RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6207
(823 letters)
>2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET:
NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B*
Length = 423
Score = 121 bits (304), Expect = 2e-29
Identities = 64/241 (26%), Positives = 91/241 (37%), Gaps = 8/241 (3%)
Query: 104 TCPDGLYGEGCDRTCECNVENTKLCVPVCTDECIRGTCIAPNTCKCEVGFGGPTCNIECP 163
+G + R ++ L D + C
Sbjct: 133 IYKNGSFIHSVPRHEVPDILEVHLPHAQPQDAGVYSAR--YIGGNLFTSAFTRLIVRRCE 190
Query: 164 EGHYGPDCKLACQ-CENGAGCDPNTGACDCLDGYMGTHCEEVCGPGRFGQNCSQECQ--- 219
+GP+C C C N C +TG C C G+MG CE+ C FG+ C + C
Sbjct: 191 AQKWGPECNHLCTACMNNGVCHEDTGECICPPGFMGRTCEKACELHTFGRTCKERCSGQE 250
Query: 220 -CRNGAECHPATGECSCQPGFTGSLCEERCPPGTHGPSCINRCRCQNGAICNPANGQCLC 278
C++ C P CSC G+ G C E C PG +GP C RC C NG +C+ G CLC
Sbjct: 251 GCKSYVFCLPDPYGCSCATGWKGLQCNEACHPGFYGPDCKLRCSCNNGEMCDRFQG-CLC 309
Query: 279 APGWMGSVCNVPCTPGMWGQGCTVPCECFNGASCHHVTGECQCEPGFKGQKCMDPCPEGT 338
+PGW G C P M + +P + + + P ++ P+GT
Sbjct: 310 SPGWQGLQCEREGIPRMTPKIVDLPDHIEVNSGKFNPICKASGWPLPTNEEMTLVKPDGT 369
Query: 339 W 339
Sbjct: 370 V 370
Score = 101 bits (253), Expect = 6e-23
Identities = 57/212 (26%), Positives = 74/212 (34%), Gaps = 9/212 (4%)
Query: 235 CQPGFTGSLCEERCPPGTHGPSCINRCRCQNGAICNPANGQCLCAPGWMGSVCNVPCTPG 294
+ G P + G G L + + C
Sbjct: 134 YKNGSFIHSVPRHEVPDILEVHLPHAQPQDAGVYSARYIGGNLFTSAFTR-LIVRRCEAQ 192
Query: 295 MWGQGCTVPC-ECFNGASCHHVTGECQCEPGFKGQKCMDPCPEGTWGKQCVHYCSCP--- 350
WG C C C N CH TGEC C PGF G+ C C T+G+ C CS
Sbjct: 193 KWGPECNHLCTACMNNGVCHEDTGECICPPGFMGRTCEKACELHTFGRTCKERCSGQEGC 252
Query: 351 VESMECSRIDGNCSCPPGFRGAKCKERTCPDGLYGEGCDRTCECNVENTKLCHAVTGKCE 410
+ C CSC G++G +C C G YG C C CN N ++C G C
Sbjct: 253 KSYVFCLPDPYGCSCATGWKGLQC-NEACHPGFYGPDCKLRCSCN--NGEMCDRFQG-CL 308
Query: 411 CGPGWDGLTCDRPCPITRWGDNCSQHCNCKND 442
C PGW GL C+R + + +
Sbjct: 309 CSPGWQGLQCEREGIPRMTPKIVDLPDHIEVN 340
Score = 96.7 bits (240), Expect = 2e-21
Identities = 62/278 (22%), Positives = 89/278 (32%), Gaps = 24/278 (8%)
Query: 171 CKLACQCENGAGCDPNTGACDCLDGYMGTHCEEVCGPGRFGQNCSQECQCRNGAECHPAT 230
K E A N + + EV P Q+ G
Sbjct: 121 FKKVLIKEEDAVIYKNGSFIHSVPRHEVPDILEVHLPHAQPQDAGVYSARYIG------- 173
Query: 231 GECSCQPGFTGSLCEERCPPGTHGPSCINRCR-CQNGAICNPANGQCLCAPGWMGSVCNV 289
+ L RC GP C + C C N +C+ G+C+C PG+MG C
Sbjct: 174 --GNLFTSAFTRLIVRRCEAQKWGPECNHLCTACMNNGVCHEDTGECICPPGFMGRTCEK 231
Query: 290 PCTPGMWGQGCTVPCE----CFNGASCHHVTGECQCEPGFKGQKCMDPCPEGTWGKQCVH 345
C +G+ C C C + C C C G+KG +C + C G +G C
Sbjct: 232 ACELHTFGRTCKERCSGQEGCKSYVFCLPDPYGCSCATGWKGLQCNEACHPGFYGPDCKL 291
Query: 346 YCSCPVESMECSRIDGNCSCPPGFRGAKCKERTCPDGLYGEGCDRTCECNVENTKLCHAV 405
CSC + E C C PG++G +C ER + + D ++
Sbjct: 292 RCSC--NNGEMCDRFQGCLCSPGWQGLQC-EREGIPRMTPKIVDLPDHIE------VNSG 342
Query: 406 TGKCECG-PGWDGLTCDRPCPITRWGDNCSQHCNCKND 442
C GW T + + G D
Sbjct: 343 KFNPICKASGWPLPTNEEMTLVKPDGTVLHPKDFNHTD 380
Score = 95.2 bits (236), Expect = 7e-21
Identities = 55/284 (19%), Positives = 79/284 (27%), Gaps = 32/284 (11%)
Query: 365 CPPGFRGAKCKERTCPDGLYGEGCDRTCECNVENTKLCHAVTGKCECGPGWDGLTCDRPC 424
G PD L ++ + A R C
Sbjct: 134 YKNGSFIHSVPRHEVPDIL----EVHLPHAQPQDAGVYSARYIGGNLFTSAFTRLIVRRC 189
Query: 425 PITRWGDNCSQHCN-CKNDALCFPRNGTNTYQYFFLQSLTLFTFLSLTHSGFSGRHCEKP 483
+WG C+ C C N+ +C G GF GR CEK
Sbjct: 190 EAQKWGPECNHLCTACMNNGVCHEDTGECI-----------------CPPGFMGRTCEKA 232
Query: 484 CPQGSYGQDCSQTCLCSKEGS--ASCSPGSGQCVCRPGGAGQLCDRPCSEGRYGQNCTQE 541
C ++G+ C + C + C P C C G G C+ C G YG +C
Sbjct: 233 CELHTFGRTCKERCSGQEGCKSYVFCLPDPYGCSCATGWKGLQCNEACHPGFYGPDCKLR 292
Query: 542 CRCMNGAACNPQDGTCLCPAGYYGPLCQKRCEFMTYGRNCAQACTCFTENSQGCDIVTGK 601
C C NG C+ G CLC G+ G C++ + +
Sbjct: 293 CSCNNGEMCDRFQG-CLCSPGWQGLQCEREGIPRMTPKIVDLPDHIE------VNSGKFN 345
Query: 602 CICR-PGFKGHRCETQCSNPNTYGEDCSLDCGCNNGGTCNQLDG 644
IC+ G+ E D + +
Sbjct: 346 PICKASGWPLPTNEEMTLVKPDGTVLHPKDFNHTDHFSVAIFTI 389
Score = 91.3 bits (226), Expect = 1e-19
Identities = 59/214 (27%), Positives = 76/214 (35%), Gaps = 21/214 (9%)
Query: 56 CMDPCPEGTWGKQCVHYCSCPVESMECSRIDGNCSCPPGFRGAKCKERTCPDGLYGEGCD 115
+ C WG +C H C+ + + C G C CPPGF G C E+ C +G C
Sbjct: 185 IVRRCEAQKWGPECNHLCTACMNNGVCHEDTGECICPPGFMGRTC-EKACELHTFGRTCK 243
Query: 116 RTCECNV--ENTKLCVPVCTDECIRGTCIAPNTCKCEVGFGGPTCNIECPEGHYGPDCKL 173
C ++ C+P P C C G+ G CN C G YGPDCKL
Sbjct: 244 ERCSGQEGCKSYVFCLPD------------PYGCSCATGWKGLQCNEACHPGFYGPDCKL 291
Query: 174 ACQCENGAGCDPNTGACDCLDGYMGTHCEEVCGPGRFGQNCSQECQCRNGAECHPATGEC 233
C C NG CD G C C G+ G CE P + E +
Sbjct: 292 RCSCNNGEMCDRFQG-CLCSPGWQGLQCEREGIPRMTPKIVDLPDHI----EVNSGKFNP 346
Query: 234 SCQ-PGFTGSLCEERCPPGTHGPSCINRCRCQNG 266
C+ G+ EE G +
Sbjct: 347 ICKASGWPLPTNEEMTLVKPDGTVLHPKDFNHTD 380
Score = 76.7 bits (188), Expect = 8e-15
Identities = 44/175 (25%), Positives = 62/175 (35%), Gaps = 7/175 (4%)
Query: 504 SASCSPGSGQCVCRPGGAGQLCDRPCSEGRYGQNCTQECRCMNGAACNPQDGTCLCPAGY 563
+ + G R + + + + +
Sbjct: 122 KKVLIKEEDAVIYKNGSFIHSVPRHEVPDILEVHL-PHAQPQDAGVYSARYIGGNLFTSA 180
Query: 564 YGPLCQKRCEFMTYGRNCAQACTCFTENSQGCDIVTGKCICRPGFKGHRCETQCSNPNTY 623
+ L +RCE +G C CT N C TG+CIC PGF G CE C +T+
Sbjct: 181 FTRLIVRRCEAQKWGPECNHLCTACMNNGV-CHEDTGECICPPGFMGRTCEKAC-ELHTF 238
Query: 624 GEDCSLDC----GCNNGGTCNQLDGGCNCGRGYQGKLCTAPCPEGQYGYNCKEEC 674
G C C GC + C GC+C G++G C C G YG +CK C
Sbjct: 239 GRTCKERCSGQEGCKSYVFCLPDPYGCSCATGWKGLQCNEACHPGFYGPDCKLRC 293
Score = 71.7 bits (175), Expect = 3e-13
Identities = 53/267 (19%), Positives = 82/267 (30%), Gaps = 40/267 (14%)
Query: 553 QDGTCLCPAGYYGPLCQKRCEFMTYGRNCAQACTCFTENSQGCDIVTGKCICRPGFKGHR 612
++ + G + + + A + G + F
Sbjct: 128 EEDAVIYKNGSFIHSVPRHEVPDILEVHLPHAQPQ--DAGVYSARYIGGNLFTSAFTRLI 185
Query: 613 CETQCSNPNTYGEDCSLDC-GCNNGGTCNQLDGGCNCGRGYQGKLCTAPCPEGQYGYNCK 671
+G +C+ C C N G C++ G C C G+ G+ C C +G CK
Sbjct: 186 VRRCE--AQKWGPECNHLCTACMNNGVCHEDTGECICPPGFMGRTCEKACELHTFGRTCK 243
Query: 672 EECLTKGQDVPVRTAVSHALKVHMGINARRYVNVRMVATFNTTLYLYLFVNLTYGILYKT 731
E C + + YG T
Sbjct: 244 ERCSGQE----------------------------------GCKSYVFCLPDPYGCSCAT 269
Query: 732 LVRLRECEERCPPGTHGPSCINRCRCQNGAICNPANGQCLCAPGWMGSVCNVPCTPGMWG 791
+ +C E C PG +GP C RC C NG +C+ G CLC+PGW G C P M
Sbjct: 270 GWKGLQCNEACHPGFYGPDCKLRCSCNNGEMCDRFQG-CLCSPGWQGLQCEREGIPRMTP 328
Query: 792 QGCTVPCECFNGASCHHVTGECQCEPG 818
+ +P + + + P
Sbjct: 329 KIVDLPDHIEVNSGKFNPICKASGWPL 355
Score = 64.7 bits (157), Expect = 5e-11
Identities = 35/89 (39%), Positives = 43/89 (48%), Gaps = 5/89 (5%)
Query: 738 CEERCPPGTHGPSCINRC----RCQNGAICNPANGQCLCAPGWMGSVCNVPCTPGMWGQG 793
CE+ C T G +C RC C++ C P C CA GW G CN C PG +G
Sbjct: 229 CEKACELHTFGRTCKERCSGQEGCKSYVFCLPDPYGCSCATGWKGLQCNEACHPGFYGPD 288
Query: 794 CTVPCECFNGASCHHVTGECQCEPGFKGQ 822
C + C C NG C G C C PG++G
Sbjct: 289 CKLRCSCNNGEMCDRFQG-CLCSPGWQGL 316
Score = 60.9 bits (147), Expect = 8e-10
Identities = 29/92 (31%), Positives = 39/92 (42%), Gaps = 5/92 (5%)
Query: 736 RECEERCPPGTHGPSCINRCR-CQNGAICNPANGQCLCAPGWMGSVCNVPCTPGMWGQGC 794
R RC GP C + C C N +C+ G+C+C PG+MG C C +G+ C
Sbjct: 183 RLIVRRCEAQKWGPECNHLCTACMNNGVCHEDTGECICPPGFMGRTCEKACELHTFGRTC 242
Query: 795 TVPCE----CFNGASCHHVTGECQCEPGFKGQ 822
C C + C C C G+KG
Sbjct: 243 KERCSGQEGCKSYVFCLPDPYGCSCATGWKGL 274
Score = 46.2 bits (109), Expect = 3e-05
Identities = 24/98 (24%), Positives = 31/98 (31%), Gaps = 2/98 (2%)
Query: 726 GILYKTLVRLRECEERCPPGTHGPSCINRCRCQNGAICNPANGQCLCAPGWMGSVCNVPC 785
++YK + P + G G L + + C
Sbjct: 131 AVIYKNGSFIHSVPRHEVPDILEVHLPHAQPQDAGVYSARYIGGNLFTSAFTR-LIVRRC 189
Query: 786 TPGMWGQGCTVPC-ECFNGASCHHVTGECQCEPGFKGQ 822
WG C C C N CH TGEC C PGF G+
Sbjct: 190 EAQKWGPECNHLCTACMNNGVCHEDTGECICPPGFMGR 227
>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell
adhesion, DI mutation, glycoprotein, HOST-virus
interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo
sapiens} PDB: 3ije_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*
Length = 690
Score = 111 bits (279), Expect = 2e-25
Identities = 58/316 (18%), Positives = 85/316 (26%), Gaps = 33/316 (10%)
Query: 104 TCPDGLYGEGCDRTCECNVENTKLCVPVCTDECIRGTCIAPNTCKCEVGFGGPTC---NI 160
TC + G ++C + + + VGF
Sbjct: 373 TCLNNEVIPGL-KSCMGLKIGDTVSFSIEAKVRGCPQEKEKSFTIKPVGFKDSLIVQVTF 431
Query: 161 ECPEGHYGPDCKLACQCENGAGCDPNTGACDCLDGYMGTHCEEVCGPGRFGQNCSQECQC 220
+C + +C NG G C C G++G+ CE C + + EC
Sbjct: 432 DCDCACQAQAEPNSHRCNNG-NGTFECGVCRCGPGWLGSQCE--CSEEDYRPSQQDECSP 488
Query: 221 RNGAEC-----HPATGECSCQPGFTGSLCEERCPPGTHGPSCINRCRCQNGAICNPANGQ 275
R G G+C C G + + C C C+ G
Sbjct: 489 REGQPVCSQRGECLCGQCVCHSSDFGKITGKYCECDDFSCVRYKGEMCSGHGQCS--CGD 546
Query: 276 CLCAPGWMGSVCNVPCTPGMWGQGCTVPCECFNGASCHHVTGECQCEPGFKGQKCMDPCP 335
CLC W G CN + C C G C C
Sbjct: 547 CLCDSDWTGYYCNCTTRTDTCMSSNGLLCSGRGKCEC----GSCVC------------IQ 590
Query: 336 EGTWGKQCVHYCSCPVESMECSRIDGNCSCPPGFRGAKCKERTCPDGLYGEGCDRTCECN 395
G++G C +CP C+ C RGA E TC E +
Sbjct: 591 PGSYGDTCEKCPTCP---DACTFKKECVECKKFDRGALHDENTCNRYCRDEIESVKELKD 647
Query: 396 VENTKLCHAVTGKCEC 411
+ + +C
Sbjct: 648 TGKDAVNCTYKNEDDC 663
Score = 96.7 bits (240), Expect = 8e-21
Identities = 57/321 (17%), Positives = 87/321 (27%), Gaps = 37/321 (11%)
Query: 3 CVPVCTDECIRGTCIAPNTCKCEVGFGGPTCNIAKDAKTKPTDTYTFRLMFPQCMDPCPE 62
V C+ + E G K KP ++ C
Sbjct: 378 EVIPGLKSCMGLKIGDTVSFSIEAKVRGCPQEKEKSFTIKPVGFKDSLIVQVTFDCDCAC 437
Query: 63 GTWGKQCVHYCSCPVESMECSRIDGNCSCPPGFRGAKCKERTCPDGLYGEGCDRTCECNV 122
+ H C+ + EC G C C PG+ G++C C + Y C
Sbjct: 438 QAQAEPNSHRCNNGNGTFEC----GVCRCGPGWLGSQC---ECSEEDYRPSQQDECSPRE 490
Query: 123 ENTKLCVPVCTDECIRGTCIAPNTCKCEVGFGGPTCNIECPEGHYGPDCKLACQCENGAG 182
PVC+ RG C+ C C G C + C
Sbjct: 491 -----GQPVCSQ---RGECL-CGQCVCHSSDFGKITGKYCECDDFSCVRYKGEMCSGHGQ 541
Query: 183 CDPNTGACDCLDGYMGTHCEEVCGPGRFGQNCSQECQCRNGAECHPATGECSCQPGFTGS 242
C G C C + G +C + C R EC G C C
Sbjct: 542 CS--CGDCLCDSDWTGYYCNCTTRTDTCMSSNGLLCSGRGKCEC----GSCVC------- 588
Query: 243 LCEERCPPGTHGPSCINRCRCQNGAICNPANGQCLCAPGWMGSVCNVPCTPGM-WGQGCT 301
PG++G +C C + C C G++ + + +
Sbjct: 589 -----IQPGSYGDTCEKCPTCPDA--CTFKKECVECKKFDRGALHDENTCNRYCRDEIES 641
Query: 302 VPCECFNGASCHHVTGECQCE 322
V G + T + + +
Sbjct: 642 VKELKDTGKDAVNCTYKNEDD 662
Score = 85.9 bits (212), Expect = 2e-17
Identities = 59/321 (18%), Positives = 87/321 (27%), Gaps = 54/321 (16%)
Query: 360 DGNCSCPPGFRGAKCKERTCPDGLYGEGCDRTCECNVENTKLCHAVTGKCECGPGWDGLT 419
G + K R CP + L VT C+C
Sbjct: 387 MGLKIGDTVSFSIEAKVRGCPQEKEKSFTIKPVGFKDS---LIVQVTFDCDCACQAQAEP 443
Query: 420 CDRPCPITRWGDNCSQHCNCKNDALCFPRNGTNTYQYFFLQSLTLFTFLSLTHSGFSGRH 479
C G C C G+ G
Sbjct: 444 NSHRCN-NGNGTFECGVCRC--------------------------------GPGWLGSQ 470
Query: 480 CEKPCPQGSYGQDCSQTCLCSKEGSASCSPG----SGQCVCRPGGAGQLCDRPCSEGRYG 535
CE C + Y C +EG CS GQCVC G++ + C +
Sbjct: 471 CE--CSEEDYRPSQQDECSP-REGQPVCSQRGECLCGQCVCHSSDFGKITGKYCECDDFS 527
Query: 536 QNCTQECRCMNGAACNPQDGTCLCPAGYYGPLCQKRCEFMTYGRNCAQACTCFTENSQGC 595
+ C C+ G CLC + + G C T + C S
Sbjct: 528 CVRYKGEMCSGHGQCS--CGDCLCDSDWTGYYCNCTTRTDTCMSSNGLLC------SGRG 579
Query: 596 DIVTGKCIC-RPGFKGHRCETQCSNPNTYGEDCS-LDCGCNNGGTCNQLDGGCNCGRGYQ 653
G C+C +PG G CE + P+ ++C + G + + CN +
Sbjct: 580 KCECGSCVCIQPGSYGDTCEKCPTCPDACTFKKECVECKKFDRGALHDEN-TCNRYCRDE 638
Query: 654 GKLCTAPCPEGQYGYNCKEEC 674
+ G+ NC +
Sbjct: 639 IESVKELKDTGKDAVNCTYKN 659
Score = 85.1 bits (210), Expect = 3e-17
Identities = 52/336 (15%), Positives = 78/336 (23%), Gaps = 51/336 (15%)
Query: 213 NCSQECQCRNGAECHPATGECSCQPGFTGSLCEERCPPGTHGPSCINRCRCQNGAICNPA 272
C C G + R P S + ++
Sbjct: 373 TCLNNEVIPGLKSC---MGLKIGDTVSFSIEAKVRGCPQEKEKSFTIKPVGFKDSLIVQV 429
Query: 273 NGQCLCAPGWMGSVCNVPCTPGMWGQGCTVPCECFNGASCHHVTGECQCEPGFKGQKCMD 332
C CA + C N + G C+C PG+ G +C
Sbjct: 430 TFDCDCACQAQAEPNSHRC----------------NNGNGTFECGVCRCGPGWLGSQC-- 471
Query: 333 PCPEGTWGKQCVHYCSCPVESMECSR----IDGNCSCPPGFRGAKCKERTCPDGLYGEGC 388
C E + CS CS+ + G C C G + C +
Sbjct: 472 ECSEEDYRPSQQDECSPREGQPVCSQRGECLCGQCVCHSSDFGKIT-GKYCECDDFSCVR 530
Query: 389 DRTCECNVENTKLCHAVTGKCECGPGWDGLTCDRPCPITRWGDNCSQHCNCKNDALCFPR 448
+ C+ G C C W G C+ + C+ + C
Sbjct: 531 YKGEMCSGH----GQCSCGDCLCDSDWTGYYCNCTTRTDTCMSSNGLLCSGRGKCECGS- 585
Query: 449 NGTNTYQYFFLQSLTLFTFLSLTHSGFSGRHCEKPCPQGSYGQDCSQTCLCSKEGSASCS 508
G G CEK CP + C+ K+
Sbjct: 586 -------------------CVCIQPGSYGDTCEK-CPTCPDACTFKKECVECKKFDRGAL 625
Query: 509 PGSGQCVCRPGGAGQLCDRPCSEGRYGQNCTQECRC 544
C + G+ NCT +
Sbjct: 626 HDENTCNRYCRDEIESVKELKDTGKDAVNCTYKNED 661
Score = 80.5 bits (198), Expect = 1e-15
Identities = 58/319 (18%), Positives = 86/319 (26%), Gaps = 45/319 (14%)
Query: 334 CPEGTWGKQCVHYCSCPVESMECSRIDGNCSCPPGFRGAKCKE--RTCPDGLYGEGCDRT 391
C G V + P GF+ + + C + +
Sbjct: 386 CMGLKIGDTVSFSIEAKVRGCPQEKEKSFTIKPVGFKDSLIVQVTFDCDCACQAQAEPNS 445
Query: 392 CECNVENTKLCHAVTGKCECGPGWDGLTCDRPCPITRWGDNCSQHCNCKNDALCFPRNGT 451
CN N G C CGPGW G C+ C + + C+ + + G
Sbjct: 446 HRCNNGN---GTFECGVCRCGPGWLGSQCE--CSEEDYRPSQQDECSPREGQPVCSQRGE 500
Query: 452 NTYQYFFLQSLTLFTFLSLTHSGFSGRHCEKPCPQGSYGQDCSQTCLCSKEGSASCSPGS 511
+ HS G+ K C + + +CS G SC
Sbjct: 501 CL------------CGQCVCHSSDFGKITGKYCECDDFSCVRYKGEMCSGHGQCSC---- 544
Query: 512 GQCVCRPGGAGQLCDRPCSEGRYGQNCTQECRCMNGAACNPQDGTCLC-PAGYYGPLCQK 570
G C+C G C+ + C C G+C+C G YG C+K
Sbjct: 545 GDCLCDSDWTGYYCNCTTRTDTCMSSNGLLCSGRGKCEC----GSCVCIQPGSYGDTCEK 600
Query: 571 RCEFMTYGRNCAQACTCFTENSQGCDIVTGKCICRPGFKGHRCETQCSNPNTYGEDCSLD 630
C ACT E C+ +G + N E S+
Sbjct: 601 CP-------TCPDACTFKKEC----------VECKKFDRGALHDENTCNRYCRDEIESVK 643
Query: 631 CGCNNGGTCNQLDGGCNCG 649
+ G
Sbjct: 644 ELKDTGKDAVNCTYKNEDD 662
Score = 77.8 bits (191), Expect = 6e-15
Identities = 34/203 (16%), Positives = 54/203 (26%), Gaps = 9/203 (4%)
Query: 480 CEKPCPQGSYGQDCSQTCLCSKEGSASCSPGSGQCVCRPGGAGQLCDRPCSEGRYGQNCT 539
+ S + + V C Q
Sbjct: 384 KSCMGLKIGDTVSFSIEAKVRGCPQEKEKSFTIKPVGFKDSLIVQVTFDCDCACQAQAEP 443
Query: 540 QECRCMNGAACNPQDGTCLCPAGYYGPLCQKRCEFMTYGRNCAQACTCFTEN---SQGCD 596
RC NG + G C C G+ G C+ C Y + C+ SQ +
Sbjct: 444 NSHRCNNGN-GTFECGVCRCGPGWLGSQCE--CSEEDYRPSQQDECSPREGQPVCSQRGE 500
Query: 597 IVTGKCICRPGFKGHRCETQCSNPNTYGEDCSLDCGCNNGGTCNQLDGGCNCGRGYQGKL 656
+ G+C+C G C + + C+ G C+ G C C + G
Sbjct: 501 CLCGQCVCHSSDFGKITGKYCECDD-FSCVRYKGEMCSGHGQCS--CGDCLCDSDWTGYY 557
Query: 657 CTAPCPEGQYGYNCKEECLTKGQ 679
C + C +G+
Sbjct: 558 CNCTTRTDTCMSSNGLLCSGRGK 580
Score = 76.3 bits (187), Expect = 2e-14
Identities = 43/295 (14%), Positives = 64/295 (21%), Gaps = 78/295 (26%)
Query: 2 ECVPVCTDECIRGTCIAPNTCKCEVGFGGPTCNIAKDAKTKPTDTYTFRLMFPQCMDPCP 61
+ P C+C G+ G C C
Sbjct: 440 QAEPNSHRCNNGNGTFECGVCRCGPGWLGSQCE-------------------------CS 474
Query: 62 EGTWGKQCVHYCSCPVESMECSR----IDGNCSCPPGFRGAKCKERTCPDGLYGEGCDRT 117
E + CS CS+ + G C C G + C + +
Sbjct: 475 EEDYRPSQQDECSPREGQPVCSQRGECLCGQCVCHSSDFGKIT-GKYCECDDFSCVRYKG 533
Query: 118 CECNVENTKLCVPVCTDECIRGTCIAPNTCKCEVGFGGPTCNIECPEGHYGPDCKLACQC 177
C+ G C C C+ + G CN L C
Sbjct: 534 EMCSG---------------HGQCS-CGDCLCDSDWTGYYCNCTTRTDTCMSSNGLLCSG 577
Query: 178 ENGAGCDPNTGACDCLDGYMGTHCEEVCGPGRFGQNCSQECQCRNGAECHPATGECSCQP 237
G+C C PG +G C + C + C+
Sbjct: 578 ----RGKCECGSCVC------------IQPGSYGDTCEKCPTCPDACTFKKEC--VECKK 619
Query: 238 GFTGSLCEERCPPGTHGPSCINRCRCQNGAICNPANGQCLCAPGWMGSVCNVPCT 292
G+L +E C + + L G C
Sbjct: 620 FDRGALHDENTCNRY----CRDEIES----------VKELKDTGKDAVNCTYKNE 660
Score = 53.6 bits (128), Expect = 2e-07
Identities = 17/86 (19%), Positives = 26/86 (30%), Gaps = 7/86 (8%)
Query: 742 CPPGTHGPSCINRCRCQNGAIC-----NPANGQCLCAPGWMGSVCNVPCTPGMWGQGCTV 796
C + PS + C + G GQC+C G + C +
Sbjct: 473 CSEEDYRPSQQDECSPREGQPVCSQRGECLCGQCVCHSSDFGKITGKYCECDDFSCVRYK 532
Query: 797 PCECFNGASCHHVTGECQCEPGFKGQ 822
C C G+C C+ + G
Sbjct: 533 GEMCSGHGQC--SCGDCLCDSDWTGY 556
Score = 49.7 bits (118), Expect = 3e-06
Identities = 19/86 (22%), Positives = 23/86 (26%), Gaps = 7/86 (8%)
Query: 738 CEERCPPGTHGPSCINRCRCQNGAICNPANGQCLCAPGWMGSVCNVPCTPGMWGQGCTVP 797
+ C C C+ G CLC W G CN +
Sbjct: 517 TGKYCECDDFSCVRYKGEMCSGHGQCS--CGDCLCDSDWTGYYCNCTTRTDTCMSSNGLL 574
Query: 798 CECFNGASCHHVTGECQC-EPGFKGQ 822
C C G C C +PG G
Sbjct: 575 CSGRGKCEC----GSCVCIQPGSYGD 596
Score = 49.7 bits (118), Expect = 3e-06
Identities = 22/91 (24%), Positives = 30/91 (32%), Gaps = 8/91 (8%)
Query: 737 ECEERCPPGTHGPSCINRCRCQNGAICNPANGQCLCAPGWMGSVCNVPCTPGMWGQGCTV 796
+ C + N RC NG G C C PGW+GS C C+ +
Sbjct: 428 QVTFDCDCACQAQAEPNSHRCNNGN-GTFECGVCRCGPGWLGSQCE--CSEEDYRPSQQD 484
Query: 797 PCECFNGASCHH-----VTGECQCEPGFKGQ 822
C G + G+C C G+
Sbjct: 485 ECSPREGQPVCSQRGECLCGQCVCHSSDFGK 515
Score = 38.5 bits (89), Expect = 0.009
Identities = 26/129 (20%), Positives = 36/129 (27%), Gaps = 9/129 (6%)
Query: 13 RGTCIAPNTCKCEVGFGGPTCNIAKDAKTKPTDTYTFRLMFPQCMDP----CPEGTWGKQ 68
G C C C+ + G CN T + +C G++G
Sbjct: 539 HGQCS-CGDCLCDSDWTGYYCNCTTRTDTCMSSNGLLCSGRGKCECGSCVCIQPGSYGDT 597
Query: 69 CVHYCSCPVESMECSRIDGNCSCPPGFRGAKCKERTCPDGLYGEGCDRTCECNVENT-KL 127
C +CP C+ C RGA E TC E +
Sbjct: 598 CEKCPTCP---DACTFKKECVECKKFDRGALHDENTCNRYCRDEIESVKELKDTGKDAVN 654
Query: 128 CVPVCTDEC 136
C D+C
Sbjct: 655 CTYKNEDDC 663
Score = 33.5 bits (76), Expect = 0.37
Identities = 13/82 (15%), Positives = 24/82 (29%), Gaps = 5/82 (6%)
Query: 742 CPPGTHGPSCINRCRCQNGAICNPANGQCLCAPGWMGSVCNVPCTPGM-WGQGCTVPCEC 800
PG++G +C C + C C G++ + + +V
Sbjct: 589 IQPGSYGDTCEKCPTCPDA--CTFKKECVECKKFDRGALHDENTCNRYCRDEIESVKELK 646
Query: 801 FNGASCHH--VTGECQCEPGFK 820
G + E C F+
Sbjct: 647 DTGKDAVNCTYKNEDDCVVRFQ 668
>4aqs_A Laminin subunit beta-1; cell adhesion; HET: NAG BMA MAN FUL; 3.11A
{Mus musculus}
Length = 525
Score = 109 bits (274), Expect = 3e-25
Identities = 58/302 (19%), Positives = 75/302 (24%), Gaps = 41/302 (13%)
Query: 102 ERTCPDGLYGEGCDRTCECNVENTKLCVPVCTDECIRGTCIAPNTCKCEVGFGGPTCNIE 161
+Y C C + C P + C C G C +
Sbjct: 238 REKYYYAVYDMVVRGNCFCYG-HASECAP-VDGVNEEVEGMVHGHCMCRHNTKGLNCELC 295
Query: 162 CP---------EGHYGPDCKLACQCENGAGCDPNTGACDCLDGYMGTHCEEVCGPGRFGQ 212
+ C C + A G + + C G+
Sbjct: 296 MDFYHDLPWRPAEGRNSNACKKCNCNEHSSSCHFDMAVFLATGNVSGGVCDNCQHNTMGR 355
Query: 213 NCSQECQCRNGAECHPATGECSCQPGFTGSLCEERCPPGTHGPSCINRCRCQNGAICNPA 272
NC Q C+P C G C
Sbjct: 356 NCEQCKPFYFQHPERDIRDPNLCEP----------CTCDPAGSENGGICDGYTDFSVGLI 405
Query: 273 NGQCLCAPGWMGSVCNVPCTPGMWGQGCTVPCECF-----------NGASCHHVTGECQC 321
GQC C G C+ C G + P C G C TG C C
Sbjct: 406 AGQCRCKLHVEGERCD-VCKEGFYDLSAEDPYGCKSCACNPLGTIPGGNPCDSETGYCYC 464
Query: 322 EPGFKGQKCMDPCPEGTWGKQCVHY----CSCPV---ESMECSRIDGNCSCPPGFRGAKC 374
+ GQ+C D C WG C C + + CS G CSC P G +C
Sbjct: 465 KRLVTGQRC-DQCLPQHWGLSNDLDGCRPCDCDLGGALNNSCSEDSGQCSCLPHMIGRQC 523
Query: 375 KE 376
E
Sbjct: 524 NE 525
Score = 88.6 bits (219), Expect = 2e-18
Identities = 45/273 (16%), Positives = 66/273 (24%), Gaps = 57/273 (20%)
Query: 174 ACQCENGAGCDPNTGACDCLDGYMGTHCEE---------VCGPGRFGQNCSQECQCRNGA 224
N G C C G +CE N ++C C +
Sbjct: 265 PVDGVNEEVEGMVHGHCMCRHNTKGLNCELCMDFYHDLPWRPAEGRNSNACKKCNCNEHS 324
Query: 225 ECHPATGECSCQPGFTGSLCEERCPPGTHGPSCINRCRCQNGAICNPANGQCLCAPGWMG 284
G + C T G +C LC
Sbjct: 325 SSCHFDMAVFLATGNVSGGVCDNCQHNTMGRNCEQCKPFYFQHPERDIRDPNLC------ 378
Query: 285 SVCNVPCTPGMWGQGCTVPCECFNGASCHHVTGECQCEPGFKGQKCMDPCPEGTWGKQCV 344
PCT G C+ + S + G+C+C+ +G++C D C EG +
Sbjct: 379 ----EPCTCDPAGSENGGICDGYTDFSVGLIAGQCRCKLHVEGERC-DVCKEGFYDLSAE 433
Query: 345 HYCSCPVESMECSRIDGNCSCPPGFRGAKCKERTCPDGLYGEGCDRTCECNVENTKLCHA 404
C + C + C +
Sbjct: 434 DPYGC------------------------------------KSCACNPLGTIPGGNPCDS 457
Query: 405 VTGKCECGPGWDGLTCDRPCPITRWGDNCSQHC 437
TG C C G CD+ C WG +
Sbjct: 458 ETGYCYCKRLVTGQRCDQ-CLPQHWGLSNDLDG 489
Score = 87.4 bits (216), Expect = 4e-18
Identities = 55/344 (15%), Positives = 79/344 (22%), Gaps = 85/344 (24%)
Query: 244 CEERCPPGTHGPSCINRCRCQNGAICNPANGQCLCAPGWMGSVCNVPCT---------PG 294
C H C N + +G C+C G C +
Sbjct: 250 VRGNCFCYGHASECAP-VDGVNEEVEGMVHGHCMCRHNTKGLNCELCMDFYHDLPWRPAE 308
Query: 295 MWGQGCTVPCECFNGASCHHVTGECQCEPGFKGQKCMDPCPEGTWGKQCVHYCSCPVESM 354
C C +S H G D C T G+ C
Sbjct: 309 GRNSNACKKCNCNEHSSSCHFDMAVFLATGNVSGGVCDNCQHNTMGRNCEQCKPF----- 363
Query: 355 ECSRIDGNCSCPPGFRGAKCKERTCPDGLYGEGCDRTCECNVENTKLCHAVTGKCECGPG 414
C+ C G C+ + G+C C
Sbjct: 364 -----YFQHPERDIRDPNLCEP--CTCDPAGSENGGICDG--YTDFSVGLIAGQCRCKLH 414
Query: 415 WDGLTCDRPCPITRWGDNCSQHCNCKNDALCFPRNGTNTYQYFFLQSLTLFTFLSLTHSG 474
+G CD C + + CK+
Sbjct: 415 VEGERCDV-CKEGFYDLSAEDPYGCKS--------------------------------- 440
Query: 475 FSGRHCEKPCPQGSYGQDCSQTCLCSKEGSASCSPGSGQCVCRPGGAGQLCDRPCSEGRY 534
C+ L + G C +G C C+ GQ CD+ C +
Sbjct: 441 ------------------CACNPLGTIPGGNPCDSETGYCYCKRLVTGQRCDQ-CLPQHW 481
Query: 535 GQNCT----QECRCMNGAA----CNPQDGTCLCPAGYYGPLCQK 570
G + + C C G A C+ G C C G C +
Sbjct: 482 GLSNDLDGCRPCDCDLGGALNNSCSEDSGQCSCLPHMIGRQCNE 525
Score = 86.3 bits (213), Expect = 1e-17
Identities = 60/296 (20%), Positives = 84/296 (28%), Gaps = 58/296 (19%)
Query: 388 CDRTCECNVENTKLCHAVTGKCECGPGWDGLTCDRPCP---------ITRWGDNCSQHCN 438
+ N ++ V G C C GL C+ N + CN
Sbjct: 260 ASECAPVDGVNEEVEGMVHGHCMCRHNTKGLNCELCMDFYHDLPWRPAEGRNSNACKKCN 319
Query: 439 CKNDALCFPRNGTNTYQYFFLQSLTLFTFLSLTHSGFSGRHCEKPCPQGSYGQDCSQTCL 498
C + + +G C + G++C Q
Sbjct: 320 CNEHSSSCHFDMA-----------------VFLATGNVSGGVCDNCQHNTMGRNCEQ--- 359
Query: 499 CSKEGSASCSPGSGQCVCRPGGAGQLCDRPCSEGRYGQNCTQECRCMNGAACNPQDGTCL 558
C P Q R LC PC+ G C + G C
Sbjct: 360 --------CKPFYFQHPERDIRDPNLC-EPCTCDPAGSENGGICDGYTDFSVGLIAGQCR 410
Query: 559 CPAGYYGPLCQKRCEFMTYGRNCAQACTCF---------TENSQGCDIVTGKCICRPGFK 609
C G C C+ Y + C CD TG C C+
Sbjct: 411 CKLHVEGERCD-VCKEGFYDLSAEDPYGCKSCACNPLGTIPGGNPCDSETGYCYCKRLVT 469
Query: 610 GHRCETQCSNPNTYGEDCSLD----CGCNNGG----TCNQLDGGCNCGRGYQGKLC 657
G RC+ QC P +G LD C C+ GG +C++ G C+C G+ C
Sbjct: 470 GQRCD-QC-LPQHWGLSNDLDGCRPCDCDLGGALNNSCSEDSGQCSCLPHMIGRQC 523
Score = 83.2 bits (205), Expect = 8e-17
Identities = 57/332 (17%), Positives = 78/332 (23%), Gaps = 74/332 (22%)
Query: 300 CTVPCECFNGAS-CHHVTGECQCEPGFKGQKCMDPCPEGTWGKQCVHYCSCPVESMECSR 358
C C+ AS C V G + G CM C T G C
Sbjct: 250 VRGNCFCYGHASECAPVDGVNEEVEGMVHGHCM--CRHNTKGLNC--------------- 292
Query: 359 IDGNCSCPPGFRGAKCKERTCPDGLYGEGCDRTCECNVENTKLCHAVTGKCECGPGWDGL 418
C + P + C CN G
Sbjct: 293 ----ELCMDFYHDLPW----RPAEGRNSNACKKCNCN--EHSSSCHFDMAVFLATGNVSG 342
Query: 419 TCDRPCPITRWGDNCSQHCNCKNDALCFPRNGTNTYQYFFLQSLTLFTFLSLTHSGFSGR 478
C G NC Q
Sbjct: 343 GVCDNCQHNTMGRNCEQCKPFYFQHPE---------------------------RDIRDP 375
Query: 479 HCEKPCPQGSYGQDCSQTCLCSKEGSASCSPGSGQCVCRPGGAGQLCDR----------P 528
+ +PC G + C + S +GQC C+ G+ CD
Sbjct: 376 NLCEPCTCDPAGSENGGICDGYTDFS--VGLIAGQCRCKLHVEGERCDVCKEGFYDLSAE 433
Query: 529 CSEGRYGQNCTQECRCMNGAACNPQDGTCLCPAGYYGPLCQKRCEFMTYGRNCA----QA 584
G C G C+ + G C C G C +C +G + +
Sbjct: 434 DPYGCKSCACNPLGTIPGGNPCDSETGYCYCKRLVTGQRCD-QCLPQHWGLSNDLDGCRP 492
Query: 585 CTCFTENSQG--CDIVTGKCICRPGFKGHRCE 614
C C + C +G+C C P G +C
Sbjct: 493 CDCDLGGALNNSCSEDSGQCSCLPHMIGRQCN 524
Score = 83.2 bits (205), Expect = 8e-17
Identities = 51/300 (17%), Positives = 66/300 (22%), Gaps = 59/300 (19%)
Query: 7 CTDECIRGTCIAPNTCKCEVGFGGPTCNIAKDAKTKPTDTYTFRLMFPQCMDPCPEGTWG 66
+ C C G C + D F + P
Sbjct: 266 VDGVNEEVEGMVHGHCMCRHNTKGLNCELCMD--------------FYHDLPWRPAEGRN 311
Query: 67 KQCVHYCSCPVESMECSRIDGNCSCPPGFRGAKCKERTCPDGLYGEGCDRTCECNVENTK 126
C+C S C D G C G C++
Sbjct: 312 SNACKKCNCNEHSSSC-HFDMAVFLATGNVSGGV-CDNCQHNTMGRNCEQCKPFY----- 364
Query: 127 LCVPVCTDECIRGTCIAPNTCKCEVGFGGPTCNIECPEGHYGPDCKLACQCENGAGCDPN 186
C C G + C
Sbjct: 365 ------------------FQHPERDIRDPNLC-EPCTCDPAGSENGGICDGYTDFSVGLI 405
Query: 187 TGACDCLDGYMGTHCE----------EVCGPGRFGQNCSQECQCRNGAECHPATGECSCQ 236
G C C G C+ G C+ G C TG C C+
Sbjct: 406 AGQCRCKLHVEGERCDVCKEGFYDLSAEDPYGCKSCACNPLGTIPGGNPCDSETGYCYCK 465
Query: 237 PGFTGSLCEERCPPGTHGPSCIN----RCRCQN----GAICNPANGQCLCAPGWMGSVCN 288
TG C ++C P G S C C C+ +GQC C P +G CN
Sbjct: 466 RLVTGQRC-DQCLPQHWGLSNDLDGCRPCDCDLGGALNNSCSEDSGQCSCLPHMIGRQCN 524
Score = 70.5 bits (172), Expect = 9e-13
Identities = 35/218 (16%), Positives = 58/218 (26%), Gaps = 29/218 (13%)
Query: 473 SGFSGRHCEKPCP-------QGSYGQDCSQTCLCSKEGSASCSPGSGQCVCRPGGAGQLC 525
G +CE + + G++ + C+ +S G
Sbjct: 285 HNTKGLNCELCMDFYHDLPWRPAEGRNSNACKKCNCNEHSSSCHFDMAVFLATGNVSGGV 344
Query: 526 DRPCSEGRYGQNCTQECRCMNGAACNPQDGTCLCPAGYYGPLCQKRCEFMTYGRNCAQAC 585
C G+NC Q LC P G C
Sbjct: 345 CDNCQHNTMGRNCEQCKPFYFQHPERDIRDPNLCEPCTCDP----------AGSENGGIC 394
Query: 586 TCFTENSQGCDIVTGKCICRPGFKGHRCE---------TQCSNPNTYGEDCSLDCGCNNG 636
