BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6208
(197 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3HU2|A Chain A, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|B Chain B, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|C Chain C, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|D Chain D, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|E Chain E, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|F Chain F, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
Length = 489
Score = 360 bits (925), Expect = e-100, Method: Compositional matrix adjust.
Identities = 171/192 (89%), Positives = 184/192 (95%)
Query: 6 EGEMSNLFEVYLKPYFLEAYRPVHKDDLFIVRGGMRAVEFKIVDTDPAPYCIVAADTVIH 65
EG NLFEVYLKPYFLEAYRP+ K D+F+VRGGMRAVEFK+V+TDP+PYCIVA DTVIH
Sbjct: 124 EGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDTVIH 183
Query: 66 CEGDPIKREEEEEASNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILL 125
CEG+PIKRE+EEE+ N VGYDDIGGCRKQLAQIKEMVELPLRHP+LFKAIGVKPPRGILL
Sbjct: 184 CEGEPIKREDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILL 243
Query: 126 YGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPSIIFI 185
YGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEA+KN+P+IIFI
Sbjct: 244 YGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFI 303
Query: 186 DELDAIAPKREK 197
DELDAIAPKREK
Sbjct: 304 DELDAIAPKREK 315
>pdb|3HU1|A Chain A, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|B Chain B, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|C Chain C, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|D Chain D, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|E Chain E, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|F Chain F, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
Length = 489
Score = 360 bits (925), Expect = e-100, Method: Compositional matrix adjust.
Identities = 171/192 (89%), Positives = 184/192 (95%)
Query: 6 EGEMSNLFEVYLKPYFLEAYRPVHKDDLFIVRGGMRAVEFKIVDTDPAPYCIVAADTVIH 65
EG NLFEVYLKPYFLEAYRP+ K D+F+VRGGMRAVEFK+V+TDP+PYCIVA DTVIH
Sbjct: 124 EGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDTVIH 183
Query: 66 CEGDPIKREEEEEASNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILL 125
CEG+PIKRE+EEE+ N VGYDDIGGCRKQLAQIKEMVELPLRHP+LFKAIGVKPPRGILL
Sbjct: 184 CEGEPIKREDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILL 243
Query: 126 YGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPSIIFI 185
YGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEA+KN+P+IIFI
Sbjct: 244 YGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFI 303
Query: 186 DELDAIAPKREK 197
DELDAIAPKREK
Sbjct: 304 DELDAIAPKREK 315
>pdb|1E32|A Chain A, Structure Of The N-Terminal Domain And The D1 Aaa Domain
Of Membrane Fusion Atpase P97
pdb|1S3S|A Chain A, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|B Chain B, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|C Chain C, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|D Chain D, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|E Chain E, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|F Chain F, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
Length = 458
Score = 360 bits (923), Expect = e-100, Method: Compositional matrix adjust.
Identities = 170/192 (88%), Positives = 184/192 (95%)
Query: 6 EGEMSNLFEVYLKPYFLEAYRPVHKDDLFIVRGGMRAVEFKIVDTDPAPYCIVAADTVIH 65
EG NLFEVYLKPYFLEAYRP+ K D+F+VRGGMRAVEFK+V+TDP+PYCIVA DTVIH
Sbjct: 124 EGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDTVIH 183
Query: 66 CEGDPIKREEEEEASNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILL 125
CEG+PIKRE+EEE+ N VGYDD+GGCRKQLAQIKEMVELPLRHP+LFKAIGVKPPRGILL
Sbjct: 184 CEGEPIKREDEEESLNEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILL 243
Query: 126 YGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPSIIFI 185
YGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEA+KN+P+IIFI
Sbjct: 244 YGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFI 303
Query: 186 DELDAIAPKREK 197
DELDAIAPKREK
Sbjct: 304 DELDAIAPKREK 315
>pdb|3CF1|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF2|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|D Chain D, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF3|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADP
Length = 806
Score = 359 bits (922), Expect = e-100, Method: Compositional matrix adjust.
Identities = 171/192 (89%), Positives = 184/192 (95%)
Query: 6 EGEMSNLFEVYLKPYFLEAYRPVHKDDLFIVRGGMRAVEFKIVDTDPAPYCIVAADTVIH 65
EG NLFEVYLKPYFLEAYRP+ K D+F+VRGGMRAVEFK+V+TDP+PYCIVA DTVIH
Sbjct: 124 EGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDTVIH 183
Query: 66 CEGDPIKREEEEEASNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILL 125
CEG+PIKRE+EEE+ N VGYDDIGGCRKQLAQIKEMVELPLRHP+LFKAIGVKPPRGILL
Sbjct: 184 CEGEPIKREDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILL 243
Query: 126 YGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPSIIFI 185
YGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEA+KN+P+IIFI
Sbjct: 244 YGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFI 303
Query: 186 DELDAIAPKREK 197
DELDAIAPKREK
Sbjct: 304 DELDAIAPKREK 315
Score = 117 bits (294), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 52/113 (46%), Positives = 79/113 (69%)
Query: 83 VGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 142
V ++DIGG +++E+V+ P+ HP F G+ P +G+L YGPPG GKTL+A+A+AN
Sbjct: 474 VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIAN 533
Query: 143 ETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPSIIFIDELDAIAPKR 195
E A F I GPE+++ GESE+N+R+ F++A + +P ++F DELD+IA R
Sbjct: 534 ECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKAR 586
>pdb|1R7R|A Chain A, The Crystal Structure Of Murine P97VCP AT 3.6A
Length = 816
Score = 359 bits (921), Expect = e-100, Method: Compositional matrix adjust.
Identities = 170/192 (88%), Positives = 184/192 (95%)
Query: 6 EGEMSNLFEVYLKPYFLEAYRPVHKDDLFIVRGGMRAVEFKIVDTDPAPYCIVAADTVIH 65
EG NLFEVYLKPYFLEAYRP+ K D+F+VRGGMRAVEFK+V+TDP+PYCIVA DTVIH
Sbjct: 124 EGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDTVIH 183
Query: 66 CEGDPIKREEEEEASNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILL 125
CEG+PIKRE+EEE+ N VGYDD+GGCRKQLAQIKEMVELPLRHP+LFKAIGVKPPRGILL
Sbjct: 184 CEGEPIKREDEEESLNEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILL 243
Query: 126 YGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPSIIFI 185
YGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEA+KN+P+IIFI
Sbjct: 244 YGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFI 303
Query: 186 DELDAIAPKREK 197
DELDAIAPKREK
Sbjct: 304 DELDAIAPKREK 315
Score = 117 bits (294), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 52/113 (46%), Positives = 79/113 (69%)
Query: 83 VGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 142
V ++DIGG +++E+V+ P+ HP F G+ P +G+L YGPPG GKTL+A+A+AN
Sbjct: 474 VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIAN 533
Query: 143 ETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPSIIFIDELDAIAPKR 195
E A F I GPE+++ GESE+N+R+ F++A + +P ++F DELD+IA R
Sbjct: 534 ECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKAR 586
>pdb|3HU3|A Chain A, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
pdb|3HU3|B Chain B, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
Length = 489
Score = 358 bits (919), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 170/192 (88%), Positives = 183/192 (95%)
Query: 6 EGEMSNLFEVYLKPYFLEAYRPVHKDDLFIVRGGMRAVEFKIVDTDPAPYCIVAADTVIH 65
EG NLFEVYLKPYFLEAYRP+ K D+F+V GGMRAVEFK+V+TDP+PYCIVA DTVIH
Sbjct: 124 EGITGNLFEVYLKPYFLEAYRPIRKGDIFLVHGGMRAVEFKVVETDPSPYCIVAPDTVIH 183
Query: 66 CEGDPIKREEEEEASNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILL 125
CEG+PIKRE+EEE+ N VGYDDIGGCRKQLAQIKEMVELPLRHP+LFKAIGVKPPRGILL
Sbjct: 184 CEGEPIKREDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILL 243
Query: 126 YGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPSIIFI 185
YGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEA+KN+P+IIFI
Sbjct: 244 YGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFI 303
Query: 186 DELDAIAPKREK 197
DELDAIAPKREK
Sbjct: 304 DELDAIAPKREK 315
>pdb|2PJH|B Chain B, Strctural Model Of The P97 N Domain- Npl4 Ubd Complex
Length = 193
Score = 160 bits (405), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 72/90 (80%), Positives = 82/90 (91%)
Query: 6 EGEMSNLFEVYLKPYFLEAYRPVHKDDLFIVRGGMRAVEFKIVDTDPAPYCIVAADTVIH 65
EG NLFEVYLKPYFLEAYRP+ K D+F+VRGGMRAVEFK+V+TDP+PYCIVA DTVIH
Sbjct: 104 EGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDTVIH 163
Query: 66 CEGDPIKREEEEEASNAVGYDDIGGCRKQL 95
CEG+PIKRE+EEE+ N VGYDD+GGCRKQL
Sbjct: 164 CEGEPIKREDEEESLNEVGYDDVGGCRKQL 193
>pdb|3QWZ|A Chain A, Crystal Structure Of Faf1 Ubx-P97n-Domain Complex
Length = 211
Score = 148 bits (373), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 67/85 (78%), Positives = 76/85 (89%)
Query: 6 EGEMSNLFEVYLKPYFLEAYRPVHKDDLFIVRGGMRAVEFKIVDTDPAPYCIVAADTVIH 65
