RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy6207
(823 letters)
>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia
pseudotuberculosis [TaxId: 633]}
Length = 356
Score = 33.3 bits (74), Expect = 0.11
Identities = 18/246 (7%), Positives = 42/246 (17%)
Query: 119 ECNVENTKLCVPVCTDECIRGTCIAPNTCKCEVGFGGPTCNIECPEGHYGPDCKLACQCE 178
++ + + + + + P +
Sbjct: 62 IGDIRDQNKLLESIREFQPEIVFHMAAQPLVRLSYSEPVETYSTNVMGTVYLLEAIRHVG 121
Query: 179 NGAGCDPNTGACDCLDGYMGTHCEEVCGPGRFGQNCSQECQCRNGAECHPATGECSCQPG 238
T + E G + + + + + G
Sbjct: 122 GVKAVVNITSDKCYDNKEWIWGYRENEAMGGYDPYSNSKGCAELVTSSYRNSFFNPANYG 181
Query: 239 FTGSLCEERCPPGTHGPSCINRCRCQNGAICNPANGQCLCAPGWMGSVCNVPCTPGMWGQ 298
G+ G R + Q + + G
Sbjct: 182 QHGTAVATVRAGNVIGGGDWALDRIVPDILRAFEQSQPVIIRNPHAIRPWQHVLEPLSGY 241
Query: 299 GCTVPCECFNGASCHHVTGECQCEPGFKGQKCMDPCPEGTWGKQCVHYCSCPVESMECSR 358
+GA + K + WG+ E
Sbjct: 242 LLLAQKLYTDGAEYAEGWNFGPNDADATPVKNIVEQMVKYWGEGASWQLDGNAHPHEAHY 301
Query: 359 IDGNCS 364
+ +CS
Sbjct: 302 LKLDCS 307
>d1kloa3 g.3.11.2 (A:122-172) Laminin gamma1 chain {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 51
Score = 27.2 bits (60), Expect = 0.91
Identities = 14/50 (28%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
Query: 213 NCSQECQCRNGAECHPATGECSCQPGFTGSLCEERCPPGTHGPSCINRCR 262
C+ + + C+P TG+C C P +G C C PG + C
Sbjct: 2 ACNPYGTVQQQSSCNPVTGQCQCLPHVSGRDC-GTCDPGYYNLQSGQGCE 50
Score = 27.2 bits (60), Expect = 0.99
Identities = 15/50 (30%), Positives = 20/50 (40%), Gaps = 1/50 (2%)
Query: 170 DCKLACQCENGAGCDPNTGACDCLDGYMGTHCEEVCGPGRFGQNCSQECQ 219
C + + C+P TG C CL G C C PG + Q C+
Sbjct: 2 ACNPYGTVQQQSSCNPVTGQCQCLPHVSGRDCGT-CDPGYYNLQSGQGCE 50
Score = 26.4 bits (58), Expect = 2.2
Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 5/51 (9%)
Query: 497 CLCSKEGSAS----CSPGSGQCVCRPGGAGQLCDRPCSEGRYGQNCTQECR 543
C C+ G+ C+P +GQC C P +G+ C C G Y Q C
Sbjct: 1 CACNPYGTVQQQSSCNPVTGQCQCLPHVSGRDCGT-CDPGYYNLQSGQGCE 50
>d1tzza2 d.54.1.1 (A:1006-1145) Hypothetical protein Bll6730
{Bradyrhizobium japonicum [TaxId: 375]}
Length = 140
Score = 29.1 bits (64), Expect = 1.2
Identities = 9/88 (10%), Positives = 14/88 (15%), Gaps = 4/88 (4%)
Query: 285 SVCNVPCTPGMWGQGCTVPCECFNGASCHHVTGECQCEPGFKGQKCMDPCPEGTWGKQCV 344
S+ V G+ NG + G
Sbjct: 30 SLVAVVTDVVREGKRVVGYGFNSNGRYGQGGLIRERFASRILEADPK--KLLNEAGDNLD 87
Query: 345 HYCSCPVESMECSRIDGNCSCPPGFRGA 372
+M + G G
Sbjct: 88 PDKVW--AAMMINEKPGGHGERSVAVGT 113
>d2nxyb2 b.1.1.3 (B:1098-1181) CD4 C2-set domains {Human (Homo
sapiens) [TaxId: 9606]}
Length = 84
Score = 27.7 bits (60), Expect = 1.5
Identities = 7/65 (10%), Positives = 10/65 (15%), Gaps = 4/65 (6%)
Query: 535 GQNCTQECRCMNGAACNPQDGTCLCPAGYYGPLCQKRCEFMTYGRNCAQACTCFTENSQG 594
GQ+ T K + TC +Q
Sbjct: 14 GQSLTLTLESP----PGSSPSVQCRSPRGKNIQGGKTLSVSQLELQDSGTWTCTVLQNQK 69
Query: 595 CDIVT 599
Sbjct: 70 KVEFK 74