+T ++ G+C C+ +G RC+ + C+ G
Sbjct: 395 DGYT--DFSVGLIAGQCRCKLHVEGERCDVCKEGFYDLSAEDPYGCKSCACNPLGTIPGG 452
Query: 637 GTCNQLDGGCNCGRGYQGKLCTAPCPEGQYGYNCKEEC 674
C+ G C C R G+ C C +G + +
Sbjct: 453 NPCDSETGYCYCKRLVTGQRCDQ-CLPQHWGLSNDLDG 489
Score = 67.4 bits (164), Expect = 9e-12
Identities = 55/301 (18%), Positives = 83/301 (27%), Gaps = 39/301 (12%)
Query: 551 NPQDGTCLCPAGYYGPLCQKRCEFMTYGRNCAQACTCFTENSQGCDIVTGKCICRPGFKG 610
+ + Y + + C + C N + +V G C+CR KG
Sbjct: 233 SRMEIREKYYYAVYDMVVRGNCFCYGHASEC---APVDGVNEEVEGMVHGHCMCRHNTKG 289
Query: 611 HRCETQCSNPN--------TYGEDCSLDCGCNNGGTCNQLDGGCNCGRGYQGKLCTAPCP 662
CE + + C CN + D G C
Sbjct: 290 LNCELCMDFYHDLPWRPAEGRNSNACKKCNCNEHSSSCHFDMAVFLATGNVSGGVCDNCQ 349
Query: 663 EGQYGYNCKEECLTKGQDVPVRTAVSHALKVHMGINARRYVNVRMVATFNTTLYLYLFVN 722
G NC++ Q + + Y V
Sbjct: 350 HNTMGRNCEQCKPFYFQHPERDIRDPNLCE------PCTCDPAGSENGGICDGYTDFSVG 403
Query: 723 LTYGILY-KTLVRLRECEERCPPGTHGPSCINRCRCQ-----------NGAICNPANGQC 770
L G K V C+ C G + S + C+ G C+ G C
Sbjct: 404 LIAGQCRCKLHVEGERCD-VCKEGFYDLSAEDPYGCKSCACNPLGTIPGGNPCDSETGYC 462
Query: 771 LCAPGWMGSVCNVPCTPGMWGQGCTV----PCECFNGAS----CHHVTGECQCEPGFKGQ 822
C G C+ C P WG + PC+C G + C +G+C C P G+
Sbjct: 463 YCKRLVTGQRCDQ-CLPQHWGLSNDLDGCRPCDCDLGGALNNSCSEDSGQCSCLPHMIGR 521
Query: 823 K 823
+
Sbjct: 522 Q 522
Score = 65.1 bits (158), Expect = 4e-11
Identities = 53/307 (17%), Positives = 83/307 (27%), Gaps = 59/307 (19%)
Query: 493 CSQTCLCSKEGSASCSPGSGQCVCRPGGAGQLCDRPCS---------EGRYGQNCTQECR 543
S+ G C+CR G C+ N ++C
Sbjct: 260 ASECAPVDGVNEEVEGMVHGHCMCRHNTKGLNCELCMDFYHDLPWRPAEGRNSNACKKCN 319
Query: 544 CMNGAACNPQDGTCLCPAGYYGPLCQKRCEFMTYGRNCAQACTCFTENSQGCDIVTGKCI 603
C ++ D G C+ T GRNC Q + ++ + +
Sbjct: 320 CNEHSSSCHFDMAVFLATGNVSGGVCDNCQHNTMGRNCEQCKPFYFQHP--ERDIRDPNL 377
Query: 604 CRPGFKGHRCETQCSNPNTYGEDCSLDCGCNNGGTCNQLDGGCNCGRGYQGKLCTAPCPE 663
C P + G + C + + G C C +G+ C C E
Sbjct: 378 CEPC-----------TCDPAGSENGGICDGYTDFSVGLIAGQCRCKLHVEGERCD-VCKE 425
Query: 664 GQYGYNCKEECLTKGQDVPVRTAVSHALKVHMGINARRYVNVRMVATFNTTLYLYLFVNL 723
G Y + ++ K + +
Sbjct: 426 GFYDLSAEDPYGCKSCACNPLGTIPGGNPCD---------------------------SE 458
Query: 724 TYGILYKTLVRLRECEERCPPGTHGPSCIN----RCRCQN----GAICNPANGQCLCAPG 775
T K LV + C+ +C P G S C C C+ +GQC C P
Sbjct: 459 TGYCYCKRLVTGQRCD-QCLPQHWGLSNDLDGCRPCDCDLGGALNNSCSEDSGQCSCLPH 517
Query: 776 WMGSVCN 782
+G CN
Sbjct: 518 MIGRQCN 524
Score = 59.7 bits (144), Expect = 2e-09
Identities = 47/253 (18%), Positives = 62/253 (24%), Gaps = 61/253 (24%)
Query: 2 ECVPVCTDECIRGTCIAPNTCKCEVGFGGPTCNIAKDAKTKPTDTYTFRLMFPQCMDPCP 61
C G C+ G C K + + + P +PC
Sbjct: 326 SCHFDMAVFLATGNVSGGVCDNCQHNTMGRNCEQCKPFYFQHPER---DIRDPNLCEPCT 382
Query: 62 EGTWGKQCVHYCSCPVESMECSRIDGNCSCPPGFRGAKCKERTCPDGLYGEGCDRTCECN 121
G + C I G C C G +C C +G Y
Sbjct: 383 CDPAGSENGGICDGY-TDFSVGLIAGQCRCKLHVEGERCDV--CKEGFYDLSA------- 432
Query: 122 VENTKLCVPVCTDECIRGTCIAPNTCKCEVGFGGPTCNIECPEGHYGPDCKLACQCENGA 181
E P G C G
Sbjct: 433 ---------------------------------------EDPYGCKSCACNPLGTIPGGN 453
Query: 182 GCDPNTGACDCLDGYMGTHCEEVCGPGRFGQNCS----QECQCRN----GAECHPATGEC 233
CD TG C C G C++ C P +G + + C C C +G+C
Sbjct: 454 PCDSETGYCYCKRLVTGQRCDQ-CLPQHWGLSNDLDGCRPCDCDLGGALNNSCSEDSGQC 512
Query: 234 SCQPGFTGSLCEE 246
SC P G C E
Sbjct: 513 SCLPHMIGRQCNE 525
>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion,
pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo
sapiens} PDB: 3k71_B* 3k72_B*
Length = 687
Score = 107 bits (269), Expect = 2e-24
Identities = 62/353 (17%), Positives = 89/353 (25%), Gaps = 39/353 (11%)
Query: 104 TCPDGLYGEGCDRTCECNVENTKLCVPVCTDECIRGTCIAPNTCKCEVGFGGPTCNIECP 163
C +G+ R +C+ + + + +GF P
Sbjct: 363 FCSNGVTHRNQPR-GDCDGVQINVPITFQVKVTATECIQEQSFVIRALGFTDIVTVQVLP 421
Query: 164 EGHYGPDCKLACQCENGAGCDPNTGACDCLDGYMGTHCEEVCGPGRFGQNCSQECQCRNG 223
+ + + G C C GY+G +CE GR Q C+ N
Sbjct: 422 QCECRCRDQSRDRSLCHGKGFLECGICRCDTGYIGKNCECQT-QGRSSQELEGSCRKDNN 480
Query: 224 AECH-----PATGECSCQPGFTGSLCE--ERCPPGTHGPSCINRCRCQNGAICNPANGQC 276
+ G+C C + C T N C G+C
Sbjct: 481 SIICSGLGDCVCGQCLCHTSDVPGKLIYGQYCECDTINCERYNGQVCGGPGRGLCFCGKC 540
Query: 277 LCAPGWMGSVCNVPCTPGMWGQGCTVPCECFNGASCHHVTGECQCEPGFKGQKCMDPCPE 336
C PG+ GS C C G EC C C+C G++ C CP
Sbjct: 541 RCHPGFEGSACQ--CERTTEGCLNPRRVECSGRGRC--RCNVCECHSGYQLPLC-QECP- 594
Query: 337 GTWGKQCVHYCSCPVESMECSRIDGNCSCPPGFRGAKCKERTCPDGLYGEGCDRTCECNV 396
C Y SC G G C CP + C
Sbjct: 595 -GCPSPCGKYISC----------AECLKFEKGPFGKNC-SAACPGLQLSNNPVKGRTCK- 641
Query: 397 ENTKLCHAVTGKCECGPGWDGLTCDRPCPITRWGDN---CSQHCNCKNDALCF 446
C + D + D C + + L F
Sbjct: 642 --------ERDSEGCWVAYTLEQQDGMDRYLIYVDESRECVAGPDGCGENLYF 686
Score = 100 bits (251), Expect = 4e-22
Identities = 55/314 (17%), Positives = 76/314 (24%), Gaps = 42/314 (13%)
Query: 146 TCKCEVGFGGPTCNI-------ECPEGHYGPDCKLACQCENGAGCDPNTGACDCLDGYMG 198
C G + + + G D + +
Sbjct: 361 DSFCSNGVTHRNQPRGDCDGVQINVPITFQVKVTATECIQEQSFVIRALGFTDIVTVQVL 420
Query: 199 THCEEVCGPGRFGQNCSQECQCRNGAECHPATGECSCQPGFTGSLCEERCPPGTHGPSCI 258
CE C C G C C G+ G CE + G
Sbjct: 421 PQCECRCR-----DQSRDRSLCHGKGFL--ECGICRCDTGYIGKNCECQT-QGRSSQELE 472
Query: 259 NRCRCQNGAIC-----NPANGQCLCAPGWMGSVCN--VPCTPGMWGQGCTVPCECFNGAS 311
CR N +I + GQCLC + C C
Sbjct: 473 GSCRKDNNSIICSGLGDCVCGQCLCHTSDVPGKLIYGQYCECDTINCERYNGQVCGGPGR 532
Query: 312 CHHVTGECQCEPGFKGQKCMDPCPEGTWGKQCVHYCSCPVESMECSRIDGNCSCPPGFRG 371
G+C+C PGF+G C C T G C S C C G++
Sbjct: 533 GLCFCGKCRCHPGFEGSACQ--CERTTEGCLNPRRVEC---SGRGRCRCNVCECHSGYQL 587
Query: 372 AKCKERTCPDGLYGEGCDRTCECNVENTKLCHAVTGKCECGPGWDGLTCDRPCPITRWGD 431
C+E C + C + G G C CP + +
Sbjct: 588 PLCQECPG----CPSPCGKYISC-----------AECLKFEKGPFGKNCSAACPGLQLSN 632
Query: 432 NCSQHCNCKNDALC 445
N + CK
Sbjct: 633 NPVKGRTCKERDSE 646
Score = 96.3 bits (239), Expect = 1e-20
Identities = 43/321 (13%), Positives = 73/321 (22%), Gaps = 37/321 (11%)
Query: 15 TCIAPNTCKCEVGFGGPTCNIAKDAKTKPTDTYTFRLMFPQCMDPCPEGTWGKQC----- 69
T C+ ++ QC
Sbjct: 369 THRNQPRGDCDGVQINVPITFQVKVTATECIQEQSFVIRALGFTDIVTVQVLPQCECRCR 428
Query: 70 VHYCSCPVESMECSRIDGNCSCPPGFRGAKCKERTCPDGLYGEGCDRTCECNVENTKLCV 129
+ + G C C G+ G C+ +T G + + +C + + +
Sbjct: 429 DQSRDRSLCHGKGFLECGICRCDTGYIGKNCECQTQ--GRSSQELEGSCRKDNNS---II 483
Query: 130 PVCTDECIRGTCIAPNTCKCEVGFGGPTCNIECPEGHYGPDCKLACQCENGAGCDPNTGA 189
+C+ G C+ + G C + C G
Sbjct: 484 CSGLGDCVCGQCLCHTSDVPGKLIYGQYCEC----DTINCERYNGQVCGGPGRGLCFCGK 539
Query: 190 CDCLDGYMGTHCEEVCGPGRFGQNCSQECQCRNGAECHPATGECSCQPGFTGSLCEERCP 249
C C G+ G+ C+ C G + +C C C C G+ LC+E
Sbjct: 540 CRCHPGFEGSACQ--CERTTEGCLNPRRVECSGRGRCR--CNVCECHSGYQLPLCQECP- 594
Query: 250 PGTHGPSCINRCRCQNGAICNPANGQCLCAPGWMGSVCNVPCTPGMWGQGCTVPCECFNG 309
C C G G C+ C C
Sbjct: 595 --GCPSPCGKYISCAEC---------LKFEKGPFGKNCSAACPGLQLSNNPVKGRTC--- 640
Query: 310 ASCHHVTGECQCEPGFKGQKC 330
C + ++
Sbjct: 641 ----KERDSEGCWVAYTLEQQ 657
Score = 91.7 bits (227), Expect = 3e-19
Identities = 59/335 (17%), Positives = 85/335 (25%), Gaps = 59/335 (17%)
Query: 190 CDCLDGYMGTHCEE-------VCGPGRFGQNCSQECQCRNGAECHPATGECSCQPGFTGS 242
C +G + + P F + + + A G
Sbjct: 362 SFCSNGVTHRNQPRGDCDGVQINVPITFQVKVTATECIQEQSFVIRALGFTDIVTVQVLP 421
Query: 243 LCEERCPPGTHGPSCINRCRCQNGAICNPANGQCLCAPGWMGSVCNVPCTPGMWGQGCTV 302
CE RC +R C G C C G++G C G Q
Sbjct: 422 QCECRC-----RDQSRDRSLCHGKGFLE--CGICRCDTGYIGKNCECQT-QGRSSQELEG 473
Query: 303 PCECFNGASCHH-----VTGECQCEPGFKGQKCM--DPCPEGTWGKQCVHYCSCPVESME 355
C N + V G+C C K + C T + + C
Sbjct: 474 SCRKDNNSIICSGLGDCVCGQCLCHTSDVPGKLIYGQYCECDTINCERYNGQVCG-GPGR 532
Query: 356 CSRIDGNCSCPPGFRGAKCKERTCPDGLYGEGCDRTCECNVENTKLCHAVTGKCECGPGW 415
G C C PGF G+ C+ C G R EC+ C CEC G+
Sbjct: 533 GLCFCGKCRCHPGFEGSACQ---CERTTEGCLNPRRVECSGRGRCRC----NVCECHSGY 585
Query: 416 DGLTCDRPCPITRWGDNCSQHCNCKNDALCFPRNGTNTYQYFFLQSLTLFTFLSLTHSGF 475
C C ++ +C G
Sbjct: 586 QLPLCQECPGC---PSPCGKYISCAECLKF--------------------------EKGP 616
Query: 476 SGRHCEKPCPQGSYGQDCSQTCLCSKEGSASCSPG 510
G++C CP + + C + S C
Sbjct: 617 FGKNCSAACPGLQLSNNPVKGRTCKERDSEGCWVA 651
Score = 88.2 bits (218), Expect = 3e-18
Identities = 51/322 (15%), Positives = 82/322 (25%), Gaps = 45/322 (13%)
Query: 358 RIDGNCSCPPGFRGAKCKERTCPDGLYGEGCDRTCECNVENTKLCHAVTGKCECGPGWDG 417
++ + C G C + + +
Sbjct: 357 KVTYDSFCSNGVTHRNQPRGDCDGVQINVPITFQVKVTATECIQEQSFVIRALGFTDIVT 416
Query: 418 LTCDRPCPITRWGDNCSQHCNCKNDALCFPRNGTNTYQYFFLQSLTLFTFLSLTHSGFSG 477
+ C C ++ +LC + L + +G+ G
Sbjct: 417 VQVLPQC-------ECRCRDQSRDRSLCHGKG-------------FLECGICRCDTGYIG 456
Query: 478 RHCEKPCPQGSYGQDCSQTCLCSKEG---SASCSPGSGQCVCRPGGAGQLCD--RPCSEG 532
++CE G Q+ +C S GQC+C + C
Sbjct: 457 KNCECQTQ-GRSSQELEGSCRKDNNSIICSGLGDCVCGQCLCHTSDVPGKLIYGQYCECD 515
Query: 533 RYGQNCTQECRCMNGAACNPQDGTCLCPAGYYGPLCQKRCEFMTYGRNCAQACTCFTENS 592
C G C C G+ G CQ CE T G + C S
Sbjct: 516 TINCERYNGQVCGGPGRGLCFCGKCRCHPGFEGSACQ--CERTTEGCLNPRRVEC----S 569
Query: 593 QGCDIVTGKCICRPGFKGHRCETQCSNPNTYGEDCSLDCGCNNGGTCNQLDGGCNCGRGY 652
C C G++ C+ P+ C +C + +G
Sbjct: 570 GRGRCRCNVCECHSGYQLPLCQECPGCPS----------PCGKYISCAE---CLKFEKGP 616
Query: 653 QGKLCTAPCPEGQYGYNCKEEC 674
GK C+A CP Q N +
Sbjct: 617 FGKNCSAACPGLQLSNNPVKGR 638
Score = 85.2 bits (210), Expect = 4e-17
Identities = 64/365 (17%), Positives = 92/365 (25%), Gaps = 55/365 (15%)
Query: 314 HVTGECQCEPGFKGQKCMDPCPEGTWGKQCVHYCSCPVESMECSRIDGNCSCPPGFRGAK 373
VT + C G + +G + V + EC + GF
Sbjct: 357 KVTYDSFCSNGVTHRNQPRGDCDGVQINVPIT-FQVKVTATECIQEQSFVIRALGFTDIV 415
Query: 374 CKERTCPDGLYGEGCDRTCECNVENTKLCHA----VTGKCECGPGWDGLTCDRPCPITRW 429
+ C+ C + LCH G C C G+ G C+ R
Sbjct: 416 TVQ-------VLPQCECRCRDQSRDRSLCHGKGFLECGICRCDTGYIGKNCECQTQ-GRS 467
Query: 430 GDNCSQHCNCKNDALCFPRNGTNTYQYFFLQSLTLFTFLSLTHSGFSGRHCE--KPCPQG 487
C N+++ G L H+ + C
Sbjct: 468 SQELEGSCRKDNNSIICSGLGD------------CVCGQCLCHTSDVPGKLIYGQYCECD 515
Query: 488 SYGQDCSQTCLCSKEGSASCSPGSGQCVCRPGGAGQLCDRPCSEGRYGQNCTQECRCMNG 547
+ + +C G C G+C C PG G C C G + C
Sbjct: 516 TINCERYNGQVCGGPGRGLCF--CGKCRCHPGFEGSACQ--CERTTEGCLNPRRVECSGR 571
Query: 548 AACNPQDGTCLCPAGYYGPLCQKRCEFMTYGRNCAQACTCFTENSQGCDIVTGKCICRPG 607
C C C +GY PLCQ+ C + +C G
Sbjct: 572 GRCR--CNVCECHSGYQLPLCQECP---GCPSPCGKYISC-----------AECLKFEKG 615
Query: 608 FKGHRCETQCSNPNTYGEDCSLDCGCNNGGTCNQLDGGCNCGRGYQGKLCTAPCPEGQYG 667
G C C L G TC + C Y + Y
Sbjct: 616 PFGKNCSAACPG-------LQLSNNPVKGRTCKE-RDSEGCWVAYTLEQQDGMDRYLIYV 667
Query: 668 YNCKE 672
+E
Sbjct: 668 DESRE 672
Score = 76.3 bits (187), Expect = 2e-14
Identities = 50/352 (14%), Positives = 74/352 (21%), Gaps = 60/352 (17%)
Query: 290 PCTPGMWGQGCTVPCECFNGASCHHVTGECQCEPGFKGQKCMDPCPEGTWGKQCVHYCSC 349
N V + Q + C C
Sbjct: 366 NGVTHRNQPRGDCDGVQINVPITFQVKVTATECIQEQSFVIRALGFTDIVTVQVLPQCEC 425
Query: 350 PVESMECSR---------IDGNCSCPPGFRGAKCKERTCPDGLYGEGCDRTCECNVENTK 400
R G C C G+ G C+ +T G + + +C + +
Sbjct: 426 RCRDQSRDRSLCHGKGFLECGICRCDTGYIGKNCECQTQ--GRSSQELEGSCRKDNNSII 483
Query: 401 ---LCHAVTGKCECGPGWDGLTCD--RPCPITRWGDNCSQHCNCKNDALCFPRNGTNTYQ 455
L V G+C C + C C G
Sbjct: 484 CSGLGDCVCGQCLCHTSDVPGKLIYGQYCECDTINCERYNGQVCGGPGRGLCFCGK---- 539
Query: 456 YFFLQSLTLFTFLSLTHSGFSGRHCEKPCPQGSYGQDCSQTCLCSKEGSASCSPGSGQCV 515
H GF G C+ C + + G + CS G C C
Sbjct: 540 -------------CRCHPGFEGSACQ--CERTTEGCLNPRRVECSGRGRCRC----NVCE 580
Query: 516 CRPGGAGQLCDRPCSEGRYGQNCTQECRCMNGAACNPQDGTCLCPAGYYGPLCQKRCEFM 575
C G LC + C +C G +G C C +
Sbjct: 581 CHSGYQLPLCQ---------ECPGCPSPCGKYISCA---ECLKFEKGPFGKNCSAACPGL 628
Query: 576 TYGRNCAQACTCFTENSQGCDIVTGKCICRPGFKGHRCETQCSNPNTYGEDC 627
N + TC C + + + E
Sbjct: 629 QLSNNPVKGRTC---------KERDSEGCWVAYTLEQQDGMDRYLIYVDESR 671
Score = 65.5 bits (159), Expect = 4e-11
Identities = 46/278 (16%), Positives = 72/278 (25%), Gaps = 63/278 (22%)
Query: 2 ECVPVCTDECIRGTCIAPNTCKCEVGFGGPTCNIAKDAKTKPTDTYTFRLMFPQCMDP-- 59
C + C+C+ G+ G C ++ + R +
Sbjct: 428 RDQSRDRSLCHGKGFLECGICRCDTGYIGKNCECQTQGRSSQELEGSCRKDNNSIICSGL 487
Query: 60 ---------CPEGTWGKQCVHYCSCPVESMECSR--------------IDGNCSCPPGFR 96
C + ++ C +++ C R G C C PGF
Sbjct: 488 GDCVCGQCLCHTSDVPGKLIYGQYCECDTINCERYNGQVCGGPGRGLCFCGKCRCHPGFE 547
Query: 97 GAKCKERTCPDGLYGEGCDRTCECNVENTKLCVPVCTDECIRGTCIAPNTCKCEVGFGGP 156
G+ C+ C G R EC+ RG C N C+C G+ P
Sbjct: 548 GSACQ---CERTTEGCLNPRRVECSG---------------RGRCR-CNVCECHSGYQLP 588
Query: 157 TCNIECPEGHYGPDCKLACQCENGAGCDPNTGACDCLDGYMGTHCEEVCGPGRFGQNCSQ 216
C ECP C C G G +C C + N +
Sbjct: 589 LCQ-ECPG--CPSPCGKYISCAEC---------LKFEKGPFGKNCSAACPGLQLSNNPVK 636
Query: 217 ECQCRNGAECHPATGECSCQPGFTGSLCEERCPPGTHG 254
C+ C +T + +
Sbjct: 637 GRTCKE-------RDSEGCWVAYTLEQQDGMDRYLIYV 667
Score = 60.5 bits (146), Expect = 2e-09
Identities = 38/222 (17%), Positives = 69/222 (31%), Gaps = 15/222 (6%)
Query: 466 TFLSLTHSGFSGRHCEKPCPQGSYGQDCSQTCLCSKEGSASCSPGSGQCVCRPGGAGQLC 525
T+ S +G + R+ + G + + +A+ V R G
Sbjct: 359 TYDSFCSNGVTHRNQPRGD---CDGVQINVPITFQVKVTATECIQEQSFVIRALG---FT 412
Query: 526 DRPCSEGRYGQNCTQECRCMNGAACN----PQDGTCLCPAGYYGPLCQKRCEFMTYGRNC 581
D + C + + + C+ + G C C GY G C+ + + +
Sbjct: 413 DIVTVQVLPQCECRCRDQSRDRSLCHGKGFLECGICRCDTGYIGKNCECQTQG-RSSQEL 471
Query: 582 AQACTCFTEN---SQGCDIVTGKCICRPGFKGHRCETQCSNP-NTYGEDCSLDCGCNNGG 637
+C + S D V G+C+C + +T + C G
Sbjct: 472 EGSCRKDNNSIICSGLGDCVCGQCLCHTSDVPGKLIYGQYCECDTINCERYNGQVCGGPG 531
Query: 638 TCNQLDGGCNCGRGYQGKLCTAPCPEGQYGYNCKEECLTKGQ 679
G C C G++G C + EC +G+
Sbjct: 532 RGLCFCGKCRCHPGFEGSACQCERTTEGCLNPRRVECSGRGR 573
Score = 47.4 bits (112), Expect = 2e-05
Identities = 20/83 (24%), Positives = 26/83 (31%), Gaps = 4/83 (4%)
Query: 740 ERCPPGTHGPSCINRCRCQNGAICNPANGQCLCAPGWMGSVCNVPCTPGMWGQGCTVPCE 799
+ C T N C G+C C PG+ GS C C G E
Sbjct: 510 QYCECDTINCERYNGQVCGGPGRGLCFCGKCRCHPGFEGSACQ--CERTTEGCLNPRRVE 567
Query: 800 CFNGASCHHVTGECQCEPGFKGQ 822
C C C+C G++
Sbjct: 568 CSGRGRC--RCNVCECHSGYQLP 588
Score = 44.3 bits (104), Expect = 1e-04
Identities = 25/202 (12%), Positives = 44/202 (21%), Gaps = 15/202 (7%)
Query: 491 QDCSQTCLCSKEGSASCSPGSGQCVCRPGGAGQLCDRPCSEGRYGQNCTQECRCMNGAAC 550
S + C G + R +G + C
Sbjct: 339 NKLSSRVFLDHNALPDTLKVTYDSFCSNGVTHRNQPRGDCDGVQINVPITFQVKVTATEC 398
Query: 551 NPQDGTCLCPAGYYGPLCQKRCEFMTYGRNCAQACTCFTENSQGCDIVTGKCICRPGFKG 610
+ + G+ + + C + + G C C G+ G
Sbjct: 399 IQEQSFVIRALGFTDIVTVQVLPQCEC--RCRDQSRDRSLCHGKGFLECGICRCDTGYIG 456
Query: 611 HRCETQCSNPNTYGEDCSLDCGCNNGGTCNQLDGGCNCGR-----------GYQGKLCTA 659
CE C ++ C +N G C CG+ G+ C
Sbjct: 457 KNCE--CQTQGRSSQELEGSCRKDNNSIICSGLGDCVCGQCLCHTSDVPGKLIYGQYCEC 514
Query: 660 PCPEGQYGYNCKEECLTKGQDV 681
+ +G
Sbjct: 515 DTINCERYNGQVCGGPGRGLCF 536
Score = 38.5 bits (89), Expect = 0.008
Identities = 19/87 (21%), Positives = 24/87 (27%), Gaps = 10/87 (11%)
Query: 737 ECEERCPPGTHGPSCINRCRCQNGAICNPANGQCLCAPGWMGSVCN--VPCTPGMWGQGC 794
E E C + C C GQCLC + C
Sbjct: 470 ELEGSCRKDNNSIICSGLGDCV--------CGQCLCHTSDVPGKLIYGQYCECDTINCER 521
Query: 795 TVPCECFNGASCHHVTGECQCEPGFKG 821
C G+C+C PGF+G
Sbjct: 522 YNGQVCGGPGRGLCFCGKCRCHPGFEG 548
Score = 37.4 bits (86), Expect = 0.020
Identities = 18/95 (18%), Positives = 29/95 (30%), Gaps = 10/95 (10%)
Query: 738 CEERCPPGTHGPSCINRCRCQNGAICN----PANGQCLCAPGWMGSVCNVPCTPGMWGQG 793
+ C R + ++ ++C+ G C C G++G C G Q
Sbjct: 412 TDIVTVQVLPQCECRCRDQSRDRSLCHGKGFLECGICRCDTGYIGKNCECQT-QGRSSQE 470
Query: 794 CTVPCECFNGASCHH-----VTGECQCEPGFKGQK 823
C N + V G+C C K
Sbjct: 471 LEGSCRKDNNSIICSGLGDCVCGQCLCHTSDVPGK 505
Score = 36.6 bits (84), Expect = 0.033
Identities = 13/84 (15%), Positives = 20/84 (23%), Gaps = 8/84 (9%)
Query: 741 RCPPGTHGPSCINRCRCQNGAICNPANGQCL-CAPGWMGSVCNVPCTPGMWGQGCTVPCE 799
C G P C C + + +CL G G C+ C
Sbjct: 580 ECHSGYQLPLCQECPGCPSPCGKYISCAECLKFEKGPFGKNCSAACPGLQLSNNPVKGRT 639
Query: 800 CFNGASCHHVTGECQCEPGFKGQK 823
C C + ++
Sbjct: 640 C-------KERDSEGCWVAYTLEQ 656
>2ygq_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling
pathway, WNT antagonist, MO cancer, glycosaminoglycan;
HET: PCF NAG FUC SCR; 3.95A {Homo sapiens}
Length = 324
Score = 81.4 bits (201), Expect = 9e-17
Identities = 60/279 (21%), Positives = 87/279 (31%), Gaps = 56/279 (20%)
Query: 67 KQCVHYCSCPVESMECSRIDGNCSCPPGFRGAKCKERTCPDGLYGEGCDRTCECNVENTK 126
K V P + +T + ++ + C +
Sbjct: 99 KASVVQVGFPCLGKQDGVAAFEVDVIVMNSEGNTILKTPQNAIFFKTCQQAE-------- 150
Query: 127 LCVPVCTDECIRGTCIAPNTCKCEVGFGGPTCNIECPEGHYGPDCKLACQCENGAGCDPN 186
C C + G C C+C GF GP C +C NG C
Sbjct: 151 -CPGGCRN---GGFCNERRICECPDGFHGPHCEKALCT----------PRCMNGGLCV-T 195
Query: 187 TGACDCLDGYMGTHCEEVCGPGRFGQNCSQECQCRNGAECHPATGECSCQPGFTGSLCEE 246
G C C G+ G +C++ C NG C G+C C PG G CE
Sbjct: 196 PGFCICPPGFYGVNCDKANCS----------TTCFNGGTCF-YPGKCICPPGLEGEQCEI 244
Query: 247 RCPPGTHGPSCINRCRCQNGAICNPANGQCLCAPGWMGSVCNVPCTPGMWGQGCTVPCEC 306
P C+NG C +C C+ G+ G +C+ P C
Sbjct: 245 SKCP----------QPCRNGGKCI-GKSKCKCSKGYQGDLCSKPVC----------EPGC 283
Query: 307 FNGASCHHVTGECQCEPGFKGQKCMDPCPEGTWGKQCVH 345
+CH +CQC+ G+ G+ C G + H
Sbjct: 284 GAHGTCHE-PNKCQCQEGWHGRHCNKRYEASLIGTKHHH 321
Score = 77.2 bits (190), Expect = 2e-15
Identities = 63/275 (22%), Positives = 88/275 (32%), Gaps = 52/275 (18%)
Query: 166 HYGPDCKLACQCENGAGCDPNTGACDCLDGYMGTHCEEVCGPGRFGQNCSQEC---QCRN 222
H ++ C + G + F + C Q CRN
Sbjct: 98 HKASVVQVGFPCLGKQDGVAAFEVDVIVMNSEGNTILKTPQNAIFFKTCQQAECPGGCRN 157
Query: 223 GAECHPATGECSCQPGFTGSLCEERCPPGTHGPSCINRCRCQNGAICNPANGQCLCAPGW 282
G C+ C C GF G CE+ RC NG +C G C+C PG+
Sbjct: 158 GGFCN-ERRICECPDGFHGPHCEKALCT----------PRCMNGGLCV-TPGFCICPPGF 205
Query: 283 MGSVCNVPCTPGMWGQGCTVPCECFNGASCHHVTGECQCEPGFKGQKCMDPCPEGTWGKQ 342
G C+ CFNG +C + G+C C PG +G++C
Sbjct: 206 YGVNCDKANC----------STTCFNGGTCFY-PGKCICPPGLEGEQCEISK-------- 246
Query: 343 CVHYCSCPVESMECSRIDGNCSCPPGFRGAKCKERTCPDGLYGEGCDRTCECNVENTKLC 402
C P + C C G++G C + C G G TC
Sbjct: 247 ----CPQPCRNGGKCIGKSKCKCSKGYQGDLCSKPVCEPGCGAHG---TCH--------- 290
Query: 403 HAVTGKCECGPGWDGLTCDRPCPITRWGDNCSQHC 437
KC+C GW G C++ + G H
Sbjct: 291 --EPNKCQCQEGWHGRHCNKRYEASLIGTKHHHHH 323
Score = 57.2 bits (138), Expect = 9e-09
Identities = 54/216 (25%), Positives = 71/216 (32%), Gaps = 48/216 (22%)
Query: 477 GRHCEKPCPQGSYGQDCSQ-TCLCSKEGSASCSPGSGQCVCRPGGAGQLCDRPCSEGRYG 535
G K + + C Q C C+ C C G G C++
Sbjct: 130 GNTILKTPQNAIFFKTCQQAECPGGCRNGGFCNER-RICECPDGFHGPHCEKALCT---- 184
Query: 536 QNCTQECRCMNGAACNPQDGTCLCPAGYYGPLCQKRCEFMTYGRNCAQACTCFTENSQGC 595
RCMNG C G C+CP G+YG C K C TC
Sbjct: 185 ------PRCMNGGLCV-TPGFCICPPGFYGVNCDKANC----STTCFNGGTC-------- 225
Query: 596 DIVTGKCICRPGFKGHRCET-----------QCSNPNT-------YGEDCSL---DCGCN 634
GKCIC PG +G +CE +C + G+ CS + GC
Sbjct: 226 -FYPGKCICPPGLEGEQCEISKCPQPCRNGGKCIGKSKCKCSKGYQGDLCSKPVCEPGCG 284
Query: 635 NGGTCNQLDGGCNCGRGYQGKLCTAPCPEGQYGYNC 670
GTC++ C C G+ G+ C G
Sbjct: 285 AHGTCHE-PNKCQCQEGWHGRHCNKRYEASLIGTKH 319
Score = 52.9 bits (127), Expect = 2e-07
Identities = 47/204 (23%), Positives = 63/204 (30%), Gaps = 50/204 (24%)
Query: 493 CSQTCLCSKEGSASCSPGSGQCVCRPGGAGQLCDRPCSEGRYGQNCTQEC---RCMNGAA 549
C + + V G L + + C Q C NG
Sbjct: 103 VQVGFPCLGKQDGVAAFEVDVIVMNSEGNTILKT--PQNAIFFKTCQQAECPGGCRNGGF 160
Query: 550 CNPQDGTCLCPAGYYGPLCQKRCEFMTYGRNCAQACTCFTENSQGCDIVTGKCICRPGFK 609
CN + C CP G++GP C+K C C + G + G CIC PGF
Sbjct: 161 CN-ERRICECPDGFHGPHCEKAL--------CTPRC-----MNGGLCVTPGFCICPPGFY 206
Query: 610 GHRCETQCSNPNTYGEDCSLDCGCNNGGTCNQLDGGCNCGRGYQGKLCTAP--------- 660
G C+ + C NGGTC G C C G +G+ C
Sbjct: 207 GVNCDKANCSTT-----------CFNGGTCFY-PGKCICPPGLEGEQCEISKCPQPCRNG 254
Query: 661 ----------CPEGQYGYNCKEEC 674
C +G G C +
Sbjct: 255 GKCIGKSKCKCSKGYQGDLCSKPV 278
Score = 51.0 bits (122), Expect = 7e-07
Identities = 40/188 (21%), Positives = 50/188 (26%), Gaps = 30/188 (15%)
Query: 60 CPEGTWGKQC-VHYCSCPVESMECSRIDGNCSCPPGFRGAKCKERTCPDGLYGEGC---D 115
+ K C C + C CP GF G C++ C G
Sbjct: 137 PQNAIFFKTCQQAECPGGCRNGGFCNERRICECPDGFHGPHCEKALCTPRCMNGGLCVTP 196
Query: 116 RTCECNVENT-KLC-VPVCTDECI-RGTCIAPNTCKCEVGFGGPTCNIE----------- 161
C C C C+ C GTC P C C G G C I
Sbjct: 197 GFCICPPGFYGVNCDKANCSTTCFNGGTCFYPGKCICPPGLEGEQCEISKCPQPCRNGGK 256
Query: 162 --------CPEGHYGPDCKL---ACQCENGAGCDPNTGACDCLDGYMGTHCEEVCGPGRF 210
C +G+ G C C C C C +G+ G HC +
Sbjct: 257 CIGKSKCKCSKGYQGDLCSKPVCEPGCGAHGTCH-EPNKCQCQEGWHGRHCNKRYEASLI 315
Query: 211 GQNCSQEC 218
G
Sbjct: 316 GTKHHHHH 323
Score = 49.9 bits (119), Expect = 2e-06
Identities = 55/297 (18%), Positives = 79/297 (26%), Gaps = 88/297 (29%)
Query: 343 CVHYCSCPVESMECSRI--DGNCSCPPGFRGAKCKERTCPDGLYGEGCDRTCECNVENTK 400
+ V+ + + + C++ CP G G C
Sbjct: 113 QDGVAAFEVDVIVMNSEGNTILKTPQNAIFFKTCQQAECPGGCRNGG---FCN------- 162
Query: 401 LCHAVTGKCECGPGWDGLTCDRPCPITRWGDNCSQHCNCKNDALCFPRNGTNTYQYFFLQ 460
CEC G+ G C++ C C C
Sbjct: 163 ----ERRICECPDGFHGPHCEKALCT----PRCMNGGLCVTPGFC--------------- 199
Query: 461 SLTLFTFLSLTHSGFSGRHCEKPCPQGSYGQDCSQTCLCSKEGSASCSPGSGQCVCRPGG 520
+ GF G +C+K CS TC +C G+C+C PG
Sbjct: 200 ---------ICPPGFYGVNCDKAN--------CSTTCF----NGGTCF-YPGKCICPPGL 237
Query: 521 AGQLCDRPCSEGRYGQNCTQECRCMNGAACNPQDGTCLCPAGYYGPLCQKRCEFMTYGRN 580
G+ C+ C NG C C C GY G LC K
Sbjct: 238 EGEQCEISKCP----------QPCRNGGKCI-GKSKCKCSKGYQGDLCSKPVCE----PG 282
Query: 581 CAQACTCFTENSQGCDIVTGKCICRPGFKGHRCETQCSNPNTYGEDCSLDCGCNNGG 637
C TC KC C+ G+ G C + E + ++
Sbjct: 283 CGAHGTC---------HEPNKCQCQEGWHGRHCNKRY-------EASLIGTKHHHHH 323
Score = 46.0 bits (109), Expect = 3e-05
Identities = 28/147 (19%), Positives = 36/147 (24%), Gaps = 15/147 (10%)
Query: 518 PGGAGQLCDRPCSEGRYGQNCT---QECRCMNGAACNPQDGTCLCPAGYYGPLCQKRCEF 574
G G + C+ + G K +
Sbjct: 80 KGIMADPTVNVPLLGTVPHKASVVQVGFPCLGKQDGVAAFEVDVIVMNSEGNTILKTPQN 139
Query: 575 MTYGRNCAQACTCFTENSQGCDIVTGKCICRPGFKGHRCETQCSNPNTYGEDCSLDCGCN 634
+ + C QA + G C C GF G CE P C
Sbjct: 140 AIFFKTCQQAECPGGCRNGGFCNERRICECPDGFHGPHCEKALCTP-----------RCM 188
Query: 635 NGGTCNQLDGGCNCGRGYQGKLCTAPC 661
NGG C G C C G+ G C
Sbjct: 189 NGGLCVT-PGFCICPPGFYGVNCDKAN 214
Score = 44.8 bits (106), Expect = 8e-05
Identities = 54/186 (29%), Positives = 66/186 (35%), Gaps = 32/186 (17%)
Query: 4 VPVCTDECI-RGTCIAPNTCKCEVGFGGPTCNIAKDAKTKPTDTYTFRLMFPQCMD---- 58
C C G C C+C GF GP C A L P+CM+
Sbjct: 148 QAECPGGCRNGGFCNERRICECPDGFHGPHCEKA--------------LCTPRCMNGGLC 193
Query: 59 ------PCPEGTWGKQC-VHYCSCPVESMECSRIDGNCSCPPGFRGAKCKERTCPDGLYG 111
CP G +G C CS + G C CPPG G +C+ CP
Sbjct: 194 VTPGFCICPPGFYGVNCDKANCSTTCFNGGTCFYPGKCICPPGLEGEQCEISKCPQPCRN 253
Query: 112 EGC---DRTCECNVENT-KLC-VPVCTDECI-RGTCIAPNTCKCEVGFGGPTCNIECPEG 165
G C+C+ LC PVC C GTC PN C+C+ G+ G CN
Sbjct: 254 GGKCIGKSKCKCSKGYQGDLCSKPVCEPGCGAHGTCHEPNKCQCQEGWHGRHCNKRYEAS 313
Query: 166 HYGPDC 171
G
Sbjct: 314 LIGTKH 319
Score = 39.8 bits (93), Expect = 0.003
Identities = 30/85 (35%), Positives = 40/85 (47%), Gaps = 15/85 (17%)
Query: 741 RCPPGTHGPSC---INRCRCQNGAICNPANGQCLCAPGWMGSVCNVPCTPGMWGQGCTVP 797
CP G HGP C + RC NG +C G C+C PG+ G C+
Sbjct: 168 ECPDGFHGPHCEKALCTPRCMNGGLCV-TPGFCICPPGFYGVNCDKANC----------S 216
Query: 798 CECFNGASCHHVTGECQCEPGFKGQ 822
CFNG +C + G+C C PG +G+
Sbjct: 217 TTCFNGGTCFY-PGKCICPPGLEGE 240
Score = 37.1 bits (86), Expect = 0.019
Identities = 22/85 (25%), Positives = 25/85 (29%), Gaps = 15/85 (17%)
Query: 741 RCPPGTHGPSCINRC---RCQNGAICNPANGQCLCAPGWMGSVCNVPCTPGMWGQGCTVP 797
+C C+NG CN C C G+ G C
Sbjct: 136 TPQNAIFFKTCQQAECPGGCRNGGFCN-ERRICECPDGFHGPHCEKALC----------T 184
Query: 798 CECFNGASCHHVTGECQCEPGFKGQ 822
C NG C G C C PGF G
Sbjct: 185 PRCMNGGLCVT-PGFCICPPGFYGV 208
Score = 36.8 bits (85), Expect = 0.022
Identities = 26/84 (30%), Positives = 35/84 (41%), Gaps = 15/84 (17%)
Query: 742 CPPGTHGPSC---INRCRCQNGAICNPANGQCLCAPGWMGSVCNVPCTPGMWGQGCTVPC 798
CPPG +G +C C NG C G+C+C PG G C + P
Sbjct: 201 CPPGFYGVNCDKANCSTTCFNGGTCF-YPGKCICPPGLEGEQCEISKC----------PQ 249
Query: 799 ECFNGASCHHVTGECQCEPGFKGQ 822
C NG C +C+C G++G
Sbjct: 250 PCRNGGKCIG-KSKCKCSKGYQGD 272
Score = 36.4 bits (84), Expect = 0.032
Identities = 26/85 (30%), Positives = 39/85 (45%), Gaps = 15/85 (17%)
Query: 741 RCPPGTHGPSC-INRC--RCQNGAICNPANGQCLCAPGWMGSVCNVPCTPGMWGQGCTVP 797
CPPG G C I++C C+NG C +C C+ G+ G +C+ P
Sbjct: 232 ICPPGLEGEQCEISKCPQPCRNGGKCI-GKSKCKCSKGYQGDLCSKPVC----------E 280
Query: 798 CECFNGASCHHVTGECQCEPGFKGQ 822
C +CH +CQC+ G+ G+
Sbjct: 281 PGCGAHGTCHE-PNKCQCQEGWHGR 304
Score = 32.1 bits (73), Expect = 0.76
Identities = 13/51 (25%), Positives = 17/51 (33%), Gaps = 4/51 (7%)
Query: 741 RCPPGTHGPSC---INRCRCQNGAICNPANGQCLCAPGWMGSVCNVPCTPG 788
+C G G C + C C+ +C C GW G CN
Sbjct: 264 KCSKGYQGDLCSKPVCEPGCGAHGTCH-EPNKCQCQEGWHGRHCNKRYEAS 313
>2vj2_A Jagged-1; signalling, polymorphism, glycoprotein, extracellular,