EG NLFEVYLKPYFLEAYRP+ K D+F+VRGGMRAVEF +V+TDP+PYCIVA DTVIH
Sbjct: 127 EGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFXVVETDPSPYCIVAPDTVIH 186
Query: 66 CEGDPIKREEEEEASNAVGYDDIGG 90
CEG+PIKRE+EEE+ N VGYDDIGG
Sbjct: 187 CEGEPIKREDEEESLNEVGYDDIGG 211
>pdb|3H4M|A Chain A, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|B Chain B, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|C Chain C, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
Length = 285
Score = 141 bits (355), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 66/113 (58%), Positives = 88/113 (77%)
Query: 83 VGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 142
V Y+DIGG KQ+ +I+E+VELPL+HP LF+ +G++PP+GILLYGPPGTGKTL+A+AVA
Sbjct: 14 VRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVAT 73
Query: 143 ETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPSIIFIDELDAIAPKR 195
ET A F + G E++ K GE S ++ F+ A + +PSIIFIDE+DAIA KR
Sbjct: 74 ETNATFIRVVGSELVKKFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKR 126
>pdb|4B4T|I Chain I, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 135 bits (341), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 65/133 (48%), Positives = 91/133 (68%)
Query: 63 VIHCEGDPIKREEEEEASNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRG 122
V+ + DP+ + + S Y DIGG Q+ +IKE VELPL HP L++ +G+KPP+G
Sbjct: 159 VLQDDADPMVSVMKMDKSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKG 218
Query: 123 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPSI 182
++LYG PGTGKTL+A+AVAN+T A F I G E++ K G+ R+ F+ A +N+PSI
Sbjct: 219 VILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQKYLGDGPRLCRQIFKVAGENAPSI 278
Query: 183 IFIDELDAIAPKR 195
+FIDE+DAI KR
Sbjct: 279 VFIDEIDAIGTKR 291
>pdb|3QC8|A Chain A, Crystal Structure Of Faf1 Ubx Domain In Complex With
P97VCP N DOMAIN Reveals The Conserved Fcisp Touch-Turn
Motif Of Ubx Domain Suffering Conformational Change
Length = 178
Score = 130 bits (328), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 59/73 (80%), Positives = 67/73 (91%)
Query: 6 EGEMSNLFEVYLKPYFLEAYRPVHKDDLFIVRGGMRAVEFKIVDTDPAPYCIVAADTVIH 65
EG NLFEVYLKPYFLEAYRP+ K D+F+VRGGMRAVEFK+V+TDP+PYCIVA DTVIH
Sbjct: 106 EGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDTVIH 165
Query: 66 CEGDPIKREEEEE 78
CEG+PIKRE+EEE
Sbjct: 166 CEGEPIKREDEEE 178
>pdb|4B4T|K Chain K, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 428
Score = 128 bits (322), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 61/113 (53%), Positives = 78/113 (69%)
Query: 83 VGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 142
V Y D+GG Q +I+E VELPL L++ IG+ PPRG+LLYGPPGTGKT++ +AVAN
Sbjct: 169 VTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVAN 228
Query: 143 ETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPSIIFIDELDAIAPKR 195
T A F +NG E + K GE +R F A +N+PSIIFIDE+D+IA KR
Sbjct: 229 STKAAFIRVNGSEFVHKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKR 281
>pdb|4B4T|J Chain J, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 405
Score = 126 bits (316), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 55/111 (49%), Positives = 83/111 (74%)
Query: 85 YDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANET 144
YD +GG KQ+ +IKE++ELP++HP LF+++G+ P+G++LYGPPGTGKTL+ARAVA+ T
Sbjct: 147 YDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHT 206
Query: 145 GAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPSIIFIDELDAIAPKR 195
F ++G E++ K GE +R+ F A +++PSIIF+DE+D+I R
Sbjct: 207 DCKFIRVSGAELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTR 257
>pdb|4B4T|H Chain H, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 467
Score = 123 bits (308), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 58/113 (51%), Positives = 75/113 (66%)
Query: 83 VGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 142
V Y D+GGC+ Q+ +++E+VELPL P F +G+ PP+GILLYGPPGTGKTL ARAVAN
Sbjct: 206 VTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVAN 265
Query: 143 ETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPSIIFIDELDAIAPKR 195
T A F + G E++ K GE +R+ FE A IIF DE+DA+ R
Sbjct: 266 RTDATFIRVIGSELVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGAR 318
>pdb|4B4T|L Chain L, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 119 bits (297), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 57/129 (44%), Positives = 85/129 (65%)
Query: 67 EGDPIKREEEEEASNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLY 126
E DP+ + +D IGG +Q+ +++E++ELPL++P +F+ +G+KPP+G+LLY
Sbjct: 162 ETDPLVYNMTSFEQGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLY 221
Query: 127 GPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPSIIFID 186
GPPGTGKTL+A+AVA GA F I+ K GES +R+ F A ++ P IIF+D
Sbjct: 222 GPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARIIREMFAYAKEHEPCIIFMD 281
Query: 187 ELDAIAPKR 195
E+DAI +R
Sbjct: 282 EVDAIGGRR 290
>pdb|3CF0|A Chain A, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|B Chain B, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|C Chain C, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|D Chain D, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|E Chain E, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|F Chain F, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|G Chain G, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|H Chain H, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|I Chain I, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|J Chain J, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|K Chain K, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|L Chain L, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|M Chain M, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|N Chain N, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
Length = 301
Score = 118 bits (295), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 52/113 (46%), Positives = 79/113 (69%)
Query: 83 VGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 142
V ++DIGG +++E+V+ P+ HP F G+ P +G+L YGPPG GKTL+A+A+AN
Sbjct: 12 VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIAN 71
Query: 143 ETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPSIIFIDELDAIAPKR 195
E A F I GPE+++ GESE+N+R+ F++A + +P ++F DELD+IA R
Sbjct: 72 ECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKAR 124
>pdb|3TIW|A Chain A, Crystal Structure Of P97n In Complex With The C-Terminus
Of Gp78
pdb|3TIW|B Chain B, Crystal Structure Of P97n In Complex With The C-Terminus
Of Gp78
Length = 187
Score = 116 bits (290), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 51/64 (79%), Positives = 58/64 (90%)
Query: 6 EGEMSNLFEVYLKPYFLEAYRPVHKDDLFIVRGGMRAVEFKIVDTDPAPYCIVAADTVIH 65
EG NLFEVYLKPYFLEAYRP+ K D+F+VRGGMRAVEFK+V+TDP+PYCIVA DTVIH
Sbjct: 124 EGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDTVIH 183
Query: 66 CEGD 69
CEG+
Sbjct: 184 CEGE 187
>pdb|3QQ7|A Chain A, Crystal Structure Of The P97 N-Terminal Domain
pdb|3QQ8|A Chain A, Crystal Structure Of P97-N In Complex With Faf1-Ubx
Length = 186
Score = 116 bits (290), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 51/64 (79%), Positives = 58/64 (90%)
Query: 6 EGEMSNLFEVYLKPYFLEAYRPVHKDDLFIVRGGMRAVEFKIVDTDPAPYCIVAADTVIH 65
EG NLFEVYLKPYFLEAYRP+ K D+F+VRGGMRAVEFK+V+TDP+PYCIVA DTVIH
Sbjct: 123 EGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDTVIH 182
Query: 66 CEGD 69
CEG+
Sbjct: 183 CEGE 186
>pdb|4B4T|M Chain M, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 434
Score = 113 bits (282), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 52/111 (46%), Positives = 74/111 (66%)
Query: 85 YDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANET 144
Y D+GG KQ+ ++ E + LP++ FK +G++ P+G L+YGPPGTGKTL+ARA A +T
Sbjct: 180 YSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQT 239
Query: 145 GAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPSIIFIDELDAIAPKR 195
A F + P+++ GE +R AF A + +P+IIFIDELDAI KR
Sbjct: 240 NATFLKLAAPQLVQMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKR 290
>pdb|2X8A|A Chain A, Human Nuclear Valosin Containing Protein Like (Nvl), C-
Terminal Aaa-Atpase Domain
Length = 274
Score = 110 bits (275), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 50/113 (44%), Positives = 75/113 (66%)
Query: 83 VGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 142
V + DIG ++ + P+R+P FKA+G+ P G+LL GPPG GKTL+A+AVAN
Sbjct: 7 VTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVAN 66
Query: 143 ETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPSIIFIDELDAIAPKR 195
E+G F + GPE+++ GESE +R+ F+ A ++P +IF DE+DA+ P+R
Sbjct: 67 ESGLNFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRR 119
>pdb|2RKO|A Chain A, Crystal Structure Of The Vps4p-Dimer
Length = 331
Score = 105 bits (261), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 53/113 (46%), Positives = 74/113 (65%), Gaps = 1/113 (0%)
Query: 83 VGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 142
V ++D+ G +KE V LP++ P LFK KP GILLYGPPGTGK+ +A+AVA