>d1edmb_ g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens) [TaxId:
9606]}
Length = 39
Score = 26.2 bits (58), Expect = 1.8
Identities = 12/28 (42%), Positives = 12/28 (42%), Gaps = 2/28 (7%)
Query: 220 CRNGAECHPATG--ECSCQPGFTGSLCE 245
C NG C EC C GF G CE
Sbjct: 11 CLNGGSCKDDINSYECWCPFGFEGKNCE 38
Score = 25.8 bits (57), Expect = 2.0
Identities = 10/28 (35%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
Query: 544 CMNGAACNPQDG--TCLCPAGYYGPLCQ 569
C+NG +C C CP G+ G C+
Sbjct: 11 CLNGGSCKDDINSYECWCPFGFEGKNCE 38
Score = 25.0 bits (55), Expect = 4.5
Identities = 11/27 (40%), Positives = 14/27 (51%), Gaps = 2/27 (7%)
Query: 633 CNNGGTCNQLDGG--CNCGRGYQGKLC 657
C NGG+C C C G++GK C
Sbjct: 11 CLNGGSCKDDINSYECWCPFGFEGKNC 37
>d1xkba1 g.3.11.1 (A:48-86) Factor X, N-terminal module {Human (Homo
sapiens) [TaxId: 9606]}
Length = 39
Score = 25.8 bits (57), Expect = 2.1
Identities = 11/28 (39%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
Query: 220 CRNGAECHPATG--ECSCQPGFTGSLCE 245
C+N +C G C+C GF G CE
Sbjct: 8 CQNQGKCKDGLGEYTCTCLEGFEGKNCE 35
Score = 25.4 bits (56), Expect = 3.1
Identities = 10/28 (35%), Positives = 12/28 (42%), Gaps = 2/28 (7%)
Query: 544 CMNGAACNPQDG--TCLCPAGYYGPLCQ 569
C N C G TC C G+ G C+
Sbjct: 8 CQNQGKCKDGLGEYTCTCLEGFEGKNCE 35
Score = 24.7 bits (54), Expect = 5.7
Identities = 11/27 (40%), Positives = 13/27 (48%), Gaps = 2/27 (7%)
Query: 633 CNNGGTCNQLDGG--CNCGRGYQGKLC 657
C N G C G C C G++GK C
Sbjct: 8 CQNQGKCKDGLGEYTCTCLEGFEGKNC 34
>d2vj3a2 g.3.11.1 (A:453-491) Neurogenic locus notch homolog protein
1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 39
Score = 25.8 bits (57), Expect = 2.3
Identities = 12/28 (42%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
Query: 220 CRNGAECHPATG--ECSCQPGFTGSLCE 245
C+N A C G +C C PG+ G CE
Sbjct: 9 CQNDATCLDQIGEFQCICMPGYEGVHCE 36
Score = 25.4 bits (56), Expect = 2.8
Identities = 12/28 (42%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
Query: 544 CMNGAACNPQDG--TCLCPAGYYGPLCQ 569
C N A C Q G C+C GY G C+
Sbjct: 9 CQNDATCLDQIGEFQCICMPGYEGVHCE 36
Score = 24.6 bits (54), Expect = 5.6
Identities = 11/27 (40%), Positives = 12/27 (44%), Gaps = 2/27 (7%)
Query: 633 CNNGGTCNQLDGG--CNCGRGYQGKLC 657
C N TC G C C GY+G C
Sbjct: 9 CQNDATCLDQIGEFQCICMPGYEGVHC 35
>d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase
domain {Thermus thermophilus [TaxId: 274]}
Length = 182
Score = 28.2 bits (62), Expect = 3.1
Identities = 13/87 (14%), Positives = 25/87 (28%), Gaps = 4/87 (4%)
Query: 4 VPVCTDECIRGTCIAPNTC--KCEVGFGGPTCNIAKD-AKTKPTDTYTFRLMFPQCMDPC 60
VPV E + + P +G G I + + D + + +
Sbjct: 3 VPVLYQEALDLLAVRPGGVYVDATLGGAGHARGILERGGRVIGLDQDPEAVARAKGLHLP 62
Query: 61 PEGTWGKQCVHYCSCPVESMECSRIDG 87
H + ++ R+DG
Sbjct: 63 GLTVVQGNFRHLKRH-LAALGVERVDG 88
Score = 27.0 bits (59), Expect = 6.2
Identities = 16/91 (17%), Positives = 21/91 (23%), Gaps = 15/91 (16%)