developmental protein, notch signaling pathway, EGF,
DSL, notch, calcium, membrane; 2.50A {Homo sapiens} PDB:
2kb9_A
Length = 169
Score = 60.1 bits (146), Expect = 1e-10
Identities = 34/176 (19%), Positives = 51/176 (28%), Gaps = 36/176 (20%)
Query: 136 CIRGTCIAPNTCKCEVGFGGPTCNIECPEGHYGPDCKLACQCENGAGCDPNTGACDCLDG 195
G+ + C+ + G CN C G G C++G
Sbjct: 8 HHHGSIEGRSAVTCDDYYYGFGCNKFC----------RPRDDFFGHYACDQNGNKTCMEG 57
Query: 196 YMGTHCEE--------------------VCGPGRFGQNCSQ--ECQCRNGAECHPATGEC 233
+MG C C G G C + C+ +C
Sbjct: 58 WMGPECNRAICRQGCSPKHGSCKLPGDCRCQYGWQGLYCDKCIPHPGCVHGICN-EPWQC 116
Query: 234 SCQPGFTGSLCEERCPPGTHGPSCINRCRCQNGAICNPANGQCLCAPGWMGSVCNV 289
C+ + G LC++ C+N C N P QC C G+ G C +
Sbjct: 117 LCETNWGGQLCDKDLNYCGTHQPCLNGGTCSNT---GPDKYQCSCPEGYSGPNCEI 169
Score = 49.3 bits (118), Expect = 5e-07
Identities = 36/177 (20%), Positives = 49/177 (27%), Gaps = 38/177 (21%)
Query: 220 CRNGAECHPATGECSCQPGFTGSLCEERCPPGTHGPSCINRCRCQNGAICNPANGQCLCA 279
+ +C + G C + C P G NG C
Sbjct: 7 HHHHGSIE-GRSAVTCDDYYYGFGCNKFCRP----------RDDFFGHYACDQNGNKTCM 55
Query: 280 PGWMGSVCNVP--------------------CTPGMWGQGCT--VPCECFNGASCHHVTG 317
GWMG CN C G G C +P C+
Sbjct: 56 EGWMGPECNRAICRQGCSPKHGSCKLPGDCRCQYGWQGLYCDKCIPHPGCVHGICNE-PW 114
Query: 318 ECQCEPGFKGQKCMDPCPEGTWGKQCVHYCSCPVESMECSRIDGNCSCPPGFRGAKC 374
+C CE + GQ C + C++ +C CSCP G+ G C
Sbjct: 115 QCLCETNWGGQLCDKDLNYCGTHQPCLNGGTC----SNTGPDKYQCSCPEGYSGPNC 167
Score = 47.7 bits (114), Expect = 2e-06
Identities = 31/138 (22%), Positives = 45/138 (32%), Gaps = 28/138 (20%)
Query: 529 CSEGRYGQNCTQECR---CMNGAACNPQDGTCLCPAGYYGPLCQKRCEFMTYGRNCAQAC 585
C + YG C + CR G Q+G C G+ GP C + C
Sbjct: 21 CDDYYYGFGCNKFCRPRDDFFGHYACDQNGNKTCMEGWMGPECNRAI------------C 68
Query: 586 TCFTENSQGCDIVTGKCICRPGFKGHRCETQCSNPNTYGEDCSLDCGCNNGGTCNQLDGG 645
G + G C C+ G++G C+ +P G CN+
Sbjct: 69 RQGCSPKHGSCKLPGDCRCQYGWQGLYCDKCIPHP------------GCVHGICNE-PWQ 115
Query: 646 CNCGRGYQGKLCTAPCPE 663
C C + G+LC
Sbjct: 116 CLCETNWGGQLCDKDLNY 133
Score = 46.6 bits (111), Expect = 5e-06
Identities = 40/194 (20%), Positives = 59/194 (30%), Gaps = 35/194 (18%)
Query: 11 CIRGTCIAPNTCKCEVGFGGPTCNIAKDAKTKPTDTYTFRLMFPQCMDPCPEGTWGKQC- 69
G+ + C+ + G CN + Y C EG G +C
Sbjct: 8 HHHGSIEGRSAVTCDDYYYGFGCNKFCRPRDDFFGHYACDQNG-NKT--CMEGWMGPECN 64
Query: 70 VHYCSC-PVESMECSRIDGNCSCPPGFRGAKCKERTCPDGLYGEGCDRTCECNVENTKLC 128
C ++ G+C C G++G C + G
Sbjct: 65 RAICRQGCSPKHGSCKLPGDCRCQYGWQGLYCDKCIPHPG-------------------- 104
Query: 129 VPVCTDECIRGTCIAPNTCKCEVGFGGPTCNIECPEGHYGPDCKLACQCENGAGCDPNTG 188
C+ G C P C CE +GG C+ + C C N P+
Sbjct: 105 -------CVHGICNEPWQCLCETNWGGQLCDKDLNYCGTHQPCLNGGTCSNT---GPDKY 154
Query: 189 ACDCLDGYMGTHCE 202
C C +GY G +CE
Sbjct: 155 QCSCPEGYSGPNCE 168
Score = 38.5 bits (90), Expect = 0.003
Identities = 33/154 (21%), Positives = 44/154 (28%), Gaps = 29/154 (18%)
Query: 484 CPQGSYGQDCSQTCLCS-KEGSASCSPGSGQCVCRPGGAGQLCDRP-------------- 528
C YG C++ C +G C G G C+R
Sbjct: 21 CDDYYYGFGCNKFCRPRDDFFGHYACDQNGNKTCMEGWMGPECNRAICRQGCSPKHGSCK 80
Query: 529 ------CSEGRYGQNCTQECR--CMNGAACNPQDGTCLCPAGYYGPLCQKRCEFMTYGRN 580
C G G C + CN + CLC + G LC K + +
Sbjct: 81 LPGDCRCQYGWQGLYCDKCIPHPGCVHGICN-EPWQCLCETNWGGQLCDKDLNYCGTHQP 139
Query: 581 CAQACTCFTENSQGCDIVTGKCICRPGFKGHRCE 614
C TC +C C G+ G CE
Sbjct: 140 CLNGGTCSNTGPDK-----YQCSCPEGYSGPNCE 168
Score = 35.8 bits (83), Expect = 0.019
Identities = 24/85 (28%), Positives = 31/85 (36%), Gaps = 13/85 (15%)
Query: 741 RCPPGTHGPSCINRCR---CQNGAICNPANGQCLCAPGWMGSVCNVPCTPGMWGQGCTVP 797
C +G C CR G NG C GWMG CN C
Sbjct: 20 TCDDYYYGFGCNKFCRPRDDFFGHYACDQNGNKTCMEGWMGPECNRAI--------CRQG 71
Query: 798 CECFNGASCHHVTGECQCEPGFKGQ 822
C SC + G+C+C+ G++G
Sbjct: 72 C-SPKHGSC-KLPGDCRCQYGWQGL 94
Score = 33.1 bits (76), Expect = 0.16
Identities = 12/66 (18%), Positives = 16/66 (24%), Gaps = 11/66 (16%)
Query: 757 CQNGAICNPANGQCLCAPGWMGSVCNVPCTPGMWGQGCTVPCECFNGASCHHVTGECQCE 816
+ C + G CN C P + F G G C
Sbjct: 7 HHHHGSIE-GRSAVTCDDYYYGFGCNKFCR----------PRDDFFGHYACDQNGNKTCM 55
Query: 817 PGFKGQ 822
G+ G
Sbjct: 56 EGWMGP 61
Score = 32.7 bits (75), Expect = 0.24
Identities = 43/221 (19%), Positives = 59/221 (26%), Gaps = 59/221 (26%)
Query: 306 CFNGASCHHVTGECQCEPGFKGQKCMDPCPEGTWGKQCVHYCSCPVESMECSRIDGNCSC 365
+ S C+ + G C C +GN +C
Sbjct: 7 HHHHGSIEG-RSAVTCDDYYYGFGCNKFCR-----------PRDDFFGHYACDQNGNKTC 54
Query: 366 PPGFRGAKCKERTCPDGLYGEGCDRTCECNVENTKLCHAVTGKCECGPGWDGLTCDRPCP 425
G+ G +C C G +C+ G C C GW GL CD+ P
Sbjct: 55 MEGWMGPECNRAICRQGC--SPKHGSCKLP-----------GDCRCQYGWQGLYCDKCIP 101
Query: 426 ITRWGDNCSQHCNCKNDALCFPRNGTNTYQYFFLQSLTLFTFLSLTHSGFSGRHCEKPCP 485
H C C L + + G+ C+K
Sbjct: 102 -----HPGCVHGICNEPWQC------------------------LCETNWGGQLCDKDLN 132
Query: 486 QGSYGQDCSQTCLCSKEGSASCSPGSGQCVCRPGGAGQLCD 526
Q C CS G P QC C G +G C+
Sbjct: 133 YCGTHQPCLNGGTCSNTG-----PDKYQCSCPEGYSGPNCE 168
Score = 32.0 bits (73), Expect = 0.41
Identities = 25/88 (28%), Positives = 33/88 (37%), Gaps = 14/88 (15%)
Query: 741 RCPPGTHGPSCINRCR---CQNGAICNPANGQCLCAPGWMGSVCNVPCTPGMWGQGCTVP 797
RC G G C ++C ICN QCLC W G +C+ C
Sbjct: 86 RCQYGWQGLYC-DKCIPHPGCVHGICN-EPWQCLCETNWGGQLCDKDLNY------CGTH 137
Query: 798 CECFNGASCHHV---TGECQCEPGFKGQ 822
C NG +C + +C C G+ G
Sbjct: 138 QPCLNGGTCSNTGPDKYQCSCPEGYSGP 165
>3zyj_B Netrin-G1; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo
sapiens}
Length = 426
Score = 58.3 bits (140), Expect = 5e-09
Identities = 28/169 (16%), Positives = 43/169 (25%), Gaps = 33/169 (19%)
Query: 165 GHYGPDCKLACQCENGAGC---DPNTGACDCLDGYMGTHCEEVCGPGRFGQNCSQECQCR 221
+ C+C A D + C+C G C + C G+
Sbjct: 287 AISDIKVRGRCKCNLHATVCVYDNSKLTCECEHNTTGPDCGK-CKKNYQGRPW-SPGSYL 344
Query: 222 NGAECHPATGECSCQPGFTGSLCEERCPPGTHGPSCINRCRCQNGAICNPANGQCLCAPG 281
+ +C P + CQNG C+ N +CLC
Sbjct: 345 PIPKGAA----NACIPSISSIGTNV---------CDNELLHCQNGGTCHN-NVRCLCPAA 390
Query: 282 WMGSVCNVPCTPGMWGQGCTVPCECFNGASCHHVTGECQCEPGFKGQKC 330
+ G +C C SC +G+ G
Sbjct: 391 YTGILCE--------------KLRCEEAGSCGSDSGQGAPPHGTHHHHH 425
Score = 47.5 bits (112), Expect = 1e-05
Identities = 28/194 (14%), Positives = 43/194 (22%), Gaps = 36/194 (18%)
Query: 49 FRLMFPQCMDPCPEGTWGKQCVHYCSCPVESMECSRIDGNCSCPPGFRGAKCKERTCPDG 108
RL+ P + + + + S C C C+ C
Sbjct: 264 IRLLRPAVGEIFVDELHLARYFYAISDIKVRGRCKCNLHATVCVYDNSKLTCE---CEHN 320
Query: 109 LYGEGCDRTCECNVENTKLCVPVCTDE-CIRGTCIAPNTCKCEVGFGGPTCNIECPEGHY 167
G C + C G+ + C
Sbjct: 321 TTGPDCGK-----------CKKNYQGRPWSPGSYLPIPKGAAN------ACIPSISSIGT 363
Query: 168 GPDCKLACQCENGAGCDPNTGACDCLDGYMGTHCEEVCGPGRFGQNCSQECQCRNGAECH 227
C+NG C N C C Y G CE+ +C C
Sbjct: 364 NVCDNELLHCQNGGTCH-NNVRCLCPAAYTGILCEK--------------LRCEEAGSCG 408
Query: 228 PATGECSCQPGFTG 241
+G+ + G
Sbjct: 409 SDSGQGAPPHGTHH 422
Score = 43.7 bits (102), Expect = 2e-04
Identities = 26/178 (14%), Positives = 42/178 (23%), Gaps = 22/178 (12%)
Query: 478 RHCEKPCPQGSYGQDCSQTCLCSKEGSASCSPGSGQCVCRPGGAGQLCDRPCSEGRYGQN 537
R + + C VC + C+ C G +
Sbjct: 268 RPAVGEIFVDELHLARYFYAISDIKVRGRCKCNLHATVCVYDNSKLTCE--CEHNTTGPD 325
Query: 538 CTQECRCMNGAACNPQDGTCLCPAGYYGPLCQKRCEFMTYGRNCAQACTCFTENSQGCDI 597
C + + G +P G+ L C + + C +N C
Sbjct: 326 CGKCKKNYQGRPWSP--GSYLPIPKGAANACIPSISSIGTNVCDNELLHC--QNGGTC-H 380
Query: 598 VTGKCICRPGFKGHRCETQCSNPNTYGEDCSLDCGCNNGGTCNQLDGGCNCGRGYQGK 655
+C+C + G CE C G+C G G
Sbjct: 381 NNVRCLCPAAYTGILCEK---------------LRCEEAGSCGSDSGQGAPPHGTHHH 423
Score = 40.2 bits (93), Expect = 0.003
Identities = 29/166 (17%), Positives = 39/166 (23%), Gaps = 36/166 (21%)
Query: 213 NCSQECQCRNGAECHPA---TGECSCQPGFTGSLCEERCPPGTHGPSCINRCRCQNGAIC 269
C+C A C C+ TG C +C G
Sbjct: 292 KVRGRCKCNLHATVCVYDNSKLTCECEHNTTGPDCG-KCKKNYQGRPW------------ 338
Query: 270 NPANGQCLCAPGWMGSVCNVPCTPGMWGQGCTVPCECFNGASCHHVTGECQCEPGFKGQK 329
+ G L P + C + C NG +CH+ C C + G
Sbjct: 339 --SPGSYLPIPKGAANACIPSISSIGTNVCDNELLHCQNGGTCHN-NVRCLCPAAYTGIL 395
Query: 330 CMDPCPEGTWGKQCVHYCSC-PVESMECSRIDGNCSCPPGFRGAKC 374
C C S C G + P G
Sbjct: 396 C--------------EKLRCEEAGS--CGSDSGQGAPPHGTHHHHH 425
Score = 39.8 bits (92), Expect = 0.003
Identities = 18/84 (21%), Positives = 24/84 (28%), Gaps = 16/84 (19%)
Query: 740 ERCPPGTHGPSCINRC-RCQNGAICNPANGQCLCAPGWMGSVCNVPCTPGMWGQGCTVPC 798
C N CQNG C+ N +CLC + G +C
Sbjct: 355 IPSISSIGTNVCDNELLHCQNGGTCHN-NVRCLCPAAYTGILCE--------------KL 399
Query: 799 ECFNGASCHHVTGECQCEPGFKGQ 822
C SC +G+ G
Sbjct: 400 RCEEAGSCGSDSGQGAPPHGTHHH 423
Score = 38.3 bits (88), Expect = 0.010
Identities = 30/130 (23%), Positives = 40/130 (30%), Gaps = 21/130 (16%)
Query: 484 CPQGSYGQDCSQTCLCSKEGSASCSPGSGQCVCRPGGAGQLCDRPCSEGRYGQNCTQECR 543
C + G DC + + G + P GA C S +
Sbjct: 317 CEHNTTGPDCGKCK----KNYQGRPWSPGSYLPIPKGAANACIPSISSIGTNVCDNELLH 372
Query: 544 CMNGAACNPQDGTCLCPAGYYGPLCQKRCEFMTYGRNCAQACTCFTENSQGCDIVTGKCI 603
C NG C+ + CLCPA Y G LC+K C S C +G+
Sbjct: 373 CQNGGTCH-NNVRCLCPAAYTGILCEK--------------LRCEEAGS--CGSDSGQGA 415
Query: 604 CRPGFKGHRC 613
G H
Sbjct: 416 PPHGTHHHHH 425
Score = 36.0 bits (82), Expect = 0.049
Identities = 20/105 (19%), Positives = 30/105 (28%), Gaps = 15/105 (14%)
Query: 474 GFSGRHCEKPCPQGSYGQDCSQTCLCSKEGSASCSPGSGQC------------VCRPGGA 521
+G C K C + G+ S A+ + C+ GG
Sbjct: 320 NTTGPDCGK-CKKNYQGRPWSPGSYLPIPKGAANACIPSISSIGTNVCDNELLHCQNGGT 378
Query: 522 GQLCDR-PCSEGRYGQNCTQECRCMNGAACNPQDGTCLCPAGYYG 565
R C G C ++ RC +C G P G +
Sbjct: 379 CHNNVRCLCPAAYTGILC-EKLRCEEAGSCGSDSGQGAPPHGTHH 422
Score = 34.4 bits (78), Expect = 0.16
Identities = 29/135 (21%), Positives = 38/135 (28%), Gaps = 24/135 (17%)
Query: 527 RPCSEGRYGQNCTQECRCMNGAAC---NPQDGTCLCPAGYYGPLCQKRCEFMTYGRNCAQ 583
C+C A + TC C GP C +C+ GR +
Sbjct: 282 ARYFYAISDIKVRGRCKCNLHATVCVYDNSKLTCECEHNTTGPDCG-KCKKNYQGRPWSP 340
Query: 584 ACTCFTENSQGCDIVTGKCICRPGFKGHRCETQCSNPNTYGEDCSLDCG-CNNGGTCNQL 642
P KG S + C + C NGGTC+
Sbjct: 341 GS------------------YLPIPKGAANACIPSISSIGTNVCDNELLHCQNGGTCHN- 381
Query: 643 DGGCNCGRGYQGKLC 657
+ C C Y G LC
Sbjct: 382 NVRCLCPAAYTGILC 396
Score = 30.6 bits (68), Expect = 2.0
Identities = 25/234 (10%), Positives = 43/234 (18%), Gaps = 25/234 (10%)
Query: 184 DPNTGACDCLDGYMGTHCEEVCGPGRFGQNCSQECQCRNGAECHPATGECSCQPGFTGSL 243
+ Q + + T
Sbjct: 214 YTTNSKIIHFEIKDRFAFFAGPRLRNMASLYGQLDTTKKLRDFFTVTDLRIRLLRPAVGE 273
Query: 244 CEERCPPGTHGPSCINRCRCQNGAICNPANGQCLCAPGWMGSVCNVPCTPGMWGQGCTVP 303
I+ + + CN C+ C G C
Sbjct: 274 IFVDELHLARYFYAISDIKVRGRCKCNLHATVCVYDNSK----LTCECEHNTTGPDCGKC 329
Query: 304 CECFNGASCHHVTGECQCEPGFKGQKCMDPCPEGTWGKQCVHYCSCPVESMECSRIDGNC 363
+ + G G P C P C + C + C
Sbjct: 330 KKNYQGRPWSP--GSYLPIPKGAANAC-IPSISSIGTNVCDNELLHCQNGGTCHN-NVRC 385
Query: 364 SCPPGFRGAKCKERTCPDGLYGEGCDRTCECNVENTKLCHAVTGKCECGPGWDG 417
CP + G C++ C + C + +G+ G
Sbjct: 386 LCPAAYTGILCEK---------------LRCEEAGS--CGSDSGQGAPPHGTHH 422
>4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD
finger, cell adhesion, innate immunity, extracellular MA
protein; HET: NGA NAG FUC; 2.60A {Homo sapiens}
Length = 143
Score = 50.5 bits (121), Expect = 2e-07
Identities = 37/134 (27%), Positives = 47/134 (35%), Gaps = 33/134 (24%)
Query: 177 CENGAGC----DPNTGACDCLDGYMGTHCEEV--CGPGRFGQNCSQECQ---CRNGAECH 227
CENG C + +C+C DG+ +C V + C C NG C
Sbjct: 8 CENGGICLPGLADGSFSCECPDGFTDPNCSSVVEVASDEEEPTSAGPCTPNPCHNGGTCE 67
Query: 228 PATG---------ECSCQPGFTGSLCEERCPPGTHGPSCINRCR---CQNGAICN--PAN 273
+ C C GF G C+ IN C C+NG IC AN
Sbjct: 68 ISEAYRGDTFIGYVCKCPRGFNGIHCQHN----------INECEVEPCKNGGICTDLVAN 117
Query: 274 GQCLCAPGWMGSVC 287
C C +MG C
Sbjct: 118 YSCECPGEFMGRNC 131
Score = 46.2 bits (110), Expect = 4e-06
Identities = 30/134 (22%), Positives = 38/134 (28%), Gaps = 33/134 (24%)
Query: 220 CRNGAECHPATGE----CSCQPGFTGSLCEERCPPGTHGPSCINRCR-----CQNGAICN 270
C NG C P + C C GFT C + + C NG C
Sbjct: 8 CENGGICLPGLADGSFSCECPDGFTDPNCSSVVEVASDEEEPTSAGPCTPNPCHNGGTCE 67
Query: 271 PANG---------QCLCAPGWMGSVCNV---PCTPGMWGQGCTVPCECFNGASCHHVTG- 317
+ C C G+ G C C C NG C +
Sbjct: 68 ISEAYRGDTFIGYVCKCPRGFNGIHCQHNINECEVEP----------CKNGGICTDLVAN 117
Query: 318 -ECQCEPGFKGQKC 330
C+C F G+ C
Sbjct: 118 YSCECPGEFMGRNC 131
Score = 45.5 bits (108), Expect = 7e-06
Identities = 34/142 (23%), Positives = 41/142 (28%), Gaps = 34/142 (23%)
Query: 544 CMNGAACNPQDG----TCLCPAGYYGPLCQKRCEFMTYGRNCAQAC-----------TCF 588
C NG C P +C CP G+ P C E + A TC
Sbjct: 8 CENGGICLPGLADGSFSCECPDGFTDPNCSSVVEVASDEEEPTSAGPCTPNPCHNGGTCE 67
Query: 589 TENSQGCDIVTG-KCICRPGFKGHRCETQ----CSNPNTYGEDCSLDCGCNNGGTCNQLD 643
+ D G C C GF G C+ P C NGG C L
Sbjct: 68 ISEAYRGDTFIGYVCKCPRGFNGIHCQHNINECEVEP------------CKNGGICTDLV 115
Query: 644 GG--CNCGRGYQGKLCTAPCPE 663
C C + G+ C
Sbjct: 116 ANYSCECPGEFMGRNCQYKGGG 137
Score = 33.2 bits (76), Expect = 0.12
Identities = 20/84 (23%), Positives = 26/84 (30%), Gaps = 18/84 (21%)
Query: 757 CQNGAICNPANG----QCLCAPGWMGSVCNVPCTPGMWGQGCTVPCE-----CFNGASCH 807
C+NG IC P C C G+ C+ + T C NG +C
Sbjct: 8 CENGGICLPGLADGSFSCECPDGFTDPNCSSVVEVASDEEEPTSAGPCTPNPCHNGGTCE 67
Query: 808 HVTG---------ECQCEPGFKGQ 822
C+C GF G
Sbjct: 68 ISEAYRGDTFIGYVCKCPRGFNGI 91
Score = 29.7 bits (67), Expect = 2.0
Identities = 19/86 (22%), Positives = 25/86 (29%), Gaps = 17/86 (19%)
Query: 306 CFNGASCHHVTGE----CQCEPGFKGQKCMDPCPEGTWGKQCVHYCSC------------ 349
C NG C + C+C GF C + ++ C
Sbjct: 8 CENGGICLPGLADGSFSCECPDGFTDPNCSSVVEVASDEEEPTSAGPCTPNPCHNGGTCE 67
Query: 350 PVESMECSRIDG-NCSCPPGFRGAKC 374
E+ G C CP GF G C
Sbjct: 68 ISEAYRGDTFIGYVCKCPRGFNGIHC 93
Score = 28.9 bits (65), Expect = 3.3
Identities = 20/49 (40%), Positives = 24/49 (48%), Gaps = 8/49 (16%)
Query: 741 RCPPGTHGPSC---INRCR---CQNGAICN--PANGQCLCAPGWMGSVC 781
+CP G +G C IN C C+NG IC AN C C +MG C
Sbjct: 83 KCPRGFNGIHCQHNINECEVEPCKNGGICTDLVANYSCECPGEFMGRNC 131
Score = 27.8 bits (62), Expect = 7.4
Identities = 18/80 (22%), Positives = 23/80 (28%), Gaps = 24/80 (30%)
Query: 757 CQNGAICNPANG---------QCLCAPGWMGSVCNV---PCTPGMWGQGCTVPCECFNGA 804
C NG C + C C G+ G C C C NG
Sbjct: 60 CHNGGTCEISEAYRGDTFIGYVCKCPRGFNGIHCQHNINECEVEP----------CKNGG 109
Query: 805 SCHHVTG--ECQCEPGFKGQ 822
C + C+C F G+
Sbjct: 110 ICTDLVANYSCECPGEFMGR 129
>2dtg_E Insulin receptor; IR ectodomain, X-RAY crystallography, hormone
receptor/immune system complex; 3.80A {Homo sapiens}
SCOP: b.1.2.1 b.1.2.1 b.1.2.1 c.10.2.5 c.10.2.5 g.3.9.1
PDB: 3loh_E
Length = 897
Score = 53.4 bits (127), Expect = 2e-07
Identities = 42/226 (18%), Positives = 61/226 (26%), Gaps = 56/226 (24%)
Query: 156 PTCNIECPEGHYGPDCKLACQCENGAGCDPNTGACDCLDGYMGTHCEEVCGPGRFGQNCS 215
C CP K C C +HC++VC C+
Sbjct: 153 EECGDICP-----GTAKGKTNCPATVINGQFVERCWTH-----SHCQKVCPTICKSHGCT 202
Query: 216 QECQCRNGAECHPA-TGECS----------CQPGFTGSLCEERCPPGT---HGPSCINRC 261
E C CH G CS C+ + C E CPP C+N
Sbjct: 203 AEGLC-----CHSECLGNCSQPDDPTKCVACRNFYLDGRCVETCPPPYYHFQDWRCVNFS 257
Query: 262 RCQNG-AICNPANGQCLCAPGWMGSVCNVPCTPGMWGQGCTVPCECFNGASCHHVTGECQ 320
CQ+ C + Q + C C G + C
Sbjct: 258 FCQDLHHKCKNSRRQGCHQYVIHNNKCIPECPSGYTMNSSNLLC---------------- 301
Query: 321 CEPGFKGQKCMDPCPEGTWGK---QCVHYCSCPVESMECSRIDGNC 363
C+ PCP+ + + + E C+ I+G+
Sbjct: 302 -------TPCLGPCPKVCHLLEGEKTIDSVTSAQELRGCTVINGSL 340
Score = 40.3 bits (93), Expect = 0.003
Identities = 35/192 (18%), Positives = 49/192 (25%), Gaps = 26/192 (13%)
Query: 475 FSGRHCEKPCPQGSYGQDCSQTCLCSKEGSASC-SPGSGQCVCRPGGAGQLCDRPCSEGR 533
C CP + G+ + + + C + Q VC C
Sbjct: 150 DDNEECGDICPGTAKGKTNCPATVINGQFVERCWTHSHCQKVCPTICKSHGCTAEG---- 205
Query: 534 YGQNCTQECRCMNGAACNPQDGT-CL-CPAGYYGPLCQKRCEFMTYGRNCAQACTCFTEN 591
C EC G P D T C+ C Y C + C Y C F+
Sbjct: 206 --LCCHSEC---LGNCSQPDDPTKCVACRNFYLDGRCVETCPPPYY-HFQDWRCVNFSFC 259
Query: 592 SQGCDIVTGKCICRPGFKGHRCETQCSNPNTYGEDCSLDCGCNNGGTCNQLDGGCNCGRG 651
C + C +C +G T N + C G
Sbjct: 260 QDLHHKCKNSRRQ-----------GCHQYVIHNNKCIPEC--PSGYTMNSSNLLCTPCLG 306
Query: 652 YQGKLCTAPCPE 663
K+C E
Sbjct: 307 PCPKVCHLLEGE 318
Score = 38.7 bits (89), Expect = 0.008
Identities = 28/135 (20%), Positives = 39/135 (28%), Gaps = 9/135 (6%)
Query: 479 HCEKPCPQGSYGQDCSQTCL-CSKEGSASCS--PGSGQCV-CRPGGAGQLCDRPCSEGRY 534
HC+K CP C+ L C E +CS +CV CR C C Y
Sbjct: 187 HCQKVCPTICKSHGCTAEGLCCHSECLGNCSQPDDPTKCVACRNFYLDGRCVETCPPPYY 246
Query: 535 ---GQNCTQECRCMNG-AACNPQDGTCLCPAGYYGPLCQKRCEFMTYGRNCAQACT-CFT 589
C C + C + C C + CT C
Sbjct: 247 HFQDWRCVNFSFCQDLHHKCKNSRRQGCHQYVIHNNKCIPECPSGYTMNSSNLLCTPCLG 306
Query: 590 ENSQGCDIVTGKCIC 604
+ C ++ G+
Sbjct: 307 PCPKVCHLLEGEKTI 321
Score = 38.4 bits (88), Expect = 0.011
Identities = 34/158 (21%), Positives = 49/158 (31%), Gaps = 13/158 (8%)
Query: 3 CVPVCTDECIRGTCIAPNTCKCEVGFGGPTCNIAKDAKTKPTDTYTFRLMF--PQCMDPC 60
C VC C C A C G C+ D PT R + +C++ C
Sbjct: 188 CQKVCPTICKSHGCTAEGLCCHSECLGN--CSQPDD----PTKCVACRNFYLDGRCVETC 241
Query: 61 PEGTW---GKQCVHYCSCPVESMECSRIDGNCSCPPGFRGAKCKERTCPDGLYGEGCDRT 117
P + +CV++ C +C KC CP G +
Sbjct: 242 PPPYYHFQDWRCVNFSFCQDLHHKCKNSRRQGCHQYVIHNNKC-IPECPSGYTMNSSNLL 300
Query: 118 CE-CNVENTKLCVPVCTDECIRGTCIAPNTCKCEVGFG 154
C C K+C + ++ I A C V G
Sbjct: 301 CTPCLGPCPKVCHLLEGEKTIDSVTSAQELRGCTVING 338
Score = 34.9 bits (79), Expect = 0.13
Identities = 31/221 (14%), Positives = 44/221 (19%), Gaps = 37/221 (16%)
Query: 385 GEGCDRTCECNVENTKLCHAVTGKCECGPGWDGLTCDRPCPITRWGDNCSQHCNCKN--- 441
G+ C T + C W C + CP C+ C +
Sbjct: 156 GDICPGTAKGKTNCPATVINGQFVERC---WTHSHCQKVCPTICKSHGCTAEGLCCHSEC 212
Query: 442 DALCF-PRNGTNTY--QYFFLQSLTLFTFLSLTHSGFSGRHCEKPCPQGSYGQDCSQTCL 498
C P + T + F+L C + CP Y C+
Sbjct: 213 LGNCSQPDDPTKCVACRNFYL-----------------DGRCVETCPPPYY-HFQDWRCV 254
Query: 499 CSKEGSASCSPGSGQCVCRPGGA---GQLCDRPCSEGRYGQNCTQECRCMNGAACNPQDG 555
C C G + C C
Sbjct: 255 NFSFCQDLHHKCKNSRRQGCHQYVIHNNKCIPECPSGYTMNSSNLLCTP-----CLGPCP 309
Query: 556 TCLCPAGYYGPLCQKRCEFMTYGRNCAQACTCFTENSQGCD 596
C G R C N +G +
Sbjct: 310 KV-CH-LLEGEKTIDSVTSAQELRGCTVINGSLIINIRGGN 348
Score = 34.5 bits (78), Expect = 0.19
Identities = 30/217 (13%), Positives = 58/217 (26%), Gaps = 22/217 (10%)
Query: 212 QNCSQECQCRNGAECHPATGECSCQPGF---TGSLCEERCPPGTHGPSCINRCRCQN--- 265
+ C C + + + Q T S C++ CP C C +
Sbjct: 153 EECGDICPGTAKGKTNCPATVINGQFVERCWTHSHCQKVCPTICKSHGCTAEGLCCHSEC 212
Query: 266 -GAICNPAN-GQCL-CAPGWMGSVCNVPCTPGMWGQGCTVPCECFNGASCHHVTGECQCE 322
G P + +C+ C ++ C C P + F C + +
Sbjct: 213 LGNCSQPDDPTKCVACRNFYLDGRCVETCPPPYYH---------FQDWRCVNFSFCQDLH 263
Query: 323 PGFKGQKCMDPCPEGTWGKQCVHYCS----CPVESMECSRIDGNCSCPPGFRGAKCKERT 378
K + +C+ C ++ C+ G C + +
Sbjct: 264 HKCKNSRRQGCHQYVIHNNKCIPECPSGYTMNSSNLLCTPCLGPCPKVCHLLEGEKTIDS 323
Query: 379 CPDGLYGEGCDRTCECNVENTKLCHAVTGKCECGPGW 415
GC + N + + + + E G
Sbjct: 324 VTSAQELRGCTVINGSLIINIRGGNNLAAELEANLGL 360
Score = 33.0 bits (74), Expect = 0.46
Identities = 16/83 (19%), Positives = 22/83 (26%), Gaps = 4/83 (4%)
Query: 738 CEERCPPGT---HGPSCINRCRCQNG-AICNPANGQCLCAPGWMGSVCNVPCTPGMWGQG 793
C E CPP C+N CQ+ C + Q + C C G
Sbjct: 237 CVETCPPPYYHFQDWRCVNFSFCQDLHHKCKNSRRQGCHQYVIHNNKCIPECPSGYTMNS 296
Query: 794 CTVPCECFNGASCHHVTGECQCE 816
+ C G +
Sbjct: 297 SNLLCTPCLGPCPKVCHLLEGEK 319
Score = 31.0 bits (69), Expect = 1.9
Identities = 35/205 (17%), Positives = 50/205 (24%), Gaps = 34/205 (16%)
Query: 5 PVCTDECIRGTCIAPNTCKCEVGFGGPTCNIAKDAKTKPTDTYTFRLMFPQCMDPCPEGT 64
C D C P T K + C +T C C
Sbjct: 153 EECGDIC-------PGTAKGK-----TNCPATVINGQFVERCWTHSHCQKVCPTICKSHG 200
Query: 65 WGK-------QCVHYCSCPVESMECS-----RIDGNC--SCPPGF----RGAKCKERTCP 106
+C+ CS P + +C +DG C +CPP + C
Sbjct: 201 CTAEGLCCHSECLGNCSQPDDPTKCVACRNFYLDGRCVETCPPPYYHFQDWRCVNFSFCQ 260
Query: 107 DGLYGEGCDRTCECNVENTKLCVPVCTDECIRGTCIAPNTCKCEVGFGGPTCNIECPEGH 166
D C + + C EC G + + C G C C
Sbjct: 261 DL--HHKCKNSRRQGCHQYVIHNNKCIPECPSGYTMNSSNLLCTPCLG--PCPKVCHLLE 316
Query: 167 YGPDCKLACQCENGAGCDPNTGACD 191
+ GC G+
Sbjct: 317 GEKTIDSVTSAQELRGCTVINGSLI 341
Score = 29.1 bits (64), Expect = 7.0
Identities = 18/97 (18%), Positives = 27/97 (27%), Gaps = 15/97 (15%)
Query: 711 FNTTLYLYLFVNLTYGILYKTLVRLRECEERCPPGTHGPSCINRCRCQNGAICNPANGQC 770
T + + ++ + EC + CP + + C I +C
Sbjct: 128 LATIDWSRILDSVEDNHIVLNKDDNEECGDICPG-----TAKGKTNCPATVINGQFVERC 182
Query: 771 LCAPGWMGSVCNVPCTPGMWGQGCTVPCECFNGASCH 807
W S C C GCT C CH
Sbjct: 183 -----WTHSHCQKVCPTICKSHGCTAEGLC-----CH 209
>1klo_A Laminin; glycoprotein; 2.10A {Mus musculus} SCOP: g.3.11.2 g.3.11.2
g.3.11.2 PDB: 1npe_B 1tle_A
Length = 162
Score = 49.0 bits (117), Expect = 7e-07
Identities = 43/164 (26%), Positives = 50/164 (30%), Gaps = 36/164 (21%)
Query: 175 CQCENGAGCDPNTGA-----CDCLDGYMGTHCEEVCGPGRFGQ--------------NCS 215
C C G+ C C G G CE C G FG C+
Sbjct: 1 CPCPGGSSCAIVPKTKEVVCTHCPTGTAGKRCEL-CDDGYFGDPLGSNGPVRLCRPCQCN 59
Query: 216 QECQCRNGAECHPATGEC-SCQPGFTGSLCEERCPPGTHGP-------------SCINRC 261
C+ TGEC C G C+ RC G G +C
Sbjct: 60 DNIDPNAVGNCNRLTGECLKCIYNTAGFYCD-RCKEGFFGNPLAPNPADKCKACACNPYG 118
Query: 262 RCQNGAICNPANGQCLCAPGWMGSVCNVPCTPGMWGQGCTVPCE 305
Q + CNP GQC C P G C C PG + CE
Sbjct: 119 TVQQQSSCNPVTGQCQCLPHVSGRDCGT-CDPGYYNLQSGQGCE 161
Score = 46.3 bits (110), Expect = 6e-06
Identities = 41/163 (25%), Positives = 51/163 (31%), Gaps = 36/163 (22%)
Query: 218 CQCRNGAECHPATGE-----CSCQPGFTGSLCEERCPPGTHGPS--------------CI 258
C C G+ C C G G CE C G G C
Sbjct: 1 CPCPGGSSCAIVPKTKEVVCTHCPTGTAGKRCE-LCDDGYFGDPLGSNGPVRLCRPCQCN 59
Query: 259 NRCRCQNGAICNPANGQCL-CAPGWMGSVCNVPCTPGMWGQGCT-------VPCECF--- 307
+ CN G+CL C G C+ C G +G C C
Sbjct: 60 DNIDPNAVGNCNRLTGECLKCIYNTAGFYCDR-CKEGFFGNPLAPNPADKCKACACNPYG 118
Query: 308 ---NGASCHHVTGECQCEPGFKGQKCMDPCPEGTWGKQCVHYC 347
+SC+ VTG+CQC P G+ C C G + Q C
Sbjct: 119 TVQQQSSCNPVTGQCQCLPHVSGRDC-GTCDPGYYNLQSGQGC 160
Score = 37.9 bits (88), Expect = 0.004
Identities = 38/163 (23%), Positives = 51/163 (31%), Gaps = 31/163 (19%)
Query: 497 CLCSKEGSASCSPGSGQCV---CRPGGAGQLCDRPCSEGRYGQ--------------NCT 539
C C S + P + + V C G AG+ C+ C +G +G C
Sbjct: 1 CPCPGGSSCAIVPKTKEVVCTHCPTGTAGKRCEL-CDDGYFGDPLGSNGPVRLCRPCQCN 59
Query: 540 QECRCMNGAACNPQDGTCL-CPAGYYGPLCQK------RCEFMTYGRNCAQACTCFTENS 592
CN G CL C G C + + +AC C +
Sbjct: 60 DNIDPNAVGNCNRLTGECLKCIYNTAGFYCDRCKEGFFGNPLAPNPADKCKACACNPYGT 119
Query: 593 QG----CDIVTGKCICRPGFKGHRCETQCSNPNTYGEDCSLDC 631
C+ VTG+C C P G C C P Y C
Sbjct: 120 VQQQSSCNPVTGQCQCLPHVSGRDCG-TCD-PGYYNLQSGQGC 160
Score = 36.7 bits (85), Expect = 0.010
Identities = 42/164 (25%), Positives = 58/164 (35%), Gaps = 34/164 (20%)
Query: 304 CECFNGASCHHVTGE-----CQCEPGFKGQKCMDPCPEGTWGKQCVHY--------CSC- 349
C C G+SC V C G G++C + C +G +G C C
Sbjct: 1 CPCPGGSSCAIVPKTKEVVCTHCPTGTAGKRC-ELCDDGYFGDPLGSNGPVRLCRPCQCN 59
Query: 350 ----PVESMECSRIDGNC-SCPPGFRGAKCKERTCPDGLYG-------EGCDRTCECN-- 395
P C+R+ G C C G C C +G +G + C CN
Sbjct: 60 DNIDPNAVGNCNRLTGECLKCIYNTAGFYCDR--CKEGFFGNPLAPNPADKCKACACNPY 117
Query: 396 --VENTKLCHAVTGKCECGPGWDGLTCDRPCPITRWGDNCSQHC 437
V+ C+ VTG+C+C P G C C + Q C
Sbjct: 118 GTVQQQSSCNPVTGQCQCLPHVSGRDCGT-CDPGYYNLQSGQGC 160
Score = 35.9 bits (83), Expect = 0.016
Identities = 37/145 (25%), Positives = 50/145 (34%), Gaps = 18/145 (12%)
Query: 89 CSCPPGFRGAKCKERTCPDGLYGEGCDRTCECNVENTKLCVPVCTDECIRGTCIAPNTC- 147
CP G G +C+ C DG +G+ + C + C
Sbjct: 21 THCPTGTAGKRCEL--CDDGYFGDPLGSNGPVRLCRPCQCNDNIDPNAVGNCNRLTGECL 78
Query: 148 KCEVGFGGPTCNIECPEGHYG-------PDCKLACQC------ENGAGCDPNTGACDCLD 194
KC G C+ C EG +G D AC C + + C+P TG C CL
Sbjct: 79 KCIYNTAGFYCD-RCKEGFFGNPLAPNPADKCKACACNPYGTVQQQSSCNPVTGQCQCLP 137
Query: 195 GYMGTHCEEVCGPGRFGQNCSQECQ 219
G C C PG + Q C+
Sbjct: 138 HVSGRDCGT-CDPGYYNLQSGQGCE 161
Score = 34.8 bits (80), Expect = 0.048
Identities = 34/139 (24%), Positives = 47/139 (33%), Gaps = 29/139 (20%)
Query: 474 GFSGRHCEKPCPQGSYG------------QDCSQTCLCSKEGSASCSPGSGQCV-CRPGG 520
G +G+ CE C G +G + C +C+ +G+C+ C
Sbjct: 26 GTAGKRCEL-CDDGYFGDPLGSNGPVRLCRPCQCNDNIDPNAVGNCNRLTGECLKCIYNT 84
Query: 521 AGQLCDRPCSEGRYGQ-------------NCTQECRCMNGAACNPQDGTCLCPAGYYGPL 567
AG CDR C EG +G C ++CNP G C C G
Sbjct: 85 AGFYCDR-CKEGFFGNPLAPNPADKCKACACNPYGTVQQQSSCNPVTGQCQCLPHVSGRD 143
Query: 568 CQKRCEFMTYGRNCAQACT 586
C C+ Y Q C
Sbjct: 144 CG-TCDPGYYNLQSGQGCE 161
Score = 32.5 bits (74), Expect = 0.28
Identities = 31/161 (19%), Positives = 45/161 (27%), Gaps = 29/161 (18%)
Query: 542 CRCMNGAACNPQDGT-----CLCPAGYYGPLCQK-------RCEFMTYGRNCAQACTCF- 588
C C G++C T CP G G C+ + C C
Sbjct: 1 CPCPGGSSCAIVPKTKEVVCTHCPTGTAGKRCELCDDGYFGDPLGSNGPVRLCRPCQCND 60
Query: 589 ---TENSQGCDIVTGKCI-CRPGFKGHRCE-----------TQCSNPNTYGEDCSLDCGC 633
C+ +TG+C+ C G C+ C+
Sbjct: 61 NIDPNAVGNCNRLTGECLKCIYNTAGFYCDRCKEGFFGNPLAPNPADKCKACACNPYGTV 120