Sbjct: 24 VKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVAT 82
Query: 143 ETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPSIIFIDELDAIAPKR 195
E + FF ++ +++SK GESE +++ F A +N PSIIFIDE+DA+ R
Sbjct: 83 EANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDEVDALTGTR 135
>pdb|3EIE|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The So4-Bound
State
Length = 322
Score = 103 bits (258), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 52/113 (46%), Positives = 74/113 (65%), Gaps = 1/113 (0%)
Query: 83 VGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 142
V ++D+ G +KE V LP++ P LFK KP GILLYGPPGTGK+ +A+AVA
Sbjct: 15 VKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVAT 73
Query: 143 ETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPSIIFIDELDAIAPKR 195
E + FF ++ +++SK GESE +++ F A +N PSIIFID++DA+ R
Sbjct: 74 EANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTR 126
>pdb|2QP9|X Chain X, Crystal Structure Of S.Cerevisiae Vps4
pdb|2QPA|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
Length = 355
Score = 103 bits (258), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 52/113 (46%), Positives = 74/113 (65%), Gaps = 1/113 (0%)
Query: 83 VGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 142
V ++D+ G +KE V LP++ P LFK KP GILLYGPPGTGK+ +A+AVA
Sbjct: 48 VKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVAT 106
Query: 143 ETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPSIIFIDELDAIAPKR 195
E + FF ++ +++SK GESE +++ F A +N PSIIFID++DA+ R
Sbjct: 107 EANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTR 159
>pdb|3EIH|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
Length = 340
Score = 103 bits (258), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 52/113 (46%), Positives = 74/113 (65%), Gaps = 1/113 (0%)
Query: 83 VGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 142
V ++D+ G +KE V LP++ P LFK KP GILLYGPPGTGK+ +A+AVA
Sbjct: 33 VKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVAT 91
Query: 143 ETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPSIIFIDELDAIAPKR 195
E + FF ++ +++SK GESE +++ F A +N PSIIFID++DA+ R
Sbjct: 92 EANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTR 144
>pdb|1LV7|A Chain A, Crystal Structure Of The Aaa Domain Of Ftsh
Length = 257
Score = 103 bits (257), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 50/111 (45%), Positives = 73/111 (65%), Gaps = 1/111 (0%)
Query: 85 YDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANET 144
+ D+ GC + ++ E+VE LR PS F+ +G K P+G+L+ GPPGTGKTL+A+A+A E
Sbjct: 11 FADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEA 69
Query: 145 GAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPSIIFIDELDAIAPKR 195
FF I+G + + G S +R FE+A K +P IIFIDE+DA+ +R
Sbjct: 70 KVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQR 120
>pdb|3D8B|A Chain A, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
pdb|3D8B|B Chain B, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
Length = 357
Score = 103 bits (257), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 66/187 (35%), Positives = 92/187 (49%), Gaps = 24/187 (12%)
Query: 20 YFLEAYRPVHKDDLFIVRGGMRAVEFKIVDTDPA-----------PYCIVAADTVIHCEG 68
YF P+ K D GGM+ + T+PA P I I G
Sbjct: 19 YFQSMVPPIPKQDGGEQNGGMQCKPYGAGPTEPAHPVDERLKNLEPKMIELIMNEIMDHG 78
Query: 69 DPIKREEEEEASNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGP 128
P V ++DI G A IKE+V P+ P +F + PP+GILL+GP
Sbjct: 79 PP------------VNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGL-RGPPKGILLFGP 125
Query: 129 PGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPSIIFIDEL 188
PGTGKTLI + +A+++GA FF I+ + SK GE E +R F A P++IFIDE+
Sbjct: 126 PGTGKTLIGKCIASQSGATFFSISASSLTSKWVGEGEKMVRALFAVARCQQPAVIFIDEI 185
Query: 189 DAIAPKR 195
D++ +R
Sbjct: 186 DSLLSQR 192
>pdb|2CE7|A Chain A, Edta Treated
pdb|2CE7|B Chain B, Edta Treated
pdb|2CE7|C Chain C, Edta Treated
pdb|2CE7|D Chain D, Edta Treated
pdb|2CE7|E Chain E, Edta Treated
pdb|2CE7|F Chain F, Edta Treated
pdb|2CEA|A Chain A, Cell Division Protein Ftsh
pdb|2CEA|B Chain B, Cell Division Protein Ftsh
pdb|2CEA|C Chain C, Cell Division Protein Ftsh
pdb|2CEA|D Chain D, Cell Division Protein Ftsh
pdb|2CEA|E Chain E, Cell Division Protein Ftsh
pdb|2CEA|F Chain F, Cell Division Protein Ftsh
Length = 476
Score = 103 bits (256), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 51/113 (45%), Positives = 73/113 (64%), Gaps = 1/113 (0%)
Query: 83 VGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 142
V + D+GG + + ++KE+VE L+ PS F IG + P+GILL GPPGTGKTL+ARAVA
Sbjct: 13 VTFKDVGGAEEAIEELKEVVEF-LKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAG 71
Query: 143 ETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPSIIFIDELDAIAPKR 195
E FF I+G + + G + +R F +A ++P I+FIDE+DA+ R
Sbjct: 72 EANVPFFHISGSDFVELFVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHR 124
>pdb|3KDS|E Chain E, Apo-ftsh Crystal Structure
pdb|3KDS|F Chain F, Apo-ftsh Crystal Structure
pdb|3KDS|G Chain G, Apo-ftsh Crystal Structure
Length = 465
Score = 100 bits (250), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 50/113 (44%), Positives = 72/113 (63%), Gaps = 1/113 (0%)
Query: 83 VGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 142
V + D+GG + + ++KE+VE L+ PS F IG + P+GILL GPPGTG TL+ARAVA
Sbjct: 13 VTFKDVGGAEEAIEELKEVVEF-LKDPSKFNRIGARMPKGILLVGPPGTGATLLARAVAG 71
Query: 143 ETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPSIIFIDELDAIAPKR 195
E FF I+G + + G + +R F +A ++P I+FIDE+DA+ R
Sbjct: 72 EANVPFFHISGSDFVELFVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHR 124
>pdb|2ZAM|A Chain A, Crystal Structure Of Mouse Skd1VPS4B APO-Form
pdb|2ZAN|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ATP-Form
pdb|2ZAO|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ADP-Form
Length = 444
Score = 96.7 bits (239), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 55/135 (40%), Positives = 80/135 (59%), Gaps = 9/135 (6%)
Query: 69 DPIKREEEEEASNA-------VGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPR 121
DP K++ + + A V + D+ G +KE V LP++ P LF P R
Sbjct: 110 DPEKKKLQNQLQGAIVIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRT-PWR 168
Query: 122 GILLYGPPGTGKTLIARAVANE-TGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSP 180
GILL+GPPGTGK+ +A+AVA E + FF I+ +++SK GESE ++ F+ A +N P
Sbjct: 169 GILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKP 228
Query: 181 SIIFIDELDAIAPKR 195
SIIFIDE+D++ R
Sbjct: 229 SIIFIDEIDSLCGSR 243
>pdb|1XWI|A Chain A, Crystal Structure Of Vps4b
Length = 322
Score = 95.9 bits (237), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 51/116 (43%), Positives = 73/116 (62%), Gaps = 2/116 (1%)
Query: 83 VGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 142
V + D+ G +KE V LP++ P LF P RGILL+GPPGTGK+ +A+AVA
Sbjct: 9 VKWSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVAT 67
Query: 143 E-TGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPSIIFIDELDAIAPKREK 197
E + FF I+ +++SK GESE ++ F+ A +N PSIIFIDE+D++ R +
Sbjct: 68 EANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSE 123
>pdb|2R62|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R62|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R65|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|C Chain C, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|D Chain D, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|E Chain E, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
Length = 268
Score = 94.7 bits (234), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 49/113 (43%), Positives = 69/113 (61%), Gaps = 1/113 (0%)
Query: 83 VGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 142
V + D+ G + ++ E+V+ L++P + +G K P+G+LL GPPGTGKTL+A+AVA
Sbjct: 8 VRFKDMAGNEEAKEEVVEIVDF-LKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAG 66
Query: 143 ETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPSIIFIDELDAIAPKR 195
E FF + G + G S +R FE A K +PSIIFIDE+DAI R
Sbjct: 67 EAHVPFFSMGGSSFIEMFVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSR 119
>pdb|3VFD|A Chain A, Human Spastin Aaa Domain
Length = 389
Score = 94.0 bits (232), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 51/115 (44%), Positives = 71/115 (61%), Gaps = 1/115 (0%)
Query: 81 NAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAV 140
AV +DDI G ++E+V LP P LF + P RG+LL+GPPG GKT++A+AV
Sbjct: 110 TAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRA-PARGLLLFGPPGNGKTMLAKAV 168
Query: 141 ANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPSIIFIDELDAIAPKR 195
A E+ A FF I+ + SK GE E +R F A + PSIIFID++D++ +R
Sbjct: 169 AAESNATFFNISAASLTSKYVGEGEKLVRALFAVARELQPSIIFIDQVDSLLCER 223
>pdb|3B9P|A Chain A, Spastin
Length = 297
Score = 89.7 bits (221), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 50/112 (44%), Positives = 63/112 (56%), Gaps = 1/112 (0%)
Query: 78 EASNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIA 137
E V + DI G ++EMV LP P LF + P +G+LL+GPPG GKTL+A