Query: 129 VPVCTDECIRGTCIAPNTC--KCEVGFGGPTCNIECPEGHYGPDCKLACQCENGAGCDPN 186
VPV E + + P +G G I G G D +
Sbjct: 3 VPVLYQEALDLLAVRPGGVYVDATLGGAGHARGILERGGRVI-------------GLDQD 49
Query: 187 TGACDCLDGYMGTHCEEVCGPGRFGQNCSQE 217
A G V G R +
Sbjct: 50 PEAVARAKGLHLPGLTVVQGNFRHLKRHLAA 80
>d1g1ta2 g.3.11.1 (A:119-157) E-selectin, EGF-domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 39
Score = 25.1 bits (55), Expect = 3.8
Identities = 11/29 (37%), Positives = 13/29 (44%), Gaps = 2/29 (6%)
Query: 220 CRNGAECHPATG--ECSCQPGFTGSLCEE 246
C EC C C PGF+G CE+
Sbjct: 9 CSGHGECVETINNYTCKCDPGFSGLKCEQ 37
>d2vj3a1 g.3.11.1 (A:411-452) Neurogenic locus notch homolog protein
1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 42
Score = 25.5 bits (56), Expect = 3.8
Identities = 11/28 (39%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
Query: 220 CRNGAECHPATG--ECSCQPGFTGSLCE 245
C + +C G EC C G+TG CE
Sbjct: 13 CEHAGKCINTLGSFECQCLQGYTGPRCE 40
Score = 25.1 bits (55), Expect = 5.0
Identities = 10/28 (35%), Positives = 12/28 (42%), Gaps = 2/28 (7%)
Query: 544 CMNGAACNPQDG--TCLCPAGYYGPLCQ 569
C + C G C C GY GP C+
Sbjct: 13 CEHAGKCINTLGSFECQCLQGYTGPRCE 40
Score = 24.3 bits (53), Expect = 8.8
Identities = 10/27 (37%), Positives = 12/27 (44%), Gaps = 2/27 (7%)
Query: 633 CNNGGTCNQLDGG--CNCGRGYQGKLC 657
C + G C G C C +GY G C
Sbjct: 13 CEHAGKCINTLGSFECQCLQGYTGPRC 39
>d1haea_ g.3.11.1 (A:) Heregulin-alpha, EGF-like domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 63
Score = 26.1 bits (57), Expect = 3.9
Identities = 16/44 (36%), Positives = 17/44 (38%), Gaps = 7/44 (15%)
Query: 220 CRNGAECHPATGE-------CSCQPGFTGSLCEERCPPGTHGPS 256
C NG EC C CQPGFTG+ C E P
Sbjct: 14 CVNGGECFMVKDLSNPSRYLCKCQPGFTGARCTENVPMKVQNQE 57
>d2c4fl1 g.3.11.1 (L:46-82) Factor IX (IXa) {Pig (Sus scrofa)
[TaxId: 9823]}
Length = 37
Score = 25.0 bits (55), Expect = 4.4
Identities = 9/28 (32%), Positives = 12/28 (42%), Gaps = 2/28 (7%)
Query: 544 CMNGAACNPQDG--TCLCPAGYYGPLCQ 569
C NG +C Q C C + G C+
Sbjct: 10 CQNGGSCKDQLQSYICFCLPAFEGRNCE 37
Score = 25.0 bits (55), Expect = 4.4
Identities = 11/28 (39%), Positives = 12/28 (42%), Gaps = 2/28 (7%)
Query: 220 CRNGAECHPATG--ECSCQPGFTGSLCE 245
C+NG C C C P F G CE
Sbjct: 10 CQNGGSCKDQLQSYICFCLPAFEGRNCE 37
Score = 24.3 bits (53), Expect = 8.8
Identities = 9/27 (33%), Positives = 13/27 (48%), Gaps = 2/27 (7%)
Query: 633 CNNGGTCNQLDGG--CNCGRGYQGKLC 657
C NGG+C C C ++G+ C
Sbjct: 10 CQNGGSCKDQLQSYICFCLPAFEGRNC 36
>d2ciba1 a.104.1.1 (A:5-449) Cytochrome p450 14 alpha-sterol
demethylase (cyp51) {Mycobacterium tuberculosis [TaxId:
1773]}
Length = 445
Score = 28.3 bits (61), Expect = 4.9
Identities = 16/236 (6%), Positives = 37/236 (15%)
Query: 388 CDRTCECNVENTKLCHAVTGKCECGPGWDGLTCDRPCPITRWGDNCSQHCNCKNDALCFP 447
+ +L + C G + R + + + + L