Query: 634 NNGGTCNQLDGGCNCGRGYQGKLCTAPCPEGQYGYNCKEEC 674
+CN + G C C G+ C C G Y + C
Sbjct: 121 QQQSSCNPVTGQCQCLPHVSGRDCGT-CDPGYYNLQSGQGC 160
Score = 30.5 bits (69), Expect = 1.3
Identities = 24/87 (27%), Positives = 32/87 (36%), Gaps = 15/87 (17%)
Query: 751 CINRCRCQNGAICNPANGQCL-CAPGWMGSVCNVPCTPGMWGQGCT-------VPCECF- 801
C + CN G+CL C G C+ C G +G C C
Sbjct: 58 CNDNIDPNAVGNCNRLTGECLKCIYNTAGFYCDR-CKEGFFGNPLAPNPADKCKACACNP 116
Query: 802 -----NGASCHHVTGECQCEPGFKGQK 823
+SC+ VTG+CQC P G+
Sbjct: 117 YGTVQQQSSCNPVTGQCQCLPHVSGRD 143
Score = 30.2 bits (68), Expect = 1.5
Identities = 36/179 (20%), Positives = 57/179 (31%), Gaps = 47/179 (26%)
Query: 392 CECNVENTKLCHAVTGK---CECGPGWDGLTCDRPCPITRWGD--------------NCS 434
C C ++ T + C G G C+ C +GD C+
Sbjct: 1 CPCPGGSSCAIVPKTKEVVCTHCPTGTAGKRCEL-CDDGYFGDPLGSNGPVRLCRPCQCN 59
Query: 435 QHCNCKNDALCFPRNGTNTYQYFFLQSLTLFTFLSLTHSGFSGRHCEKPCPQGSYG---- 490
+ + C G +G +C++ C +G +G
Sbjct: 60 DNIDPNAVGNCNRLTGECL----------------KCIYNTAGFYCDR-CKEGFFGNPLA 102
Query: 491 ---QDCSQTCLCSKEGSAS----CSPGSGQCVCRPGGAGQLCDRPCSEGRYGQNCTQEC 542
D + C C+ G+ C+P +GQC C P +G+ C C G Y Q C
Sbjct: 103 PNPADKCKACACNPYGTVQQQSSCNPVTGQCQCLPHVSGRDCGT-CDPGYYNLQSGQGC 160
Score = 28.2 bits (63), Expect = 7.0
Identities = 17/50 (34%), Positives = 20/50 (40%), Gaps = 1/50 (2%)
Query: 750 SCINRCRCQNGAICNPANGQCLCAPGWMGSVCNVPCTPGMWGQGCTVPCE 799
+C Q + CNP GQC C P G C C PG + CE
Sbjct: 113 ACNPYGTVQQQSSCNPVTGQCQCLPHVSGRDCGT-CDPGYYNLQSGQGCE 161
>2vj3_A Neurogenic locus notch homolog protein 1; transcription,
metal-binding, transmembrane, developmental protein,
notch signaling pathway; 2.60A {Homo sapiens} SCOP:
g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A
2rr2_A*
Length = 135
Score = 47.2 bits (113), Expect = 2e-06
Identities = 36/123 (29%), Positives = 45/123 (36%), Gaps = 32/123 (26%)
Query: 220 CRNGAECHPATG--ECSCQPGFTGSLCEERCPPGTHGPSCINRCR---CQNGAICNPANG 274
C + +C G EC C G+TG CE +N C CQN A C G
Sbjct: 15 CEHAGKCINTLGSFECQCLQGYTGPRCEID----------VNECVSNPCQNDATCLDQIG 64
Query: 275 --QCLCAPGWMGSVCNV---PCTPGMWGQGCTVPCECFNGASCHHVTG--ECQCEPGFKG 327
QC+C PG+ G C V C C + C +C+C GF G
Sbjct: 65 EFQCICMPGYEGVHCEVNTDECASSP----------CLHNGRCLDKINEFQCECPTGFTG 114
Query: 328 QKC 330
C
Sbjct: 115 HLC 117
Score = 42.2 bits (100), Expect = 1e-04
Identities = 33/108 (30%), Positives = 42/108 (38%), Gaps = 24/108 (22%)
Query: 146 TCKCEVGFGGPTCNIECPEGHYGPDCKLACQCENGAGC--DPNTGACDCLDGYMGTHCEE 203
C+C G+ GP C I+ E P C+N A C C C+ GY G HCE
Sbjct: 29 ECQCLQGYTGPRCEIDVNECVSNP-------CQNDATCLDQIGEFQCICMPGYEGVHCEV 81
Query: 204 VCGPGRFGQNCSQECQ---CRNGAECHPATG--ECSCQPGFTGSLCEE 246
+ EC C + C +C C GFTG LC+
Sbjct: 82 N----------TDECASSPCLHNGRCLDKINEFQCECPTGFTGHLCQV 119
Score = 34.9 bits (81), Expect = 0.028
Identities = 29/94 (30%), Positives = 35/94 (37%), Gaps = 23/94 (24%)
Query: 742 CPPGTHGPSC---INRCR---CQNGAICNPANG--QCLCAPGWMGSVCNV---PCTPGMW 790
C G GP C +N C CQN A C G QC+C PG+ G C V C
Sbjct: 32 CLQGYTGPRCEIDVNECVSNPCQNDATCLDQIGEFQCICMPGYEGVHCEVNTDECASSP- 90
Query: 791 GQGCTVPCECFNGASCHHVTG--ECQCEPGFKGQ 822
C + C +C+C GF G
Sbjct: 91 ---------CLHNGRCLDKINEFQCECPTGFTGH 115
Score = 34.1 bits (79), Expect = 0.050
Identities = 21/63 (33%), Positives = 24/63 (38%), Gaps = 18/63 (28%)
Query: 601 KCICRPGFKGHRCETQ----CSNPNTYGEDCSLDCGCNNGGTCNQLDGG--CNCGRGYQG 654
+C C G+ G RCE SNP C N TC G C C GY+G
Sbjct: 29 ECQCLQGYTGPRCEIDVNECVSNP------------CQNDATCLDQIGEFQCICMPGYEG 76
Query: 655 KLC 657
C
Sbjct: 77 VHC 79
Score = 30.6 bits (70), Expect = 0.76
Identities = 19/73 (26%), Positives = 28/73 (38%), Gaps = 17/73 (23%)
Query: 757 CQNGAICNPANG--QCLCAPGWMGSVCNV---PCTPGMWGQGCTVPCECFNGASCHHVTG 811
C++ C G +C C G+ G C + C C N A+C G
Sbjct: 15 CEHAGKCINTLGSFECQCLQGYTGPRCEIDVNECVSNP----------CQNDATCLDQIG 64
Query: 812 --ECQCEPGFKGQ 822
+C C PG++G
Sbjct: 65 EFQCICMPGYEGV 77
Score = 29.1 bits (66), Expect = 2.5
Identities = 16/73 (21%), Positives = 21/73 (28%), Gaps = 19/73 (26%)
Query: 742 CPPGTHGPSC---INRCR---CQNGAICNPANG--QCLCAPGWMGSVCNV---PCTPGMW 790
C PG G C + C C + C QC C G+ G +C V
Sbjct: 70 CMPGYEGVHCEVNTDECASSPCLHNGRCLDKINEFQCECPTGFTGHLCQVDLHHILDA-- 127
Query: 791 GQGCTVPCECFNG 803
+N
Sbjct: 128 ------QKMVWNH 134
Score = 28.3 bits (64), Expect = 4.3
Identities = 20/75 (26%), Positives = 30/75 (40%), Gaps = 16/75 (21%)
Query: 306 CFNGASCHHVTG--ECQCEPGFKGQKC---MDPCPEGTWGKQCVHYCSCPVESMECSRID 360
C + C + G ECQC G+ G +C ++ C C + +C +I
Sbjct: 15 CEHAGKCINTLGSFECQCLQGYTGPRCEIDVNEC----VSNPCQNDATC------LDQIG 64
Query: 361 G-NCSCPPGFRGAKC 374
C C PG+ G C
Sbjct: 65 EFQCICMPGYEGVHC 79
Score = 28.3 bits (64), Expect = 5.1
Identities = 16/49 (32%), Positives = 21/49 (42%), Gaps = 8/49 (16%)
Query: 529 CSEGRYGQNCTQ---ECR---CMNGAACNPQDG--TCLCPAGYYGPLCQ 569
C G G +C EC C++ C + C CP G+ G LCQ
Sbjct: 70 CMPGYEGVHCEVNTDECASSPCLHNGRCLDKINEFQCECPTGFTGHLCQ 118
Score = 27.9 bits (63), Expect = 6.7
Identities = 26/127 (20%), Positives = 37/127 (29%), Gaps = 47/127 (37%)
Query: 88 NCSCPPGFRGAKCKERTCPDGLYGEGCDRTCECNVENTKLCVPVCTDECIR------GTC 141
C C G+ G CE +V +EC+ TC
Sbjct: 29 ECQCLQGYTG------------------PRCEIDV-----------NECVSNPCQNDATC 59
Query: 142 IAPN---TCKCEVGFGGPTCNIECPEGHYGPDCKLACQCENGAGC--DPNTGACDCLDGY 196
+ C C G+ G C + E P C + C N C+C G+
Sbjct: 60 LDQIGEFQCICMPGYEGVHCEVNTDECASSP-------CLHNGRCLDKINEFQCECPTGF 112
Query: 197 MGTHCEE 203
G C+
Sbjct: 113 TGHLCQV 119
>1igr_A Insulin-like growth factor receptor 1; hormone receptor, insulin
receptor family; HET: NAG FUC BMA MAN; 2.60A {Homo
sapiens} SCOP: c.10.2.5 c.10.2.5 g.3.9.1
Length = 478
Score = 48.3 bits (114), Expect = 8e-06
Identities = 29/208 (13%), Positives = 47/208 (22%), Gaps = 6/208 (2%)
Query: 109 LYGEGCDRTCECNVENTKLCVPVCTDECIRGTCIAPNTCKCEVGFGGPTCNIECPEGHYG 168
+ G + C T P+C I N C C +
Sbjct: 139 IVGNKPPKECGDLCPGTMEEKPMCEKTTINNEY---NYRCWTTNRCQKMCPSTCGKRACT 195
Query: 169 PDCKLACQ--CENGAGCDPNTGACDCLDGYMGTHCEEVCGPGRFGQNCSQECQCRNGAEC 226
+ + + + D +T C Y C C P + + A
Sbjct: 196 ENNECCHPECLGSCSAPDNDTACVACRHYYYAGVCVPACPPNTYRFEGWRCVDRDFCANI 255
Query: 227 HPATGECSCQPGFTGSLCEERCPPGTHGPSCINRCRCQNGAICNPANGQCLCAPGWMGSV 286
A S C + CP G + C P + + SV
Sbjct: 256 LSAESSDSEGFVIHDGECMQECPSGFI-RNGSQSMYCIPCEGPCPKVCEEEKKTKTIDSV 314
Query: 287 CNVPCTPGMWGQGCTVPCECFNGASCHH 314
+ G + G +
Sbjct: 315 TSAQMLQGCTIFKGNLLINIRRGNNIAS 342
Score = 45.2 bits (106), Expect = 8e-05
Identities = 25/184 (13%), Positives = 38/184 (20%), Gaps = 13/184 (7%)
Query: 69 CVHYCSCPVESMECSRIDGNCSCPPGFRGAKCKERTCPDGLYGEGCDRTCECNVENTKLC 128
E C + N ++ CP C EC C
Sbjct: 149 GDLCPGTMEEKPMCEKTTINNEYNYRCWTTNRCQKMCPSTCGKRACTENNEC-------C 201
Query: 129 VPVCTDECIRGTCIAPNTC-KCEVGFGGPTCNIECPEGHYGPDCKLACQCENGAGCDPNT 187
P C C C C + C CP Y + + A
Sbjct: 202 HPECLGSC--SAPDNDTACVACRHYYYAGVCVPACPPNTYRFEGWRCVDRDFCANILSAE 259
Query: 188 GACDCLDGYMGTHCEEVCGPGRF---GQNCSQECQCRNGAECHPATGECSCQPGFTGSLC 244
+ C + C G Q+ + + T +
Sbjct: 260 SSDSEGFVIHDGECMQECPSGFIRNGSQSMYCIPCEGPCPKVCEEEKKTKTIDSVTSAQM 319
Query: 245 EERC 248
+ C
Sbjct: 320 LQGC 323
Score = 39.4 bits (91), Expect = 0.005
Identities = 28/158 (17%), Positives = 40/158 (25%), Gaps = 8/158 (5%)
Query: 513 QCVCRPGGAGQLCDRPCSEGRYGQNCTQECRCMNGAACNPQDGTCLCPAGYYGPLCQKRC 572
+ + ++P E T E + M + C CQK C
Sbjct: 129 LILDAVSNNYIVGNKPPKECGDLCPGTMEEKPMCEKTTINNEYNYRCWTTNR---CQKMC 185
Query: 573 EFMTYGRNCAQACTCFTENS----QGCDIVTGKCICRPGFKGHRCETQCSNPNTYGEDCS 628
R C + C D T CR + C C PNTY +
Sbjct: 186 PSTCGKRACTENNECCHPECLGSCSAPDNDTACVACRHYYYAGVCVPACP-PNTYRFEGW 244
Query: 629 LDCGCNNGGTCNQLDGGCNCGRGYQGKLCTAPCPEGQY 666
+ + + G C CP G
Sbjct: 245 RCVDRDFCANILSAESSDSEGFVIHDGECMQECPSGFI 282
Score = 38.3 bits (88), Expect = 0.009
Identities = 13/145 (8%), Positives = 31/145 (21%), Gaps = 1/145 (0%)
Query: 478 RHCEKPCPQGSYGQDCSQTCLCSKEGSASCSPGSGQCVCRPGGAGQLCDRPCSEGRYGQN 537
+ C C + + ++ ++ + CR +C C Y
Sbjct: 183 KMCPSTCGKRACTENNECCHPECLGSCSAPDNDTACVACRHYYYAGVCVPACPPNTYRFE 242
Query: 538 CTQECRCMNGAACNPQDGTCLCPAGYYGPLCQKRCEFMTYG-RNCAQACTCFTENSQGCD 596
+ A + + + C + C + + C
Sbjct: 243 GWRCVDRDFCANILSAESSDSEGFVIHDGECMQECPSGFIRNGSQSMYCIPCEGPCPKVC 302
Query: 597 IVTGKCICRPGFKGHRCETQCSNPN 621
K + C+
Sbjct: 303 EEEKKTKTIDSVTSAQMLQGCTIFK 327
Score = 36.3 bits (83), Expect = 0.036
Identities = 19/160 (11%), Positives = 34/160 (21%), Gaps = 6/160 (3%)
Query: 212 QNCSQECQCRNGAECHPATGECSCQPGFTGSLCEERCPPGTHGPSCINRCRC------QN 265
+ +T + C++ CP +C C +
Sbjct: 149 GDLCPGTMEEKPMCEKTTINNEYNYRCWTTNRCQKMCPSTCGKRACTENNECCHPECLGS 208
Query: 266 GAICNPANGQCLCAPGWMGSVCNVPCTPGMWGQGCTVPCECFNGASCHHVTGECQCEPGF 325
+ + C + VC C P + + A+
Sbjct: 209 CSAPDNDTACVACRHYYYAGVCVPACPPNTYRFEGWRCVDRDFCANILSAESSDSEGFVI 268
Query: 326 KGQKCMDPCPEGTWGKQCVHYCSCPVESMECSRIDGNCSC 365
+CM CP G P E +
Sbjct: 269 HDGECMQECPSGFIRNGSQSMYCIPCEGPCPKVCEEEKKT 308
Score = 34.8 bits (79), Expect = 0.11
Identities = 22/198 (11%), Positives = 42/198 (21%), Gaps = 18/198 (9%)
Query: 334 CPEGTWGKQCVHYCSCPVESMECSRIDGNCSCPPGFRGAKCKERTCPDGLYGEGCDRTCE 393
P+ P+ + N C R K TC E +
Sbjct: 144 PPKECGDLCPGTMEEKPMCEKTTINNEYNYRCWTTNRCQKMCPSTCGKRACTENNECCHP 203
Query: 394 CNVENTKLCHAVTGKCECGPGWDGLTCDRPCPITRWGDNCSQHCNCKNDALCFPRNGTNT 453
+ + T C + C CP + + + A +++
Sbjct: 204 ECLGSCSAPDNDTACVACRHYYYAGVCVPACPPNTYRFEGWRCVDRDFCANILSAESSDS 263
Query: 454 YQYFFLQSLTLFTFLSLTHSGFSGRHCEKPCPQGSYG-QDCSQTCLCSKEGSASCSPGSG 512
+ C + CP G S C+ +
Sbjct: 264 EGFVIHDG-----------------ECMQECPSGFIRNGSQSMYCIPCEGPCPKVCEEEK 306
Query: 513 QCVCRPGGAGQLCDRPCS 530
+ + C+
Sbjct: 307 KTKTIDSVTSAQMLQGCT 324
Score = 29.8 bits (66), Expect = 4.6
Identities = 25/167 (14%), Positives = 39/167 (23%), Gaps = 19/167 (11%)
Query: 3 CVPVCTDECIRGTCIAPNTCKCEVGFGGPTCNIAKDAKTKPTDTYT--FRLMFPQCMDPC 60
C +C C + C N C P C + A T C+ C
Sbjct: 181 CQKMCPSTCGKRACTENNECCH------PECLGSCSAPDNDTACVACRHYYYAGVCVPAC 234
Query: 61 PEGTWGKQCVHYCSCPVESMECSRIDGNCSCPPGFRGAKCKERTCPDGLYGEGCDRTCEC 120
P T+ + C + + S +C + CP G
Sbjct: 235 PPNTYRFEGWR-CVDRDFCANILSAESSDSEGFVIHDGECM-QECPSGFI---------R 283
Query: 121 NVENTKLCVPVCTDECIRGTCIAPNTCKCEVGFGGPTCNIECPEGHY 167
N + C+P V +G+
Sbjct: 284 NGSQSMYCIPCEGPCPKVCEEEKKTKTIDSVTSAQMLQGCTIFKGNL 330
Score = 29.4 bits (65), Expect = 5.3
Identities = 26/229 (11%), Positives = 43/229 (18%), Gaps = 23/229 (10%)
Query: 7 CTDECIRGTCIAPNTCK--CEVGFGGPTCNIAKDAKTKPTDTYTFRLMFPQCMDPCPEGT 64
D + K ++ G + T + +C CP
Sbjct: 130 ILDAVSNNYIVGNKPPKECGDLCPGTMEEKPMCEKTTINNEYNYRCWTTNRCQKMCPSTC 189
Query: 65 WGKQCVHYC-----SCPVESMECSRIDGNCSCPPGFRGAKCKERTCPDGLYGEGCDRTCE 119
+ C C +C + C CP Y C
Sbjct: 190 GKRACTENNECCHPECLGSCSAPDNDTACVACRHYYYAGVCVP-ACPPNTY-RFEGWRCV 247
Query: 120 CNVENTKLCVPVCTDECIRGTCIAPNTCKCEVGFGGPTCNIECPEGHYGPDCKLACQCEN 179
+ + C ECP G + + C
Sbjct: 248 DRDFCANILSAES-------------SDSEGFVIHDGECMQECPSGFI-RNGSQSMYCIP 293
Query: 180 GAGCDPNTGACDCLDGYMGTHCEEVCGPGRFGQNCSQECQCRNGAECHP 228
G P + + + G + R G
Sbjct: 294 CEGPCPKVCEEEKKTKTIDSVTSAQMLQGCTIFKGNLLINIRRGNNIAS 342
>1zlg_A Anosmin 1; insulin-like growth factor receptor Cys-rich fold, WHEY
acidic protein fold, fibronectin type III fold, hormone-
growth factor complex; NMR {Homo sapiens}
Length = 680
Score = 48.0 bits (113), Expect = 9e-06
Identities = 20/124 (16%), Positives = 28/124 (22%), Gaps = 10/124 (8%)
Query: 183 CDPNTGACDCLDGYMGTHCEEVCGPGRFGQNCSQECQCRNGAECHPATGECSCQPGFTGS 242
+ C + + + QN C+N +C C
Sbjct: 17 SAGSVQRARCASRCLSLQITRISAFFQHFQNNGSLVWCQNHKQCSKCLEPCKESGDLRKH 76
Query: 243 LCEERCPPGTHGPSCINRCRCQNGAICNPANGQCLCAPGWMGSVCNVPCTPGMWGQGCTV 302
C+ C P P C C L G C P + C
Sbjct: 77 QCQSFCEPLF--PKKSYECLTS----CEFLKYILLVKQGD----CPAPEKASGFAAACVE 126
Query: 303 PCEC 306
CE
Sbjct: 127 SCEV 130
Score = 47.6 bits (112), Expect = 2e-05
Identities = 33/153 (21%), Positives = 45/153 (29%), Gaps = 15/153 (9%)
Query: 266 GAICNPANGQCLCAPGWMGSVCNVPCTPGMWGQGCTVPCECFNGASCHHVTGECQCEPGF 325
GA + L A + C C + + F C+
Sbjct: 5 GAAAARRLDESLSAGSVQRARCASRCLSLQITRISA-FFQHFQNNGS-----LVWCQNHK 58
Query: 326 KGQKCMDPCPEGT--WGKQCVHYCSC--PVESMECSRIDGNCSCPPGFRGAKCKERTCPD 381
+ KC++PC E QC +C P +S EC SC K+ CP
Sbjct: 59 QCSKCLEPCKESGDLRKHQCQSFCEPLFPKKSYEC-----LTSCEFLKYILLVKQGDCPA 113
Query: 382 GLYGEGCDRTCECNVENTKLCHAVTGKCECGPG 414
G C + E C V C G G
Sbjct: 114 PEKASGFAAACVESCEVDNECSGVKKCCSNGCG 146
Score = 44.6 bits (104), Expect = 1e-04
Identities = 26/161 (16%), Positives = 40/161 (24%), Gaps = 15/161 (9%)
Query: 223 GAECHPATGECSCQPGFTGSLCEERC---------PPGTHGPSCINRCRCQNGAICNPAN 273
GA E + C RC H + + CQN C+
Sbjct: 5 GAAAARRLDESLSAGSVQRARCASRCLSLQITRISAFFQHFQNNGSLVWCQNHKQCSKCL 64
Query: 274 GQCLCAPGWMGSVCNVPCTPGMWGQGCTVPCEC-FNGASCHHVTGEC--QCEPGFKGQKC 330
C + C C P + C F G+C + C
Sbjct: 65 EPCKESGDLRKHQCQSFCEPLFPKKSYECLTSCEFLKYILLVKQGDCPAPEKASGFAAAC 124
Query: 331 MDPC---PEGTWGKQCVHYCSCPVESMECSRIDGNCSCPPG 368
++ C E + K+C + + G P
Sbjct: 125 VESCEVDNECSGVKKCCSNGCGHTCQVPKTLYKGVPLKPRK 165
Score = 42.6 bits (99), Expect = 5e-04
Identities = 21/144 (14%), Positives = 36/144 (25%), Gaps = 9/144 (6%)
Query: 496 TCLCSKEGSASCSPGSGQCVCRPGGAGQLCDRPCSEGRYGQNCTQECRCMNGAACNPQDG 555
+ + + + C R + ++ QN C N C+
Sbjct: 6 AAAARRLDESLSAGSVQRARCASRCLSLQITRISAFFQHFQNNGSLVWCQNHKQCSKCLE 65
Query: 556 TCLCPAGYYGPLCQKRCEFMTYGRNCAQACTCFTENSQGCDIVTGKCICRPGFKGHRCET 615
C CQ CE + ++ +C + G C E
Sbjct: 66 PCKESGDLRKHQCQSFCEPLFPKKSYECLTSCEFLK-YILLVKQGDC--------PAPEK 116
Query: 616 QCSNPNTYGEDCSLDCGCNNGGTC 639
E C +D C+ C
Sbjct: 117 ASGFAAACVESCEVDNECSGVKKC 140
Score = 42.3 bits (98), Expect = 7e-04
Identities = 17/122 (13%), Positives = 25/122 (20%), Gaps = 10/122 (8%)
Query: 144 PNTCKCEVGFGGPTCNIECPEGHYGPDCKLACQCENGAGCDPNTGACDCLDGYMGTHCEE 203
+C + + C+N C C C+
Sbjct: 21 VQRARCASRCLSLQITRISAFFQHFQNNGSLVWCQNHKQCSKCLEPCKESGDLRKHQCQS 80
Query: 204 VCGPGRFGQNCSQECQCRNGAECHPATGECSCQPGFTGSLCEERCPPGTHGPSCINRCRC 263
C P S EC C + G C +C+ C
Sbjct: 81 FCEPL--FPKKSYECLT----SCEFLKYILLVKQG----DCPAPEKASGFAAACVESCEV 130
Query: 264 QN 265
N
Sbjct: 131 DN 132
Score = 38.8 bits (89), Expect = 0.008
Identities = 21/148 (14%), Positives = 33/148 (22%), Gaps = 34/148 (22%)
Query: 82 CSRIDGNCSCPPGFRGAKCKER--------TCPDGLYGEGCDRTCECNVENTKLCVPVCT 133
+R + A+C R + + C N K C C
Sbjct: 8 AARRLDESLSAGSVQRARCASRCLSLQITRISAFFQHFQNNGSLVWCQ--NHKQCSK-CL 64
Query: 134 DECIRGTCIAPNTCKCEVGFGGPTCNIECPEGHYGPDCKLACQCENG-AGCDPNTGACDC 192
+ C + + C+ P + EC CE G
Sbjct: 65 EPCKESGDLRKHQCQSFCEPLFPKKSYECL-----------TSCEFLKYILLVKQG---- 109
Query: 193 LDGYMGTHCEEVCGPGRFGQNCSQECQC 220
C F C + C+
Sbjct: 110 -------DCPAPEKASGFAAACVESCEV 130
Score = 38.4 bits (88), Expect = 0.011
Identities = 14/101 (13%), Positives = 29/101 (28%), Gaps = 10/101 (9%)
Query: 595 CDIVTGKCICRPGFKGHRCETQC--------SNPNTYGEDCSLDCGCNNGGTCNQLDGGC 646
+ + + RC ++C S + ++ C N C++ C
Sbjct: 8 AARRLDESLSAGSVQRARCASRCLSLQITRISAFFQHFQNNGSLVWCQNHKQCSKCLEPC 67
Query: 647 NCGRGYQGKLCTAPCPEG--QYGYNCKEECLTKGQDVPVRT 685
+ C + C + Y C C + V+
Sbjct: 68 KESGDLRKHQCQSFCEPLFPKKSYECLTSCEFLKYILLVKQ 108
Score = 38.0 bits (87), Expect = 0.013
Identities = 28/150 (18%), Positives = 44/150 (29%), Gaps = 18/150 (12%)
Query: 547 GAACNPQDGTCLCPAGYYGPLCQKRCEFMTYGRNCA-------QACTCFTENSQGCDIVT 599
GAA + L C RC + R A + +N + C
Sbjct: 5 GAAAARRLDESLSAGSVQRARCASRCLSLQITRISAFFQHFQNNGSLVWCQNHKQCSKCL 64
Query: 600 GKCICRPGFKGHRCETQCSNPNTYGEDCSLDCGCNNGGTCNQLDGGCNCGRGYQGKLCTA 659
C + H+C++ C S +C + C L +G C A
Sbjct: 65 EPCKESGDLRKHQCQSFCEP---LFPKKSYECLTS----CEFLKYILLVKQGD----CPA 113
Query: 660 PCPEGQYGYNCKEECLTKGQDVPVRTAVSH 689
P + C E C + V+ S+
Sbjct: 114 PEKASGFAAACVESCEVDNECSGVKKCCSN 143
Score = 38.0 bits (87), Expect = 0.015
Identities = 20/124 (16%), Positives = 29/124 (23%), Gaps = 10/124 (8%)
Query: 481 EKPCPQGSYGQDCSQTCLCSKEGSASCS-----PGSGQCVCRPGGAGQLCDRPCSEGRYG 535
E C+ CL + S C+ C PC E G
Sbjct: 14 ESLSAGSVQRARCASRCLSLQITRISAFFQHFQNNGSLVWCQNHKQCSKCLEPCKES--G 71
Query: 536 QNCTQECRCMNGAACNPQDGTCLCPAGYYGPLCQKR---CEFMTYGRNCAQACTCFTENS 592
+C+ + CL + + + C A AC E
Sbjct: 72 DLRKHQCQSFCEPLFPKKSYECLTSCEFLKYILLVKQGDCPAPEKASGFAAACVESCEVD 131
Query: 593 QGCD 596
C
Sbjct: 132 NECS 135
Score = 37.6 bits (86), Expect = 0.017
Identities = 13/77 (16%), Positives = 19/77 (24%), Gaps = 1/77 (1%)
Query: 738 CEERCPPGTHGPSCINRCRCQNGAICNPANGQCLCAPGWMGSVCNVPCTPGMWGQGCTVP 797
H + + CQN C+ C + C C P +
Sbjct: 35 ITRISAFFQHFQNNGSLVWCQNHKQCSKCLEPCKESGDLRKHQCQSFCEPLFPKKSYECL 94
Query: 798 CEC-FNGASCHHVTGEC 813
C F G+C
Sbjct: 95 TSCEFLKYILLVKQGDC 111
Score = 36.5 bits (83), Expect = 0.041
Identities = 15/98 (15%), Positives = 24/98 (24%), Gaps = 5/98 (5%)
Query: 479 HCEKPCPQGSYGQDCSQTCLCSKEGSASCSPGSGQCVCRPGGAGQLCDRPCSEGRYGQNC 538
+ + Q+ C + CS C C C ++
Sbjct: 34 QITRISAFFQHFQNNGSLVWC--QNHKQCSKCLEPCKESGDLRKHQCQSFCEPLFPKKSY 91
Query: 539 TQECRCMNG-AACNPQDGTCLCP--AGYYGPLCQKRCE 573
C + G C P A + C + CE
Sbjct: 92 ECLTSCEFLKYILLVKQGDCPAPEKASGFAAACVESCE 129
Score = 32.6 bits (73), Expect = 0.66
Identities = 24/184 (13%), Positives = 40/184 (21%), Gaps = 46/184 (25%)
Query: 356 CSRIDGNCSCPPGFRGAKCKER--------TCPDGLYGEGCDRTCECNVENTKLCHAVTG 407
+R + A+C R + + C N K C
Sbjct: 8 AARRLDESLSAGSVQRARCASRCLSLQITRISAFFQHFQNNGSLVWCQ--NHKQCSKCLE 65
Query: 408 KCECGPGWDGLTCDRPCPITRWGDNCSQHCNCKN-DALCFPRNGTNTYQYFFLQSLTLFT 466
C+ C C + +C+ + + G
Sbjct: 66 PCKESGDLRKHQCQSFCEPLFPKKSYECLTSCEFLKYILLVKQG---------------- 109
Query: 467 FLSLTHSGFSGRHCEKPCPQGSYGQDCSQTCLCSKEGSASCSPGSGQCVCRPGGAGQLCD 526
C P + C ++C E G +C G G C
Sbjct: 110 ------------DCPAPEKASGFAAACVESCEVDNE-----CSGVKKCCSN--GCGHTCQ 150
Query: 527 RPCS 530
P +
Sbjct: 151 VPKT 154
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane,
secreted, protease, PALM hydrolase, developmental
protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo
sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Length = 463
Score = 46.5 bits (110), Expect = 3e-05
Identities = 26/103 (25%), Positives = 36/103 (34%), Gaps = 19/103 (18%)
Query: 57 MDPCPEGTWGKQCVHYCSCPVESME-CSRIDGNCSCPPGFRGAKCKERTCPDGLYGEGCD 115
+ ++C CSR+ N C P + C G G+ C
Sbjct: 369 IVDPKRPLMPEECRATVQPAQTLTSECSRLCRNGYCTP------TGKCCCSPGWEGDFC- 421
Query: 116 RTCECNVENTKLCVPVCTDECIRGTCIAPNTCKCEVGFGGPTC 158
RT +C P C G C+ PN C C+ G+ GP C
Sbjct: 422 RTAKCE--------PACRHG---GVCVRPNKCLCKKGYLGPQC 453
Score = 42.3 bits (99), Expect = 5e-04
Identities = 25/89 (28%), Positives = 32/89 (35%), Gaps = 13/89 (14%)
Query: 117 TCECNVENTKLCVPVCTDECIRGTCIAPNTCKCEVGFGGPTCNIECPEGHYGPDCKLACQ 176
C V+ + C+ C G C C C G+ G C K
Sbjct: 380 ECRATVQPAQTLTSECSRLCRNGYCTPTGKCCCSPGWEGDFCRT----------AKCEPA 429
Query: 177 CENGAGC-DPNTGACDCLDGYMGTHCEEV 204
C +G C PN C C GY+G CE+V
Sbjct: 430 CRHGGVCVRPNK--CLCKKGYLGPQCEQV 456
Score = 41.9 bits (98), Expect = 6e-04
Identities = 23/78 (29%), Positives = 34/78 (43%), Gaps = 3/78 (3%)
Query: 493 CSQTCLCSKEGSASCSPGSGQCVCRPGGAGQLCDRPCSEGRYGQNCTQECRCMNGAACNP 552
C T ++ ++ CS C P G+ C P EG + + E C +G C
Sbjct: 381 CRATVQPAQTLTSECSRLCRNGYCTP--TGKCCCSPGWEGDFCRTAKCEPACRHGGVC-V 437
Query: 553 QDGTCLCPAGYYGPLCQK 570
+ CLC GY GP C++
Sbjct: 438 RPNKCLCKKGYLGPQCEQ 455
Score = 40.3 bits (94), Expect = 0.002
Identities = 24/70 (34%), Positives = 33/70 (47%), Gaps = 15/70 (21%)
Query: 219 QCRNGAECHPATGECSCQPGFTGSLCEE-RCPPGTHGPSCINRCRCQNGAICNPANGQCL 277
CRNG TG+C C PG+ G C +C P C++G +C N +CL
Sbjct: 398 LCRNGYCT--PTGKCCCSPGWEGDFCRTAKCEPA-----------CRHGGVCVRPN-KCL 443
Query: 278 CAPGWMGSVC 287
C G++G C
Sbjct: 444 CKKGYLGPQC 453
Score = 38.8 bits (90), Expect = 0.007
Identities = 23/73 (31%), Positives = 29/73 (39%), Gaps = 12/73 (16%)
Query: 586 TCFTENSQGCDIVTGKCICRPGFKGHRCETQCSNPNTYGEDCSLDCGCNNGGTCNQLDGG 645
C G TGKC C PG++G C T P C +GG C + +
Sbjct: 394 ECSRLCRNGYCTPTGKCCCSPGWEGDFCRTAKCEPA-----------CRHGGVCVRPN-K 441
Query: 646 CNCGRGYQGKLCT 658
C C +GY G C
Sbjct: 442 CLCKKGYLGPQCE 454
Score = 38.0 bits (88), Expect = 0.011
Identities = 25/83 (30%), Positives = 32/83 (38%), Gaps = 17/83 (20%)
Query: 249 PPGTHGPSCINRCRCQNGAICNPANGQCLCAPGWMGSVCNVP-CTPGMWGQGCTVPCECF 307
P T C CR NG G+C C+PGW G C C P C
Sbjct: 387 PAQTLTSECSRLCR--NGYCTP--TGKCCCSPGWEGDFCRTAKCEP-----------ACR 431
Query: 308 NGASCHHVTGECQCEPGFKGQKC 330
+G C +C C+ G+ G +C
Sbjct: 432 HGGVCVR-PNKCLCKKGYLGPQC 453
Score = 36.5 bits (84), Expect = 0.039
Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 3/32 (9%)
Query: 2 ECVPVCTDECIRGTCIAPNTCKCEVGFGGPTC 33
+C P C G C+ PN C C+ G+ GP C
Sbjct: 425 KCEPACRHG---GVCVRPNKCLCKKGYLGPQC 453
Score = 36.1 bits (83), Expect = 0.041
Identities = 23/93 (24%), Positives = 30/93 (32%), Gaps = 16/93 (17%)
Query: 155 GPTCNIEC-PEGHYGPDCKLACQCENGAGCDPNTGACDCLDGYMGTHCEEVCGPGRFGQN 213
C P +C C G TG C C G+ G C
Sbjct: 378 PEECRATVQPAQTLTSECSRLC----RNGYCTPTGKCCCSPGWEGDFCR----------T 423
Query: 214 CSQECQCRNGAECHPATGECSCQPGFTGSLCEE 246
E CR+G C +C C+ G+ G CE+
Sbjct: 424 AKCEPACRHGGVC-VRPNKCLCKKGYLGPQCEQ 455
Score = 34.6 bits (79), Expect = 0.13
Identities = 24/82 (29%), Positives = 31/82 (37%), Gaps = 17/82 (20%)
Query: 743 PPGTHGPSCINRCRCQNGAICNPANGQCLCAPGWMGSVCNVP-CTPGMWGQGCTVPCECF 801
P T C CR NG G+C C+PGW G C C P C
Sbjct: 387 PAQTLTSECSRLCR--NGYCTP--TGKCCCSPGWEGDFCRTAKCEP-----------ACR 431
Query: 802 NGASCHHVTGECQCEPGFKGQK 823
+G C +C C+ G+ G +
Sbjct: 432 HGGVCVR-PNKCLCKKGYLGPQ 452
Score = 31.9 bits (72), Expect = 0.88
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
Query: 742 CPPGTHGPSC-INRCR--CQNGAICNPANGQCLCAPGWMGSVC 781
C PG G C +C C++G +C N +CLC G++G C
Sbjct: 412 CSPGWEGDFCRTAKCEPACRHGGVCVRPN-KCLCKKGYLGPQC 453
Score = 28.4 bits (63), Expect = 9.8
Identities = 25/74 (33%), Positives = 29/74 (39%), Gaps = 10/74 (13%)
Query: 371 GAKCKERTCPDGLYGEGCDRTCECNVENTKLCHAVTGKCECGPGWDGLTCDRP-C-PITR 428
+C+ P C R C N T TGKC C PGW+G C C P R
Sbjct: 378 PEECRATVQPAQTLTSECSRLC-RNGYCT-----PTGKCCCSPGWEGDFCRTAKCEPACR 431
Query: 429 WGDNCSQ--HCNCK 440
G C + C CK
Sbjct: 432 HGGVCVRPNKCLCK 445
>2hr7_A Insulin receptor; hormone receptor, leucine rich repeat,
transferase; HET: NAG BMA MAN FUC P33; 2.32A {Homo
sapiens}
Length = 486
Score = 45.6 bits (107), Expect = 5e-05
Identities = 33/224 (14%), Positives = 50/224 (22%), Gaps = 20/224 (8%)
Query: 212 QNCSQECQCRNGAECHPATGECSCQPGFTGSLCEERCPPGTHGPSCINRCRCQNGAICNP 271
C + CP + C I
Sbjct: 123 NELCYLATIDWSRILDSVEDNHIVLNKDDNEECGDICPGT-----AKGKTNCPATVINGQ 177
Query: 272 ANGQCLCAPGWMGSVCNVPCTPGMWGQGCTVPCECF------NGASCHHVTGECQCEPGF 325
+C W S C C GCT C N + T C +
Sbjct: 178 FVERC-----WTHSHCQKVCPTICKSHGCTAEGLCCHSECLGNCSQPDDPTKCVACRNFY 232
Query: 326 KGQKCMDPCPEGTWGKQ---CVHYCSCPVESMECSRIDGNCSCPPGFRGAKCKERTCPDG 382
+C++ CP + Q CV++ C +C KC CP G
Sbjct: 233 LDGRCVETCPPPYYHFQDWRCVNFSFCQDLHHKCKNSRRQGCHQYVIHNNKC-IPECPSG 291
Query: 383 LYGEGCDRTCECNVENTKLCHAVTGKCECGPGWDGLTCDRPCPI 426
+ C + + + R C +
Sbjct: 292 YTMNSSNLLCTPCLGPCPKVCHLLEGEKTIDSVTSAQELRGCTV 335
Score = 42.9 bits (100), Expect = 3e-04
Identities = 36/239 (15%), Positives = 51/239 (21%), Gaps = 16/239 (6%)
Query: 35 IAKDAKTKPTDTYTFRLMFPQCMDPCPEGTWGKQCVHYCSCP---VESMECSRIDGNCSC 91
I K+ + T + + D CP C N
Sbjct: 119 IEKNNELCYLATIDWSRILDSVEDNHIVLNKDDNEECGDICPGTAKGKTNCPATVINGQF 178
Query: 92 PPGFRGAKCKERTCPDGLYGEGCDRTCECNVENTKLCVPVCTDECIRGTCIAPNTCKCEV 151
++ CP GC C C+ C+ C+A C
Sbjct: 179 VERCWTHSHCQKVCPTICKSHGCTAEGLCCHSE---CLGNCSQPDDPTKCVA-----CRN 230
Query: 152 GFGGPTCNIECPEGHYGPDCKLACQCENGA----GCDPNTGACDCLDGYMGTHCEEVCGP 207
+ C CP +Y C + C C
Sbjct: 231 FYLDGRCVETCPPPYYHFQDWRCVNFSFCQDLHHKCKNSRRQGCHQYVIHNNKCIPECPS 290
Query: 208 GRFGQNCSQECQ-CRNGAECHPATGECSCQPGFTGSLCEERCPPGTHGPSCINRCRCQN 265
G + + C C E S E R +G IN N
Sbjct: 291 GYTMNSSNLLCTPCLGPCPKVCHLLEGEKTIDSVTSAQELRGCTVINGSLIINIRGGNN 349
Score = 42.5 bits (99), Expect = 4e-04
Identities = 27/195 (13%), Positives = 51/195 (26%), Gaps = 22/195 (11%)
Query: 175 CQCENGAGCDPNTGACDCLDGYMGTHCEEVCGPGRFGQNCSQECQCR------NGAECHP 228
+ +HC++VC C+ E C N ++
Sbjct: 162 TAKGKTNCPATVINGQFVERCWTHSHCQKVCPTICKSHGCTAEGLCCHSECLGNCSQPDD 221
Query: 229 ATGECSCQPGFTGSLCEERCPPGTHGPSCINRCRCQNGAICNPANGQCLCAPGWMGSVCN 288
T +C+ + C E CPP + +
Sbjct: 222 PTKCVACRNFYLDGRCVETCPPPYYHFQDWRCVNFSFCQDLHHKCKNS----------RR 271
Query: 289 VPCTPGMWGQGCTVPCECFNGASCHHVTGECQCEPGFKGQKCMDPCPEGTWGKQCVHYCS 348
C + +P C +G + + C G + C E + + +
Sbjct: 272 QGCHQYVIHNNKCIPE-CPSGYTMNSSNLLCTPCLGPCPKVCHLLEGE-----KTIDSVT 325
Query: 349 CPVESMECSRIDGNC 363
E C+ I+G+
Sbjct: 326 SAQELRGCTVINGSL 340