Sbjct: 13 EGGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRA-PAKGLLLFGPPGNGKTLLA 71
Query: 138 RAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPSIIFIDELD 189
RAVA E A F I+ + SK G+ E +R F A PSIIFIDE+D
Sbjct: 72 RAVATECSATFLNISAASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEVD 123
>pdb|2QZ4|A Chain A, Human Paraplegin, Aaa Domain In Complex With Adp
Length = 262
Score = 89.0 bits (219), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 44/113 (38%), Positives = 67/113 (59%), Gaps = 1/113 (0%)
Query: 83 VGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 142
V + D+ G + +++E V+ L+ P F +G K P+G LL GPPG GKTL+A+AVA
Sbjct: 3 VSFKDVAGMHEAKLEVREFVDY-LKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVAT 61
Query: 143 ETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPSIIFIDELDAIAPKR 195
E F + G E + + G + +R F+EA +P I++IDE+DA+ KR
Sbjct: 62 EAQVPFLAMAGAEFVEVIGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKR 114
>pdb|2DHR|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 499
Score = 87.4 bits (215), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 46/113 (40%), Positives = 70/113 (61%), Gaps = 1/113 (0%)
Query: 83 VGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 142
V + D+ G + ++KE+VE L++PS F +G + P+G+LL GPPG GKT +ARAVA
Sbjct: 28 VTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAG 86
Query: 143 ETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPSIIFIDELDAIAPKR 195
E F +G + + G + +R FE A +++P I+FIDE+DA+ KR
Sbjct: 87 EARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKR 139
>pdb|4EIW|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 508
Score = 87.4 bits (215), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 46/113 (40%), Positives = 70/113 (61%), Gaps = 1/113 (0%)
Query: 83 VGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 142
V + D+ G + ++KE+VE L++PS F +G + P+G+LL GPPG GKT +ARAVA
Sbjct: 37 VTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAG 95
Query: 143 ETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPSIIFIDELDAIAPKR 195
E F +G + + G + +R FE A +++P I+FIDE+DA+ KR
Sbjct: 96 EARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKR 148
>pdb|1IY2|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
Length = 278
Score = 86.3 bits (212), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 46/113 (40%), Positives = 70/113 (61%), Gaps = 1/113 (0%)
Query: 83 VGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 142
V + D+ G + ++KE+VE L++PS F +G + P+G+LL GPPG GKT +ARAVA
Sbjct: 37 VTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAG 95
Query: 143 ETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPSIIFIDELDAIAPKR 195
E F +G + + G + +R FE A +++P I+FIDE+DA+ KR
Sbjct: 96 EARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKR 148
>pdb|1IXZ|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
pdb|1IY0|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Amp-Pnp
From Thermus Thermophilus
pdb|1IY1|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Adp From
Thermus Thermophilus
Length = 254
Score = 86.3 bits (212), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 46/113 (40%), Positives = 70/113 (61%), Gaps = 1/113 (0%)
Query: 83 VGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 142
V + D+ G + ++KE+VE L++PS F +G + P+G+LL GPPG GKT +ARAVA
Sbjct: 13 VTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAG 71
Query: 143 ETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPSIIFIDELDAIAPKR 195
E F +G + + G + +R FE A +++P I+FIDE+DA+ KR
Sbjct: 72 EARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKR 124
>pdb|1IXR|C Chain C, Ruva-Ruvb Complex
Length = 312
Score = 47.0 bits (110), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 7/80 (8%)
Query: 118 KPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADK 177
+P +LL+GPPG GKT +A +A+E G + +GP I G+ + L + EE D
Sbjct: 36 EPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEK--PGDLAAILANSLEEGD- 92
Query: 178 NSPSIIFIDELDAIAPKREK 197
I+FIDE+ ++ + E+
Sbjct: 93 ----ILFIDEIHRLSRQAEE 108
>pdb|1IXS|B Chain B, Structure Of Ruvb Complexed With Ruva Domain Iii
Length = 318
Score = 47.0 bits (110), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 7/80 (8%)
Query: 118 KPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADK 177
+P +LL+GPPG GKT +A +A+E G + +GP I G+ + L + EE D
Sbjct: 36 EPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEK--PGDLAAILANSLEEGD- 92
Query: 178 NSPSIIFIDELDAIAPKREK 197
I+FIDE+ ++ + E+
Sbjct: 93 ----ILFIDEIHRLSRQAEE 108
>pdb|1HQC|A Chain A, Structure Of Ruvb From Thermus Thermophilus Hb8
pdb|1HQC|B Chain B, Structure Of Ruvb From Thermus Thermophilus Hb8
Length = 324
Score = 47.0 bits (110), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 7/80 (8%)
Query: 118 KPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADK 177
+P +LL+GPPG GKT +A +A+E G + +GP I G+ + L + EE D
Sbjct: 36 EPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEK--PGDLAAILANSLEEGD- 92
Query: 178 NSPSIIFIDELDAIAPKREK 197
I+FIDE+ ++ + E+
Sbjct: 93 ----ILFIDEIHRLSRQAEE 108
>pdb|1OFH|A Chain A, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFH|B Chain B, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFH|C Chain C, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFI|A Chain A, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
pdb|1OFI|B Chain B, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
pdb|1OFI|C Chain C, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
Length = 310
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 53/114 (46%), Gaps = 23/114 (20%)
Query: 92 RKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLI 151
R + Q++E PLRH P+ IL+ GP G GKT IAR +A A F +
Sbjct: 34 RWRRMQLQE----PLRHEV--------TPKNILMIGPTGVGKTEIARRLAKLANAPFIKV 81
Query: 152 NGPEI--MSKLAGESESNLRK-------AFEEADKNSPSIIFIDELDAIAPKRE 196
+ + + E +S +R A + ++N I+FIDE+D I K E
Sbjct: 82 EATKFTEVGYVGKEVDSIIRDLTDSAGGAIDAVEQN--GIVFIDEIDKICKKGE 133
>pdb|1D2N|A Chain A, D2 Domain Of N-Ethylmaleimide-Sensitive Fusion Protein
Length = 272
Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 44/77 (57%), Gaps = 7/77 (9%)
Query: 119 PPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESES----NLRKAFEE 174
P +LL GPP +GKT +A +A E+ F I P+ K+ G SE+ ++K F++
Sbjct: 63 PLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPD---KMIGFSETAKCQAMKKIFDD 119
Query: 175 ADKNSPSIIFIDELDAI 191
A K+ S + +D+++ +
Sbjct: 120 AYKSQLSCVVVDDIERL 136
>pdb|1NSF|A Chain A, D2 Hexamerization Domain Of N-Ethylmaleimide Sensitive
Factor (Nsf)
Length = 273
Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 44/77 (57%), Gaps = 7/77 (9%)
Query: 119 PPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESES----NLRKAFEE 174
P +LL GPP +GKT +A +A E+ F I P+ K+ G SE+ ++K F++
Sbjct: 62 PLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPD---KMIGFSETAKCQAMKKIFDD 118
Query: 175 ADKNSPSIIFIDELDAI 191
A K+ S + +D+++ +
Sbjct: 119 AYKSQLSCVVVDDIERL 135
>pdb|2C9O|A Chain A, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|B Chain B, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|C Chain C, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
Length = 456
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 33/57 (57%), Gaps = 5/57 (8%)
Query: 121 RGILLYGPPGTGKTLIARAVANETGAF--FFLINGPEIMSKLAGESE---SNLRKAF 172
R +LL GPPGTGKT +A A+A E G+ F + G E+ S ++E N R+A
Sbjct: 64 RAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYSTEIKKTEVLMENFRRAI 120
>pdb|1UM8|A Chain A, Crystal Structure Of Helicobacter Pylori Clpx
Length = 376
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 42/84 (50%), Gaps = 20/84 (23%)
Query: 122 GILLYGPPGTGKTLIARAVANE-------------TGAFFFLINGPEIMSKLAGESESNL 168
ILL GP G+GKTL+A+ +A T A + + I+++L S+ N+
Sbjct: 74 NILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASDWNV 133
Query: 169 RKAFEEADKNSPSIIFIDELDAIA 192
+KA I+FIDE+D I+
Sbjct: 134 QKA-------QKGIVFIDEIDKIS 150
>pdb|2XSZ|A Chain A, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|B Chain B, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|C Chain C, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
Length = 367
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 36/71 (50%), Gaps = 5/71 (7%)
Query: 121 RGILLYGPPGTGKTLIARAVANETGAF--FFLINGPEIMSKLAGESE---SNLRKAFEEA 175
R +LL GPPGTGKT +A A+A E G+ F G E+ S ++E N R+A
Sbjct: 78 RAVLLAGPPGTGKTALALAIAQELGSKVPFCPXVGSEVYSTEIKKTEVLXENFRRAIGLR 137
Query: 176 DKNSPSIIFID 186
K P I D
Sbjct: 138 IKEGPPGIIQD 148
>pdb|3HWS|A Chain A, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|B Chain B, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|C Chain C, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|D Chain D, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|E Chain E, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|F Chain F, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
Length = 363
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 6/80 (7%)
