CDD|215680 pfam00053, Laminin_EGF, Laminin EGF-like (Domains III and V). This
family is like pfam00008 but has 8 conserved cysteines
instead of six.
Length = 49
Score = 31.2 bits (71), Expect = 0.17
Identities = 16/41 (39%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 180 GAGCDPNTGACDCLDGYMGTHCEEVCGPGRFGQNCSQECQC 220
CDP TG C C G G HC+ C PG +G C
Sbjct: 10 SDTCDPETGQCLCKPGVTGRHCDR-CKPGYYGLPSDPGQGC 49
Score = 30.4 bits (69), Expect = 0.36
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Query: 223 GAECHPATGECSCQPGFTGSLCEERCPPGTHGPSCINRCRC 263
C P TG+C C+PG TG C +RC PG +G C
Sbjct: 10 SDTCDPETGQCLCKPGVTGRHC-DRCKPGYYGLPSDPGQGC 49
Score = 28.1 bits (63), Expect = 1.9
Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 504 SASCSPGSGQCVCRPGGAGQLCDRPCSEGRYGQNCTQECRC 544
S +C P +GQC+C+PG G+ CDR C G YG C
Sbjct: 10 SDTCDPETGQCLCKPGVTGRHCDR-CKPGYYGLPSDPGQGC 49
Score = 26.5 bits (59), Expect = 7.5
Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Query: 309 GASCHHVTGECQCEPGFKGQKCMDPCPEGTWGKQCVHYCSC 349
+C TG+C C+PG G+ C D C G +G C
Sbjct: 10 SDTCDPETGQCLCKPGVTGRHC-DRCKPGYYGLPSDPGQGC 49
Score = 26.5 bits (59), Expect = 7.6
Identities = 16/41 (39%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Query: 266 GAICNPANGQCLCAPGWMGSVCNVPCTPGMWGQGCTVPCEC 306
C+P GQCLC PG G C+ C PG +G C
Sbjct: 10 SDTCDPETGQCLCKPGVTGRHCDR-CKPGYYGLPSDPGQGC 49
Score = 26.5 bits (59), Expect = 7.6
Identities = 16/41 (39%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Query: 760 GAICNPANGQCLCAPGWMGSVCNVPCTPGMWGQGCTVPCEC 800
C+P GQCLC PG G C+ C PG +G C
Sbjct: 10 SDTCDPETGQCLCKPGVTGRHCDR-CKPGYYGLPSDPGQGC 49
Score = 26.5 bits (59), Expect = 8.2
Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Query: 592 SQGCDIVTGKCICRPGFKGHRCETQCSNPNTYGEDCSLDCGC 633
S CD TG+C+C+PG G C+ +C P YG GC
Sbjct: 10 SDTCDPETGQCLCKPGVTGRHCD-RCK-PGYYGLPSDPGQGC 49
>gnl|CDD|238012 cd00055, EGF_Lam, Laminin-type epidermal growth factor-like domain;
laminins are the major noncollagenous components of
basement membranes that mediate cell adhesion, growth
migration, and differentiation; the laminin-type
epidermal growth factor-like module occurs in tandem
arrays; the domain contains 4 disulfide bonds (loops
a-d) the first three resemble epidermal growth factor
(EGF); the number of copies of this domain in the
different forms of laminins is highly variable ranging
from 3 up to 22 copies.
Length = 50
Score = 30.0 bits (68), Expect = 0.38
Identities = 21/41 (51%), Positives = 26/41 (63%), Gaps = 3/41 (7%)
Query: 497 CLCSKEGSAS--CSPGSGQCVCRPGGAGQLCDRPCSEGRYG 535
C C+ GS S C PG+GQC C+P G+ CDR C+ G YG
Sbjct: 2 CDCNGHGSLSGQCDPGTGQCECKPNTTGRRCDR-CAPGYYG 41
Score = 30.0 bits (68), Expect = 0.38
Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 5/43 (11%)
Query: 218 CQCRNGA----ECHPATGECSCQPGFTGSLCEERCPPGTHGPS 256
C C +C P TG+C C+P TG C +RC PG +G
Sbjct: 2 CDCNGHGSLSGQCDPGTGQCECKPNTTGRRC-DRCAPGYYGLP 43
Score = 28.1 bits (63), Expect = 2.0
Identities = 15/42 (35%), Positives = 18/42 (42%), Gaps = 5/42 (11%)
Query: 174 ACQCENGA----GCDPNTGACDCLDGYMGTHCEEVCGPGRFG 211
C C CDP TG C+C G C+ C PG +G
Sbjct: 1 PCDCNGHGSLSGQCDPGTGQCECKPNTTGRRCDR-CAPGYYG 41
Score = 27.7 bits (62), Expect = 2.9
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 5/42 (11%)
Query: 303 PCECFNGAS----CHHVTGECQCEPGFKGQKCMDPCPEGTWG 340
PC+C S C TG+C+C+P G++C D C G +G
Sbjct: 1 PCDCNGHGSLSGQCDPGTGQCECKPNTTGRRC-DRCAPGYYG 41
>gnl|CDD|215637 PLN03223, PLN03223, Polycystin cation channel protein; Provisional.
Length = 1634
Score = 33.8 bits (77), Expect = 0.50
Identities = 14/38 (36%), Positives = 16/38 (42%), Gaps = 2/38 (5%)
Query: 114 CDRTCECNVENTKLCVPVCTDECIRGTCIAPNTCKCEV 151
C+ C KLC +C EC R C A C CE
Sbjct: 682 CEEPCLRQFRFQKLCNTIC--ECGRQGCAAGEYCVCEA 717
>gnl|CDD|214543 smart00180, EGF_Lam, Laminin-type epidermal growth factor-like
domai.