Score = 39.1 bits (90), Expect = 0.006
Identities = 23/172 (13%), Positives = 33/172 (19%), Gaps = 11/172 (6%)
Query: 507 CSPGSGQCVCRPGGAGQLCDRPCSEGRYGQNCTQECRCMNGAACNPQDGTCLCPAGYYGP 566
+ + C C G +NG C
Sbjct: 137 LDSVEDNHIVLNKDDNEECGDICP-GTAKGKTNCPATVINGQFVERCWTHSHCQ-----K 190
Query: 567 LCQKRCEFMTYGRNCAQACTCFTENSQGCDIVTGKCICRPGFKGHRCETQCSNPNTYGED 626
+C C+ + N D T CR + RC C P Y
Sbjct: 191 VCPTICKSHGCTAEGLCCHSECLGNCSQPDDPTKCVACRNFYLDGRCVETC-PPPYYHFQ 249
Query: 627 CSLDCGCNNGGTCNQLDGGCNC----GRGYQGKLCTAPCPEGQYGYNCKEEC 674
+ + C CP G + C
Sbjct: 250 DWRCVNFSFCQDLHHKCKNSRRQGCHQYVIHNNKCIPECPSGYTMNSSNLLC 301
Score = 37.9 bits (87), Expect = 0.013
Identities = 26/203 (12%), Positives = 45/203 (22%), Gaps = 13/203 (6%)
Query: 475 FSGRHCEKPCPQGSYGQDCSQTCLCSKEGSASCSPGSG-QCVCRPGGAGQLCDRPCSEGR 533
C CP + G+ + + + C S Q VC C
Sbjct: 150 DDNEECGDICPGTAKGKTNCPATVINGQFVERCWTHSHCQKVCPTICKSHGCTAEG---- 205
Query: 534 YGQNCTQECRCMNGAACNPQDGTCLCPAGYYGPLCQKRCEFMTYGRNCAQACTCFT--EN 591
C N + + C Y C + C Y + +
Sbjct: 206 ---LCCHSECLGNCSQPDDPTKCVACRNFYLDGRCVETCPPPYYHFQDWRCVNFSFCQDL 262
Query: 592 SQGCDIVTGKCICRPGFKGHRCETQCSNPNTYGED---CSLDCGCNNGGTCNQLDGGCNC 648
C + + ++C +C + T C+ G
Sbjct: 263 HHKCKNSRRQGCHQYVIHNNKCIPECPSGYTMNSSNLLCTPCLGPCPKVCHLLEGEKTID 322
Query: 649 GRGYQGKLCTAPCPEGQYGYNCK 671
+L G N +
Sbjct: 323 SVTSAQELRGCTVINGSLIINIR 345
>1x7a_L Coagulation factor IX, light chain; inhibition, blood
clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP:
g.3.11.1 g.3.11.1 PDB: 1pfx_L*
Length = 146
Score = 42.0 bits (99), Expect = 1e-04
Identities = 24/128 (18%), Positives = 39/128 (30%), Gaps = 25/128 (19%)
Query: 147 CKCEVGFGGPTCNIECPEGHYGPDCKLACQCENGAGC--DPNTGACDCLDGYMGTHCEEV 204
E ++ + P C NG C D N+ C C G+ G +CE
Sbjct: 33 ENTEKTNEFWKQYVDGDQCEPNP-------CLNGGLCKDDINSYECWCQVGFEGKNCELD 85
Query: 205 CGPGRFGQNCSQECQCRNGAECHPATG--ECSCQPGFTGSLCEERCPPGTHGPSCINRCR 262
C+ + A CSC G+ + ++ C P P
Sbjct: 86 A-------TCNIKNGRCKQFCKTGADSKVLCSCTTGYRLAPDQKSCKPAVPFP------- 131
Query: 263 CQNGAICN 270
C ++ +
Sbjct: 132 CGRVSVSH 139
Score = 40.4 bits (95), Expect = 5e-04
Identities = 26/122 (21%), Positives = 32/122 (26%), Gaps = 22/122 (18%)
Query: 201 CEEVCGPGRFGQNCSQEC------QCRNGAECHPATG--ECSCQPGFTGSLCEERCPPGT 252
E + C NG C EC CQ GF G CE
Sbjct: 31 VFENTEKTNEFWKQYVDGDQCEPNPCLNGGLCKDDINSYECWCQVGFEGKNCELDAT--- 87
Query: 253 HGPSCINRCRCQNGAICNPANG-QCLCAPGWMGSVCNVPCTPGMWGQGCTVPCECFNGAS 311
I RC+ + C C G+ + C P VP C +
Sbjct: 88 ---CNIKNGRCKQFCKTGADSKVLCSCTTGYRLAPDQKSCKP-------AVPFPCGRVSV 137
Query: 312 CH 313
H
Sbjct: 138 SH 139
Score = 37.7 bits (88), Expect = 0.004
Identities = 17/120 (14%), Positives = 29/120 (24%), Gaps = 23/120 (19%)
Query: 529 CSEGRYGQNCTQECR------CMNGAACNPQDG--TCLCPAGYYGPLCQKRCEFMTYGRN 580
+ + C+NG C C C G+ G C+
Sbjct: 35 TEKTNEFWKQYVDGDQCEPNPCLNGGLCKDDINSYECWCQVGFEGKNCELDATCNIKNGR 94
Query: 581 CAQACTCFTENSQGCDIVTGKCICRPGFKGHRCETQCSNPNTYGEDCSLDCGCNNGGTCN 640
C Q C ++ C C G++ + C + C +
Sbjct: 95 CKQFCKTGADSK-------VLCSCTTGYRLAPDQKSC-------KPAV-PFPCGRVSVSH 139
Score = 36.2 bits (84), Expect = 0.011
Identities = 15/65 (23%), Positives = 22/65 (33%), Gaps = 10/65 (15%)
Query: 601 KCICRPGFKGHRCETQCSNPNTYGEDCSLDCGCNNGGTCNQLDGG--CNCGRGYQGKLCT 658
+C C+ GF+G CE C++ G D C+C GY+
Sbjct: 70 ECWCQVGFEGKNCELDA--------TCNIKNGRCKQFCKTGADSKVLCSCTTGYRLAPDQ 121
Query: 659 APCPE 663
C
Sbjct: 122 KSCKP 126
Score = 34.6 bits (80), Expect = 0.037
Identities = 15/108 (13%), Positives = 23/108 (21%), Gaps = 18/108 (16%)
Query: 233 CSCQPGFTGSLCEERCPPGTHGPSCINRCRCQNGAICNPANG--QCLCAPGWMGSVCNVP 290
+ + P C NG +C +C C G+ G C +
Sbjct: 33 ENTEKTNEFWKQYVDGDQCEPNP-------CLNGGLCKDDINSYECWCQVGFEGKNCELD 85
Query: 291 CTPGMWGQGCTVPCECFNGASCHHVTG--ECQCEPGFKGQKCMDPCPE 336
T C C G++ C
Sbjct: 86 ATC------NIKNG-RCKQFCKTGADSKVLCSCTTGYRLAPDQKSCKP 126
Score = 32.7 bits (75), Expect = 0.17
Identities = 20/71 (28%), Positives = 27/71 (38%), Gaps = 8/71 (11%)
Query: 306 CFNGASCHHVTG--ECQCEPGFKGQKCMDPCPEGTWGKQCVHYCSCPVESMECSRIDGNC 363
C NG C EC C+ GF+G+ C +C +C +S C
Sbjct: 56 CLNGGLCKDDINSYECWCQVGFEGKNCELDATCNIKNGRCKQFCKTGADS------KVLC 109
Query: 364 SCPPGFRGAKC 374
SC G+R A
Sbjct: 110 SCTTGYRLAPD 120
Score = 32.7 bits (75), Expect = 0.20
Identities = 17/97 (17%), Positives = 25/97 (25%), Gaps = 17/97 (17%)
Query: 736 RECEERCPPGTHGPSC---INRCR---CQNGAICNPANG--QCLCAPGWMGSVCNVPCTP 787
RE E ++C C NG +C +C C G+ G C + T
Sbjct: 29 REVFENTEKTNEFWKQYVDGDQCEPNPCLNGGLCKDDINSYECWCQVGFEGKNCELDATC 88
Query: 788 GMWGQGCTVPCECFNGASCHHVTG--ECQCEPGFKGQ 822
C C G++
Sbjct: 89 ------NIKNG-RCKQFCKTGADSKVLCSCTTGYRLA 118
Score = 32.3 bits (74), Expect = 0.26
Identities = 17/104 (16%), Positives = 27/104 (25%), Gaps = 15/104 (14%)
Query: 478 RHCEKPCPQGSYGQDCSQTC------LCSKEGSASCSPGSGQCVCRPGGAGQLCDRPCSE 531
R + + + C G S +C C+ G G+ C+ +
Sbjct: 29 REVFENTEKTNEFWKQYVDGDQCEPNPCLNGGLCKDDINSYECWCQVGFEGKNCELDATC 88
Query: 532 GRYGQNCTQECRCMNGAACNPQDG--TCLCPAGYYGPLCQKRCE 573
+ D C C GY QK C+
Sbjct: 89 ------NIKNG-RCKQFCKTGADSKVLCSCTTGYRLAPDQKSCK 125
Score = 29.2 bits (66), Expect = 2.5
Identities = 14/74 (18%), Positives = 19/74 (25%), Gaps = 15/74 (20%)
Query: 742 CPPGTHGPSC---INRCR---CQNGAICNPANG--QCLCAPGWMGSVCNVPCTPGMWGQG 793
C G G +C A+ C C G+ + C P
Sbjct: 73 CQVGFEGKNCELDATCNIKNGRCKQFCKTGADSKVLCSCTTGYRLAPDQKSCKP------ 126
Query: 794 CTVPCECFNGASCH 807
VP C + H
Sbjct: 127 -AVPFPCGRVSVSH 139
>2vh0_B Activated factor XA light chain; serine protease, EGF-like domain,
blood coagulation, polymorphism, glycoprotein,
hydroxylation; HET: GSI; 1.7A {Homo sapiens} PDB:
1ezq_B* 1f0s_B* 1ksn_B* 1f0r_B* 1lpk_A* 1lpz_A* 1lqd_A*
1nfw_B* 1nfx_B* 1nfy_B* 2boh_A* 2cji_B* 1lpg_A* 2j34_B*
2j38_B* 2j2u_B* 2j94_B* 2j95_B* 2uwl_B* 2j4i_B* ...
Length = 134
Score = 41.1 bits (97), Expect = 2e-04
Identities = 25/128 (19%), Positives = 38/128 (29%), Gaps = 24/128 (18%)
Query: 146 TCKCEVGFGGPTCNIECPEGHYGPDCKLACQCENGAGCDPNTGA--CDCLDGYMGTHCEE 203
+ + + P C+N C G C CL+G+ G +CE
Sbjct: 26 FEDSDKTNEFWNKYKDGDQCETSP-------CQNQGKCKDGLGEYTCTCLEGFEGKNCEL 78
Query: 204 VCGPGRFGQNCSQECQCRNGAECHPATG--ECSCQPGFTGSLCEERCPPGTHGPSCINRC 261
+ CS + CH CSC G+T + + C P P
Sbjct: 79 FTR-----KLCSLDN-GDCDQFCHEEQNSVVCSCARGYTLADNGKACIPTGPYP------ 126
Query: 262 RCQNGAIC 269
C +
Sbjct: 127 -CGKQTLE 133
Score = 40.0 bits (94), Expect = 5e-04
Identities = 25/145 (17%), Positives = 36/145 (24%), Gaps = 32/145 (22%)
Query: 177 CENGAGC--DPNTGACDCLDGYMGTHCEEVCGPGRFGQNCSQECQ---CRNGAECHPATG 231
C + D + + +C+ C+N +C G
Sbjct: 12 CMEETCSYEEAREVFEDSDKTNEFWNKYKDG----------DQCETSPCQNQGKCKDGLG 61
Query: 232 --ECSCQPGFTGSLCEERCPPGTHGPSCINRCRCQNGAICNPANG--QCLCAPGWMGSVC 287
C+C GF G CE C C+ C CA G+ +
Sbjct: 62 EYTCTCLEGFEGKNCELFTRK-----LCSLDN-GDCDQFCHEEQNSVVCSCARGYTLADN 115
Query: 288 NVPCTPGMWGQGCTVPCECFNGASC 312
C P T P C
Sbjct: 116 GKACIP-------TGPYPCGKQTLE 133
Score = 38.0 bits (89), Expect = 0.002
Identities = 20/123 (16%), Positives = 28/123 (22%), Gaps = 19/123 (15%)
Query: 220 CRNGAECHPATGE--CSCQPGFTGSLCEERCPPGTHGPSCINRCRCQNGAICNPANG--Q 275
C + E + P CQN C G
Sbjct: 12 CMEETCSYEEAREVFEDSDKTNEFWNKYKDGDQCETSP-------CQNQGKCKDGLGEYT 64
Query: 276 CLCAPGWMGSVCNVPCTPGMWGQGCTVPCECFNGASCHHVTG--ECQCEPGFKGQKCMDP 333
C C G+ G C + + C++ CH C C G+
Sbjct: 65 CTCLEGFEGKNCELFTR-----KLCSLDN-GDCDQFCHEEQNSVVCSCARGYTLADNGKA 118
Query: 334 CPE 336
C
Sbjct: 119 CIP 121
Score = 35.0 bits (81), Expect = 0.028
Identities = 19/119 (15%), Positives = 28/119 (23%), Gaps = 22/119 (18%)
Query: 529 CSEGRYGQNCTQECR------CMNGAACNPQDG--TCLCPAGYYGPLCQKRCEFMTYGRN 580
+ N ++ C N C G TC C G+ G C+ + N
Sbjct: 29 SDKTNEFWNKYKDGDQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSLDN 88
Query: 581 CAQACTCFTENSQGCDIVTGKCICRPGFKGHRCETQCSNPNTYGEDCSLDCGCNNGGTC 639
C E + + C C G+ C C
Sbjct: 89 GDCDQFCHEEQN------SVVCSCARGYTLADNGKAC-------IPTG-PYPCGKQTLE 133
Score = 32.6 bits (75), Expect = 0.15
Identities = 18/65 (27%), Positives = 24/65 (36%), Gaps = 9/65 (13%)
Query: 601 KCICRPGFKGHRCETQCSNPNTYGEDCSLDCGCNNGGTCNQLDGG--CNCGRGYQGKLCT 658
C C GF+G CE + CSLD + C++ C+C RGY
Sbjct: 64 TCTCLEGFEGKNCELFTR------KLCSLDN-GDCDQFCHEEQNSVVCSCARGYTLADNG 116
Query: 659 APCPE 663
C
Sbjct: 117 KACIP 121
Score = 30.0 bits (68), Expect = 1.3
Identities = 20/97 (20%), Positives = 29/97 (29%), Gaps = 16/97 (16%)
Query: 736 RECEERCPPGTHGPSC---INRCR---CQNGAICNPANG--QCLCAPGWMGSVCNVPCTP 787
RE E + ++C CQN C G C C G+ G C +
Sbjct: 23 REVFEDSDKTNEFWNKYKDGDQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTR- 81
Query: 788 GMWGQGCTVPCECFNGASCHHVTG--ECQCEPGFKGQ 822
+ C++ CH C C G+
Sbjct: 82 ----KLCSLDN-GDCDQFCHEEQNSVVCSCARGYTLA 113
>1mox_A Epidermal growth factor receptor; EGFR, receptor, complex,
transferase-growth F complex; HET: NAG FUC BMA MAN;
2.50A {Homo sapiens} SCOP: c.10.2.5 c.10.2.5 g.3.9.1
g.3.9.1
Length = 501
Score = 43.4 bits (101), Expect = 2e-04
Identities = 27/208 (12%), Positives = 51/208 (24%), Gaps = 24/208 (11%)
Query: 43 PTDTYTFRLMFPQCMDPCPEGTWGKQCVHYCSCPVESMECSRIDGNC-SCPPGFRGAKCK 101
+ +L C C GK C + + +C C A CK
Sbjct: 178 AGEENCQKLTKIICAQQCSGRCRGKSPSDCCHNQCAAGCTGPRESDCLVCRKFRDEATCK 237
Query: 102 ERTCPDGLYGEGCDRTCECNVENTKLCVPVCTDECIRGTCIAPNTCKCEVGFGGPTCNIE 161
+ TCP + + N E C +C + V +C
Sbjct: 238 D-TCPPLMLYNPTTYQMDVNPEGKYSFGATCVKKC----------PRNYVVTDHGSCVRA 286
Query: 162 CPEGHYGPDCKLACQCENGAG------------CDPNTGACDCLDGYMGTHCEEVCGPGR 209
C Y + +C+ G ++ + + + +C + G
Sbjct: 287 CGADSYEMEEDGVRKCKKCEGPCRKVCNGIGIGEFKDSLSINATNIKHFKNCTSISGDLH 346
Query: 210 FGQNCSQECQCRNGAECHPATGECSCQP 237
+ + P +
Sbjct: 347 ILPVAFRGDSFTHTPPLDPQELDILKTV 374
Score = 36.1 bits (82), Expect = 0.056
Identities = 32/244 (13%), Positives = 56/244 (22%), Gaps = 20/244 (8%)
Query: 128 CVPVCTDECIRGTCIAPNTCKCEVGFGGPTCNIECPEGHYGPDCKLACQCENGAGCDPNT 187
+C E I+ I + + C + C +C + G
Sbjct: 129 NPALCNVESIQWRDIVSSDFLSNMSMDFQNHLGSCQK------CDPSCPNGSCWGAGEE- 181
Query: 188 GACDCLDGYMGTHCEEVCGPGRFGQNCSQECQCRNGAECH-PATGEC-SCQPGFTGSLCE 245
C + C G++ S C + A C P +C C+ + C+
Sbjct: 182 ----NCQKLTKIICAQQCSGRCRGKSPSDCCHNQCAAGCTGPRESDCLVCRKFRDEATCK 237
Query: 246 ERCPPGTHGPSCINRC-RCQNGAICNPANGQCLCAPGWM---GSVCNVPCTPGMWGQGCT 301
+ CPP + G A C ++ C C +
Sbjct: 238 DTCPPLMLYNPTTYQMDVNPEGKYSFGATCVKKCPRNYVVTDHGSCVRACGADSYEMEED 297
Query: 302 VPCECFNGASCHHVTGECQCEPGFKGQKCMDPCPEGTWGKQCVHYCSCPVESMECSRIDG 361
+C C + G K + G
Sbjct: 298 GVRKC---KKCEGPCRKVCNGIGIGEFKDSLSINATNIKHFKNCTSISGDLHILPVAFRG 354
Query: 362 NCSC 365
+
Sbjct: 355 DSFT 358
Score = 34.1 bits (77), Expect = 0.18
Identities = 33/207 (15%), Positives = 52/207 (25%), Gaps = 15/207 (7%)
Query: 486 QGSYGQDCSQTCLCSKEGSASCSPGSGQCVCRPGGAGQLCDRPCSEGRYGQNCTQECRCM 545
+ + S C P C GAG+ + ++ Q C+ CR
Sbjct: 145 SSDFLSNMSMDFQNHLGSCQKCDPSCPNGSC--WGAGEENCQKLTKIICAQQCSGRCRGK 202
Query: 546 NGAACNPQDGTCLCPAGYYGPLCQK--RCEFMTYGRNCAQACTCFTENSQGCDIVTGKCI 603
+ + C C AG GP C C C + T +
Sbjct: 203 SPSDCCHNQ----CAAGCTGPRESDCLVCRKFRDEATCKDTCPP----LMLYNPTTYQMD 254
Query: 604 CRPGFK---GHRCETQCSNPNTYGEDCSLDCGCNNGGTCNQLDGGCNCGRGYQGKLCTAP 660
P K G C +C + S C + DG C +
Sbjct: 255 VNPEGKYSFGATCVKKCPRNYVVTDHGSCVRACGADSYEMEEDGVRKCKKCEGPCRKVCN 314
Query: 661 CPEGQYGYNCKEECLTKGQDVPVRTAV 687
+ T + T++
Sbjct: 315 GIGIGEFKDSLSINATNIKHFKNCTSI 341
Score = 32.6 bits (73), Expect = 0.57
Identities = 23/154 (14%), Positives = 34/154 (22%), Gaps = 6/154 (3%)
Query: 479 HCEKPCPQGSYGQDCSQTCLCSKEGSASCSPGSGQCV-CRPGGAGQLCDRPCSEGRYGQN 537
C + C G+ S C ++ + P C+ CR C C
Sbjct: 190 ICAQQCSGRCRGKSPSDCC-HNQCAAGCTGPRESDCLVCRKFRDEATCKDTCPPLMLYNP 248
Query: 538 CTQEC-RCMNGAACNPQDGTCLCPAGYYGPL---CQKRCEFMTYGRNCAQACTCFTENSQ 593
T + G CP Y C + C +Y C
Sbjct: 249 TTYQMDVNPEGKYSFGATCVKKCPRNYVVTDHGSCVRACGADSYEMEEDGVRKCKKCEGP 308
Query: 594 GCDIVTGKCICRPGFKGHRCETQCSNPNTYGEDC 627
+ G I T +
Sbjct: 309 CRKVCNGIGIGEFKDSLSINATNIKHFKNCTSIS 342
Score = 31.4 bits (70), Expect = 1.3
Identities = 29/191 (15%), Positives = 42/191 (21%), Gaps = 14/191 (7%)
Query: 255 PSCINRCRCQNGAICNPANGQCLCAPGWMGSVCNVPCTPGMWGQGCTVPC--ECFNGASC 312
C C + N Q +C C+ G+ + C +C G +
Sbjct: 164 QKCDPSCPNGSCWGAGEENCQK-----LTKIICAQQCSGRCRGKSPSDCCHNQCAAGCTG 218
Query: 313 HHVTGECQCEPGFKGQKCMDPCPEGTWGKQCVHYCSCPVESMECSRIDGNCSCPPGFR-- 370
+ C C D CP + E CP +
Sbjct: 219 PRESDCLVCRKFRDEATCKDTCPPLMLYNPTTYQMDVNPEGKYSFGATCVKKCPRNYVVT 278
Query: 371 GAKCKERTCPDGLYGEGCDRTCECNVENTKLCHAVTGKCECGPGWDGLTCDRPCPITRWG 430
R C Y D +C K C K G G T
Sbjct: 279 DHGSCVRACGADSYEMEEDGVRKC-----KKCEGPCRKVCNGIGIGEFKDSLSINATNIK 333
Query: 431 DNCSQHCNCKN 441
+ +
Sbjct: 334 HFKNCTSISGD 344
Score = 29.5 bits (65), Expect = 4.6
Identities = 21/196 (10%), Positives = 41/196 (20%), Gaps = 17/196 (8%)
Query: 388 CDRTCECNVENTKLCHAVTGKCECGPGWDGLTCDRPCPITRWGDNCSQHCNCKNDALCFP 447
+C+ + E + C + C G + S C+ + A C
Sbjct: 159 HLGSCQKCDPSCPNGSCWGAGEENCQKLTKIICAQQCSGRCRGKSPSDCCHNQCAAGCTG 218
Query: 448 RNGTNTYQYFFLQSLTLFTFLSLTHSGFSGRHCEKPCPQGSYGQDCSQTCLCSKEGSASC 507
++ + C+ CP + + EG S
Sbjct: 219 PRESDCLVCRKFR---------------DEATCKDTCPPLMLYNPTTYQMDVNPEGKYSF 263
Query: 508 SPGSGQCV--CRPGGAGQLCDRPCSEGRYGQNCTQECRCMNGAACNPQDGTCLCPAGYYG 565
+ C R C Y +C + + +
Sbjct: 264 GATCVKKCPRNYVVTDHGSCVRACGADSYEMEEDGVRKCKKCEGPCRKVCNGIGIGEFKD 323
Query: 566 PLCQKRCEFMTYGRNC 581
L +
Sbjct: 324 SLSINATNIKHFKNCT 339
>2uvo_A Agglutinin isolectin 1; carbohydrate-binding protein, hevein
domain, chitin-binding, GERM agglutinin, chitin-binding
protein; HET: NDG NAG GOL; 1.40A {Triticum aestivum}
PDB: 1wgc_A* 2cwg_A* 2uwg_A* 2x3t_A* 4aml_A* 7wga_A
9wga_A 2wgc_A 1wgt_A 1k7t_A* 1k7v_A* 1k7u_A 2uwz_A*
2x52_A* 1t0w_A*
Length = 171
Score = 41.6 bits (97), Expect = 2e-04
Identities = 24/152 (15%), Positives = 31/152 (20%)
Query: 139 GTCIAPNTCKCEVGFGGPTCNIECPEGHYGPDCKLACQCENGAGCDPNTGACDCLDGYMG 198
C C + G C + C G C Y G
Sbjct: 16 LCCSQYGYCGMGGDYCGKGCQNGACWTSKRCGSQAGGATCTNNQCCSQYGYCGFGAEYCG 75
Query: 199 THCEEVCGPGRFGQNCSQECQCRNGAECHPATGECSCQPGFTGSLCEERCPPGTHGPSCI 258
C+ + C G C F G C+
Sbjct: 76 AGCQGGPCRADIKCGSQAGGKLCPNNLCCSQWGFCGLGSEFCGGGCQSGACSTDKPCGKD 135
Query: 259 NRCRCQNGAICNPANGQCLCAPGWMGSVCNVP 290
R C G C PG+ G+ C
Sbjct: 136 AGGRVCTNNYCCSKWGSCGIGPGYCGAGCQSG 167
Score = 36.9 bits (85), Expect = 0.011
Identities = 24/152 (15%), Positives = 33/152 (21%)
Query: 179 NGAGCDPNTGACDCLDGYMGTHCEEVCGPGRFGQNCSQECQCRNGAECHPATGECSCQPG 238
C G C Y G C+ +C G C
Sbjct: 13 PNNLCCSQYGYCGMGGDYCGKGCQNGACWTSKRCGSQAGGATCTNNQCCSQYGYCGFGAE 72
Query: 239 FTGSLCEERCPPGTHGPSCINRCRCQNGAICNPANGQCLCAPGWMGSVCNVPCTPGMWGQ 298
+ G+ C+ + +C G C + G C
Sbjct: 73 YCGAGCQGGPCRADIKCGSQAGGKLCPNNLCCSQWGFCGLGSEFCGGGCQSGACSTDKPC 132
Query: 299 GCTVPCECFNGASCHHVTGECQCEPGFKGQKC 330
G C G C PG+ G C
Sbjct: 133 GKDAGGRVCTNNYCCSKWGSCGIGPGYCGAGC 164
Score = 35.4 bits (81), Expect = 0.027
Identities = 27/155 (17%), Positives = 38/155 (24%), Gaps = 1/155 (0%)
Query: 226 CHPATGECSCQPGFTGSLCEERCPPGTHGPSCINRCRCQNGAICNPANGQCLCAPGWMGS 285
C G C + G C+ + C G C + G+
Sbjct: 17 CCSQYGYCGMGGDYCGKGCQNGACWTSKRCGSQAGGATCTNNQCCSQYGYCGFGAEYCGA 76
Query: 286 VCNVPCTPGMWGQGCTVPCECFNGASCHHVTGECQCEPGFKGQKCMDPCPEGTWGKQCVH 345
C G + C G C F G C
Sbjct: 77 GCQGGPCRADIKCGSQAGGKLCPNNLCCSQWGFCGLGSEFCGGGCQSGACSTDKPCGKDA 136
Query: 346 YCSCPVESMECSRIDGNCSCPPGFRGAKCKERTCP 380
+ CS+ G+C PG+ GA C+ C
Sbjct: 137 GGRVCTNNYCCSK-WGSCGIGPGYCGAGCQSGGCD 170
Score = 30.4 bits (68), Expect = 1.4
Identities = 32/170 (18%), Positives = 46/170 (27%), Gaps = 3/170 (1%)
Query: 491 QDCSQTCLCSKEGSASCSPGSGQCVCRPGGAGQLCDRPCSEGRYGQNCTQECRCMNGAAC 550
+ C + + + C G C G+ C C
Sbjct: 1 ERCGEQGSNMECPNNLCCSQYGYCGMGGDYCGKGCQNGACWTSKRCGSQAGGATCTNNQC 60
Query: 551 NPQDGTCLCPAGYYGPLCQKRCEFMTYGRNCAQACTCFTENSQGCDIVTGKCICRPGFKG 610
Q G C A Y G CQ C + C G C F G
Sbjct: 61 CSQYGYCGFGAEYCGAGCQGGPCRADI--KCGSQAGGKLCPNNLCCSQWGFCGLGSEFCG 118
Query: 611 HRCETQCSNPNTYGEDCSLDCGCNNGGTCNQLDGGCNCGRGYQGKLCTAP 660
C++ + + + C N C++ G C G GY G C +
Sbjct: 119 GGCQSGACSTDKPCGKDAGGRVCTNNYCCSK-WGSCGIGPGYCGAGCQSG 167
Score = 29.6 bits (66), Expect = 2.8
Identities = 23/174 (13%), Positives = 36/174 (20%), Gaps = 15/174 (8%)
Query: 72 YCSCPVESMECSRIDGNCSCPPGFRGAKCKERTCPDGLYGEGCDRTCECNVENTKLCVPV 131
+ + C G C + G C+ C C
Sbjct: 7 GSNMECPNNLCCSQYGYCGMGGDYCGKGCQNGACWTSKRCGSQAGGATCT---------- 56
Query: 132 CTDECIRGTCIAPNTCKCEVGFGGPTCNIECPEGHYGPDCKLACQCENGAGCDPNTGACD 191
C C + G C + + C G C
Sbjct: 57 -----NNQCCSQYGYCGFGAEYCGAGCQGGPCRADIKCGSQAGGKLCPNNLCCSQWGFCG 111
Query: 192 CLDGYMGTHCEEVCGPGRFGQNCSQECQCRNGAECHPATGECSCQPGFTGSLCE 245
+ G C+ + C G C PG+ G+ C+
Sbjct: 112 LGSEFCGGGCQSGACSTDKPCGKDAGGRVCTNNYCCSKWGSCGIGPGYCGAGCQ 165
>1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A
{Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L*
Length = 195
Score = 41.3 bits (97), Expect = 5e-04
Identities = 27/166 (16%), Positives = 41/166 (24%), Gaps = 30/166 (18%)
Query: 132 CTDECIRGTC----IAPNTCKCEVGFGGPTCNIECPEGHYGPDCKLACQCENGAGC--DP 185
EC+ TC + + + P C+N C
Sbjct: 8 LERECMEETCSYEEAREVFEDSDKTNEFWNKYKDGDQCETSP-------CQNQGKCKDGL 60
Query: 186 NTGACDCLDGYMGTHCEEVCGPGRFGQNCSQECQCRNGAECHPATG--ECSCQPGFTGSL 243
C CL+G+ G +CE + CH CSC G+T +
Sbjct: 61 GEYTCTCLEGFEGKNCELFT------RKLCSLDNGDCDQFCHEEQNSVVCSCARGYTLAD 114
Query: 244 CEERCPPGTHGPSCINRCRCQNGAICNPANG--QCLCAPGWMGSVC 287
+ C P C + Q + G
Sbjct: 115 NGKACIP-------TGPYPCGKQTLERRKRSVAQATSSSGEAPDSI 153
Score = 35.1 bits (81), Expect = 0.045
Identities = 19/128 (14%), Positives = 29/128 (22%), Gaps = 22/128 (17%)
Query: 529 CSEGRYGQNCTQECR------CMNGAACNPQDG--TCLCPAGYYGPLCQKRCEFMTYGRN 580
+ N ++ C N C G TC C G+ G C+ + N
Sbjct: 29 SDKTNEFWNKYKDGDQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSLDN 88
Query: 581 CAQACTCFTENSQGCDIVTGKCICRPGFKGHRCETQCSNPNTYGEDCSLDCGCNNGGTCN 640
C E + + C C G+ C C
Sbjct: 89 GDCDQFCHEEQN------SVVCSCARGYTLADNGKAC-------IPTG-PYPCGKQTLER 134
Query: 641 QLDGGCNC 648
+
Sbjct: 135 RKRSVAQA 142
Score = 28.2 bits (63), Expect = 7.7
Identities = 17/143 (11%), Positives = 28/143 (19%), Gaps = 22/143 (15%)
Query: 509 PGSGQCVCRPGGAGQLCDRPCSEGRYGQNCTQECRCMNGAACNPQDG--TCLCPAGYYGP 566
G C C G G+ C+ + N C+ + C C GY
Sbjct: 60 LGEYTCTCLEGFEGKNCELFTRKLCSLDNG------DCDQFCHEEQNSVVCSCARGYTLA 113
Query: 567 LCQKRCEFMTYGRNCAQACTCFTENSQGCDIVTGKCICRPGFKGHRCETQCSNPNTYGED 626
K C C + + + G + +
Sbjct: 114 DNGKACIP-------TGPYPCGKQTLERRKRSVAQATSSSGEAPDSITWKPYDAADLDP- 165
Query: 627 CSLDCGCNNGGTCNQLDGGCNCG 649
N +
Sbjct: 166 ------TENPFDLLDFNQTQPER 182
>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor
complex, blood coagulation, CL PAIR of basic residues,
disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A
{Homo sapiens}
Length = 317
Score = 41.6 bits (98), Expect = 7e-04
Identities = 18/91 (19%), Positives = 30/91 (32%), Gaps = 6/91 (6%)
Query: 177 CENGAGCDPNTGA--CDCLDGYMGTHCEEVCGPGRFGQNCSQECQCRNGAECHPATGECS 234
C + C + C C GY G++CE + + C G E + CS
Sbjct: 13 CLHNGSCQDSIWGYTCTCSPGYEGSNCELAKNECHPERTDGCQHFCLPGQESY----TCS 68
Query: 235 CQPGFTGSLCEERCPPGTHGPSCINRCRCQN 265
C G+ ++C P + +
Sbjct: 69 CAQGYRLGEDHKQCVPHDQCACGVLTSEKRA 99
Score = 35.5 bits (82), Expect = 0.058
Identities = 21/110 (19%), Positives = 30/110 (27%), Gaps = 21/110 (19%)
Query: 544 CMNGAACNPQDG--TCLCPAGYYGPLCQKRCEFMTYGRNCAQACTCFTENSQGCDIVTGK 601
C++ +C TC C GY G C+ C E + GC
Sbjct: 13 CLHNGSCQDSIWGYTCTCSPGYEGSNCELA------------KNECHPERTDGCQ----- 55
Query: 602 CICRPGFKGHRCETQCSNPNTYGEDCSLDCGCNNGGTCNQLDGGCNCGRG 651
C PG + + C C+ GED +
Sbjct: 56 HFCLPGQESYTC--SCAQGYRLGEDHKQCVPHDQCACGVLTSEKRAPDLQ 103
Score = 35.1 bits (81), Expect = 0.081
Identities = 20/110 (18%), Positives = 29/110 (26%), Gaps = 23/110 (20%)
Query: 263 CQNGAICNPANG--QCLCAPGWMGSVCNVPCTPGMWGQGCTVPCECFNGASCHHVTGECQ 320
C + C + C C+PG+ GS CE T CQ
Sbjct: 13 CLHNGSCQDSIWGYTCTCSPGYEGS-----------------NCELAKNECHPERTDGCQ 55
Query: 321 --CEPGFKGQKCMDPCPEGTWGKQCVHYCSCPVESMECSRIDGNCSCPPG 368
C PG + C C +G + C + +
Sbjct: 56 HFCLPGQESYTC--SCAQGYRLGEDHKQCVPHDQCACGVLTSEKRAPDLQ 103
Score = 34.7 bits (80), Expect = 0.11
Identities = 18/87 (20%), Positives = 29/87 (33%), Gaps = 6/87 (6%)
Query: 220 CRNGAECHPATGE--CSCQPGFTGSLCEERCPPGTHGPSCINRCRCQNGAICNPANGQCL 277
C + C + C+C PG+ GS CE + CQ+ + + C
Sbjct: 13 CLHNGSCQDSIWGYTCTCSPGYEGSNCELA----KNECHPERTDGCQHFCLPGQESYTCS 68
Query: 278 CAPGWMGSVCNVPCTPGMWGQGCTVPC 304
CA G+ + C P +
Sbjct: 69 CAQGYRLGEDHKQCVPHDQCACGVLTS 95
Score = 33.1 bits (76), Expect = 0.35
Identities = 20/82 (24%), Positives = 25/82 (30%), Gaps = 4/82 (4%)
Query: 86 DGNCSCPPGFRGAKCKERTCPDGLYGEGCDR-TCECNVENTKLCVPVCTDECIRGTCIAP 144
N SC G C TC G G C+ EC+ E T C C TC
Sbjct: 14 LHNGSCQDSIWGYTC---TCSPGYEGSNCELAKNECHPERTDGCQHFCLPGQESYTCSCA 70
Query: 145 NTCKCEVGFGGPTCNIECPEGH 166
+ + +C G
Sbjct: 71 QGYRLGEDHKQCVPHDQCACGV 92
Score = 30.1 bits (68), Expect = 3.4
Identities = 13/72 (18%), Positives = 19/72 (26%), Gaps = 7/72 (9%)
Query: 601 KCICRPGFKGHRCETQCSNPNTYGEDCSLDCGCNNGGTCNQLDG-GCNCGRGYQGKLCTA 659
C C PG++G CE E + C+C +GY+
Sbjct: 27 TCTCSPGYEGSNCEL------AKNECHPERTDGCQHFCLPGQESYTCSCAQGYRLGEDHK 80
Query: 660 PCPEGQYGYNCK 671
C
Sbjct: 81 QCVPHDQCACGV 92
Score = 29.3 bits (66), Expect = 5.6
Identities = 20/84 (23%), Positives = 27/84 (32%), Gaps = 4/84 (4%)
Query: 498 LCSKEGSASCSPGSGQCVCRPGGAGQLCDRPCSEGRYGQNCTQECRCMNGAACNPQDGTC 557
C GS S C C PG G C+ +E + + C+ G + TC
Sbjct: 12 PCLHNGSCQDSIWGYTCTCSPGYEGSNCELAKNECHPERTDGCQHFCLPG----QESYTC 67
Query: 558 LCPAGYYGPLCQKRCEFMTYGRNC 581
C GY K+C
Sbjct: 68 SCAQGYRLGEDHKQCVPHDQCACG 91
Score = 28.9 bits (65), Expect = 6.1
Identities = 15/76 (19%), Positives = 22/76 (28%), Gaps = 13/76 (17%)
Query: 757 CQNGAICNPANG--QCLCAPGWMGSVCNV------PCTPGMWGQGC-----TVPCECFNG 803
C + C + C C+PG+ GS C + P C + C C G
Sbjct: 13 CLHNGSCQDSIWGYTCTCSPGYEGSNCELAKNECHPERTDGCQHFCLPGQESYTCSCAQG 72
Query: 804 ASCHHVTGECQCEPGF 819
+C
Sbjct: 73 YRLGEDHKQCVPHDQC 88
Score = 28.5 bits (64), Expect = 8.8
Identities = 10/28 (35%), Positives = 13/28 (46%), Gaps = 2/28 (7%)
Query: 633 CNNGGTCNQLDGG--CNCGRGYQGKLCT 658
C + G+C G C C GY+G C
Sbjct: 13 CLHNGSCQDSIWGYTCTCSPGYEGSNCE 40
>2p28_B Integrin beta-2; hybrid domain, PSI domain, I-EGF DOM cell
adhesion; HET: NAG; 2.20A {Homo sapiens} PDB: 1l3y_A
Length = 217
Score = 40.0 bits (93), Expect = 0.001
Identities = 26/138 (18%), Positives = 38/138 (27%), Gaps = 10/138 (7%)
Query: 115 DRTCECNVENTKLCVPVCTDECIRGTCIAPNTCKCEVGFGGPTCNIECPEGHYGPDCKLA 174
CEC + +C +G C+C+ G+ G C +
Sbjct: 81 LPQCECRCRDQSRDRSLCHG---KGFLEC-GICRCDTGYIGKNCECQTQGRSSQELEGSC 136
Query: 175 CQCENGAGCDPN----TGACDCLDGYMGTHC--EEVCGPGRFGQNCSQECQCRNGAECHP 228
+ N C G C C + + C C
Sbjct: 137 RKDNNSIICSGLGDCVCGQCLCHTSDVPGKLIYGQYCECDTINCERYNGQVCGGPGRGLC 196
Query: 229 ATGECSCQPGFTGSLCEE 246
G+C C PGF GS C+
Sbjct: 197 FCGKCRCHPGFEGSACQH 214
Score = 38.4 bits (89), Expect = 0.005
Identities = 24/129 (18%), Positives = 32/129 (24%), Gaps = 4/129 (3%)
Query: 492 DCSQTCLCSKEGSASCSPGSGQCVCRPGGAGQLCDRPCSEGRYGQNCTQECRCMNGAACN 551
C G C C G G+ C+ + + N C+
Sbjct: 87 RCRDQSRDRSLCHGKGFLECGICRCDTGYIGKNCECQTQGRSSQELEGSCRKDNNSIICS 146
Query: 552 P----QDGTCLCPAGYYGPLCQKRCEFMTYGRNCAQACTCFTENSQGCDIVTGKCICRPG 607
G CLC NC + GKC C PG
Sbjct: 147 GLGDCVCGQCLCHTSDVPGKLIYGQYCECDTINCERYNGQVCGGPGRGLCFCGKCRCHPG 206
Query: 608 FKGHRCETQ 616
F+G C+
Sbjct: 207 FEGSACQHH 215
Score = 38.1 bits (88), Expect = 0.006
Identities = 25/110 (22%), Positives = 33/110 (30%), Gaps = 6/110 (5%)
Query: 184 DPNTGACDCLDGYMGTHCEEVCGPGRFGQNCSQECQCRNGAECHP----ATGECSCQPGF 239
G C C GY+G +CE + + N C G+C C
Sbjct: 103 FLECGICRCDTGYIGKNCECQTQGRSSQELEGSCRKDNNSIICSGLGDCVCGQCLCHTSD 162
Query: 240 TGSLC--EERCPPGTHGPSCINRCRCQNGAICNPANGQCLCAPGWMGSVC 287
+ C T N C G+C C PG+ GS C
Sbjct: 163 VPGKLIYGQYCECDTINCERYNGQVCGGPGRGLCFCGKCRCHPGFEGSAC 212
Score = 35.0 bits (80), Expect = 0.055
Identities = 26/129 (20%), Positives = 34/129 (26%), Gaps = 13/129 (10%)
Query: 254 GPSCINRCRCQNGAICNPANGQCLCAPGWMGSVCNVPCTPGMWGQGCTVPCECFNGASCH 313
+R C G C C G++G C + + N C
Sbjct: 89 RDQSRDRSLCHGKGFLE--CGICRCDTGYIGKNCECQTQGRSSQELEGSCRKDNNSIICS 146
Query: 314 H----VTGECQCEPGFKGQKC----MDPCPEGTWGKQCVHYCSCPVESMECSRIDGNCSC 365
V G+C C K C + C P G C C
Sbjct: 147 GLGDCVCGQCLCHTSDVPGKLIYGQYCECDTINCERYNGQVCGGPG---RGLCFCGKCRC 203
Query: 366 PPGFRGAKC 374
PGF G+ C
Sbjct: 204 HPGFEGSAC 212
Score = 33.4 bits (76), Expect = 0.19
Identities = 26/128 (20%), Positives = 35/128 (27%), Gaps = 9/128 (7%)