Query: 123 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEIM-SKLAGESESN-----LRKAFEEAD 176
ILL GP G+GKTL+A +A F + + + + GE N L+K +
Sbjct: 54 ILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQ 113
Query: 177 KNSPSIIFIDELDAIAPKRE 196
K I++ID++D I+ K +
Sbjct: 114 KAQRGIVYIDQIDKISRKSD 133
>pdb|3PVS|A Chain A, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|B Chain B, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|C Chain C, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|D Chain D, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
Length = 447
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 42/80 (52%), Gaps = 11/80 (13%)
Query: 113 KAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAF 172
+AI ++L+GPPGTGKT +A +A A + I + +G E +R+A
Sbjct: 43 RAIEAGHLHSMILWGPPGTGKTTLAEVIARYANA-----DVERISAVTSGVKE--IREAI 95
Query: 173 EEADKNSP----SIIFIDEL 188
E A +N +I+F+DE+
Sbjct: 96 ERARQNRNAGRRTILFVDEV 115
>pdb|3HTE|A Chain A, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|B Chain B, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|C Chain C, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|D Chain D, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|E Chain E, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|F Chain F, Crystal Structure Of Nucleotide-Free Hexameric Clpx
Length = 363
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 6/80 (7%)
Query: 123 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEIM-SKLAGESESN-----LRKAFEEAD 176
ILL GP G+GKTL+A +A F + + + + GE N L+K +
Sbjct: 54 ILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQ 113
Query: 177 KNSPSIIFIDELDAIAPKRE 196
K I++ID++D I+ K +
Sbjct: 114 KAQRGIVYIDQIDKISRKSD 133
>pdb|1SXJ|A Chain A, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 516
Score = 36.6 bits (83), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 21/39 (53%)
Query: 121 RGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSK 159
R +LYGPPG GKT A VA E G N ++ SK
Sbjct: 78 RAAMLYGPPGIGKTTAAHLVAQELGYDILEQNASDVRSK 116
>pdb|1KSF|X Chain X, Crystal Structure Of Clpa, An Hsp100 Chaperone And
Regulator Of Clpap Protease: Structural Basis Of
Differences In Function Of The Two Aaa+ Atpase Domains
pdb|1R6B|X Chain X, High Resolution Crystal Structure Of Clpa
Length = 758
Score = 36.6 bits (83), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 60/137 (43%), Gaps = 27/137 (19%)
Query: 76 EEEASNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGV---KPPRGILLYGPPGTG 132
EE+A ++ QLA++ + L R L +AI V + LL G G G
Sbjct: 160 EEQAGGEERLENFTTNLNQLARVGGIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVG 219
Query: 133 KTLIARAVANETGAFFFLING--PEIM----------------SKLAGESESNLRKAFEE 174
KT IA +A + ++ G PE+M +K G+ E + ++
Sbjct: 220 KTAIAEGLA------WRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQ 273
Query: 175 ADKNSPSIIFIDELDAI 191
++++ SI+FIDE+ I
Sbjct: 274 LEQDTNSILFIDEIHTI 290
>pdb|3U5Z|B Chain B, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|C Chain C, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|D Chain D, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|E Chain E, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|L Chain L, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|M Chain M, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|N Chain N, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|O Chain O, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U60|B Chain B, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U60|C Chain C, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U60|D Chain D, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U60|E Chain E, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U61|B Chain B, Structure Of T4 Bacteriophage Clamp Loader Bound To Closed
Clamp, Dna And Atp Analog And Adp
pdb|3U61|C Chain C, Structure Of T4 Bacteriophage Clamp Loader Bound To Closed
Clamp, Dna And Atp Analog And Adp
pdb|3U61|D Chain D, Structure Of T4 Bacteriophage Clamp Loader Bound To Closed
Clamp, Dna And Atp Analog And Adp
pdb|3U61|E Chain E, Structure Of T4 Bacteriophage Clamp Loader Bound To Closed
Clamp, Dna And Atp Analog And Adp
Length = 324
Score = 36.6 bits (83), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 40/90 (44%), Gaps = 8/90 (8%)
Query: 104 LPLRHPSLFKAIGVKP--PRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLA 161
LP FK+I K P IL PGTGKT +A+A+ ++ A +NG +
Sbjct: 30 LPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVNGSDCKIDFV 89
Query: 162 GESESNLRKA--FEEADKNSPSIIFIDELD 189
+N A F+ K +I IDE D
Sbjct: 90 RGPLTNFASAASFDGRQK----VIVIDEFD 115
>pdb|1IN8|A Chain A, Thermotoga Maritima Ruvb T158v
Length = 334
Score = 35.8 bits (81), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 37/66 (56%), Gaps = 8/66 (12%)
Query: 123 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPSI 182
+LL GPPG GKT +A +A+E + +GP ++ + G+ + L + E D +
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQ--GDMAAIL-TSLERGD-----V 105
Query: 183 IFIDEL 188
+FIDE+
Sbjct: 106 LFIDEI 111
>pdb|1IN4|A Chain A, Thermotoga Maritima Ruvb Holliday Junction Branch
Migration Motor
Length = 334
Score = 35.8 bits (81), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 37/66 (56%), Gaps = 8/66 (12%)
Query: 123 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPSI 182
+LL GPPG GKT +A +A+E + +GP ++ + G+ + L + E D +
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQ--GDMAAIL-TSLERGD-----V 105
Query: 183 IFIDEL 188
+FIDE+
Sbjct: 106 LFIDEI 111
>pdb|1IN5|A Chain A, Thermogota Maritima Ruvb A156s Mutant
Length = 334
Score = 35.8 bits (81), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 37/66 (56%), Gaps = 8/66 (12%)
Query: 123 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPSI 182
+LL GPPG GKT +A +A+E + +GP ++ + G+ + L + E D +
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQ--GDMAAIL-TSLERGD-----V 105
Query: 183 IFIDEL 188
+FIDE+
Sbjct: 106 LFIDEI 111
>pdb|1IN7|A Chain A, Thermotoga Maritima Ruvb R170a
Length = 334
Score = 35.8 bits (81), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 37/66 (56%), Gaps = 8/66 (12%)
Query: 123 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPSI 182
+LL GPPG GKT +A +A+E + +GP ++ + G+ + L + E D +
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQ--GDMAAIL-TSLERGD-----V 105
Query: 183 IFIDEL 188
+FIDE+
Sbjct: 106 LFIDEI 111
>pdb|1J7K|A Chain A, Thermotoga Maritima Ruvb P216g Mutant
Length = 334
Score = 35.8 bits (81), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 37/66 (56%), Gaps = 8/66 (12%)
Query: 123 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPSI 182
+LL GPPG GKT +A +A+E + +GP ++ + G+ + L + E D +
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQ--GDMAAIL-TSLERGD-----V 105
Query: 183 IFIDEL 188
+FIDE+
Sbjct: 106 LFIDEI 111
>pdb|1UBC|A Chain A, Structure Of Reca Protein
pdb|1UBE|A Chain A, Msreca-Adp Complex
pdb|1UBF|A Chain A, Msreca-Atpgs Complex
pdb|1UBG|A Chain A, Msreca-Datp Complex
pdb|2G88|A Chain A, Msreca-datp Complex
pdb|2ODN|A Chain A, Msreca-Datp Complex
pdb|2ODW|A Chain A, Msreca-Atp-Gama-S Complex
pdb|2OE2|A Chain A, Msreca-Native-Low Humidity 95%
pdb|2OEP|A Chain A, Msreca-adp-complex
pdb|2OES|A Chain A, Msreca-Native-Ssb
pdb|2OFO|A Chain A, Msreca-native
pdb|2ZR7|A Chain A, Msreca Native Form Ii'
pdb|2ZRM|A Chain A, Msreca Datp Form Iv
pdb|2ZRN|A Chain A, Msreca Form Iv
pdb|2ZRO|A Chain A, Msreca Adp Form Iv
pdb|2ZRP|A Chain A, Msreca Datp Form Ii'
Length = 349
Score = 35.4 bits (80), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 54/115 (46%), Gaps = 22/115 (19%)
Query: 104 LPLRHPSLFKAIGVKP-PRG--ILLYGPPGTGKTLIA-RAVAN--ETGAFFFLING---- 153
+P SL A+G+ PRG I +YGP +GKT +A AVAN G I+
Sbjct: 42 IPTGSISLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHAL 101
Query: 154 -PEIMSKLAGESESNL-------RKAFEEAD----KNSPSIIFIDELDAIAPKRE 196
PE KL +++S L +A E AD + II ID + A+ P+ E
Sbjct: 102 DPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLVRSGALDIIVIDSVAALVPRAE 156
>pdb|2ZRH|A Chain A, Msreca Q196a Form Iv
pdb|2ZRI|A Chain A, Msreca Q196a Adp Form Iv
pdb|2ZRJ|A Chain A, Msreca Q196a Atpgs Form Iv
pdb|2ZRK|A Chain A, Msreca Q196a Datp Form Iv
pdb|2ZRL|A Chain A, Msreca Q196a Datp Form Ii'
Length = 349
Score = 35.4 bits (80), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 54/115 (46%), Gaps = 22/115 (19%)
Query: 104 LPLRHPSLFKAIGVKP-PRG--ILLYGPPGTGKTLIA-RAVAN--ETGAFFFLING---- 153
+P SL A+G+ PRG I +YGP +GKT +A AVAN G I+
Sbjct: 42 IPTGSISLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHAL 101
Query: 154 -PEIMSKLAGESESNL-------RKAFEEAD----KNSPSIIFIDELDAIAPKRE 196
PE KL +++S L +A E AD + II ID + A+ P+ E
Sbjct: 102 DPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLVRSGALDIIVIDSVAALVPRAE 156
>pdb|2ZRC|A Chain A, Msreca Q196n Form Iv
pdb|2ZRD|A Chain A, Msreca Q196n Adp Form Iv
pdb|2ZRE|A Chain A, Msreca Q196n Atpgs Form Iv
pdb|2ZRF|A Chain A, Msreca Q196n Datp Form Iv
pdb|2ZRG|A Chain A, Msreca Q196n Datp Form Ii'
Length = 349