Sbjct: 126 EAGEIDLLDFFAELTIYTSSACLIGKKFRDQLDGRFAKLYHELERGTDPLAYVDPYLPIE 185
Query: 448 RNGTNTYQYFFLQSLTLFTFLSLTHSGFSGRHCEKPCPQGSYGQDCSQTCLCSKEGSASC 507
L +L + + + + + T S +
Sbjct: 186 SFRRRDEARNGLVALVADIMNGRIANPPTDKSDRDMLDVLIAVKAETGTPRFSADEITGM 245
Query: 508 SPGSGQCVCRPGGAGQLCDRPCSEGRYGQNCTQECRCMNGAACNPQDGTCLCPAGYYGPL 567
Sbjct: 246 FISMMFAGHHTSSGTASWTLIELMRHRDAYAAVIDELDELYGDGRSVSFHALRQIPQLEN 305
Query: 568 CQKRCEFMTYGRNCAQACTCFTENSQGCDIVTGKCICRPGFKGHRCETQCSNPNTY 623
K + QG I G + +R +P+ +
Sbjct: 306 VLKETLRLHPPLIILMRVAKGEFEVQGHRIHEGDLVAASPAISNRIPEDFPDPHDF 361
>d2vj3a3 g.3.11.1 (A:492-526) Neurogenic locus notch homolog protein
1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 35
Score = 24.6 bits (54), Expect = 5.6
Identities = 10/28 (35%), Positives = 13/28 (46%), Gaps = 2/28 (7%)
Query: 220 CRNGAECHPATG--ECSCQPGFTGSLCE 245
C + C +C C GFTG LC+
Sbjct: 8 CLHNGRCLDKINEFQCECPTGFTGHLCQ 35
Score = 24.2 bits (53), Expect = 7.0
Identities = 10/28 (35%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
Query: 544 CMNGAACNPQDG--TCLCPAGYYGPLCQ 569
C++ C + C CP G+ G LCQ
Sbjct: 8 CLHNGRCLDKINEFQCECPTGFTGHLCQ 35
>d3egfa_ g.3.11.1 (A:) Epidermal growth factor, EGF {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 53
Score = 24.8 bits (54), Expect = 6.6
Identities = 15/45 (33%), Positives = 17/45 (37%), Gaps = 10/45 (22%)
Query: 537 NCTQECR------CMNGAACNPQDG----TCLCPAGYYGPLCQKR 571
N C C+NG C + TC C GY G CQ R
Sbjct: 1 NSYPGCPSSYDGYCLNGGVCMHIESLDSYTCNCVIGYSGDRCQTR 45
>d2hava1 c.94.1.2 (A:340-664) Transferrin {Rabbit (Oryctolagus
cuniculus) [TaxId: 9986]}
Length = 325
Score = 27.4 bits (60), Expect = 8.5
Identities = 17/65 (26%), Positives = 21/65 (32%), Gaps = 8/65 (12%)
Query: 617 CSNPNTYGEDCSLDCGCNNGGTCNQLDGGCNCGRGYQGKLCTAPCPEGQYGYNCKEECLT 676
C + E C G + +L G LC EG YGY CL
Sbjct: 135 CRFDEFFSEGC--APGSKKDSSLCKLCMGSGL------NLCEPNNKEGYYGYTGAFRCLV 186
Query: 677 KGQDV 681
+ DV
Sbjct: 187 EKGDV 191
>d1g1sa2 g.3.11.1 (A:119-158) E-selectin, EGF-domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 40
Score = 24.0 bits (52), Expect = 9.9
Identities = 13/29 (44%), Positives = 13/29 (44%), Gaps = 2/29 (6%)
Query: 220 CRNGAECHPATG--ECSCQPGFTGSLCEE 246
C EC G CSC PGF G CE
Sbjct: 9 CSKQGECLETIGNYTCSCYPGFYGPECEY 37
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.141 0.525
Gapped
Lambda K H
0.267 0.0627 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 3,530,979
Number of extensions: 212396
Number of successful extensions: 2796
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1917
Number of HSP's successfully gapped: 758
Length of query: 823
Length of database: 2,407,596
Length adjustment: 93
Effective length of query: 730
Effective length of database: 1,130,706
Effective search space: 825415380
Effective search space used: 825415380
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 57 (26.0 bits)