Query: 535 GQNCTQECRCMNGAACNPQDGTCLCPAGYYGPLCQKRCEFMTYGRNCAQACTCFTEN--S 592
C G C C GY G C+ + + + S
Sbjct: 89 RDQSRDRSLCHGKGFLE--CGICRCDTGYIGKNCECQTQGRSSQELEGSCRKDNNSIICS 146
Query: 593 QGCDIVTGKCICRPGFKGHRCET--QCSNPNTYGED-CSLDCGCNNGGTCNQLDGGCNCG 649
D V G+C+C + C E CG G C G C C
Sbjct: 147 GLGDCVCGQCLCHTSDVPGKLIYGQYCECDTINCERYNGQVCGGPGRGLCF--CGKCRCH 204
Query: 650 RGYQGKLC 657
G++G C
Sbjct: 205 PGFEGSAC 212
Score = 31.1 bits (70), Expect = 1.0
Identities = 20/104 (19%), Positives = 31/104 (29%), Gaps = 8/104 (7%)
Query: 472 HSGFSGRHCEKPCPQGSYGQDC------SQTCLCSKEGSASCSPGSGQCVCRPGGAGQLC 525
+G+ G++CE S + + + +CS G C G C +
Sbjct: 112 DTGYIGKNCECQTQGRSSQELEGSCRKDNNSIICS--GLGDCVCGQCLCHTSDVPGKLIY 169
Query: 526 DRPCSEGRYGQNCTQECRCMNGAACNPQDGTCLCPAGYYGPLCQ 569
+ C C G C C G+ G CQ
Sbjct: 170 GQYCECDTINCERYNGQVCGGPGRGLCFCGKCRCHPGFEGSACQ 213
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial
hypercholesterolemia, cholestero metabolism, lipid
transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens}
SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1
g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A
1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Length = 699
Score = 40.6 bits (94), Expect = 0.002
Identities = 41/277 (14%), Positives = 60/277 (21%), Gaps = 23/277 (8%)
Query: 175 CQCENGAGCDPNT---GACDCLDGYMGTHCEEVCGPG--RFGQNCSQECQCRNGAECHPA 229
QC + DC DG CS EC +
Sbjct: 132 FQCNSSTCIPQLWACDNDPDCEDGSDEWPQRCRGLYVFQGDSSPCSAFEFHCLSGECIHS 191
Query: 230 TGECSCQPGFTGSLCEERCPPGTHGPSCINRCRCQNGAICNPANGQCLCAPGWMGSVCNV 289
+ C P EE C T + +C +G C G
Sbjct: 192 SWRCDGGPDCKDKSDEENCAVAT---CRPDEFQCSDGN----------CIHGSRQCDREY 238
Query: 290 PCTPGMWGQGCTVPCEC-----FNGASCHHVTGECQCEPGFKGQKCMDPCPEGTWGKQCV 344
C GC C F S +T + C + D + +C+
Sbjct: 239 DCKDMSDEVGCVNVTLCEGPNKFKCHSGECITLDKVCNMARDCRDWSDEPIKECGTNECL 298
Query: 345 HYCSCPVESMECSRIDGNCSCPPGFRGAKCKERTCPDGLYGEGCDRTCECNVENTKLCHA 404
+I C CP GF+ + D N+E C
Sbjct: 299 DNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDTCSQLCVNLEGGYKCQC 358
Query: 405 VTGKCECGPGWDGLTCDRPCPITRWGDNCSQHCNCKN 441
G + + +
Sbjct: 359 EEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMTLDR 395
Score = 32.9 bits (74), Expect = 0.50
Identities = 38/258 (14%), Positives = 60/258 (23%), Gaps = 30/258 (11%)
Query: 105 CPDGLYGEGCDRTCECNVENTKLCVPVCTDECIRGTCIAPNTCKCEVGFGGPTCNIECPE 164
C DG + C+ G CI ++ +C+ G + E
Sbjct: 152 CEDGSDEWPQRCRGLYVFQGDSSPCSAFEFHCLSGECI-HSSWRCDGGPDCKDKSDEENC 210
Query: 165 GHYGPDCKLACQCENGAGCDPNTGAC----DCLDGYMGTHCE---EVCGPGRF------- 210
QC +G C + C DC D C GP +F
Sbjct: 211 A-VATCRPDEFQCSDG-NCIHGSRQCDREYDCKDMSDEVGCVNVTLCEGPNKFKCHSGEC 268
Query: 211 ---GQNCSQECQCRNGA----------ECHPATGECSCQPGFTGSLCEERCPPGTHGPSC 257
+ C+ CR+ + EC G CS E CP G +
Sbjct: 269 ITLDKVCNMARDCRDWSDEPIKECGTNECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQ 328
Query: 258 INRCRCQNGAICNPANGQCLCAPGWMGSVCNVPCTPGMWGQGCTVPCECFNGASCHHVTG 317
+ + C+ G C + C +
Sbjct: 329 RRCEDIDECQDPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEV 388
Query: 318 ECQCEPGFKGQKCMDPCP 335
+ +
Sbjct: 389 RKMTLDRSEYTSLIPNLR 406
Score = 32.1 bits (72), Expect = 0.99
Identities = 52/387 (13%), Positives = 73/387 (18%), Gaps = 39/387 (10%)
Query: 291 CTPGMWGQGCTVPCECFNGASCHHVTGECQCEPGFKGQKCMDPCPEGTWGKQCVHYCSCP 350
C G T +C P F C G+ + C C
Sbjct: 31 CQDGSDESQETCLSVTCKSGDFSCGGRVNRCIPQFWRCDGQVDCDNGSDEQGCPPKT-CS 89
Query: 351 VESMECS---------RIDGNCSCPPGFRGAKCKERTCPDGLYGEGCDRTCECNVENTKL 401
+ C D + C G A C TC + +
Sbjct: 90 QDEFRCHDGKCISRQFVCDSDRDCLDGSDEASCPVLTCGPASFQCNSST----CIPQLWA 145
Query: 402 CHAVTGKCECGPGWDGLTCDRPCPITRWGD--NCSQHCNCKNDALCFPRNGTNTYQYFFL 459
C +C G D GD CS C +
Sbjct: 146 CD---NDPDCEDGSDEWPQRCRGLYVFQGDSSPCSAFEFHCLSGECIHSSWRCDGGPDCK 202
Query: 460 QSLTLFTFLSLTHSGFSGR-------------HCEKPCPQGSYGQDCSQTCLCSKEG--- 503
T + E C S C LC
Sbjct: 203 DKSDEENCAVATCRPDEFQCSDGNCIHGSRQCDREYDCKDMSDEVGCVNVTLCEGPNKFK 262
Query: 504 --SASCSPGSGQCVCRPGGAGQLCDRPCSEGRYGQNCTQECRCMNGAACNPQDGTCLCPA 561
S C C D P E + C + CLCP
Sbjct: 263 CHSGECITLDKVCNMARDCRDW-SDEPIKECGTNECLDNNGGCSHVCNDLKIGYECLCPD 321
Query: 562 GYYGPLCQKRCEFMTYGRNCAQACTCFTENSQGCDIVTGKCICRPGFKGHRCETQCSNPN 621
G+ Q+RCE + ++ G +
Sbjct: 322 GFQLV-AQRRCEDIDECQDPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKAVGSIAYL 380
Query: 622 TYGEDCSLDCGCNNGGTCNQLDGGCNC 648
+ + + L
Sbjct: 381 FFTNRHEVRKMTLDRSEYTSLIPNLRN 407
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex,
beta propeller, cholesterol clearance, PCSK
autocatalytic cleavage; 7.01A {Homo sapiens}
Length = 791
Score = 39.0 bits (90), Expect = 0.006
Identities = 49/318 (15%), Positives = 76/318 (23%), Gaps = 22/318 (6%)
Query: 86 DGNCSCPPGFRGAKCKERTCPDGLYGEGCDRTCECNVENTKLCVPVCTDECIRGTCIAPN 145
D + C G A C TC + C + +L +C G+ P
Sbjct: 126 DSDRDCLDGSDEASCPVLTCGPASF------QCNSSTCIPQLWACDNDPDCEDGSDEWPQ 179
Query: 146 TCKCEVGFGGPTCNIECPEGHYGPDCKLACQCENGAGCDPNTGACDCLDGYMGTHCEEVC 205
C+ F G + C + C +G C ++ CD EE C
Sbjct: 180 RCRGLYVFQGDSSP--CSAFEF--------HCLSGE-CIHSSWRCDGGPDCKDKSDEENC 228
Query: 206 GPGRFGQNCSQECQCRNGAECHPATGECSCQPGFTGSLCEERCPPGTHGPSCINRCRCQN 265
+ E QC +G C + +C + E C T N+ +C +
Sbjct: 229 AVATCRPD---EFQCSDG-NCIHGSRQCDREYDCKDMSDEVGCVNVT-LCEGPNKFKCHS 283
Query: 266 GAICNPANGQCLCAPGWMGSVCNVPCTPGMWGQGCTVPCECFNGASCHHVTGECQCEPGF 325
G + S + C C
Sbjct: 284 GECITLDKVCNMARDCRDWSDEPIKECGTNECLDNNGGCSHVCNDLKIGYECLCPDGFQL 343
Query: 326 KGQKCMDPCPEGTWGKQCVHYCSCPVESMECSRIDGNCSCPPGFRGAKCKERTCPDGLYG 385
Q+ + E C C +C +G P
Sbjct: 344 VAQRRCEDIDECQDPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNR 403
Query: 386 EGCDRTCECNVENTKLCH 403
+ E T L
Sbjct: 404 HEVRKMTLDRSEYTSLIP 421
Score = 36.0 bits (82), Expect = 0.060
Identities = 57/332 (17%), Positives = 87/332 (26%), Gaps = 34/332 (10%)
Query: 135 ECIRGTCIAPN-TCKCEVGFGGPTCNIECPEGHYGPDCKLACQCENGAGCDPNTGACD-- 191
C G CI+ C + + CP GP + QC + C P ACD
Sbjct: 112 RCHDGKCISRQFVCDSDRDCLDGSDEASCPVLTCGPA---SFQCNSST-CIPQLWACDND 167
Query: 192 --CLDGY--MGTHCEEVCGPGRFGQNCSQ-ECQCRNGAECHPATGECSCQPGFTGSLCEE 246
C DG C + CS E C +G EC ++ C P EE
Sbjct: 168 PDCEDGSDEWPQRCRGLYVFQGDSSPCSAFEFHCLSG-ECIHSSWRCDGGPDCKDKSDEE 226
Query: 247 RCPPGTHGPSCINRCRCQNGAICNPANGQCLCAPGWMGSVCNVPCTPGMWGQGCTVPCEC 306
C T P + +C +G C G C GC C
Sbjct: 227 NCAVATCRP---DEFQCSDGN----------CIHGSRQCDREYDCKDMSDEVGCVNVTLC 273
Query: 307 FNGASCHHVTGECQCEPGFKGQKCMDPCPEGTWGKQCVHYCSCPVESMECSRIDGNCSCP 366
+C K C + + C + + C
Sbjct: 274 --EGPNKFKCHSGECITLDKVCNMARDCRDWSDE----PIKECGTNECLDNNGGCSHVCN 327
Query: 367 PGFRGAKCKERTCPDGLYGEGCDRTCECNVEN--TKLCHAVTGKCECGPGWDGLTCDRPC 424
G +C + C+ EC + ++LC + G +C
Sbjct: 328 DLKIGYECLCPDGFQLVAQRRCEDIDECQDPDTCSQLCVNLEGGYKCQCEEGFQLDPHTK 387
Query: 425 PITRWGDNCSQHCNCKNDALCFPRNGTNTYQY 456
G +++ + +
Sbjct: 388 ACKAVGSIAYLFFTNRHEVRKMTLDRSEYTSL 419
Score = 31.0 bits (69), Expect = 1.9
Identities = 32/273 (11%), Positives = 62/273 (22%), Gaps = 17/273 (6%)
Query: 99 KCKERTCPDGLYGEGCDRTCECNVENTKLCVPVCTDE---CIRGTCIAPNTCKCEVGFGG 155
C C + C+ + V C + C G CI + +C+
Sbjct: 200 HCLSGECIHSSWRCDGGPDCKDKSDEENCAVATCRPDEFQCSDGNCI-HGSRQCD----- 253
Query: 156 PTCNIECPEGHYGPDCKLACQCENGAGCDPNTGACDCLDGY--MGTHCEEVCGPGRFGQN 213
+C + C CE ++G C LD M C +
Sbjct: 254 --REYDCKDMSDEVGCVNVTLCEGPNKFKCHSGECITLDKVCNMARDCRDWSDEPIKECG 311
Query: 214 CSQECQCRNGAECHPATGECSCQPGFTGSLCEERCPPGTHGPSCINRCRCQNGAICNPAN 273
++ G + + C + C +
Sbjct: 312 TNECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDTCSQLCVNLEGG 371
Query: 274 GQCLCAPGWMGSVCNVPCTPGMWGQGCTVPCECFNGASCHHVTGECQCEPGFKGQKCMDP 333
+C C G+ P T G N +T +
Sbjct: 372 YKCQCEEGF----QLDPHTKACKAVGSIAYLFFTNRHEVRKMTLDRSEYTSLIPNLRNVV 427
Query: 334 CPEGTWGKQCVHYCSCPVESMECSRIDGNCSCP 366
+ +++ + +++D
Sbjct: 428 ALDTEVASNRIYWSDLSQRMICSTQLDRAHGVS 460
>3t5o_A Complement component C6; macpf, MAC, membrane attack complex,
innate IMMU system, blood, membrane, cytolysin, immune
SYST; HET: NAG FUL FUC BGC MAN; 2.87A {Homo sapiens}
PDB: 4a5w_B* 4e0s_B*
Length = 913
Score = 39.1 bits (90), Expect = 0.007
Identities = 53/419 (12%), Positives = 84/419 (20%), Gaps = 36/419 (8%)
Query: 56 CMDPCPEGTWGKQCVHYCSCPVESMECSRIDGNCSCPPGFRGAKCKERTCPDGLYGEGCD 115
+D + ++ C+ P C
Sbjct: 469 IVDLVRNIPCAVTKRNNLRKALQEYAAKFDPCQCAPCPNNGRPTLSGTECLCVCQSGTYG 528
Query: 116 RTCECNVENTKLCVPVCTDECIRGTCIAPNTCKC----EVGFGGPTCN-IECPEGHYGPD 170
CE + K C T K E P C +
Sbjct: 529 ENCEKQSPDYKSNAVDGQWGCWSSWSTCDATYKRSRTRECNNPAPQRGGKRCEGEKRQEE 588
Query: 171 CKLACQCENGAGCDPNTGACDCLDGYMGTHCEEVCGPGRFGQNCSQECQCRNGAECHPAT 230
EN N + C +N +
Sbjct: 589 DCTFSIMENNGQPCINDDEEMKEVDLPEIEADSGCPQPVPPENGF--IRNEKQLYLVGED 646
Query: 231 GECSCQPGFTGSLCEE-RCPPGTHGPSCINRCRCQNGAICNPANGQCLCAPGWM---GSV 286
E SC GF + RC P C+ + + G
Sbjct: 647 VEISCLTGFETVGYQYFRCLPDGTWRQGDVECQRTECIKPVVQEVLTITPFQRLYRIGES 706
Query: 287 CNVPCTPGMWGQG----------------CTVPCECFNGASCHHVTGECQCEPGFKGQKC 330
+ C G G ++ CE + + G CQ G +C
Sbjct: 707 IELTCPKGFVVAGPSRYTCQGNSWTPPISNSLTCEK---DTLTKLKGHCQLGQKQSGSEC 763
Query: 331 MDPCPEGTWGKQCVHYCSCPVESMECSRI----DGNCSCPPGFRGAKCKERTCPDGLYGE 386
+ PE C +S + C + +C DG E
Sbjct: 764 ICMSPEEDCSHHSEDLCVFDTDSNDYFTSPACKFLAEKCLNNQQLHFLHIGSCQDGRQLE 823
Query: 387 GCDRTCECNVENTKLCHAVTGKCECGPGWDGLTCDRPCPITR--WGDNCSQHCNCKNDA 443
+ +TK C T C + + +C +
Sbjct: 824 WGLERTRLSSNSTKKESCGYDTCYDWEKCSASTSKCVCLLPPQCFKGGNQLYCVKMGSS 882
Score = 33.7 bits (76), Expect = 0.29
Identities = 47/401 (11%), Positives = 90/401 (22%), Gaps = 18/401 (4%)
Query: 183 CDPNTGACDCLDGYMGTHCEEVCGPGRFGQNCSQECQCRNGAECHPATGECSCQPGFTGS 242
C + GT C VC G +G+NC ++ G S +
Sbjct: 500 CQCAPCPNNGRPTLSGTECLCVCQSGTYGENCEKQSPDYKSNAVDGQWGCWSSWSTCDAT 559
Query: 243 LCEERCPPGTHGPSCINRCRCQNGAICNPANGQCLCAPGWMGSVCNVPCTPGMWGQGCTV 302
R + RC+ + + + +
Sbjct: 560 YKRSRTRECNNPAPQRGGKRCEGEKRQEEDCTFSIMENNGQPCINDDEEMKEVDLPEIEA 619
Query: 303 PCECFNGASCHHVTGECQCEPGFKGQKCMDPCPEGTWGKQCVHYCSCPVESMECSRIDGN 362
C + + + G+ C G + + + C
Sbjct: 620 DSGCPQPVPPENGFIRNEKQLYLVGEDVEISCLTG--------FETVGYQYFRCLPDGTW 671
Query: 363 CSCPPGFRGAKCKERTCPDGLYGEGCDRTCECNVENTKLC---HAVTGKCECGPGWDGLT 419
+ +C + + L R C V G + T
Sbjct: 672 RQGDVECQRTECIKPVVQEVLTITPFQRLYRIGESIELTCPKGFVVAGPSRYTCQGNSWT 731
Query: 420 CDRPCPITRWGDNCSQ---HCNCKNDALCFPRNGTNTYQYFFLQSLTLFTFLSLTHSGFS 476
+T D ++ HC + + S L F + ++ F+
Sbjct: 732 PPISNSLTCEKDTLTKLKGHCQLGQKQSGSECICMSPEEDCSHHSEDLCVFDTDSNDYFT 791
Query: 477 GRHCEKPCPQGSYGQDCSQTCLCSKEGSASCSPGSGQCVCRPGGAGQL--CDRPCSEGRY 534
C+ + Q + S + G + + C +
Sbjct: 792 SPACKFLAEKCLNNQQLHFLHIGSCQDGRQLEWGLERTRLSSNSTKKESCGYDTCYDWEK 851
Query: 535 GQNCTQECRCMNGAACNP--QDGTCLCPAGYYGPLCQKRCE 573
T +C C+ C C+ CE
Sbjct: 852 CSASTSKCVCLLPPQCFKGGNQLYCVKMGSSTSEKTLNICE 892
>2ygo_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling
pathway, WNT antagonist, MO cancer, glycosaminoglycan;
HET: MLY PCF NAG; 1.85A {Homo sapiens} PDB: 2ygp_A*
Length = 188
Score = 37.2 bits (85), Expect = 0.008
Identities = 19/98 (19%), Positives = 24/98 (24%), Gaps = 2/98 (2%)
Query: 63 GTWGKQCVHYCSCPVESMECSRIDGNCSCPPGFRGAKCKERTC-PDGLYGEGCDRTCECN 121
G V+ S + C G E G T +
Sbjct: 81 GIMADPTVNVPLLGTVPHXASVVQVGFPCLGXQDGVAAFEVDVIVMNSEGNTILXTPQNA 140
Query: 122 VENTKLCVPVCTDECI-RGTCIAPNTCKCEVGFGGPTC 158
+ C C G C C+C GF GP C
Sbjct: 141 IFFKTCQQAECPGGCRNGGFCNERRICECPDGFHGPHC 178
Score = 37.2 bits (85), Expect = 0.009
Identities = 17/92 (18%), Positives = 25/92 (27%), Gaps = 15/92 (16%)
Query: 479 HCEKPCPQGSYGQDCSQTCLCSKEGSASCSPGSGQCVCRPGGAGQLCDRPCSEGRYGQNC 538
PC G + + + G + + Q
Sbjct: 104 QVGFPCLGXQDGVAAFEVDVI--------------VMNSEGNTILXTPQNAIFFKTCQQA 149
Query: 539 TQECRCMNGAACNPQDGTCLCPAGYYGPLCQK 570
C NG CN C CP G++GP C+
Sbjct: 150 ECPGGCRNGGFCNE-RRICECPDGFHGPHCEG 180
Score = 34.5 bits (78), Expect = 0.070
Identities = 18/115 (15%), Positives = 20/115 (17%), Gaps = 19/115 (16%)
Query: 134 DECIRGTCIAPNTCKCEVGFGGPTCNIECPEGHYGPDC---KLACQCENGAGCDPNTGAC 190
T P C G + G
Sbjct: 81 GIMADPTVNVPLLGTVPHXASVVQVGFPCLGXQDGVAAFEVDVIVMNSEGNTILXTPQNA 140
Query: 191 DCLDGYMGTHCEEVCGPGRFGQNCSQECQCRNGAECHPATGECSCQPGFTGSLCE 245
C CRNG C+ C C GF G CE
Sbjct: 141 IFFKTCQQAECP---------------GGCRNGGFCN-ERRICECPDGFHGPHCE 179
Score = 31.8 bits (71), Expect = 0.59
Identities = 14/76 (18%), Positives = 19/76 (25%), Gaps = 2/76 (2%)
Query: 213 NCSQECQC-RNGAECHPATGECSCQPGFTGSLCEERCPPGTHGPSCINRCRCQNGAICNP 271
C ++G G T + C+NG CN
Sbjct: 104 QVGFPCLGXQDGVAAFEVDVIVMNSEGNTILXTPQNAIFFKTCQQAECPGGCRNGGFCNE 163
Query: 272 ANGQCLCAPGWMGSVC 287
C C G+ G C
Sbjct: 164 RR-ICECPDGFHGPHC 178
Score = 31.0 bits (69), Expect = 0.94
Identities = 16/118 (13%), Positives = 21/118 (17%), Gaps = 26/118 (22%)
Query: 213 NCSQECQCRNGAECHPATGECSCQPGFTGSLCEERCPPGTHGPSCINRCRCQNGAICNPA 272
+ C G E G
Sbjct: 87 TVNVPLLGTVPHXASVVQVGFPCLGXQDGVAAFE----------VDVIVMNSEGNTILXT 136
Query: 273 NGQCLCAPGWMGSVCNVPCTPGMWGQGCTVPCECFNGASCHHVTGECQCEPGFKGQKC 330
+ + C P C NG C+ C+C GF G C
Sbjct: 137 PQNAIFFKTCQQAEC---------------PGGCRNGGFCNE-RRICECPDGFHGPHC 178
Score = 31.0 bits (69), Expect = 1.00
Identities = 14/71 (19%), Positives = 21/71 (29%), Gaps = 4/71 (5%)
Query: 755 CRCQNGAICNPANGQCLCAPGWMGSVCNVPCTPGMWGQGCTV---PCECFNGASCHHVTG 811
C A + G+ ++ + C P C NG C+
Sbjct: 107 FPCLGXQDGVAAFEVDVIVMNSEGNTILXTPQNAIFFKTCQQAECPGGCRNGGFCNE-RR 165
Query: 812 ECQCEPGFKGQ 822
C+C GF G
Sbjct: 166 ICECPDGFHGP 176
Score = 30.3 bits (67), Expect = 1.6
Identities = 14/91 (15%), Positives = 18/91 (19%), Gaps = 21/91 (23%)
Query: 528 PCSEGRYGQNCTQ---ECRCMNGAACNPQDGTCLCPAGYYGPLCQKRCEFMTYGRNCAQA 584
PC + G + G + C C
Sbjct: 108 PCLGXQDGVAAFEVDVIVMNSEGNTILXTPQNAIFFKTCQQAECPGGC------------ 155
Query: 585 CTCFTENSQGCDIVTGKCICRPGFKGHRCET 615
+ G C C GF G CE
Sbjct: 156 ------RNGGFCNERRICECPDGFHGPHCEG 180
Score = 29.9 bits (66), Expect = 2.6
Identities = 11/83 (13%), Positives = 16/83 (19%), Gaps = 1/83 (1%)
Query: 298 QGCTVPCECFNGASCHHVTGECQCEPGFKGQKCMDPCPEGTW-GKQCVHYCSCPVESMEC 356
V C +G + + C +
Sbjct: 101 SVVQVGFPCLGXQDGVAAFEVDVIVMNSEGNTILXTPQNAIFFKTCQQAECPGGCRNGGF 160
Query: 357 SRIDGNCSCPPGFRGAKCKERTC 379
C CP GF G C+
Sbjct: 161 CNERRICECPDGFHGPHCEGTKH 183
Score = 29.5 bits (65), Expect = 3.1
Identities = 12/37 (32%), Positives = 13/37 (35%), Gaps = 1/37 (2%)
Query: 2 ECVPVCTDECI-RGTCIAPNTCKCEVGFGGPTCNIAK 37
C C G C C+C GF GP C K
Sbjct: 146 CQQAECPGGCRNGGFCNERRICECPDGFHGPHCEGTK 182
>2c4f_L Coagulation factor VII precursor; blood coagulation, serine
protease, EGF, EGF-like domain, GLA, receptor enzyme,
glycoprotein, hydrolase, protease; HET: CGU GLC FUC NAG
GIL; 1.72A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1
g.32.1.1 PDB: 1w2k_L* 1w0y_L* 1z6j_L* 2b8o_L* 2aer_L*
2ec9_L* 2fir_L* 2a2q_L* 1fak_L* 1o5d_L* 1wqv_L* 1wss_L*
1wtg_L* 1wun_L* 1wv7_L* 1dan_L* 2aei_L* 2b7d_L* 2f9b_L*
2flb_L* ...
Length = 142
Score = 35.8 bits (83), Expect = 0.015
Identities = 26/147 (17%), Positives = 37/147 (25%), Gaps = 34/147 (23%)
Query: 131 VCTDECIRGTCIAPNTCKCEVGFGGPTCNIECPEGHYGPDCKLACQCENGAGC--DPNTG 188
C+ E R E + + P C+NG C +
Sbjct: 21 QCSFEEAREIF-----KDAERTKLFWISYSDGDQCASSP-------CQNGGSCKDQLQSY 68
Query: 189 ACDCLDGYMGTHCEEVCGPGRFGQNCSQECQCRNGAECHPATGE------CSCQPGFTGS 242
C CL + G +CE + C NG + C C G++
Sbjct: 69 ICFCLPAFEGRNCETHK-------DDQLICVNENGGCEQYCSDHTGTKRSCRCHEGYSLL 121
Query: 243 LCEERCPPGTHGPSCINRCRCQNGAIC 269
C P P C I
Sbjct: 122 ADGVSCTPTVEYP-------CGKIPIL 141
Score = 34.6 bits (80), Expect = 0.035
Identities = 23/105 (21%), Positives = 30/105 (28%), Gaps = 21/105 (20%)
Query: 203 EVCGPGRFGQNCSQEC------QCRNGAECHPATG--ECSCQPGFTGSLCEERCPPGTHG 254
+ + + C+NG C C C P F G CE
Sbjct: 32 KDAERTKLFWISYSDGDQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDD---- 87
Query: 255 PSCINRCRCQNG---AICNPANG---QCLCAPGWMGSVCNVPCTP 293
C +NG C+ G C C G+ V CTP
Sbjct: 88 ---QLICVNENGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSCTP 129
Score = 33.1 bits (76), Expect = 0.15
Identities = 16/97 (16%), Positives = 25/97 (25%), Gaps = 11/97 (11%)
Query: 529 CSEGRYGQNCTQECR------CMNGAACNPQDG--TCLCPAGYYGPLCQKRCEFMTYGRN 580
+ + C NG +C Q C C + G C+ + N
Sbjct: 34 AERTKLFWISYSDGDQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLICVN 93
Query: 581 CAQACTCFTENSQGCDIVTGKCICRPGFKGHRCETQC 617
C + + G C C G+ C
Sbjct: 94 ENGGCEQYCSDHTGTKRS---CRCHEGYSLLADGVSC 127
>1tpg_A T-plasminogen activator F1-G; plasminogen activation; NMR {Homo
sapiens} SCOP: g.3.11.1 g.27.1.1 PDB: 1tpm_A 1tpn_A
Length = 91
Score = 34.0 bits (78), Expect = 0.024
Identities = 20/60 (33%), Positives = 23/60 (38%), Gaps = 12/60 (20%)
Query: 190 CDCLDGYMGTHCEEVCGPGRFGQNCSQECQCRNGAECHPATGE----CSCQPGFTGSLCE 245
C C G H V ++CS E +C NG C A C C GF G CE
Sbjct: 34 CWCNSGRAQCHSVPV-------KSCS-EPRCFNGGTCQQALYFSDFVCQCPEGFAGKSCE 85
Score = 27.4 bits (61), Expect = 5.7
Identities = 18/61 (29%), Positives = 20/61 (32%), Gaps = 13/61 (21%)
Query: 601 KCICRPGFKGHRCETQCSNPNTYGEDCSLDCGCNNGGTCNQLDGG----CNCGRGYQGKL 656
C C G CS + C NGGTC Q C C G+ GK
Sbjct: 33 YCWCNSGRAQ----CHSVPVK----SCS-EPRCFNGGTCQQALYFSDFVCQCPEGFAGKS 83
Query: 657 C 657
C
Sbjct: 84 C 84
Score = 27.1 bits (60), Expect = 7.4
Identities = 16/62 (25%), Positives = 18/62 (29%), Gaps = 12/62 (19%)
Query: 232 ECSCQPGFTGSLCEERCPPGTHGPSCINRCRCQNGAICNPANG----QCLCAPGWMGSVC 287
C C G SC RC NG C A C C G+ G C
Sbjct: 33 YCWCNSGRAQCHS-------VPVKSCS-EPRCFNGGTCQQALYFSDFVCQCPEGFAGKSC 84
Query: 288 NV 289
+
Sbjct: 85 EI 86
>2e26_A Reelin, reeler protein; signaling protein; HET: NAG BMA; 2.00A {Mus
musculus} PDB: 3a7q_A*
Length = 725
Score = 36.9 bits (84), Expect = 0.029
Identities = 32/201 (15%), Positives = 44/201 (21%), Gaps = 34/201 (16%)
Query: 220 CRNGAECHPATGECSCQPGFTGSLCEERCPPGTHGPSCINRCRCQNGAICNPANGQCLCA 279
C C+ E S G + C P S + R N L
Sbjct: 442 CSVTDSCYAIELEYSVDLGLSWHPLVRDCLPTNVECSRYHLQRILVSDTFNKWTRITLPL 501
Query: 280 PGWMGSVCNVPCTPGMWGQGCTVPCECFNGASCHHVTGECQCEPGFKGQKCMDPCPEGTW 339
P S T W Q P + + +V C
Sbjct: 502 P----SYTRSQATRFRWHQPA--PFDKQQTWAIDNVYIGDGCLD---------------- 539
Query: 340 GKQCVHYCSCPVESMECSRIDGNCSCPPGFRGAKCKERTCPDGLYGEGCDRTCECNVENT 399
C + C + G+C C + G C E + N
Sbjct: 540 --MCSGHGRC---------VQGSCVCDEQWGGLYCDEPETSLPTQLKDNFNRAPSNQNWL 588
Query: 400 KLCHAVTGKCECGPGWDGLTC 420
+ CG GL
Sbjct: 589 TVSGGKLS-TVCGAVASGLAL 608
Score = 34.6 bits (78), Expect = 0.14
Identities = 16/87 (18%), Positives = 25/87 (28%), Gaps = 1/87 (1%)
Query: 572 CEFMTYGRNCAQACTCFTENSQGCDIVTGKCICRPGFKGHRCE-TQCSNPNTYGEDCSLD 630
+ N C S V G C+C + G C+ + S P ++ +
Sbjct: 522 KQQTWAIDNVYIGDGCLDMCSGHGRCVQGSCVCDEQWGGLYCDEPETSLPTQLKDNFNRA 581
Query: 631 CGCNNGGTCNQLDGGCNCGRGYQGKLC 657
N T + CG G
Sbjct: 582 PSNQNWLTVSGGKLSTVCGAVASGLAL 608
Score = 33.1 bits (74), Expect = 0.42
Identities = 16/101 (15%), Positives = 24/101 (23%), Gaps = 2/101 (1%)
Query: 205 CGPGRFGQNCSQECQCRNGAECHPA--TGECSCQPGFTGSLCEERCPPGTHGPSCINRCR 262
N C + H G C C + G C+E
Sbjct: 522 KQQTWAIDNVYIGDGCLDMCSGHGRCVQGSCVCDEQWGGLYCDEPETSLPTQLKDNFNRA 581
Query: 263 CQNGAICNPANGQCLCAPGWMGSVCNVPCTPGMWGQGCTVP 303
N + G+ G + S + + G TV
Sbjct: 582 PSNQNWLTVSGGKLSTVCGAVASGLALHFSGGCSRLLVTVD 622
Score = 33.1 bits (74), Expect = 0.50
Identities = 26/172 (15%), Positives = 39/172 (22%), Gaps = 16/172 (9%)
Query: 57 MDPCPEGTWGKQCVHYCSCPVESMECSRIDGNCSCPPGFRGAKCKERTCPDGLYGEGCDR 116
+ C H V P R + R + +
Sbjct: 467 VRDCLPTNVECSRYHLQRILVSDTFNKWTRITLPLPSYTRSQATRFRWHQPAPFDK-QQT 525
Query: 117 TCECNVENTKLCVPVCTDECIRGTCIAPNTCKCEVGFGGPTCNIECPEGHYGPDCKLACQ 176
NV C+ +C+ G C+ +C C+ +GG C +
Sbjct: 526 WAIDNVYIGDGCLDMCSG---HGRCVQ-GSCVCDEQWGGLYC-----DEPETSLPTQLKD 576
Query: 177 CENGAGCDPNTGACDCLDGYMGTHCEEVCGPGRFGQNCSQECQCRNGAECHP 228
N A + N G VCG G C
Sbjct: 577 NFNRAPSNQNWLTV------SGGKLSTVCGAVASGLALHFSGGCSRLLVTVD 622
Score = 32.3 bits (72), Expect = 0.81
Identities = 13/73 (17%), Positives = 19/73 (26%)
Query: 2 ECVPVCTDECIRGTCIAPNTCKCEVGFGGPTCNIAKDAKTKPTDTYTFRLMFPQCMDPCP 61
C D C +C C+ +GG C+ + + R Q
Sbjct: 532 YIGDGCLDMCSGHGRCVQGSCVCDEQWGGLYCDEPETSLPTQLKDNFNRAPSNQNWLTVS 591
Query: 62 EGTWGKQCVHYCS 74
G C S
Sbjct: 592 GGKLSTVCGAVAS 604
Score = 30.4 bits (67), Expect = 3.1
Identities = 16/50 (32%), Positives = 21/50 (42%), Gaps = 3/50 (6%)
Query: 121 NVENTKLCVPVCTDECIRGTCIAPNTCKCEVGFGGPTCNIECPEGHYGPD 170
NV C +C G+CI C C+ G+ GPTC I + D
Sbjct: 181 NVYIGPQCEEMCYG---HGSCINGTKCICDPGYSGPTCKISTKNPDFLKD 227
Score = 29.6 bits (65), Expect = 5.1
Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Query: 4 VPVCTDECI-RGTCIAPNTCKCEVGFGGPTCNIAKDAKTKPTDTY 47
P C + C G+CI C C+ G+ GPTC I+ D +
Sbjct: 185 GPQCEEMCYGHGSCINGTKCICDPGYSGPTCKISTKNPDFLKDDF 229
>1yo8_A Thrombospondin-2; EGF, Ca(2+)-binding domains, lectin domain,
disulfide, cell; HET: NAG MAN; 2.60A {Homo sapiens} PDB:
2rhp_A*
Length = 634
Score = 36.5 bits (84), Expect = 0.041
Identities = 40/260 (15%), Positives = 60/260 (23%), Gaps = 23/260 (8%)
Query: 133 TDECIRGTCIAPNTCKCEVGFGGPTCNIECPEGHY--GPDCKLACQCENGA-GCDPNTGA 189
D C+ C C G +C CP G G C+ +C C +
Sbjct: 3 PDGCLSNPCFPGAQC-SSFPDGSWSC-GFCPVGFLGNGTHCEDLDECALVPDICFSTSKV 60
Query: 190 CDCLDGYMGTHCEEVCGPGRFGQNCSQECQCRNGAECHPATGECSCQPGFTGSLCEERCP 249
C++ G HC C + G +CE P
Sbjct: 61 PRCVNTQPGFHCL----------------PCPPRYRGNQPVGVGLEAAKTEKQVCEPENP 104
Query: 250 PGTHGPSCINRCRCQNGAICNPANGQCLCAPGWMGSVCNVPCTPGMWGQGCTVPCECFNG 309
+C C + +C C G+ G + C G
Sbjct: 105 CKDKTHNCHKHAECIYLGHFSDPMYKCECQTGYAG--DGLICGEDSDLDGWPNLNLVCAT 162
Query: 310 ASCHHVTGECQCEPGFKGQKCMDPCPEGTWGKQCVHYCSCPVESMECSRIDGNCSCPPGF 369
+ +H + GQ+ D G E C +
Sbjct: 163 NATYHCIKDNCPHLPNSGQEDFDKDGIGDACDDDDDNDGVTDEKDNCQLLFNPRQADYDK 222
Query: 370 RGAKCKERTCPDGLYGEGCD 389
+ CP D
Sbjct: 223 DEVGDRCDNCPYVHNPAQID 242
>1gl4_A Nidogen-1, entactin; immunoglobulin-like domain, extracellular
matrix; HET: EPE; 2.0A {Mus musculus} SCOP: d.22.1.2
g.3.11.5 PDB: 1h4u_A
Length = 285
Score = 35.1 bits (80), Expect = 0.064
Identities = 15/72 (20%), Positives = 19/72 (26%), Gaps = 9/72 (12%)
Query: 215 SQEC-----QCRNGAECHPATG--ECSCQPGFTGS--LCEERCPPGTHGPSCINRCRCQN 265
Q C QC AEC C C +TG+ C P R +
Sbjct: 5 QQTCANNRHQCSVHAECRDYATGFCCRCVANYTGNGRQCVAEGSPQRVNGKVKGRIFVGS 64
Query: 266 GAICNPANGQCL 277
+ L
Sbjct: 65 SQVPVVFENTDL 76
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G,
beta-propeller, protein binding; 3.30A {Rattus
norvegicus}
Length = 386
Score = 34.0 bits (77), Expect = 0.20
Identities = 20/135 (14%), Positives = 31/135 (22%), Gaps = 11/135 (8%)
Query: 205 CGPGRFGQNCSQECQCRNGAECHPATGECSCQPGFTGSLCEERCPPGTHGPSCINRCRCQ 264
C G C+Q+CQ +C+C G+ + C C C
Sbjct: 6 CNVNNGG--CAQKCQMI------RGAVQCTCHTGYRLTEDGRTCQ---DVNECAEEGYCS 54
Query: 265 NGAICNPANGQCLCAPGWMGSVCNVPCTPGMWGQGCTVPCECFNGASCHHVTGECQCEPG 324
G + QC C G+ C H +
Sbjct: 55 QGCTNSEGAFQCWCEAGYELRPDRRSCKALGPEPVLLFANRIDIRQVLPHRSEYTLLLNN 114
Query: 325 FKGQKCMDPCPEGTW 339
+ +D
Sbjct: 115 LENAIALDFHHRREL 129
Score = 32.1 bits (72), Expect = 0.68
Identities = 18/122 (14%), Positives = 29/122 (23%), Gaps = 3/122 (2%)
Query: 175 CQCENGAGCDPNTGACDCLDGYMGTHCEEVCGPGRFGQNCSQECQCRNGAECHPATGECS 234
C C C GY T C + C++E C G +C
Sbjct: 11 GGCAQKCQMIRGAVQCTCHTGYRLTEDGRTC---QDVNECAEEGYCSQGCTNSEGAFQCW 67
Query: 235 CQPGFTGSLCEERCPPGTHGPSCINRCRCQNGAICNPANGQCLCAPGWMGSVCNVPCTPG 294
C+ G+ C P + R + + L ++
Sbjct: 68 CEAGYELRPDRRSCKALGPEPVLLFANRIDIRQVLPHRSEYTLLLNNLENAIALDFHHRR 127
Query: 295 MW 296
Sbjct: 128 EL 129
Score = 31.7 bits (71), Expect = 0.98
Identities = 22/137 (16%), Positives = 35/137 (25%), Gaps = 13/137 (9%)
Query: 303 PCECFNG---ASCHHVTG--ECQCEPGFKGQKCMDPCPEGTWGKQCVHYCSCPVESMECS 357
C NG C + G +C C G++ + C + +C C S C+
Sbjct: 5 NCNVNNGGCAQKCQMIRGAVQCTCHTGYRLTEDGRTCQDV---NECAEEGYC---SQGCT 58
Query: 358 RIDGN--CSCPPGFRGAKCKERTCPDGLYGEGCDRTCECNVENTKLCHAVTGKCECGPGW 415
+G C C G+ + G + T
Sbjct: 59 NSEGAFQCWCEAGYELRPDRRSCKALGPEPVLLFANRIDIRQVLPHRSEYTLLLNNLENA 118
Query: 416 DGLTCDRPCPITRWGDN 432
L + W D
Sbjct: 119 IALDFHHRRELVFWSDV 135
Score = 29.4 bits (65), Expect = 5.9
Identities = 24/141 (17%), Positives = 39/141 (27%), Gaps = 17/141 (12%)
Query: 528 PCSEGRYGQNCTQECRCMNGAACNPQDGTCLCPAGYYGPLCQKRCEFMTYGRNCAQACTC 587
C+ G C Q+C+ + GA C C GY + C+ + CA+ C
Sbjct: 5 NCNVNNGG--CAQKCQMIRGAV------QCTCHTGYRLTEDGRTCQDVNE---CAEEGYC 53
Query: 588 FTENSQGCDIVTG--KCICRPGFKGHRCETQCSNPNTYGEDCSLDCGCNNGGTCNQLDGG 645
SQGC G +C C G++ C + ++ +
Sbjct: 54 ----SQGCTNSEGAFQCWCEAGYELRPDRRSCKALGPEPVLLFANRIDIRQVLPHRSEYT 109
Query: 646 CNCGRGYQGKLCTAPCPEGQY 666