Score = 35.4 bits (80), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 54/115 (46%), Gaps = 22/115 (19%)
Query: 104 LPLRHPSLFKAIGVKP-PRG--ILLYGPPGTGKTLIA-RAVAN--ETGAFFFLING---- 153
+P SL A+G+ PRG I +YGP +GKT +A AVAN G I+
Sbjct: 42 IPTGSISLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHAL 101
Query: 154 -PEIMSKLAGESESNL-------RKAFEEAD----KNSPSIIFIDELDAIAPKRE 196
PE KL +++S L +A E AD + II ID + A+ P+ E
Sbjct: 102 DPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLVRSGALDIIVIDSVAALVPRAE 156
>pdb|2ZR0|A Chain A, Msreca-Q196e Mutant
pdb|2ZR9|A Chain A, Msreca Q196e Datp Form Iv
pdb|2ZRA|A Chain A, Msreca Q196e Atpgs
pdb|2ZRB|A Chain A, Msreca Q196e Form Ii'
Length = 349
Score = 35.4 bits (80), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 54/115 (46%), Gaps = 22/115 (19%)
Query: 104 LPLRHPSLFKAIGVKP-PRG--ILLYGPPGTGKTLIA-RAVAN--ETGAFFFLING---- 153
+P SL A+G+ PRG I +YGP +GKT +A AVAN G I+
Sbjct: 42 IPTGSISLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHAL 101
Query: 154 -PEIMSKLAGESESNL-------RKAFEEAD----KNSPSIIFIDELDAIAPKRE 196
PE KL +++S L +A E AD + II ID + A+ P+ E
Sbjct: 102 DPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLVRSGALDIIVIDSVAALVPRAE 156
>pdb|1IN6|A Chain A, Thermotoga Maritima Ruvb K64r Mutant
Length = 334
Score = 35.0 bits (79), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 37/66 (56%), Gaps = 8/66 (12%)
Query: 123 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPSI 182
+LL GPPG G+T +A +A+E + +GP ++ + G+ + L + E D +
Sbjct: 54 VLLAGPPGLGRTTLAHIIASELQTNIHVTSGPVLVKQ--GDMAAIL-TSLERGD-----V 105
Query: 183 IFIDEL 188
+FIDE+
Sbjct: 106 LFIDEI 111
>pdb|3UK6|A Chain A, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|B Chain B, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|C Chain C, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|D Chain D, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|E Chain E, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|F Chain F, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|G Chain G, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|H Chain H, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|I Chain I, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|J Chain J, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|K Chain K, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|L Chain L, Crystal Structure Of The Tip48 (Tip49b) Hexamer
Length = 368
Score = 34.7 bits (78), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Query: 121 RGILLYGPPGTGKTLIARAVANETG--AFFFLINGPEIMSKLAGESESNLRKAFEEA 175
R +L+ G PGTGKT IA +A G F I G EI S ++E+ L +AF +
Sbjct: 71 RAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSLEMSKTEA-LTQAFRRS 126
>pdb|3PXI|A Chain A, Structure Of Meca108:clpc
pdb|3PXI|B Chain B, Structure Of Meca108:clpc
pdb|3PXI|C Chain C, Structure Of Meca108:clpc
Length = 758
Score = 34.3 bits (77), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 36/76 (47%), Gaps = 19/76 (25%)
Query: 124 LLYGPPGTGKTLIARAVANETGAFFFLING--PEIM-----------SKLAGESESNLRK 170
+L G PG GKT IA +A + +IN PEI+ +K GE E L+K
Sbjct: 205 VLIGEPGVGKTAIAEGLAQQ------IINNEVPEILRDKRVMTLDMGTKYRGEFEDRLKK 258
Query: 171 AFEEADKNSPSIIFID 186
+E + I+FID
Sbjct: 259 VMDEIRQAGNIILFID 274
Score = 27.3 bits (59), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 4/30 (13%)
Query: 116 GVKPPR----GILLYGPPGTGKTLIARAVA 141
G+K P+ + GP G GKT +ARA+A
Sbjct: 513 GLKDPKRPIGSFIFLGPTGVGKTELARALA 542
>pdb|3PXG|A Chain A, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|B Chain B, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|C Chain C, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|D Chain D, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|E Chain E, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|F Chain F, Structure Of Meca121 And Clpc1-485 Complex
Length = 468
Score = 34.3 bits (77), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 36/76 (47%), Gaps = 19/76 (25%)
Query: 124 LLYGPPGTGKTLIARAVANETGAFFFLING--PEIM-----------SKLAGESESNLRK 170
+L G PG GKT IA +A + +IN PEI+ +K GE E L+K
Sbjct: 205 VLIGEPGVGKTAIAEGLAQQ------IINNEVPEILRDKRVMTLDMGTKYRGEFEDRLKK 258
Query: 171 AFEEADKNSPSIIFID 186
+E + I+FID
Sbjct: 259 VMDEIRQAGNIILFID 274
>pdb|1G3I|A Chain A, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|B Chain B, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|C Chain C, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|D Chain D, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|E Chain E, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|F Chain F, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|S Chain S, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|T Chain T, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|U Chain U, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|V Chain V, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|W Chain W, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|X Chain X, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G41|A Chain A, Crystal Structure Of Hslu Haemophilus Influenzae
pdb|1KYI|A Chain A, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|B Chain B, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|C Chain C, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|D Chain D, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|E Chain E, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|F Chain F, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|S Chain S, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|T Chain T, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|U Chain U, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|V Chain V, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|W Chain W, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|X Chain X, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
Length = 444
Score = 34.3 bits (77), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 23/47 (48%), Gaps = 8/47 (17%)
Query: 105 PLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLI 151
PLRH P+ IL+ GP G GKT IAR +A A F +
Sbjct: 43 PLRHEV--------TPKNILMIGPTGVGKTEIARRLAKLANAPFIKV 81
>pdb|2XSZ|D Chain D, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|E Chain E, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|F Chain F, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
Length = 378
Score = 33.9 bits (76), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Query: 121 RGILLYGPPGTGKTLIARAVANETG--AFFFLINGPEIMSKLAGESESNLRKAFEEA 175
R +L+ G PGTGKT IA A G F I G EI S ++E+ L +AF +
Sbjct: 86 RAVLIAGQPGTGKTAIAXGXAQALGPDTPFTAIAGSEIFSLEXSKTEA-LTQAFRRS 141
>pdb|4AI6|A Chain A, Dynein Motor Domain - Adp Complex
pdb|4AI6|B Chain B, Dynein Motor Domain - Adp Complex
pdb|4AKG|A Chain A, Dynein Motor Domain - Atp Complex
pdb|4AKG|B Chain B, Dynein Motor Domain - Atp Complex
pdb|4AKH|A Chain A, Dynein Motor Domain - Amppnp Complex
pdb|4AKH|B Chain B, Dynein Motor Domain - Amppnp Complex
pdb|4AKI|A Chain A, Dynein Motor Domain - Luac Derivative
pdb|4AKI|B Chain B, Dynein Motor Domain - Luac Derivative
Length = 2695
Score = 33.5 bits (75), Expect = 0.072, Method: Composition-based stats.
Identities = 14/31 (45%), Positives = 22/31 (70%), Gaps = 1/31 (3%)
Query: 106 LRHPSLFKAIGVKPPRGILLYGPPGTGKTLI 136
++H +F + + RGI+L GPPG+GKT+I
Sbjct: 1254 IKHEKIFYDL-LNSKRGIILCGPPGSGKTMI 1283
>pdb|3QMZ|A Chain A, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain
Motor Domain
pdb|3QMZ|B Chain B, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain
Motor Domain
Length = 2486
Score = 33.5 bits (75), Expect = 0.072, Method: Composition-based stats.
Identities = 14/31 (45%), Positives = 22/31 (70%), Gaps = 1/31 (3%)
Query: 106 LRHPSLFKAIGVKPPRGILLYGPPGTGKTLI 136
++H +F + + RGI+L GPPG+GKT+I
Sbjct: 1035 IKHEKIFYDL-LNSKRGIILCGPPGSGKTMI 1064
>pdb|4EUN|A Chain A, Crystal Structure Of A Sugar Kinase (Target Efi-502144
From Janibacter Sp. Htcc2649), Unliganded Structure
Length = 200
Score = 33.5 bits (75), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 118 KPPRGILLYGPPGTGKTLIARAVANETGAFF 148
+P R +++ G G+GKT IA VA+ETG F
Sbjct: 27 EPTRHVVVMGVSGSGKTTIAHGVADETGLEF 57
>pdb|1IM2|A Chain A, Hslu, Haemophilus Influenzae, Selenomethionine Variant
Length = 444
Score = 32.7 bits (73), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 8/53 (15%)
Query: 99 KEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLI 151
+ ++ PLRH P+ IL GP G GKT IAR +A A F +
Sbjct: 37 RXQLQEPLRHEV--------TPKNILXIGPTGVGKTEIARRLAKLANAPFIKV 81
>pdb|3T15|A Chain A, Structure Of Green-Type Rubisco Activase From Tobacco
pdb|3ZW6|A Chain A, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco.
pdb|3ZW6|B Chain B, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco.
pdb|3ZW6|C Chain C, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco.
pdb|3ZW6|D Chain D, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco.
pdb|3ZW6|E Chain E, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco.