Length = 46
Score = 29.6 bits (67), Expect = 0.57
Identities = 21/44 (47%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
Query: 497 CLCSKEGSAS--CSPGSGQCVCRPGGAGQLCDRPCSEGRYGQNC 538
C C GSAS C P +GQC C+P G+ CDR C+ G YG
Sbjct: 1 CDCDPGGSASGTCDPDTGQCECKPNVTGRRCDR-CAPGYYGDGP 43
Score = 27.7 bits (62), Expect = 2.7
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 225 ECHPATGECSCQPGFTGSLCEERCPPGTHGPSC 257
C P TG+C C+P TG C +RC PG +G
Sbjct: 12 TCDPDTGQCECKPNVTGRRC-DRCAPGYYGDGP 43
Score = 27.3 bits (61), Expect = 3.6
Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 183 CDPNTGACDCLDGYMGTHCEEVCGPGRFGQNC 214
CDP+TG C+C G C+ C PG +G
Sbjct: 13 CDPDTGQCECKPNVTGRRCDR-CAPGYYGDGP 43
>gnl|CDD|131814 TIGR02767, TraG-Ti, Ti-type conjugative transfer system protein
TraG. This protein is found in the Agrobacterium
tumefaciens Ti plasmid tra region responsible for
conjugative transfer of the entire plasmid among
Agrobacterium strains. The protein is distantly related
to the F-type conjugation system TraG protein. Both of
these systems are examples of type IV secretion systems.
Length = 623
Score = 31.8 bits (72), Expect = 1.6
Identities = 12/45 (26%), Positives = 16/45 (35%), Gaps = 6/45 (13%)
Query: 271 PANGQCLCAPGW---MGSVCNVPCTPG---MWGQGCTVPCECFNG 309
P G + + SV +P P WG G P F+G
Sbjct: 163 PERGGIVIGERYRVDRDSVAAMPFRPDDRQTWGAGGKAPLLTFDG 207
Score = 31.8 bits (72), Expect = 1.6
Identities = 12/45 (26%), Positives = 16/45 (35%), Gaps = 6/45 (13%)
Query: 765 PANGQCLCAPGW---MGSVCNVPCTPG---MWGQGCTVPCECFNG 803
P G + + SV +P P WG G P F+G
Sbjct: 163 PERGGIVIGERYRVDRDSVAAMPFRPDDRQTWGAGGKAPLLTFDG 207
>gnl|CDD|219677 pfam07974, EGF_2, EGF-like domain. This family contains EGF
domains found in a variety of extracellular proteins.
Length = 31
Score = 27.0 bits (60), Expect = 3.1
Identities = 15/31 (48%), Positives = 16/31 (51%)
Query: 627 CSLDCGCNNGGTCNQLDGGCNCGRGYQGKLC 657
CS CN GTC + G C C GYQG C
Sbjct: 1 CSASGICNGRGTCVRPCGKCVCDSGYQGATC 31
>gnl|CDD|107364 cd06369, PBP1_GC_C_enterotoxin_receptor, Ligand-binding domain of
the membrane guanylyl cyclase C. Ligand-binding domain
of the membrane guanylyl cyclase C (GC-C or StaR). StaR
is a key receptor for the STa (Escherichia coli Heat
Stable enterotoxin), a potent stimulant of intestinal
chloride and bicarbonate secretion that cause acute
secretory diarrhea. The catalytic domain of the
STa/guanylin receptor type membrane GC is highly similar
to those of the natriuretic peptide receptor (NPR) type
and sensory organ-specific type membrane GCs (GC-D, GC-E
and GC-F). The GC-C receptor is mainly expressed in the
intestine of most vertebrates, but is also found in the
kidney and other organs. Moreover, GC-C is activated by
guanylin and uroguanylin, endogenous peptide ligands
synthesized in the intestine and kidney. Consequently,
the receptor activation results in increased cGMP levels
and phosphorylation of the CFTR chloride channel and
secretion.
Length = 380
Score = 30.0 bits (68), Expect = 5.9
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
Query: 683 VRTAVSHALKVHMGINARRYVNVRMVATF---NTTLY 716
V+ AV A+++ A +NV + A F NT+LY
Sbjct: 20 VKEAVEEAIEIVAERLAEAGLNVTVNANFEGFNTSLY 56
>gnl|CDD|238011 cd00054, EGF_CA, Calcium-binding EGF-like domain, present in a
large number of membrane-bound and extracellular (mostly
animal) proteins. Many of these proteins require calcium
for their biological function and calcium-binding sites
have been found to be located at the N-terminus of
particular EGF-like domains; calcium-binding may be
crucial for numerous protein-protein interactions. Six
conserved core cysteines form three disulfide bridges as
in non calcium-binding EGF domains, whose structures are
very similar. EGF_CA can be found in tandem repeat
arrangements.
Length = 38
Score = 26.4 bits (59), Expect = 6.9
Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Query: 214 CSQECQCRNGAECHPATG--ECSCQPGFTGSLCE 245
C+ C+NG C G CSC PG+TG CE
Sbjct: 5 CASGNPCQNGGTCVNTVGSYRCSCPPGYTGRNCE 38
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.323 0.141 0.525
Gapped
Lambda K H
0.267 0.0686 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 37,610,975
Number of extensions: 3303223
Number of successful extensions: 2589
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2467
Number of HSP's successfully gapped: 268
Length of query: 823
Length of database: 10,937,602
Length adjustment: 105
Effective length of query: 718
Effective length of database: 6,280,432
Effective search space: 4509350176
Effective search space used: 4509350176
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 63 (28.1 bits)