Sbjct: 110 LLLNNLENAIALDFHHRRELV 130
Score = 29.0 bits (64), Expect = 7.6
Identities = 19/136 (13%), Positives = 34/136 (25%), Gaps = 5/136 (3%)
Query: 258 INRCRCQNGAICNPANGQCLCAPGWMGSVCNVPCTPGMWGQGCTVPCECFNGASCHHVTG 317
+N C QC C G+ + C C C G +
Sbjct: 8 VNNGGCAQKCQMIRGAVQCTCHTGYRLTEDGRTCQDVN---ECAEEGYCSQGCTNSEGAF 64
Query: 318 ECQCEPGFKGQKCMDPCPEGTWGKQCVHYCSCPVESMECSRIDGNCSCPPGFRGAKCKER 377
+C CE G++ + D G + V + ++ + +
Sbjct: 65 QCWCEAGYELR--PDRRSCKALGPEPVLLFANRIDIRQVLPHRSEYTLLLNNLENAIALD 122
Query: 378 TCPDGLYGEGCDRTCE 393
D T +
Sbjct: 123 FHHRRELVFWSDVTLD 138
>3s2k_C Dickkopf-related protein 1; WNT CO-receptor, beta-propeller, EGF
domain, WNT signaling, inhibitor, glycosylation,
signaling protein; HET: NAG FUC; 2.80A {Homo sapiens}
PDB: 3s8v_X
Length = 97
Score = 31.7 bits (71), Expect = 0.21
Identities = 19/82 (23%), Positives = 27/82 (32%), Gaps = 1/82 (1%)
Query: 207 PGRFGQNCSQECQCRNGAECHPATGECSCQP-GFTGSLCEERCPPGTHGPSCINRCRCQN 265
G+ G C + C +G C C+P G +C + G+HG RC C
Sbjct: 8 KGQEGSVCLRSSDCASGLCCARHFWSKICKPVLKEGQVCTKHRRKGSHGLEIFQRCYCGE 67
Query: 266 GAICNPANGQCLCAPGWMGSVC 287
G C + C
Sbjct: 68 GLSCRIQKDHHQASNSSRLHTC 89
Score = 27.8 bits (61), Expect = 4.5
Identities = 20/87 (22%), Positives = 33/87 (37%), Gaps = 3/87 (3%)
Query: 485 PQGSYGQDCSQTCLCSKEGSASCSPGSGQCVCRP-GGAGQLCDRPCSEGRYGQNCTQECR 543
+G G C ++ C+ C+ +C+P GQ+C + +G +G Q C
Sbjct: 7 TKGQEGSVCLRSSDCASGLC--CARHFWSKICKPVLKEGQVCTKHRRKGSHGLEIFQRCY 64
Query: 544 CMNGAACNPQDGTCLCPAGYYGPLCQK 570
C G +C Q CQ+
Sbjct: 65 CGEGLSCRIQKDHHQASNSSRLHTCQR 91
>1yy9_A Epidermal growth factor receptor; cell surface receptor, tyrosine
kinase, glycoprotein, antigen:antibody complex, FAB
fragment, antitumor, drug; HET: NDG NAG BMA MAN; 2.60A
{Homo sapiens} SCOP: c.10.2.5 c.10.2.5 g.3.9.1 g.3.9.1
PDB: 3qwq_A* 1nql_A* 3b2v_A* 1ivo_A* 3njp_A*
Length = 624
Score = 34.2 bits (77), Expect = 0.21
Identities = 50/457 (10%), Positives = 92/457 (20%), Gaps = 15/457 (3%)
Query: 113 GCDRTCECNVENTKLCVPVCTDECIRGTCIAPNTCKCEVGFGGPTCNIECPEGHYGPDCK 172
+ +N C C G+C C C +C G
Sbjct: 147 DFLSNMSMDFQNHLGSCQKCDPSCPNGSCWGAGEENC-QKLTKIICAQQCSGRCRGKSPS 205
Query: 173 LAC--QCENGAGCDPNTGACDCLDGYMGTHCEEVCGPGRFGQNCSQECQCRNGAECHPAT 230
C QC G + C C++ C P + + +
Sbjct: 206 DCCHNQCAAGCTGPRESDCLVCRKFRDEATCKDTCPPLMLYNPTTYQMDVNPEGKYSFGA 265
Query: 231 GECSCQPG----FTGSLCEERCPPGTHGPSCINRCRCQNGAICNPANGQCLCAPGWMGSV 286
P C C ++ +C+ + + S+
Sbjct: 266 TCVKKCPRNYVVTDHGSCVRACGADSYEMEEDGVRKCKKCEGPCRKVCNGIGIGEFKDSL 325
Query: 287 CNVPCTPGMWGQGCTVPCECFNGASCHHVTGECQCEPGFKGQKCMDPCPEGTWGKQCVHY 346
+ ++ + P + + + G +
Sbjct: 326 SINATNIKHFKNCTSISGDLHILPVAFRGDSFTHTPPLDPQELDILKTVKEITGFLLIQA 385
Query: 347 CSCPVESMECSR----IDGNCSCPPGFRGAKCKERTCPDGLYGEGCDRTCECNVENTKLC 402
+ I G F A GL + + K
Sbjct: 386 WPENRTDLHAFENLEIIRGRTKQHGQFSLAVVSLNITSLGLRSLKEISDGDVIISGNKNL 445
Query: 403 HAVTGKCECGPGWDGLTCDRPCPITRWGDNCSQHCNCKNDALCFPRNGTNTYQYFFLQSL 462
+ + C G +++
Sbjct: 446 CYANTINWKKLFGTSGQKTKIISNRGENKCKATGQVCHALCSPEGCWGPEPRDCVSCRNV 505
Query: 463 TLFTFLSLTHSGFSGRHCEKPCPQGSYGQDCSQTCLCSKEGSASCSPGSGQCV-CRPGGA 521
+ + + S C CL G C+ C
Sbjct: 506 SRGR--ECVDKCKLLEGEPREFVENSECIQCHPECLPQAMNITCTGRGPDNCIQCAHYID 563
Query: 522 GQLCDRPCSEGRYGQNCTQECRCMN-GAACNPQDGTC 557
G C + C G G+N T + + G C+ C
Sbjct: 564 GPHCVKTCPAGVMGENNTLVWKYADAGHVCHLCHPNC 600
Score = 33.1 bits (74), Expect = 0.43
Identities = 56/451 (12%), Positives = 100/451 (22%), Gaps = 38/451 (8%)
Query: 5 PVCTDECIRGTCIAPNTCKCEVGFGGPTCNIAKDAKTKPTDTYTFRLMFPQCMDPCPEGT 64
C C G+C C +L C C
Sbjct: 164 QKCDPSCPNGSCWGAGEENC------------------------QKLTKIICAQQCSGRC 199
Query: 65 WGKQCVHYCSCPVESMECSRIDGNC-SCPPGFRGAKCKERTCPDGLYGEGCDRTCECNVE 123
GK C + + +C C A CK+ TCP + + N E
Sbjct: 200 RGKSPSDCCHNQCAAGCTGPRESDCLVCRKFRDEATCKD-TCPPLMLYNPTTYQMDVNPE 258
Query: 124 NTKLCVPVCTDECIRGTCIAPNTCKCEVGFGGPTCNIECPEGHYGPDCK--LACQCENGA 181
C +C R + + E G
Sbjct: 259 GKYSFGATCVKKCPRNYVVTDHGSCVRACGADSYEMEEDGVRKCKKCEGPCRKVCNGIGI 318
Query: 182 GCDPNTGACDCLDGYMGTHCEEVCGPGRFGQNCSQECQCRNGAECHPATGE-CSCQPGFT 240
G ++ + + + +C + G + + P + T
Sbjct: 319 GEFKDSLSINATNIKHFKNCTSISGDLHILPVAFRGDSFTHTPPLDPQELDILKTVKEIT 378
Query: 241 GSLCEERCPPGTHGPSCINRCRCQNGAICNPANGQCLCAPGWMGSVCNVPCTPGMWGQGC 300
G L + P G + S+ G
Sbjct: 379 GFLLIQAWPENRTDLHAFENLEIIRGRTKQHGQFSLAVVSLNITSLGLRSLKEISDGDVI 438
Query: 301 TVPCECFNGASCHH---VTGECQCEPGFKGQKCMDPCPEGTWGKQCVHYCSC-----PVE 352
+ A+ + + G + + + C + P +
Sbjct: 439 ISGNKNLCYANTINWKKLFGTSGQKTKIISNRGENKCKATGQVCHALCSPEGCWGPEPRD 498
Query: 353 SMECSRIDGNCSCPPGFRGAKCKERTCPDGLYGEGCDRTCECNVENTKLCHAVTGKC-EC 411
+ C + C + + + R + C C N C +C
Sbjct: 499 CVSCRNVSRGRECVDKCKLLEGEPREFVENSECIQCHPECLPQAMNITCTGRGPDNCIQC 558
Query: 412 GPGWDGLTCDRPCPITRWGDNCSQHCNCKND 442
DG C + CP G+N + +
Sbjct: 559 AHYIDGPHCVKTCPAGVMGENNTLVWKYADA 589
Score = 30.8 bits (68), Expect = 2.3
Identities = 52/425 (12%), Positives = 82/425 (19%), Gaps = 15/425 (3%)
Query: 233 CSCQPGFTGSLCEERCPPGTHGPSCINRCRCQNGAICN-PANGQCL-CAPGWMGSVCNVP 290
T +C ++C G S + C Q A C P CL C + C
Sbjct: 180 EENCQKLTKIICAQQCSGRCRGKSPSDCCHNQCAAGCTGPRESDCLVCRKFRDEATCKDT 239
Query: 291 CTPGMW---GQGCTVPCECFNGASCHHVTGECQ-CEPGFKGQKCMDPCPEGTWGKQCVHY 346
C P M + +C C+ C ++ +
Sbjct: 240 CPPLMLYNPTTYQMDVNPEGKYSFGATCVKKCPRNYVVTDHGSCVRACGADSYEMEEDGV 299
Query: 347 CSCPVESMECSRIDGNCSCPPGFRGAKCKERTCPDGLYGEGCDRTCECNVENTKLCHAVT 406
C C ++ +
Sbjct: 300 RKCKKCEGPCRKVCNGIGIGEFKDSLSINATNIKHFKNCTSISGDLHILPVAFRGDSFTH 359
Query: 407 GKCECGPGWDGLTCDRPCPITRWGDNCSQHCNCKNDALCFPRNGTNTYQYFFLQSLTLFT 466
D L + G Q L N
Sbjct: 360 TPPLDPQELDILKTVKEIT----GFLLIQAWPENRTDLHAFENLEIIRGRTKQHGQFSLA 415
Query: 467 FLSLTHSGFSGRHCEKPCPQGSYGQDCSQTCLCSKEGSASCSPGSGQCVC----RPGGAG 522
+SL + R ++ C + SGQ R
Sbjct: 416 VVSLNITSLGLRSLKEISDGDVIISGNKNLCYANTINWKKLFGTSGQKTKIISNRGENKC 475
Query: 523 QLCDRPCSEGRYGQNCTQECRCMNGAACNPQDGTCLCPAGYYGPLCQKRCEFMTYGRNCA 582
+ + C + C + N G + + C
Sbjct: 476 KATGQVCHALCSPEGCWGPEPRDCVSCRNVSRGRECVDKCKLLEGEPREFVENSECIQCH 535
Query: 583 QACTCFTENSQGCDIVTGKCI-CRPGFKGHRCETQCSNPNTYGEDCSLDCGCNNGGTCNQ 641
C N CI C G C C + + + G C+
Sbjct: 536 PECLPQAMNITCTGRGPDNCIQCAHYIDGPHCVKTCPAGVMGENNTLVWKYADAGHVCHL 595
Query: 642 LDGGC 646
C
Sbjct: 596 CHPNC 600
>1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB
domain, disease mutation, extracellular matrix,
polymorphism, cbegf domain; 1.35A {Homo sapiens} SCOP:
g.3.11.1 g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A
Length = 162
Score = 32.7 bits (75), Expect = 0.22
Identities = 17/107 (15%), Positives = 25/107 (23%), Gaps = 13/107 (12%)
Query: 556 TCLCPAGYYGPLCQKRCEFMTYGRNCAQACTCFTENSQGCDIVTGKCICRPGFKGHRCET 615
C CP + + C R+ G C G +
Sbjct: 25 ICDCPPDFELNPTRVGCVDT---RSGNCYLDIRPRGDNG----DTACSNEIGVGVSKASC 77
Query: 616 QCSNPNTYGEDCSLDCGCNNG-GTCNQLDGGCNCGRGYQGKLCTAPC 661
CS +G C + N C G G++ T
Sbjct: 78 CCSLGKAWGTPCEMCPAVNTSEYKIL-----CPGGEGFRPNPITVIL 119
Score = 31.2 bits (71), Expect = 0.78
Identities = 19/105 (18%), Positives = 24/105 (22%), Gaps = 14/105 (13%)
Query: 233 CSCQPGFTGSLCEERCPPGTHGPSCINRCRCQNGAICNPANG--QCLCAPGWMGSVCNVP 290
C C P F + C C NG C G S +
Sbjct: 26 CDCPPDFELNPTRVGCVD-------TRSGNCYLDIRPRGDNGDTACSNEIGVGVSKASCC 78
Query: 291 CTPG-MWGQGCTVPCECFNGASCHHVTGECQCEPGFKGQKCMDPC 334
C+ G WG C + C GF+
Sbjct: 79 CSLGKAWGTPCEMCPAVNTSEYKIL----CPGGEGFRPNPITVIL 119
Score = 30.8 bits (70), Expect = 0.90
Identities = 27/151 (17%), Positives = 38/151 (25%), Gaps = 20/151 (13%)
Query: 508 SPGSGQCVCRPGGAGQLCDRPCSEGRYGQNCTQECRCMNGAACNPQDG--TCLCPAGYYG 565
+PGS C C P C + T+ C +G C G
Sbjct: 20 TPGSYICDCPPDFELNPTRVGCVD-------TRSGNCYLDIRPRGDNGDTACSNEIGVGV 72
Query: 566 PLCQKRCEFMTYGRNCAQACTCFTENSQGCDIVTGKCICRPGFKGHRCETQCSNPNTYGE 625
C + C + C GF+ + + +
Sbjct: 73 SKASCCCSLGKAWGTPCEMCPAVNTSEYKI-----LCPGGEGFRPNPITVILEDID---- 123
Query: 626 DCSLDCGCNNGGTCNQLDGG--CNCGRGYQG 654
+C G GG C G C C GY
Sbjct: 124 ECQELPGLCQGGKCINTFGSFQCRCPTGYYL 154
Score = 27.7 bits (62), Expect = 9.2
Identities = 16/83 (19%), Positives = 18/83 (21%), Gaps = 13/83 (15%)
Query: 362 NCSCPPGFRGAKCKERTCPDGLYGEGCDRTCECNVENTKLCHAVTG--KCECGPGWDGLT 419
C CPP F GC T N G C G
Sbjct: 25 ICDCPPDFELNPT----------RVGCVDTRSGNCYLDIRPRGDNGDTACSNEIGVGVSK 74
Query: 420 CDRPCPITR-WGDNCSQHCNCKN 441
C + + WG C
Sbjct: 75 ASCCCSLGKAWGTPCEMCPAVNT 97
>2ddb_A Pseudecin, channel blocker; crisp, snake venom, CNG channel, toxin;
1.90A {Pseudechis porphyriacus} PDB: 2epf_A 2dda_A
Length = 210
Score = 33.0 bits (75), Expect = 0.27
Identities = 11/47 (23%), Positives = 13/47 (27%), Gaps = 1/47 (2%)
Query: 247 RCPPGTHGPSCINRCRCQNGAI-CNPANGQCLCAPGWMGSVCNVPCT 292
CP C N C N C + C W+ C C
Sbjct: 158 DCPSACVNRLCTNPCNYNNDFSNCKSLAKKSKCQTEWIKKKCPASCF 204
Score = 33.0 bits (75), Expect = 0.27
Identities = 11/47 (23%), Positives = 13/47 (27%), Gaps = 1/47 (2%)
Query: 741 RCPPGTHGPSCINRCRCQNGAI-CNPANGQCLCAPGWMGSVCNVPCT 786
CP C N C N C + C W+ C C
Sbjct: 158 DCPSACVNRLCTNPCNYNNDFSNCKSLAKKSKCQTEWIKKKCPASCF 204
Score = 29.5 bits (66), Expect = 3.2
Identities = 12/54 (22%), Positives = 18/54 (33%), Gaps = 1/54 (1%)
Query: 322 EPGFKGQKCMDPCPEGTWGKQCVHYCSCPVESMECSRIDGNCSCPPGFRGAKCK 375
P G C D CP + C + C+ + C + C + KC
Sbjct: 148 TPYKSGPPCAD-CPSACVNRLCTNPCNYNNDFSNCKSLAKKSKCQTEWIKKKCP 200
Score = 29.1 bits (65), Expect = 4.4
Identities = 13/77 (16%), Positives = 23/77 (29%), Gaps = 5/77 (6%)
Query: 321 CEPGFKGQKCMDPCPEGTWGKQCVHYCSCPVESMECSRIDGNCSCPPGFRGAKCKERTCP 380
C G P G C C + + C+ + +C K+ C
Sbjct: 137 CPAGNIRGSIATPYKSGPPCADCPSACVNRLCTNPCNYNNDFSNCKSL-----AKKSKCQ 191
Query: 381 DGLYGEGCDRTCECNVE 397
+ C +C C+ +
Sbjct: 192 TEWIKKKCPASCFCHNK 208
Score = 28.7 bits (64), Expect = 6.7
Identities = 8/42 (19%), Positives = 14/42 (33%)
Query: 60 CPEGTWGKQCVHYCSCPVESMECSRIDGNCSCPPGFRGAKCK 101
CP + C + C+ + C + C + KC
Sbjct: 159 CPSACVNRLCTNPCNYNNDFSNCKSLAKKSKCQTEWIKKKCP 200
Score = 28.7 bits (64), Expect = 6.7
Identities = 10/62 (16%), Positives = 20/62 (32%), Gaps = 5/62 (8%)
Query: 62 EGTWGKQCVHYCSCPVESMECSRIDGNCSCPPGFRGAKCKERTCPDGLYGEGCDRTCECN 121
G C C + + C+ + +C K+ C + C +C C+
Sbjct: 152 SGPPCADCPSACVNRLCTNPCNYNNDFSNCKSL-----AKKSKCQTEWIKKKCPASCFCH 206
Query: 122 VE 123
+
Sbjct: 207 NK 208
Score = 28.3 bits (63), Expect = 8.4
Identities = 19/92 (20%), Positives = 31/92 (33%), Gaps = 8/92 (8%)
Query: 503 GSASCSPGSGQCVCRPGGAGQLCDRPCSEGRYGQNCTQ-ECRCMNG---AACNPQDGTCL 558
SA CS VC+ AG + + + G C C+N CN +
Sbjct: 121 ASAKCSSSKYLYVCQYCPAGNIRGSIATPYKSGPPCADCPSACVNRLCTNPCNYNNDFSN 180
Query: 559 CPAGYYGPLCQKRCEFMTYGRNCAQACTCFTE 590
C + +C+ + C +C C +
Sbjct: 181 CK----SLAKKSKCQTEWIKKKCPASCFCHNK 208
>3i2t_A Epidermal growth factor receptor, isoform A; EGFR, ectodomain,
unliganded, autoinhibited, ATP nucleotide-binding,
tyrosine-protein kinase; HET: NDG NAG BMA; 2.70A
{Drosophila melanogaster} PDB: 3ltf_A* 3ltg_A
Length = 551
Score = 33.4 bits (75), Expect = 0.28
Identities = 45/363 (12%), Positives = 69/363 (19%), Gaps = 23/363 (6%)
Query: 43 PTDTYTFRLMFPQCMDPCPEGTWGKQCVHYCSCPVESMECSRIDGNC--SCPPGFRGAKC 100
+ C C G C + C+ +C F C
Sbjct: 179 EGPKNCQKFSKLTCSPQCAGGRCYGPKPRECCHLFCAGGCTGPTQKDCIACKNFFDEGVC 238
Query: 101 KERTCPDGLYGEGCDRTCECNVENTKLCVPVCTDECIRGTCIAPNTCKCEVGFGGPTCNI 160
KE CP E N E C EC C
Sbjct: 239 KE-ECPPMRKYNPTTYVLETNPEGKYAYGATCVKECPGHLLRDNGAC-----------VR 286
Query: 161 ECPEGHYGPDCKLACQCENGAGCDPNTGACDCLDGYMGTHCEEVCGPGRFGQNCSQECQC 220
CP+ + P + +C + G R Q
Sbjct: 287 SCPQDKMDKGGECVPCNGPCPKTCPGVTVLHAGNIDSFRNCTVIDGNIRILDQTFSGFQD 346
Query: 221 RNGAECHPATGECSCQPGF---------TGSLCEERCPPGTHGPSCINRCRCQNGAICNP 271
TG L E P S +G
Sbjct: 347 VYANYTMGPRYIPLDPERLEVFSTVKEITGYLNIEGTHPQFRNLSYFRNLETIHGRQLME 406
Query: 272 ANGQCLCAPGWMGSVCNVPCTPGMWGQGCTVPCECFNGASCHHVTGECQCEPGFKGQKCM 331
+ L + + + + Q EP K
Sbjct: 407 SMFAALAIVKSSLYSLEMRNLKQISSGSVVIQHNRDLCYVSNIRWPAIQKEPEQKVWVNE 466
Query: 332 DPCPEGTWGKQCVHYCSCPVESMECSRIDGNCSCPPGFRGAKCKERTCPDGLYGEGCDRT 391
+ + + C + + D +C C + +RT
Sbjct: 467 NLRADLCEKNGTICSDQCNEDGCWGAGTDQCLNCKNFNFNGTCIADCGYISNAYKFDNRT 526
Query: 392 CEC 394
C+
Sbjct: 527 CKI 529
>1m6b_A C-ER, receptor protein-tyrosine kinase ERBB-3; cell surface
receptor, immunity, signaling transferase; HET: NAG NDG;
2.60A {Homo sapiens} SCOP: c.10.2.5 c.10.2.5 g.3.9.1
g.3.9.1 PDB: 3p11_A*
Length = 621
Score = 33.5 bits (75), Expect = 0.29
Identities = 42/453 (9%), Positives = 78/453 (17%), Gaps = 10/453 (2%)
Query: 114 CDRTCECNVENTKLCVPVCTDECIRGTCIAPNTCKCEVGFGGPTCNIECPEGHYGPDCKL 173
DR E V++ P C + C + + P+
Sbjct: 149 RDRDAEIVVKDNGRSCPPCHEVCKGRCWGPGSEDCQTLTKTICAPQCNGHCFGPNPNQCC 208
Query: 174 ACQCENGAGCDPNTGACDCLDGYMGTHCEEVCGPGRFGQNCSQECQCRNGAECHPATGEC 233
+C G +T C C C + + + +
Sbjct: 209 HDECAGGCSGPQDTDCFACRHFNDSGACVPRCPQPLVYNKLTFQLEPNPHTKYQYGGVCV 268
Query: 234 SCQPG---FTGSLCEERCPPGTHGPSCINRCRCQNGAICNPANGQCLCAPGWMGSVCNVP 290
+ P + C CPP C
Sbjct: 269 ASCPHNFVVDQTSCVRACPPDKM--EVDKNGLKMCEPCGGLCPKACEGTGSGSRFQTVDS 326
Query: 291 CTPGMWGQGCTVPCECFNGASCHHVTGECQCEPGFKGQKCMDPCPEGTWGKQCVHYCSCP 350
+ + + + + + + G +
Sbjct: 327 SNIDGFVNCTKILGNLDFLITGLNGDPWHKIPALDPEKLNVFRTVREITGYLNIQSWPPH 386
Query: 351 VESMECSRIDGNCSCPPGFRGAKCKERTCPDGLYGEGCDRTCECNVENTKLCHAVTGKCE 410
+ + + + G E + +
Sbjct: 387 MHNFSVFSNLTTIGGRSLYNRGFSLLIMKNLNVTSLGFRSLKEISAGRIYISANRQLCYH 446
Query: 411 CGPGWDGLTCDRPCPITRWGDNCSQHCNCKNDALCFPRNGTNTYQYFFLQSLTLFTFLSL 470
W + N + +C P + S
Sbjct: 447 HSLNWTKVLRGPTEERLDIKHNRPRRDCVAEGKVCDPLCSSGGCWGPGPGQCLSCRNYSR 506
Query: 471 ----THSGFSGRHCEKPCPQGSYGQDCSQTCLCSKEGSASCSPGSGQCV-CRPGGAGQLC 525
+ + C C + + GS C C G C
Sbjct: 507 GGVCVTHCNFLNGEPREFAHEAECFSCHPECQPMEGTATCNGSGSDTCAQCAHFRDGPHC 566
Query: 526 DRPCSEGRYGQNCTQECRCMNGAACNPQDGTCL 558
C G G C P C
Sbjct: 567 VSSCPHGVLGAKGPIYKYPDVQNECRPCHENCT 599
Score = 31.6 bits (70), Expect = 1.4
Identities = 50/400 (12%), Positives = 75/400 (18%), Gaps = 13/400 (3%)
Query: 60 CPEGTWGKQCVHYCSCPVESMECSRIDGNCSCPPGFRGAKCKERTCPDGLYGEGCDRTCE 119
C +G C D +C F + CP L E
Sbjct: 195 CNGHCFGPNPNQCCHDECAGGCSGPQDTDCFACRHFNDSGACVPRCPQPLVYNKLTFQLE 254
Query: 120 CNVENTKLCVPVCTDECIRGTCIAPNTCKCEVGFGGPTCNIECPEGHYGPDCKLACQCEN 179
N VC C + +C + P L +
Sbjct: 255 PNPHTKYQYGGVCVASCPHNFVVDQTSCVRACPPDKMEVDKNGL-KMCEPCGGLCPKACE 313
Query: 180 GAGCDPNTGACDCLDGYMGTHCEEVCGPGRFGQNCSQECQCRNGAECHPATGE-CSCQPG 238
G G D + +C ++ G F P
Sbjct: 314 GTGSGSRFQTVDSSNIDGFVNCTKILGNLDFLITGLNGDPWHKIPALDPEKLNVFRTVRE 373
Query: 239 FTGSLCEERCPPGTHGPSCINRCRCQNGAICNPANGQCLCAPGWMGSVCNVPCTPGMWGQ 298
TG L + PP H S + G L + +
Sbjct: 374 ITGYLNIQSWPPHMHNFSVFSNLTTIGGRSLYNRGFSLLIMKNLNVTSLGFRSLKEISAG 433
Query: 299 GCTVPCECFNGASCHHVTGECQCEPGFKGQKCMDPCPEGTWGKQCVHYCSCPVESMECSR 358
+ + P + P +
Sbjct: 434 RIYISANRQLCYHHSLNWTKVLRGPTEERLDIKHNRPRRDCVAEGKVCDPLCSSGGCWGP 493
Query: 359 IDGNCSCPPGFRGAKCKERTCPDGLYGEG----------CDRTCECNVENTKLCHAVTGK 408
G C + C C C+ + +
Sbjct: 494 GPGQCLSCRNYSRGGVCVTHCNFLNGEPREFAHEAECFSCHPECQPMEGTATCNGSGSDT 553
Query: 409 C-ECGPGWDGLTCDRPCPITRWGDNCSQHCNCKNDALCFP 447
C +C DG C CP G + C P
Sbjct: 554 CAQCAHFRDGPHCVSSCPHGVLGAKGPIYKYPDVQNECRP 593
Score = 29.2 bits (64), Expect = 6.4
Identities = 44/378 (11%), Positives = 71/378 (18%), Gaps = 9/378 (2%)
Query: 285 SVCNVPCTPGMWGQGCTVPCECFNGASCHHVTGECQCEPGFKGQKCMDPCPEGTWGKQCV 344
+ + C + C C +G
Sbjct: 146 DIVRDRDAEIVVKDNGRSCPPCHEVCKGRCWGPGSEDCQTLTKTICAPQCNGHCFGPNPN 205
Query: 345 HYCSCPVESMECSRIDGNCSCPPGFRGAKCKERTCPDGLYGEGCDRTCECNVENTKLCHA 404
C D +C F + CP L E N
Sbjct: 206 QCCHDECAGGCSGPQDTDCFACRHFNDSGACVPRCPQPLVYNKLTFQLEPNPHTKYQYGG 265
Query: 405 VT-GKCECGPGWDGLTCDRPCPITRWGDNCSQHCNCKNDALCFPRNGTNTYQYFFLQSLT 463
V C D +C R CP + + + C+ P+ T Q++
Sbjct: 266 VCVASCPHNFVVDQTSCVRACPPDKMEVDKNGLKMCEPCGGLCPKACEGTGSGSRFQTVD 325
Query: 464 LFTFLSLTHSG-------FSGRHCEKPCPQGSYGQDCSQTCLCSKEGSASCSPGSGQCVC 516
+ F D + + +
Sbjct: 326 SSNIDGFVNCTKILGNLDFLITGLNGDPWHKIPALDPEKLNVFRTVREITGYLNIQSWPP 385
Query: 517 RPGGAGQLCDRPCSEGRYGQNCTQECRCMNGAACNPQDGTCLCPAGYYGPLCQKRCEFMT 576
+ GR N M L +
Sbjct: 386 HMHNFSVFSNLTTIGGRSLYNRGFSLLIMKNLNVTSLGFRSLKEISAGRIYISANRQLC- 444
Query: 577 YGRNCAQACTCFTENSQGCDIVTGKCICRPGFKGHRCETQCSNPNTYGEDCSLDCGCNNG 636
Y + + DI + +G C+ CS+ +G C N
Sbjct: 445 YHHSLNWTKVLRGPTEERLDIKHNRPRRDCVAEGKVCDPLCSSGGCWGPGPGQCLSCRNY 504
Query: 637 GTCNQLDGGCNCGRGYQG 654
CN G
Sbjct: 505 SRGGVCVTHCNFLNGEPR 522
>2f83_A Coagulation factor XI; protease, apple domain, hydrolase; HET: NAG;
2.87A {Homo sapiens} PDB: 2j8j_A 2j8l_A
Length = 625
Score = 33.3 bits (76), Expect = 0.35
Identities = 19/135 (14%), Positives = 34/135 (25%), Gaps = 2/135 (1%)
Query: 523 QLCDRPCSEGRYGQNCTQECRCMNGAAC--NPQDGTCLCPAGYYGPLCQKRCEFMTYGRN 580
LC SE ++ + ++G + C + +Y E
Sbjct: 253 NLCLLKTSESGLPSTRIKKSKALSGFSLQSCRHSIPVFCHSSFYHDTDFLGEELDIVAAK 312
Query: 581 CAQACTCFTENSQGCDIVTGKCICRPGFKGHRCETQCSNPNTYGEDCSLDCGCNNGGTCN 640
+AC N+ C T +G + N G +G T
Sbjct: 313 SHEACQKLCTNAVRCQFFTYTPAQASCNEGKGKCYLKLSSNGSPTKILHGRGGISGYTLR 372
Query: 641 QLDGGCNCGRGYQGK 655
C + +
Sbjct: 373 LCKMDNECTTKIKPR 387
Score = 30.2 bits (68), Expect = 3.5
Identities = 12/127 (9%), Positives = 27/127 (21%), Gaps = 9/127 (7%)
Query: 286 VCNVPCTPGMWGQGCTVPCECFNGASCHH--VTGECQCEPGFKGQKCM----DPCPEGTW 339
+C + + + +G S + C F
Sbjct: 254 LCLLKTSESGLPSTRIKKSKALSGFSLQSCRHSIPVFCHSSFYHDTDFLGEELDIVAAKS 313
Query: 340 GKQCVHYCS--CPVESMECSRIDGNCSCPPGF-RGAKCKERTCPDGLYGEGCDRTCECNV 396
+ C C+ + + +C+ G + L+G G +
Sbjct: 314 HEACQKLCTNAVRCQFFTYTPAQASCNEGKGKCYLKLSSNGSPTKILHGRGGISGYTLRL 373
Query: 397 ENTKLCH 403
Sbjct: 374 CKMDNEC 380
>3asi_A Neurexin-1-alpha; beta-sandwich, cell adhesion, synapse maturation,
neuroligin glycosylation, membrane; HET: NAG; 2.30A {Bos
taurus}
Length = 410
Score = 32.7 bits (74), Expect = 0.46
Identities = 17/80 (21%), Positives = 25/80 (31%), Gaps = 10/80 (12%)
Query: 517 RPGGAGQLCDRPCSEGRYGQNCTQECRCMNGAACNPQDG--TCLCPAGYY-GPLCQKRCE 573
G + C+ P QE C N C Q +C C + GPLC
Sbjct: 173 CNGQIERGCEGPS-------TTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGPLCNDPGT 225
Query: 574 FMTYGRNCAQACTCFTENSQ 593
+ + Q + N +
Sbjct: 226 TYIFSKGGGQITYKWPPNDR 245
Score = 31.9 bits (72), Expect = 0.97
Identities = 11/48 (22%), Positives = 13/48 (27%), Gaps = 3/48 (6%)
Query: 213 NCSQECQCRNGAECHP--ATGECSC-QPGFTGSLCEERCPPGTHGPSC 257
QE C N C C C F+G LC +
Sbjct: 186 TTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGPLCNDPGTTYIFSKGG 233
Score = 31.1 bits (70), Expect = 1.5
Identities = 10/43 (23%), Positives = 16/43 (37%), Gaps = 3/43 (6%)
Query: 177 CENGAGCDP--NTGACDC-LDGYMGTHCEEVCGPGRFGQNCSQ 216
C N C + +CDC + + G C + F + Q
Sbjct: 193 CSNQGVCLQQWDGFSCDCSMTSFSGPLCNDPGTTYIFSKGGGQ 235
Score = 29.6 bits (66), Expect = 4.3
Identities = 12/41 (29%), Positives = 16/41 (39%), Gaps = 3/41 (7%)
Query: 633 CNNGGTCNQLDGG--CNC-GRGYQGKLCTAPCPEGQYGYNC 670
C+N G C Q G C+C + G LC P +
Sbjct: 193 CSNQGVCLQQWDGFSCDCSMTSFSGPLCNDPGTTYIFSKGG 233
Score = 29.6 bits (66), Expect = 5.1
Identities = 18/83 (21%), Positives = 27/83 (32%), Gaps = 11/83 (13%)
Query: 386 EGCDRTCECNVENTKLCHAVTGKCECGPGWDGLTCDRPCPITRW-GDNCSQHCNCKNDAL 444
GC+ E+ C G C WDG +CD C +T + G C+
Sbjct: 179 RGCEGPSTTCQED--SCS-NQGVCL--QQWDGFSCD--CSMTSFSGPLCNDPGTTYI--- 228
Query: 445 CFPRNGTNTYQYFFLQSLTLFTF 467
G TY++ +
Sbjct: 229 FSKGGGQITYKWPPNDRPSTRAD 251
>1aut_L Activated protein C; serine proteinase, plasma calcium binding,
glycoprotein, HYD hydrolase inhibitor complex, blood
clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: g.3.11.1
g.3.11.1 PDB: 3f6u_L*
Length = 114
Score = 30.8 bits (70), Expect = 0.56
Identities = 20/84 (23%), Positives = 27/84 (32%), Gaps = 9/84 (10%)
Query: 169 PDCKLACQCENGAGC--DPNTGACDCLDGYMGTHCEEVCGPGRFGQNCSQECQCRNGAEC 226
+ A C C + +CDC G+ G C+ NCS C
Sbjct: 14 LEHPCASLCCGHGTCIDGIGSFSCDCRSGWEGRFCQREVSF----LNCSL-DNGGCTHYC 68
Query: 227 HPATG--ECSCQPGFTGSLCEERC 248
G CSC PG+ +C
Sbjct: 69 LEEVGWRRCSCAPGYKLGDDLLQC 92
Score = 29.7 bits (67), Expect = 1.3
Identities = 18/90 (20%), Positives = 26/90 (28%), Gaps = 19/90 (21%)
Query: 213 NCSQECQCRNGAECHPATG--ECSCQPGFTGSLCEERCPPGTHGPSCINRCRC-----QN 265
C C G C C+ G+ G C+ ++ C
Sbjct: 15 EHPCASLCCGHGTCIDGIGSFSCDCRSGWEGRFCQR----------EVSFLNCSLDNGGC 64
Query: 266 GAICNPANG--QCLCAPGWMGSVCNVPCTP 293
C G +C CAPG+ + C P
Sbjct: 65 THYCLEEVGWRRCSCAPGYKLGDDLLQCHP 94
Score = 27.4 bits (61), Expect = 8.9
Identities = 18/65 (27%), Positives = 26/65 (40%), Gaps = 8/65 (12%)
Query: 601 KCICRPGFKGHRCETQCSNPNTYGEDCSLDCGCNNGGTCNQLDGG--CNCGRGYQGKLCT 658
C CR G++G C+ + S +CSLD C + G C+C GY+
Sbjct: 36 SCDCRSGWEGRFCQREVSF-----LNCSLD-NGGCTHYCLEEVGWRRCSCAPGYKLGDDL 89
Query: 659 APCPE 663
C
Sbjct: 90 LQCHP 94
>2gai_A DNA topoisomerase I; zinc ribbon; HET: DNA; 1.70A {Thermotoga
maritima} PDB: 2gaj_A*
Length = 633
Score = 32.2 bits (74), Expect = 0.80
Identities = 13/48 (27%), Positives = 15/48 (31%), Gaps = 8/48 (16%)
Query: 73 CSC----PVESMECSRIDGNCSCPPGFRGAKCKERTCPDGLYGEGCDR 116
C C V++ E F G K E PDG EG
Sbjct: 578 CECGKTRSVKNDEI----AVIDDGKIFLGRKDSESGSPDGRSVEGKGN 621
Score = 32.2 bits (74), Expect = 0.80
Identities = 13/48 (27%), Positives = 15/48 (31%), Gaps = 8/48 (16%)
Query: 347 CSC----PVESMECSRIDGNCSCPPGFRGAKCKERTCPDGLYGEGCDR 390
C C V++ E F G K E PDG EG
Sbjct: 578 CECGKTRSVKNDEI----AVIDDGKIFLGRKDSESGSPDGRSVEGKGN 621
>3h3g_A Fusion protein of maltose-binding periplasmic DOM human parathyroid
hormone receptor...; GPCR, extracellular domain, PTHRP,
PTH, PThr1, sugar transpo transport, membrane protein;
HET: MAL; 1.94A {Escherichia coli} PDB: 3c4m_A* 3l2j_A*
Length = 539
Score = 31.8 bits (72), Expect = 0.90
Identities = 13/48 (27%), Positives = 17/48 (35%), Gaps = 5/48 (10%)
Query: 636 GGTCNQLDGGCNC-GRGYQGKLCTAPCPEGQYGYNCK----EECLTKG 678
G C C G G++ PCP+ Y +N K C G
Sbjct: 451 GRPCLPEWDHILCWPLGAPGEVVAVPCPDYIYDFNHKGHAYRRCDRNG 498
>1xta_A Natrin 1; crisp, serine protease, ION channel blocking, cobra,
toxin; 1.58A {Naja atra} PDB: 2giz_A 1xx5_A 3mz8_A
1rc9_A 1wvr_A
Length = 221
Score = 31.4 bits (71), Expect = 0.97
Identities = 11/62 (17%), Positives = 21/62 (33%), Gaps = 5/62 (8%)
Query: 62 EGTWGKQCVHYCSCPVESMECSRIDGNCSCPPGFRGAKCKERTCPDGLYGEGCDRTCECN 121
G C C + + C+ + +C + K+ +C D C +C C
Sbjct: 163 LGPPCGDCPSACDNGLCTNPCTIYNKLTNCD-----SLLKQSSCQDDWIKSNCPASCFCR 217
Query: 122 VE 123
+
Sbjct: 218 NK 219
Score = 31.4 bits (71), Expect = 0.97
Identities = 11/62 (17%), Positives = 21/62 (33%), Gaps = 5/62 (8%)
Query: 336 EGTWGKQCVHYCSCPVESMECSRIDGNCSCPPGFRGAKCKERTCPDGLYGEGCDRTCECN 395
G C C + + C+ + +C + K+ +C D C +C C
Sbjct: 163 LGPPCGDCPSACDNGLCTNPCTIYNKLTNCD-----SLLKQSSCQDDWIKSNCPASCFCR 217
Query: 396 VE 397
+
Sbjct: 218 NK 219
Score = 30.6 bits (69), Expect = 1.5
Identities = 13/46 (28%), Positives = 15/46 (32%), Gaps = 1/46 (2%)
Query: 247 RCPPGTHGPSCINRCRCQNGAI-CNPANGQCLCAPGWMGSVCNVPC 291
CP C N C N C+ Q C W+ S C C
Sbjct: 169 DCPSACDNGLCTNPCTIYNKLTNCDSLLKQSSCQDDWIKSNCPASC 214
Score = 30.6 bits (69), Expect = 1.5
Identities = 13/46 (28%), Positives = 15/46 (32%), Gaps = 1/46 (2%)
Query: 741 RCPPGTHGPSCINRCRCQNGAI-CNPANGQCLCAPGWMGSVCNVPC 785
CP C N C N C+ Q C W+ S C C
Sbjct: 169 DCPSACDNGLCTNPCTIYNKLTNCDSLLKQSSCQDDWIKSNCPASC 214
Score = 29.5 bits (66), Expect = 3.4
Identities = 8/42 (19%), Positives = 14/42 (33%)
Query: 60 CPEGTWGKQCVHYCSCPVESMECSRIDGNCSCPPGFRGAKCK 101
CP C + C+ + C + SC + + C
Sbjct: 170 CPSACDNGLCTNPCTIYNKLTNCDSLLKQSSCQDDWIKSNCP 211
Score = 29.5 bits (66), Expect = 3.4
Identities = 8/42 (19%), Positives = 14/42 (33%)
Query: 334 CPEGTWGKQCVHYCSCPVESMECSRIDGNCSCPPGFRGAKCK 375
CP C + C+ + C + SC + + C
Sbjct: 170 CPSACDNGLCTNPCTIYNKLTNCDSLLKQSSCQDDWIKSNCP 211
>2y38_A Laminin subunit alpha-5; structural protein, cell adhesion,
basement membrane; HET: NAG; 2.90A {Mus musculus}
Length = 403
Score = 31.8 bits (71), Expect = 1.1
Identities = 25/150 (16%), Positives = 38/150 (25%), Gaps = 27/150 (18%)
Query: 87 GNCSCPPGFRGAKCKERTCPDGLYGEGCDRTCECNVENTKLCVPVCTDECIRGTCIAPNT 146
+ + C G CDR C T + N
Sbjct: 272 ADVCDAKDPLDPFRLQCACQHNTCGGSCDRCCP----------GFNQQPWKPATTDSANE 321
Query: 147 CKCEVGFGGPTCNIECPEGHYGPDCKLACQCENGAGCDPNTGAC-DCLDGYMGTHCEEVC 205
C+ C+ + +Y P+ +N G C DC G +CE C
Sbjct: 322 CQS------CNCHGHAYDCYYDPEVDRREASQNQDNVYQGGGVCLDCQHHTTGINCER-C 374
Query: 206 GPGRFG--------QNCSQECQCRNGAECH 227
PG F + + + H
Sbjct: 375 LPGFFRAPDQPLDSPHVCRPAAA-HHHHHH 403
Score = 31.4 bits (70), Expect = 1.5
Identities = 35/196 (17%), Positives = 47/196 (23%), Gaps = 30/196 (15%)