pdb|3ZW6|F Chain F, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco
Length = 293
Score = 32.7 bits (73), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 43/89 (48%), Gaps = 4/89 (4%)
Query: 110 SLFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLR 169
+ K +K P + ++G G GK+ V + G +++ E+ S AGE +R
Sbjct: 26 NFLKLPNIKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIR 85
Query: 170 KAFEEA----DKNSPSIIFIDELDAIAPK 194
+ + EA K + +FI++LDA A +
Sbjct: 86 QRYREAAEIIRKGNMCCLFINDLDAGAGR 114
>pdb|1G4A|E Chain E, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4A|F Chain F, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|E Chain E, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|F Chain F, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|K Chain K, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|L Chain L, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1YYF|A Chain A, Correction Of X-Ray Intensities From An Hslv-Hslu Co-
Crystal Containing Lattice Translocation Defects
pdb|1YYF|B Chain B, Correction Of X-Ray Intensities From An Hslv-Hslu Co-
Crystal Containing Lattice Translocation Defects
Length = 443
Score = 32.7 bits (73), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 19/32 (59%)
Query: 120 PRGILLYGPPGTGKTLIARAVANETGAFFFLI 151
P+ IL+ GP G GKT IAR +A A F +
Sbjct: 50 PKNILMIGPTGVGKTEIARRLAKLANAPFIKV 81
>pdb|1DO2|A Chain A, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|B Chain B, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|C Chain C, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|D Chain D, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO0|A Chain A, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|B Chain B, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|C Chain C, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|D Chain D, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|E Chain E, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|F Chain F, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
Length = 442
Score = 32.7 bits (73), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 19/32 (59%)
Query: 120 PRGILLYGPPGTGKTLIARAVANETGAFFFLI 151
P+ IL+ GP G GKT IAR +A A F +
Sbjct: 49 PKNILMIGPTGVGKTEIARRLAKLANAPFIKV 80
>pdb|1E94|E Chain E, Hslv-Hslu From E.Coli
pdb|1E94|F Chain F, Hslv-Hslu From E.Coli
pdb|1HT2|E Chain E, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|F Chain F, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|G Chain G, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|H Chain H, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT1|E Chain E, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|F Chain F, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|G Chain G, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|I Chain I, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HQY|E Chain E, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HQY|F Chain F, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
Length = 449
Score = 32.7 bits (73), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 19/32 (59%)
Query: 120 PRGILLYGPPGTGKTLIARAVANETGAFFFLI 151
P+ IL+ GP G GKT IAR +A A F +
Sbjct: 56 PKNILMIGPTGVGKTEIARRLAKLANAPFIKV 87
>pdb|2CHG|A Chain A, Replication Factor C Domains 1 And 2
pdb|2CHG|B Chain B, Replication Factor C Domains 1 And 2
pdb|2CHG|C Chain C, Replication Factor C Domains 1 And 2
pdb|2CHG|D Chain D, Replication Factor C Domains 1 And 2
Length = 226
Score = 32.7 bits (73), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 13/79 (16%)
Query: 123 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNL---RKAFEEADKNS 179
+L GPPGTGKT A A+A + F N + ++ E + R +E + +
Sbjct: 41 LLFSGPPGTGKTATAIALARD----LFGENWRDNFIEMNASDERGIDVVRHKIKEFARTA 96
Query: 180 P------SIIFIDELDAIA 192
P IIF+DE DA+
Sbjct: 97 PIGGAPFKIIFLDEADALT 115
>pdb|1G18|A Chain A, Reca-Adp-Alf4 Complex
pdb|1G19|A Chain A, Structure Of Reca Protein
pdb|1MO3|A Chain A, Reca-Adp Complex
pdb|1MO4|A Chain A, Reca-Atp-Gamma-S Complex
pdb|1MO5|A Chain A, Reca-Atp-Gamma-S-Mg Complex
pdb|1MO6|A Chain A, Reca-datp-mg Complex
Length = 350
Score = 32.3 bits (72), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 54/115 (46%), Gaps = 22/115 (19%)
Query: 104 LPLRHPSLFKAIGVKP-PRG--ILLYGPPGTGKTLIA-RAVAN--ETGAFFFLING---- 153
+P +L A+G+ PRG I +YGP +GKT +A AVAN G I+
Sbjct: 41 IPTGSIALDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHAL 100
Query: 154 -PEIMSKLAGESESNL-------RKAFEEAD----KNSPSIIFIDELDAIAPKRE 196
P+ KL +++S L +A E AD + I+ ID + A+ P+ E
Sbjct: 101 DPDYAKKLGVDTDSLLVSQPDTGEQALEIADMLIRSGALDIVVIDSVAALVPRAE 155
>pdb|2CHQ|A Chain A, Replication Factor C Adpnp Complex
pdb|2CHQ|B Chain B, Replication Factor C Adpnp Complex
pdb|2CHQ|C Chain C, Replication Factor C Adpnp Complex
pdb|2CHV|A Chain A, Replication Factor C Adpnp Complex
pdb|2CHV|B Chain B, Replication Factor C Adpnp Complex
pdb|2CHV|C Chain C, Replication Factor C Adpnp Complex
pdb|2CHV|D Chain D, Replication Factor C Adpnp Complex
pdb|2CHV|E Chain E, Replication Factor C Adpnp Complex
pdb|2CHV|F Chain F, Replication Factor C Adpnp Complex
Length = 319
Score = 32.3 bits (72), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 13/79 (16%)
Query: 123 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNL---RKAFEEADKNS 179
+L GPPGTGKT A A+A + F N + ++ E + R +E + +
Sbjct: 41 LLFSGPPGTGKTATAIALARD----LFGENWRDNFIEMNASDERGIDVVRHKIKEFARTA 96
Query: 180 P------SIIFIDELDAIA 192
P IIF+DE DA+
Sbjct: 97 PIGGAPFKIIFLDEADALT 115
>pdb|1Y63|A Chain A, Initial Crystal Structural Analysis Of A Probable Kinase
From Leishmania Major Friedlin
Length = 184
Score = 32.3 bits (72), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Query: 116 GVKPPRGI--LLYGPPGTGKTLIARAVANETGAFFFL 150
++ P+GI L+ G PGTGKT +A +A E F L
Sbjct: 4 SMEQPKGINILITGTPGTGKTSMAEMIAAELDGFQHL 40
>pdb|3M6A|A Chain A, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|B Chain B, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|C Chain C, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|D Chain D, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|E Chain E, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|F Chain F, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
Length = 543
Score = 32.3 bits (72), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 41/79 (51%), Gaps = 10/79 (12%)
Query: 123 ILLYGPPGTGKTLIARAVANETGAFFFLIN--GPEIMSKLAGESES-------NLRKAFE 173
+ L GPPG GKT +A+++A G F I+ G S++ G + + + +
Sbjct: 111 LCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIRGHRRTYVGAMPGRIIQGMK 170
Query: 174 EADKNSPSIIFIDELDAIA 192
+A K +P + +DE+D ++
Sbjct: 171 KAGKLNP-VFLLDEIDKMS 188
>pdb|1IQP|A Chain A, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|B Chain B, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|C Chain C, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|D Chain D, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|E Chain E, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|F Chain F, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
Length = 327
Score = 31.6 bits (70), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 35/79 (44%), Gaps = 13/79 (16%)
Query: 123 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESN---LRKAFEEADKNS 179
+L GPPG GKT A A+A E F N +L E +R+ +E +
Sbjct: 49 LLFAGPPGVGKTTAALALARE----LFGENWRHNFLELNASDERGINVIREKVKEFARTK 104
Query: 180 P------SIIFIDELDAIA 192
P IIF+DE DA+
Sbjct: 105 PIGGASFKIIFLDEADALT 123
>pdb|2PL5|A Chain A, Crystal Structure Of Homoserine O-acetyltransferase From
Leptospira Interrogans
Length = 366
Score = 31.2 bits (69), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 43/108 (39%), Gaps = 6/108 (5%)
Query: 38 GGMRAVEFKIVDTDPAPYCIVAADTVIHCEGDPIKREEEEEA-----SNAVGYDDIGGCR 92
GGM+A+E+ I + CIV A T H E +A + G D R
Sbjct: 155 GGMQALEWSIAYPNSLSNCIVMASTAEHSAMQIAFNEVGRQAILSDPNWKNGLYDENSPR 214
Query: 93 KQLAQIKEMVELP-LRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARA 139
K LA + + + L + + G PPRG +L G LI +
Sbjct: 215 KGLALARMVGHITYLSDDKMREKFGRNPPRGNILSTDFAVGSYLIYQG 262
>pdb|1SXJ|D Chain D, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 353
Score = 30.8 bits (68), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 7/35 (20%)