Query: 127 LCVPVCTDECIRGTCIAPNTCKCEVGFGGPTCNIECPEGHYGPDCKLACQCENGAGCDPN 186
+ G + T + +I +G A C+ DP
Sbjct: 229 FLRTNTLLGHLMGKALRDPTVTRRYYYSIKDISIGGRCVCHGH----ADVCDAKDPLDPF 284
Query: 187 TGACDCLDGYMGTHCEEVCGPGRFGQNCSQECQCRNGAECHPATGECSCQPGFTGSLCEE 246
C C G C+ C PG F Q + + EC C
Sbjct: 285 RLQCACQHNTCGGSCDR-CCPG-FNQQPWKPATTDSANECQSCN-------------CHG 329
Query: 247 RCPPGTHGPSCINRCRCQNGAICNPANGQCL-CAPGWMGSVCNVPCTPGMWGQGCT---- 301
+ P R QN G CL C G C C PG +
Sbjct: 330 HAYDCYYDPEVDRREASQNQDNVYQGGGVCLDCQHHTTGINCER-CLPGFFRAPDQPLDS 388
Query: 302 ----VPCECFNGASCH 313
P + H
Sbjct: 389 PHVCRPAAA-HHHHHH 403
Score = 30.6 bits (68), Expect = 2.0
Identities = 22/145 (15%), Positives = 36/145 (24%), Gaps = 9/145 (6%)
Query: 525 CDRPCSEGRYGQNCTQECRCMNGAACNPQDGTCLCPAGYYGPLCQKRCEFMTYGRNCAQA 584
R + R ++ C+ C Q C+ T G +C +
Sbjct: 243 ALRDPTVTRRYYYSIKDISIGGRCVCHGHADVCDAKDPLDPFRLQCACQHNTCGGSCDRC 302
Query: 585 CTCFTENSQGCDIVTGKCICRPGFKGHRCETQCSNPNTYGEDCSLDCG--CNNGGTCNQL 642
C F + C+ +P + S + GG C
Sbjct: 303 CPGFNQQPWKPATTDSANECQSCNCHGHAYDCYYDPEVDRREASQNQDNVYQGGGVC--- 359
Query: 643 DGGCNCGRGYQGKLCTAPCPEGQYG 667
+C G C C G +
Sbjct: 360 ---LDCQHHTTGINCER-CLPGFFR 380
>3nxp_A Prethrombin-1; allostery, blood coagulation, hydro kringle, serine
protease, zymogen; HET: NAG; 2.20A {Homo sapiens}
Length = 424
Score = 31.8 bits (72), Expect = 1.1
Identities = 18/133 (13%), Positives = 32/133 (24%), Gaps = 18/133 (13%)
Query: 128 CVPVCTDECIRGTCIAPNTCKCEVGFGGPTCNIECPEGHYGPDCKLACQCENGAGCDPNT 187
+ + C P+ + G C + G +G C+ A +
Sbjct: 51 QDFNSAVQLVENFCRNPDGDEE-----GVWCYVAGKPGDFGYCDLNYCEE---AVEEETG 102
Query: 188 GACDCLDGYMGTHCEEVCGPGRFGQNCSQECQCRNGAECHPATGECSCQPGFTGSLCEER 247
D E+ S+ N A +C +P F E++
Sbjct: 103 DGLD----------EDSDRAIEGATATSEYQTFFNPATFGSGEADCGLRPLFEKKSLEDK 152
Query: 248 CPPGTHGPSCINR 260
R
Sbjct: 153 TERELLESYIDGR 165
Score = 29.8 bits (67), Expect = 4.3
Identities = 13/111 (11%), Positives = 24/111 (21%), Gaps = 14/111 (12%)
Query: 340 GKQCVHYCSCPVESMECSRIDGNCSCPPGFRGAKCKERTCPDGLYGEGCDRTCECNVENT 399
G C+ + S +++ + + E C +G + C V
Sbjct: 33 GLPCLAWASAQAKALS-----KHQDFNSAVQ---LVENFC---RNPDGDEEGVWCYVAGK 81
Query: 400 KLCHAVTGKCEC---GPGWDGLTCDRPCPITRWGDNCSQHCNCKNDALCFP 447
C G D G + + F
Sbjct: 82 PGDFGYCDLNYCEEAVEEETGDGLDEDSDRAIEGATATSEYQTFFNPATFG 132
>4aqt_A Laminin subunit gamma-1; cell adhesion; HET: NAG BMA; 3.20A {Mus
musculus}
Length = 375
Score = 31.3 bits (70), Expect = 1.2
Identities = 23/123 (18%), Positives = 35/123 (28%), Gaps = 27/123 (21%)
Query: 165 GHYGPDCKLACQCENGAGC----DPNTGACDCLDGYMGTHCEEVCGPGRFG-------QN 213
C+C A + + C+C G CE+ C P
Sbjct: 245 AISDFAVGGRCKCNGHASECVKNEFDKLMCNCKHNTYGVDCEK-CLPFFNDRPWRRATAE 303
Query: 214 CSQEC----------QCRNGAECHPATGE----CSCQPGFTGSLCEERCPPGTHGPSCIN 259
+ EC +C E + +TG +C+ G+ C ERC
Sbjct: 304 SASECLPCDCNGRSQECYFDPELYRSTGHGGHCTNCRDNTDGAKC-ERCRENFFRLGNTE 362
Query: 260 RCR 262
C
Sbjct: 363 ACS 365
>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET:
NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A*
Length = 1245
Score = 31.4 bits (70), Expect = 1.5
Identities = 12/57 (21%), Positives = 18/57 (31%), Gaps = 3/57 (5%)
Query: 610 GHRCETQCSNPNTYGEDCSLDCGCNNGGTCNQLDGGCNC---GRGYQGKLCTAPCPE 663
+ C NGG C+ +D C G++GK C+ E
Sbjct: 175 DDEPPNSGGGSPCEAGEEGEGGVCLNGGVCSVVDDQAVCDCSRTGFRGKDCSQGKEE 231
Score = 30.6 bits (68), Expect = 2.6
Identities = 12/78 (15%), Positives = 24/78 (30%), Gaps = 6/78 (7%)
Query: 719 LFVNLTYGILYKTLVRLRECEERCPPGTHGPSCINRCR---CQNGAICNPANGQCLC--- 772
+ V + + + + E G C NG +C+ + Q +C
Sbjct: 157 VRVQSSLALPVDSGEVKLDDEPPNSGGGSPCEAGEEGEGGVCLNGGVCSVVDDQAVCDCS 216
Query: 773 APGWMGSVCNVPCTPGMW 790
G+ G C+ +
Sbjct: 217 RTGFRGKDCSQGKEEYIA 234
Score = 30.6 bits (68), Expect = 2.6
Identities = 12/68 (17%), Positives = 19/68 (27%), Gaps = 6/68 (8%)
Query: 235 CQPGFTGSLCEERCPPGTHGPSCINRCR---CQNGAICNPANGQCLC---APGWMGSVCN 288
G E G C NG +C+ + Q +C G+ G C+
Sbjct: 167 VDSGEVKLDDEPPNSGGGSPCEAGEEGEGGVCLNGGVCSVVDDQAVCDCSRTGFRGKDCS 226
Query: 289 VPCTPGMW 296
+
Sbjct: 227 QGKEEYIA 234
Score = 30.6 bits (68), Expect = 2.9
Identities = 17/74 (22%), Positives = 24/74 (32%), Gaps = 7/74 (9%)
Query: 503 GSASCSPGSGQCVCRPGGAGQLCDRPCSEGRYGQNCTQECRCMNGAACNPQDG--TCLCP 560
S + SG+ PC G + C+NG C+ D C C
Sbjct: 161 SSLALPVDSGEVKLDDEPPNSGGGSPCEAG----EEGEGGVCLNGGVCSVVDDQAVCDCS 216
Query: 561 A-GYYGPLCQKRCE 573
G+ G C + E
Sbjct: 217 RTGFRGKDCSQGKE 230
Score = 30.2 bits (67), Expect = 3.7
Identities = 15/120 (12%), Positives = 28/120 (23%), Gaps = 6/120 (5%)
Query: 73 CSCPVESMECSRIDGNCSCPPGFRGAKCKER--TCPDGLYGEGCDRTCECNVENTKLCVP 130
+ + + F+G R + G + + +
Sbjct: 128 LPPELRAAALKLTLASVREREPFKGWIRDVRVQSSLALPVDSGEVKLDDEPPNSGGGSPC 187
Query: 131 VCTDECIRGTCIAPNTCKCEVGFGGPTCNIECPEGHYGPDCKLACQCENGAGCDPNTGAC 190
+E G C N C V C +C + + E A + C
Sbjct: 188 EAGEEGEGGVC--LNGGVCSVVDDQAVC--DCSRTGFRGKDCSQGKEEYIATFKGSEYFC 243
Score = 29.4 bits (65), Expect = 5.9
Identities = 20/83 (24%), Positives = 25/83 (30%), Gaps = 9/83 (10%)
Query: 266 GAICNPANGQCLCAPGWMGSVCNVPCTPGMWGQGCTVPCE------CFNGASCHHVTGEC 319
G I + L P G V P G E C NG C V +
Sbjct: 152 GWIRDVRVQSSLALPVDSGEVKLDDEPPNSGGGSPCEAGEEGEGGVCLNGGVCSVVDDQA 211
Query: 320 QCE---PGFKGQKCMDPCPEGTW 339
C+ GF+G+ C E
Sbjct: 212 VCDCSRTGFRGKDCSQGKEEYIA 234
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase,
hydrolase-lipid binding P complex; 3.30A {Homo sapiens}
PDB: 3p5c_L
Length = 400
Score = 31.0 bits (69), Expect = 1.6
Identities = 22/165 (13%), Positives = 38/165 (23%), Gaps = 26/165 (15%)
Query: 483 PCPQGSYGQDCSQTCLCSKEGSASCSPGSGQCVCRPGGAGQLCDRPCSEGRYGQNCTQEC 542
C + G CS C +C+C G + + C
Sbjct: 2 ECLDNNGG--CSHVCNDL--------KIGYECLCPDG----------FQLVAQRRCEDID 41
Query: 543 RCMNGAACNPQDGTCLCPAGYYGPLCQKRCEFMTYGRNCAQACTC---FTENSQGCDIVT 599
C + C C+ G Y C++ + + + C + F N +T
Sbjct: 42 ECQDPDTC---SQLCVNLEGGYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMT 98
Query: 600 GKCICRPGFKGHRCETQCSNPNTYGEDCSLDCGCNNGGTCNQLDG 644
+ + QLD
Sbjct: 99 LDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDR 143
>3t3p_B Integrin beta-3; integrin, cell adhesion, blood clotting,
fibrinogen, platele; HET: NAG BMA MAN; 2.20A {Homo
sapiens} PDB: 3t3m_B* 3nig_B* 3nif_B* 3nid_B* 2vdr_B*
2vc2_B* 2vdk_B* 2vdm_B* 2vdn_B* 2vdl_B* 2vdp_B* 2vdq_B*
2vdo_B* 3fcu_B* 1txv_B* 1ty3_B* 1ty5_B* 1ty6_B* 1ty7_B*
1tye_B*
Length = 472
Score = 31.0 bits (69), Expect = 1.6
Identities = 20/60 (33%), Positives = 24/60 (40%), Gaps = 7/60 (11%)
Query: 187 TGACDCLDGYMGTHCEEVCGPGRFGQNCSQECQCRNGA-ECHPATGECSCQPGFTGSLCE 245
G D L + C+ C + S C NG EC G C C PG+ GS CE
Sbjct: 419 VGFKDSLIVQVTFDCD--CACQAQAEPNSHRCNNGNGTFEC----GVCRCGPGWLGSQCE 472
>2w86_A Fibrillin-1, fibrillin1; phosphoprotein, EGF-like domain, disease
mutation, craniosynostosis, extracellular matrix,
fibrillin calcium cbegf hybrid; 1.80A {Homo sapiens}
Length = 147
Score = 30.0 bits (68), Expect = 1.7
Identities = 12/81 (14%), Positives = 17/81 (20%), Gaps = 9/81 (11%)
Query: 161 ECPEGHYGPDCKLACQCENGAGCDPNTGACDCLDGYMGTHCEEVCGPGRFGQNCSQECQC 220
EC K C C + CE C
Sbjct: 27 ECSSESTLDPTKTICIETIK---------GTCWQTVIDGRCEININGATLKSQCCSSLGA 77
Query: 221 RNGAECHPATGECSCQPGFTG 241
G+ C + C G++
Sbjct: 78 AWGSPCTLCQVDPICGKGYSR 98
Score = 28.5 bits (64), Expect = 4.4
Identities = 13/98 (13%), Positives = 19/98 (19%), Gaps = 22/98 (22%)
Query: 233 CSCQPGFTGSLCEERCPPGTHGPSCINRCRCQNGAICNPANGQCLCAPGWMGSVCNVPCT 292
C C T + C + C I C +
Sbjct: 26 CECSSESTLDPTKTICIE-------TIKGTCWQTVIDG---------------RCEININ 63
Query: 293 PGMWGQGCTVPCECFNGASCHHVTGECQCEPGFKGQKC 330
C G+ C + C G+ K
Sbjct: 64 GATLKSQCCSSLGAAWGSPCTLCQVDPICGKGYSRIKG 101
Score = 28.5 bits (64), Expect = 4.9
Identities = 12/82 (14%), Positives = 21/82 (25%), Gaps = 11/82 (13%)
Query: 484 CPQGSYGQDCSQTCLCSKEGSASCSPGSGQCVCRPGGAGQLCDRPCSEGRYGQNCTQECR 543
C S C+ + +G+ + G+C + C
Sbjct: 28 CSSESTLDPTKTICIETIKGTCWQTVIDGRCEI-----------NINGATLKSQCCSSLG 76
Query: 544 CMNGAACNPQDGTCLCPAGYYG 565
G+ C +C GY
Sbjct: 77 AAWGSPCTLCQVDPICGKGYSR 98
>2e4u_A Metabotropic glutamate receptor 3; G-protein-coupled receptor,
neuron, central nerve system, SI protein; HET: NAG GLU;
2.35A {Rattus norvegicus} PDB: 2e4v_A* 2e4w_A* 2e4x_A*
2e4y_A*
Length = 555
Score = 30.5 bits (69), Expect = 2.9
Identities = 14/63 (22%), Positives = 18/63 (28%), Gaps = 23/63 (36%)
Query: 285 SVCNVPCTPGMW-----GQGCTVPCECFNGASC---HHVTGECQCEPGFKGQKCMDPCPE 336
S C+ PC P G C C+ C ++ E C C
Sbjct: 483 SQCSDPCAPNEMKNMQPGDVC-----CWICIPCEPYEYLVDEFTCM----------DCGP 527
Query: 337 GTW 339
G W
Sbjct: 528 GQW 530
Score = 29.8 bits (67), Expect = 3.9
Identities = 13/61 (21%), Positives = 16/61 (26%), Gaps = 19/61 (31%)
Query: 242 SLCEERCPPGTH-----GPSCINRC-RCQNGAICNPANGQCLCAPGWMGSVCNVPCTPGM 295
S C + C P G C C C+ C + C PG
Sbjct: 483 SQCSDPCAPNEMKNMQPGDVCCWICIPCEPYEYLVDEF-TC------------MDCGPGQ 529
Query: 296 W 296
W
Sbjct: 530 W 530
>3ltf_D Protein spitz; receptor-ligand complex ectodomain cysteine rich
domain EGF ATP-binding, kinase, nucleotide-binding,
receptor; HET: NAG MAN; 3.20A {Drosophila melanogaster}
Length = 58
Score = 27.2 bits (60), Expect = 3.1
Identities = 13/41 (31%), Positives = 17/41 (41%)
Query: 247 RCPPGTHGPSCINRCRCQNGAICNPANGQCLCAPGWMGSVC 287
+CP C+N C I + C CA G+MG C
Sbjct: 6 KCPETFDAWYCLNDAHCFAVKIADLPVYSCECAIGFMGQRC 46
Score = 27.2 bits (60), Expect = 3.1
Identities = 13/41 (31%), Positives = 17/41 (41%)
Query: 741 RCPPGTHGPSCINRCRCQNGAICNPANGQCLCAPGWMGSVC 781
+CP C+N C I + C CA G+MG C
Sbjct: 6 KCPETFDAWYCLNDAHCFAVKIADLPVYSCECAIGFMGQRC 46
Score = 27.2 bits (60), Expect = 3.8
Identities = 11/51 (21%), Positives = 17/51 (33%)
Query: 527 RPCSEGRYGQNCTQECRCMNGAACNPQDGTCLCPAGYYGPLCQKRCEFMTY 577
C E C + C + +C C G+ G C+ + TY
Sbjct: 5 YKCPETFDAWYCLNDAHCFAVKIADLPVYSCECAIGFMGQRCEYKEIDNTY 55
>1edm_B Factor IX; epidermal growth factor, EGF, calcium- binding, EGF-like
domain, structure and function, coagulation factor;
1.50A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ixa_A
Length = 39
Score = 26.7 bits (60), Expect = 3.4
Identities = 12/28 (42%), Positives = 12/28 (42%), Gaps = 2/28 (7%)
Query: 220 CRNGAECHPATG--ECSCQPGFTGSLCE 245
C NG C EC C GF G CE
Sbjct: 11 CLNGGSCKDDINSYECWCPFGFEGKNCE 38
Score = 25.9 bits (58), Expect = 5.7
Identities = 10/28 (35%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
Query: 544 CMNGAACNPQDG--TCLCPAGYYGPLCQ 569
C+NG +C C CP G+ G C+
Sbjct: 11 CLNGGSCKDDINSYECWCPFGFEGKNCE 38
Score = 25.9 bits (58), Expect = 6.5
Identities = 11/27 (40%), Positives = 14/27 (51%), Gaps = 2/27 (7%)
Query: 633 CNNGGTCNQLDGG--CNCGRGYQGKLC 657
C NGG+C C C G++GK C
Sbjct: 11 CLNGGSCKDDINSYECWCPFGFEGKNC 37
Score = 25.1 bits (56), Expect = 9.6
Identities = 12/28 (42%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
Query: 177 CENGAGC--DPNTGACDCLDGYMGTHCE 202
C NG C D N+ C C G+ G +CE
Sbjct: 11 CLNGGSCKDDINSYECWCPFGFEGKNCE 38
>3v4v_B Integrin beta-7; cell adhesion, madcam-1, membrane; HET: NAG BMA
MAN 0DU; 3.10A {Homo sapiens} PDB: 3v4p_B*
Length = 503
Score = 30.3 bits (67), Expect = 3.4
Identities = 11/39 (28%), Positives = 13/39 (33%), Gaps = 5/39 (12%)
Query: 388 CDRTCECNVENTKLCHAVTGKCECG-----PGWDGLTCD 421
CD C C G +CG PG G C+
Sbjct: 455 CDCNCSDTQPQAPHCSDGQGHLQCGVCSCAPGRLGRLCE 493
Score = 29.9 bits (66), Expect = 3.5
Identities = 16/50 (32%), Positives = 19/50 (38%), Gaps = 8/50 (16%)
Query: 197 MGTHCEEVCGPGRFGQNCSQECQCRNGA-ECHPATGECSCQPGFTGSLCE 245
+ T C+ C C G +C G CSC PG G LCE
Sbjct: 451 LHTLCD--CNCSDTQPQAP-HCSDGQGHLQC----GVCSCAPGRLGRLCE 493
>4dur_A Plasminogen, serine protease; fibrinolysis, hydrolase; HET: NAG GAL
SIA; 2.45A {Homo sapiens} PDB: 4a5t_S* 4duu_A 2feb_A
Length = 791
Score = 30.0 bits (67), Expect = 3.5
Identities = 48/373 (12%), Positives = 74/373 (19%), Gaps = 56/373 (15%)
Query: 72 YCSCPVESMECSRIDGN---CSCPPGFRGAKCKERTCPDGLYGEGCDRTCECNVENTKLC 128
YC EC G G +C+ ++
Sbjct: 156 YCDILECEEECMHCSGENYDGKISKTMSGLECQ-------------------AWDSQSPH 196
Query: 129 VPVCTDECIRGTCIAPNTCKCEVGFGGPTCNIECPEGHYGPDCKLACQCENGAGCDPNTG 188
+ N C+ P C P + C P++G
Sbjct: 197 AHGYIPSKFPNKNLKKNYCRNPDRELRPWCFTTDPNKRWEL-----CDIPRCTTPPPSSG 251
Query: 189 ACDCLDGYMGTHCEEVCGPGRFGQNCSQECQCRNGAECHPATGECSCQPGFTGSLCEERC 248
G + G C H T E + C R
Sbjct: 252 PTYQCLKGTGENYRGNVAVTVSGHTCQHW--SAQTPHTHNRTPENFPCKNLDENYC--RN 307
Query: 249 PPGTHGPSCINRCRCQNGAICNPANGQCLCAPGWMGSVCNVPCTPGMWGQGCTVPCECFN 308
P G P C C C +P + + +
Sbjct: 308 PDGKRAPWCHTTNSQVRWEYCK--IPSCDSSPVSTEQLAPT--------APPELTPVVQD 357
Query: 309 GASCHHVTGECQCEPGFKGQKCMDPCPEGTWGKQCVHYCSCPVESMECSRIDGN-CSCPP 367
+ G+KC +W H E+ + + N C P
Sbjct: 358 CYHGDGQSYRGTSSTTTTGKKC------QSWSSMTPHRHQKTPENYPNAGLTMNYCRNPD 411
Query: 368 GFRGAKC-------KERTCPDGLYGEGCDRTCECNVENTKLCHAVTGKCECGPGWDGLTC 420
+G C + C + +C G +G
Sbjct: 412 ADKGPWCFTTDPSVRWEYCNLKKCSGTEASVVAPPPVVLLPDVETPSEEDCMFG-NGKGY 470
Query: 421 DRPCPITRWGDNC 433
T G C
Sbjct: 471 RGKRATTVTGTPC 483
>2ddu_A Reelin; beta-jelly-roll, signaling protein; 2.05A {Mus musculus}
Length = 387
Score = 30.0 bits (66), Expect = 3.5
Identities = 13/79 (16%), Positives = 23/79 (29%), Gaps = 1/79 (1%)
Query: 580 NCAQACTCFTENSQGCDIVTGKCICRPGFKGHRCETQCSNPNTYGEDCSLDCGCNNGG-T 638
+ C + S D ++G C C G+ + + PN + +
Sbjct: 187 GVYISEPCPSYCSGHGDCISGVCFCDLGYTAAQGTCVSNTPNHSEMFDRFEGKLSPLWYK 246
Query: 639 CNQLDGGCNCGRGYQGKLC 657
G CG G+
Sbjct: 247 ITGGQVGTGCGTLNDGRSL 265
Score = 28.5 bits (62), Expect = 9.0
Identities = 29/187 (15%), Positives = 46/187 (24%), Gaps = 27/187 (14%)
Query: 234 SCQPGFTGSLCEERCPPGTHGPSCINRCRCQNGAICNPANGQCLCAPGWMGSVCNVPCTP 293
S G + L +E C P S C + + P W +P
Sbjct: 106 SHDAGMSWFLVKEGCFP----ASAGKGCEGNSRELSEPTVYYTGDFEEWTRITIAIP--- 158
Query: 294 GMWGQGCTVPCECFNGASCHHVTGECQCEPGFKGQKCMDPCPEGTWGKQCVHYCSCPVES 353
+ + + G G +PCP C + C
Sbjct: 159 -----RSLASSKTRFRWIQESSSQKNVPPFGLDGVYISEPCPS-----YCSGHGDC---- 204
Query: 354 MECSRIDGNCSCPPGFRGAKCKERTCPDGLYGEGCDRTCECNVENTKLCHAVTGKCECGP 413
I G C C G+ A+ + + + K+ CG
Sbjct: 205 -----ISGVCFCDLGYTAAQGTCVSNTPNHSEMFDRFEGKLSPLWYKITGG-QVGTGCGT 258
Query: 414 GWDGLTC 420
DG +
Sbjct: 259 LNDGRSL 265
>1n8y_C Protooncoprotein; tyrosin kinase receptor, cell surface receptor,
transferase; HET: NAG; 2.40A {Rattus norvegicus} SCOP:
c.10.2.5 c.10.2.5 g.3.9.1 g.3.9.1 PDB: 1n8z_C* 3be1_A*
1s78_A* 3mzw_A* 3n85_A* 2a91_A* 3h3b_A
Length = 608
Score = 30.0 bits (66), Expect = 3.5
Identities = 57/463 (12%), Positives = 86/463 (18%), Gaps = 24/463 (5%)
Query: 124 NTKLCVPVCTDECIRGTCIAPNTCKCEVGFGGPTCNIECPEGHYGPDCKLAC-QCENGAG 182
N P C C C + C++ G C C QC G
Sbjct: 166 NRSRACPPCAPACKDNHCWGESPEDCQILTGT-ICTSGCARCKGRLPTDCCHEQCAAGCT 224
Query: 183 CDPNTGACDCLDGYMGTHCEEVCGPGRFGQNCSQECQCRNGAECHPATGECSCQPGFTGS 242
++ CL CE C + E + P S
Sbjct: 225 GPKHSDCLACLHFNHSGICELHCPALVTYNTDTFESMHNPEGRYTFGASCVTTCPYNYLS 284
Query: 243 LCEERCPPGTHGPSCINRCRCQNGAICNPANGQCLCAPGWMGSVCNVPCTPGMWGQGCTV 302
C + + G
Sbjct: 285 TEVGSCTLVCPPNNQEVTAEDGTQRCEKCSKPCARVCYGLGMEHLRGARAITSDNVQEFD 344
Query: 303 PCECFNGASCHHVTGECQCEPGFKGQKCMDPCPEGTWGKQCVHYCSCPVESMECSRIDGN 362
C+ G + + G PE + + + + +
Sbjct: 345 GCKKIFG----SLAFLPESFDGDPSSGIAPLRPEQLQVFETLEEITGYLYISAWPDSLRD 400
Query: 363 CSCPPGFRGAKCKERTCPDGLYGEGCDRTCECNVENTKLCHAVTGKCECGPGWDGLTCDR 422
S R + R DG Y ++ L +G
Sbjct: 401 LSVFQNLRIIRG--RILHDGAYSLTLQGLGIHSLGLRSLRELGSGLALI----HRNAHLC 454
Query: 423 PCPITRWGDNCSQHCNCKNDALCFPRNGTNTYQYFFLQSLTLFTFLSLTHSGFSGRHCEK 482
W + G C
Sbjct: 455 FVHTVPWDQLFRNPHQA-----LLHSGNRPEEDCGLEGLVCNSLCAHGHCWGPGPTQCVN 509
Query: 483 PCPQGSYGQDCSQTCLCSKEGSASCSPGSGQCVCRPGGAGQLCDRPCSEGRYGQNCTQEC 542
C GQ+C + C K C P Q C G C
Sbjct: 510 -CSHFLRGQECVEECRVWKGLPREYVSDKRCLPCHPECQPQNSSETCF-GSEADQCAACA 567
Query: 543 RCMNGAACNPQDGTCLCPAGYYGPLCQKRCEFMTYGRNCAQAC 585
+ ++C + CP+G L Q C
Sbjct: 568 HYKDSSSCVAR-----CPSGVKPDLSYMPIWKYPDEEGICQPC 605
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta
propeller, protein binding-antagonist complex; HET: NAG
FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Length = 318
Score = 29.7 bits (66), Expect = 3.6
Identities = 12/65 (18%), Positives = 19/65 (29%), Gaps = 7/65 (10%)
Query: 65 WGKQCVHYCSCPVESMECSRIDGNCS----CPPGFRGAKCKERTCPDGLYGEGCDRTCEC 120
P + C +G CS P +C CP G+ +TC+
Sbjct: 253 MDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCA---CPTGVKLLENGKTCKD 309
Query: 121 NVENT 125
+
Sbjct: 310 GNSHH 314
Score = 29.7 bits (66), Expect = 3.6
Identities = 12/65 (18%), Positives = 19/65 (29%), Gaps = 7/65 (10%)
Query: 339 WGKQCVHYCSCPVESMECSRIDGNCS----CPPGFRGAKCKERTCPDGLYGEGCDRTCEC 394
P + C +G CS P +C CP G+ +TC+
Sbjct: 253 MDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCA---CPTGVKLLENGKTCKD 309
Query: 395 NVENT 399
+
Sbjct: 310 GNSHH 314
Score = 28.5 bits (63), Expect = 8.3
Identities = 15/81 (18%), Positives = 22/81 (27%), Gaps = 15/81 (18%)
Query: 236 QPGFTGSLCEERCPPGTHGPSCINRCRCQNGAICNPANG--QCLCAPGWMGSVCNVPCTP 293
P + ++R P T+ N C + + +P QC C G C
Sbjct: 251 SPMDIHAFSQQRQPNATNPCGIDN-GGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKD 309
Query: 294 GMWGQGCTVPCECFNGASCHH 314
G HH
Sbjct: 310 G---------NSH---HHHHH 318
>2c42_A Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, iron-sulfur,
iron-sulfur cluster, pyruvate catabolism, TPP-dependent
enzyme; HET: TPP; 1.78A {Desulfovibrio africanus} SCOP:
c.36.1.8 c.36.1.12 c.48.1.3 c.64.1.1 d.58.1.5 PDB:
1b0p_A* 1kek_A* 2c3o_A* 2c3p_A* 2c3u_A* 2c3y_A* 2c3m_A*
2pda_A* 2uza_A*
Length = 1231
Score = 29.8 bits (67), Expect = 4.9
Identities = 18/69 (26%), Positives = 22/69 (31%), Gaps = 13/69 (18%)
Query: 1 MECVPVCTDECIRGTCIAPNTCKCEVGFGGPTCNIAKDAKTKPTDTYTFRL-MFPQ---- 55
+C VC I E G P A +AK K Y FR+ +
Sbjct: 692 NQCAFVCPHSAILPVLAKE-----EELVGAPANFTALEAKGKELKGYKFRIQINTLDCMG 746
Query: 56 ---CMDPCP 61
C D CP
Sbjct: 747 CGNCADICP 755
>3ca7_A Protein spitz; argos, EGF, developmental protein, differentiation,
EGF-like domain, endoplasmic reticulum, glycoprotein,
golgi apparatus; 1.50A {Drosophila melanogaster} PDB:
3c9a_C 3ltg_D
Length = 52
Score = 26.4 bits (58), Expect = 4.9
Identities = 9/44 (20%), Positives = 15/44 (34%)
Query: 528 PCSEGRYGQNCTQECRCMNGAACNPQDGTCLCPAGYYGPLCQKR 571
C E C + C + +C C G+ G C+ +
Sbjct: 6 KCPETFDAWYCLNDAHCFAVKIADLPVYSCECAIGFMGQRCEYK 49
Score = 26.0 bits (57), Expect = 8.4
Identities = 13/41 (31%), Positives = 17/41 (41%)
Query: 247 RCPPGTHGPSCINRCRCQNGAICNPANGQCLCAPGWMGSVC 287
+CP C+N C I + C CA G+MG C
Sbjct: 6 KCPETFDAWYCLNDAHCFAVKIADLPVYSCECAIGFMGQRC 46
Score = 26.0 bits (57), Expect = 8.4
Identities = 13/41 (31%), Positives = 17/41 (41%)
Query: 741 RCPPGTHGPSCINRCRCQNGAICNPANGQCLCAPGWMGSVC 781
+CP C+N C I + C CA G+MG C
Sbjct: 6 KCPETFDAWYCLNDAHCFAVKIADLPVYSCECAIGFMGQRC 46
>1haq_A Complement factor H; immunology, glycoprotein, complement alternate
pathway, SCR, CCP; NMR {Homo sapiens} PDB: 3gau_A 3gav_A
3gaw_A 2qfh_A 2qfg_A 1hfh_A 2kms_A 1hfi_A 1hcc_A
Length = 1213
Score = 29.7 bits (66), Expect = 4.9
Identities = 35/256 (13%), Positives = 59/256 (23%), Gaps = 23/256 (8%)
Query: 49 FRLMFPQCMDPCPEGTWGK--QCVHYCSCPVESMECSRIDGNCSCPPGFRGAKCKERTCP 106
+ L Q C E W +C+ +C S++ + S K + C
Sbjct: 402 YALPKAQTTVTCMENGWSPTPRCIRVKTCSKSSIDIENGFISESQYTYALKEKA-KYQCK 460
Query: 107 DGLYGEGCDRTCECNVENTKLCVPVCTDECIRGTCIAPNTCKCEVGF--GGPTCNIECPE 164
G + + + K + + T + EC +
Sbjct: 461 LGYVTADGETSGSIRCGKDGWSAQPTCIKSCDIPVFMNARTKNDFTWFKLNDTLDYECHD 520
Query: 165 GHYGPDCKLACQCENGAGCDPNTGACDCLDGYMGTHCEEVCGPGRFGQNCSQECQCRNGA 224
G+ G + C E C + + +
Sbjct: 521 GYESNTGSTTGSIVCGYNGWSDLPIC----------YERECELPKIDVH--LVPDRKKDQ 568
Query: 225 ECHPATGECSCQPGFTGSLCEERC--PPGTHGPSCINRCR-CQNGAICNPANGQCLCAPG 281
+ SC+PGFT G I + + G NG
Sbjct: 569 YKVGEVLKFSCKPGFTIVGPNSVQCYHFGLSPDLPICKEQVQSCGPPPELLNGNVKEKTK 628
Query: 282 WM---GSVCNVPCTPG 294
V C P
Sbjct: 629 EEYGHSEVVEYYCNPR 644
>3tbd_A Netrin-G2, laminet-2; laminin N-terminal domain, domain VI,
LE-domain, N neuronal cell adhesion molecule, netrin G
ligand 2, nervous system; HET: NAG; 1.80A {Homo sapiens}
PDB: 3zyg_A* 3zyi_B*
Length = 338
Score = 29.1 bits (64), Expect = 5.4
Identities = 17/110 (15%), Positives = 27/110 (24%), Gaps = 7/110 (6%)
Query: 102 ERTCPDGLYGEGCDRTCECNVENTKLCVPVCTDECIRGTCIAPNTCKCEVGFGGPTCNIE 161
+R +E+ K T +R + P V +
Sbjct: 200 DRFAIFAGPDLRNMDNLYTRLESAKGLKEFFTLTDLRMRLLRPALGGTYVQRENLY---K 256
Query: 162 CPEGHYGPDCKLACQCENGA-GCDPNTG--ACDCLDGYMGTHCEEVCGPG 208
+ C+C A C G C+C G C + C
Sbjct: 257 YFYAISNIEVIGRCKCNLHANLCSMREGSLQCECEHNTTGPDCGK-CKKN 305
>1hae_A Heregulin-alpha; growth factor; NMR {Homo sapiens} SCOP: g.3.11.1
PDB: 1haf_A 1hre_A 1hrf_A
Length = 63
Score = 26.6 bits (58), Expect = 6.8
Identities = 17/38 (44%), Positives = 19/38 (50%), Gaps = 7/38 (18%)
Query: 220 CRNGAECH-------PATGECSCQPGFTGSLCEERCPP 250
C NG EC P+ C CQPGFTG+ C E P
Sbjct: 14 CVNGGECFMVKDLSNPSRYLCKCQPGFTGARCTENVPM 51
>2p26_A Integrin beta-2; hybrid domain, PSI domain, I-EGF DOM cell
adhesion; HET: NAG; 1.75A {Homo sapiens} PDB: 1yuk_B*
1yuk_A* 2p28_A*
Length = 280
Score = 28.7 bits (63), Expect = 8.1
Identities = 21/94 (22%), Positives = 32/94 (34%), Gaps = 17/94 (18%)
Query: 579 RNCAQACTCFTENSQGC----DIVTGKCICRPGFKGHRCETQCSNPNTYGEDCSLDCG-- 632
C C + + C + G C C G+ G CE Q ++ + S
Sbjct: 182 PQCECRCRDQSRDRSLCHGKGFLECGICRCDTGYIGKNCECQTQGRSSQELEGSCRKDNN 241
Query: 633 ---CNNGGTCNQLDGGCNC------GRGYQGKLC 657
C+ G C + G C C G+ G+ C
Sbjct: 242 SIICSGLGDC--VCGQCLCHTSDVPGKLIYGQYC 273
>1dyk_A Laminin alpha 2 chain; metal binding protein; 2.0A {Mus musculus}
SCOP: b.29.1.4 b.29.1.4 PDB: 1okq_A 1qu0_A
Length = 394
Score = 28.8 bits (64), Expect = 8.7
Identities = 7/34 (20%), Positives = 9/34 (26%)
Query: 480 CEKPCPQGSYGQDCSQTCLCSKEGSASCSPGSGQ 513
P P + C E + GS Q
Sbjct: 4 ASVPTPAFPFPVPTMVHGPCVAESEPALLTGSKQ 37
>2oo4_A Notch 2, neurogenic locus notch homolog protein 2, HN2, notch2,
NOTC2; alpha-beta-sandwich, SEA domain, LNR, LIN12 notch
repeat, CY rich, HD domain; 2.00A {Homo sapiens}
Length = 234
Score = 28.2 bits (62), Expect = 9.1
Identities = 21/117 (17%), Positives = 42/117 (35%), Gaps = 9/117 (7%)
Query: 254 GPSCINR---CRCQNGAICNPANGQCLCAPGWMGSVCNVPCTPGMWGQGCTVPCECFNGA 310
G +C+++ + ++G +C+ A C W G C++ +PC +
Sbjct: 1 GATCLSQYCADKARDG-VCDEACNSHAC--QWDGGDCSLTMENPWANCSSPLPCWDYINN 57
Query: 311 SCHHVTGECQCE-PGFKGQKCMDPCPEGTWGKQCVH--YCSCPVESMECSRIDGNCS 364
C + +C F+ Q C + +C+ S EC +C+
Sbjct: 58 QCDELCNTVECLFDNFECQGNSKTCKYDKYCADHFKDNHCNQGCNSEECGWDGLDCA 114
>2jtk_A Dickkopf-related protein 2; domain, developmental protein,
glycoprotein, secreted, WNT signaling pathway, signaling
protein; NMR {Mus musculus}
Length = 90
Score = 26.7 bits (58), Expect = 9.2
Identities = 18/70 (25%), Positives = 25/70 (35%), Gaps = 1/70 (1%)
Query: 206 GPGRFGQNCSQECQCRNGAECHPATGECSCQP-GFTGSLCEERCPPGTHGPSCINRCRCQ 264
G G C + C +G C C+P G +C ++ G+HG RC C
Sbjct: 6 IKGHEGDPCLRSSDCIDGFCCARHFWTKICKPVLHQGEVCTKQRKKGSHGLEIFQRCDCA 65
Query: 265 NGAICNPANG 274
G C
Sbjct: 66 KGLSCKVWKD 75
>1wb0_A Chitinase 1, chitotriosidase 1; cyclopentapeptide inhibitors,
chitinase inhibitors, carbohyd metabolism, chitin
degradation, chitin-binding; HET: VR0 MEA; 1.65A {Homo
sapiens} SCOP: c.1.8.5 d.26.3.1 PDB: 1waw_A* 1guv_A
1lg2_A 1lg1_A 1lq0_A 1hki_A* 1hkj_A* 1hkm_A* 1hkk_A*
Length = 445
Score = 28.5 bits (64), Expect = 9.8
Identities = 15/106 (14%), Positives = 23/106 (21%), Gaps = 15/106 (14%)
Query: 95 FRGAKCKERTCP------DGLYGEGCDRTCECNVENTKLCVPVCTDECIRGTCIAPNTCK 148
F G C + P L + +E K P + K
Sbjct: 344 FAGFSCNQGRYPLIQTLRQEL-SLPYLPSGTPELEVPKPGQPSEPEHGPSPGQDTFCQGK 402
Query: 149 CEVGFGGPT-CN--IECPEGHYGPDCKLACQCENGAGCDPNTGACD 191
+ + P + C G C G + C
Sbjct: 403 ADGLYPNPRERSSFYSCAAGRLFQQS-----CPTGLVFSNSCKCCT 443
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.141 0.525
Gapped
Lambda K H
0.267 0.0564 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 13,091,139
Number of extensions: 876863
Number of successful extensions: 10568
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4303
Number of HSP's successfully gapped: 1717
Length of query: 823
Length of database: 6,701,793
Length adjustment: 102
Effective length of query: 721
Effective length of database: 3,853,851
Effective search space: 2778626571
Effective search space used: 2778626571
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 61 (27.6 bits)