Query: 123 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEIM 157
+L YGPPGTGKT A+ E + GP++M
Sbjct: 61 MLFYGPPGTGKTSTILALTKE-------LYGPDLM 88
>pdb|1SXJ|C Chain C, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 340
Score = 30.4 bits (67), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 13/21 (61%), Positives = 15/21 (71%)
Query: 123 ILLYGPPGTGKTLIARAVANE 143
+L YGPPGTGKT A+A E
Sbjct: 49 LLFYGPPGTGKTSTIVALARE 69
>pdb|2QBY|A Chain A, Crystal Structure Of A Heterodimer Of Cdc6ORC1 INITIATORS
Bound To Origin Dna (From S. Solfataricus)
Length = 386
Score = 30.0 bits (66), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 29/123 (23%), Positives = 46/123 (37%), Gaps = 31/123 (25%)
Query: 103 ELPLRHPSLFKAIGV-------KPPRGILLYGPPGTGKTLIARAVANETGAFFF------ 149
ELP R + K + + P I +YG GTGKT + + V ++ F
Sbjct: 21 ELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHV 80
Query: 150 ----------------LINGPEIMSKLAGESESNLRKAFEEA--DKNSPSIIFIDELDAI 191
L+ ++ G S + L + +A D S +I +DE+DA
Sbjct: 81 YINTRQIDTPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAF 140
Query: 192 APK 194
K
Sbjct: 141 VKK 143
>pdb|3VTF|A Chain A, Structure Of A Udp-Glucose Dehydrogenase From The
Hyperthermophilic Archaeon Pyrobaculum Islandicum
Length = 444
Score = 30.0 bits (66), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 128 PPGTGKTLIARAVANETGAF-FFLINGPEIM 157
PPGT + L+ARAVA E G F + + PE +
Sbjct: 147 PPGTTEGLVARAVAEEAGGVKFSVASNPEFL 177
>pdb|1FNN|A Chain A, Crystal Structure Of Cdc6p From Pyrobaculum Aerophilum
pdb|1FNN|B Chain B, Crystal Structure Of Cdc6p From Pyrobaculum Aerophilum
Length = 389
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 27/52 (51%), Gaps = 11/52 (21%)
Query: 106 LRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVA----NETGAFFFLING 153
LR+P G PR LL G PGTGKT+ R + ++T A F ING
Sbjct: 37 LRNP------GHHYPRATLL-GRPGTGKTVTLRKLWELYKDKTTARFVYING 81
>pdb|4HSE|A Chain A, Crystal Structure Of Clpb Nbd1 In Complex With Guanidinium
Chloride And Adp
Length = 397
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 35/81 (43%), Gaps = 13/81 (16%)
Query: 124 LLYGPPGTGKTLIARAVANE--TGAFFFLINGPEIMS----------KLAGESESNLRKA 171
+L G PG GKT I +A G + G I+S K GE E L+
Sbjct: 58 VLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAKYRGEFEERLKAV 117
Query: 172 FEEADKNSPSII-FIDELDAI 191
+E ++ +I FIDEL +
Sbjct: 118 IQEVVQSQGEVILFIDELHTV 138
>pdb|1GVN|B Chain B, Crystal Structure Of The Plasmid Maintenance System
EpsilonZETA: MEACHNISM OF TOXIN INACTIVATION AND TOXIN
Function
pdb|1GVN|D Chain D, Crystal Structure Of The Plasmid Maintenance System
EpsilonZETA: MEACHNISM OF TOXIN INACTIVATION AND TOXIN
Function
pdb|3Q8X|B Chain B, Structure Of A Toxin-Antitoxin System Bound To Its
Substrate
pdb|3Q8X|D Chain D, Structure Of A Toxin-Antitoxin System Bound To Its
Substrate
Length = 287
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 20/38 (52%)
Query: 116 GVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLING 153
V+ P LL G PG+GKT + A+ ET +I+
Sbjct: 29 AVESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDN 66
>pdb|1KAG|A Chain A, Crystal Structure Of The Escherichia Coli Shikimate Kinase
I (Arok)
pdb|1KAG|B Chain B, Crystal Structure Of The Escherichia Coli Shikimate Kinase
I (Arok)
Length = 173
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 121 RGILLYGPPGTGKTLIARAVANETGAFFF 149
R I L GP G GK+ I R +A + F+
Sbjct: 5 RNIFLVGPMGAGKSTIGRQLAQQLNMEFY 33
>pdb|1U0J|A Chain A, Crystal Structure Of Aav2 Rep40-adp Complex
Length = 267
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Query: 123 ILLYGPPGTGKTLIARAVANETGAFFFLIN 152
I L+GP TGKT IA A+A+ T F+ +N
Sbjct: 107 IWLFGPATTGKTNIAEAIAH-TVPFYGCVN 135
>pdb|1QVR|A Chain A, Crystal Structure Analysis Of Clpb
pdb|1QVR|B Chain B, Crystal Structure Analysis Of Clpb
pdb|1QVR|C Chain C, Crystal Structure Analysis Of Clpb
Length = 854
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 35/81 (43%), Gaps = 13/81 (16%)
Query: 124 LLYGPPGTGKTLIARAVANE--TGAFFFLINGPEIMS----------KLAGESESNLRKA 171
+L G PG GKT I +A G + G I+S K GE E L+
Sbjct: 195 VLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAKYRGEFEERLKAV 254
Query: 172 FEEADKNSPSII-FIDELDAI 191
+E ++ +I FIDEL +
Sbjct: 255 IQEVVQSQGEVILFIDELHTV 275
>pdb|1S9H|A Chain A, Crystal Structure Of Adeno-Associated Virus Type 2 Rep40
pdb|1S9H|B Chain B, Crystal Structure Of Adeno-Associated Virus Type 2 Rep40
pdb|1S9H|C Chain C, Crystal Structure Of Adeno-Associated Virus Type 2 Rep40
Length = 268
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Query: 123 ILLYGPPGTGKTLIARAVANETGAFFFLIN 152
I L+GP TGKT IA A+A+ T F+ +N
Sbjct: 108 IWLFGPATTGKTNIAEAIAH-TVPFYGCVN 136
>pdb|3K1J|A Chain A, Crystal Structure Of Lon Protease From Thermococcus
Onnurineus Na1
pdb|3K1J|B Chain B, Crystal Structure Of Lon Protease From Thermococcus
Onnurineus Na1
Length = 604
Score = 29.3 bits (64), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 17/21 (80%)
Query: 121 RGILLYGPPGTGKTLIARAVA 141
R +LL G PGTGK+++ +A+A
Sbjct: 61 RHVLLIGEPGTGKSMLGQAMA 81
>pdb|3PFI|A Chain A, 2.7 Angstrom Resolution Crystal Structure Of A Probable
Holliday Junction Dna Helicase (Ruvb) From Campylobacter
Jejuni Subsp. Jejuni Nctc 11168 In Complex With
Adenosine-5'-Diphosphate
pdb|3PFI|B Chain B, 2.7 Angstrom Resolution Crystal Structure Of A Probable
Holliday Junction Dna Helicase (Ruvb) From Campylobacter
Jejuni Subsp. Jejuni Nctc 11168 In Complex With
Adenosine-5'-Diphosphate
Length = 338
Score = 28.9 bits (63), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 8/75 (10%)
Query: 123 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPSI 182
IL GP G GKT +A ++ E A P I + +G+ + L E D I
Sbjct: 58 ILFSGPAGLGKTTLANIISYEXSANIKTTAAPXI--EKSGDLAAILTN-LSEGD-----I 109
Query: 183 IFIDELDAIAPKREK 197
+FIDE+ ++P E+
Sbjct: 110 LFIDEIHRLSPAIEE 124
>pdb|2ZE5|A Chain A, Crystal Structure Of Adenosine
Phosphate-Isopentenyltransferase
pdb|2ZE6|A Chain A, Crystal Structure Of Adenosine
Phosphate-isopentenyltransferase Complexed With
Substrate Analog, Dmaspp
pdb|2ZE7|A Chain A, Crystal Structure Of Adenosine
Phosphate-Isopentenyltransferase Complexed With Zinc Ion
And Substrate Analog, Dmaspp
pdb|2ZE8|A Chain A, Crystal Structure Of Adenosine
Phosphate-Isopentenyltransferase Complexed With
Diphosphate
pdb|2ZE8|B Chain B, Crystal Structure Of Adenosine
Phosphate-Isopentenyltransferase Complexed With
Diphosphate
pdb|2ZE8|C Chain C, Crystal Structure Of Adenosine
Phosphate-Isopentenyltransferase Complexed With
Diphosphate
pdb|2ZE8|D Chain D, Crystal Structure Of Adenosine
Phosphate-Isopentenyltransferase Complexed With
Diphosphate
Length = 253
Score = 28.9 bits (63), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 5/63 (7%)
Query: 124 LLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPSII 183
L+YGP +GKT +A +A ETG ++ + ++A S L E++ S I
Sbjct: 5 LIYGPTCSGKTDMAIQIAQETGWPVVALDRVQCCPQIATGSGRPL-----ESELQSTRRI 59
Query: 184 FID 186
++D
Sbjct: 60 YLD 62
>pdb|3FAJ|A Chain A, Structure Of The Structural Protein P131 Of The Archaeal
Virus Acidianus Two-Tailed Virus (Atv)
Length = 151
Score = 28.9 bits (63), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 154 PEIMSKLAGESESNLRKAFEEADKNSPSIIFIDELDAIAPKREK 197
PE+ KLAGE E+N R+A +E K + I DA+ P R K
Sbjct: 50 PEVTLKLAGE-EANARRAGDERTKEAIHAIVKMISDAMKPYRNK 92
>pdb|2P5T|B Chain B, Molecular And Structural Characterization Of The Pezat
Chromosomal Toxin-Antitoxin System Of The Human Pathogen
Streptococcus Pneumoniae
pdb|2P5T|D Chain D, Molecular And Structural Characterization Of The Pezat
Chromosomal Toxin-Antitoxin System Of The Human Pathogen
Streptococcus Pneumoniae
pdb|2P5T|F Chain F, Molecular And Structural Characterization Of The Pezat
Chromosomal Toxin-Antitoxin System Of The Human Pathogen
Streptococcus Pneumoniae
pdb|2P5T|H Chain H, Molecular And Structural Characterization Of The Pezat
Chromosomal Toxin-Antitoxin System Of The Human Pathogen
Streptococcus Pneumoniae
Length = 253
Score = 28.9 bits (63), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 19/42 (45%)
Query: 118 KPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSK 159
K P ILL G G GKT I R E +I+G S+
Sbjct: 30 KQPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSFRSQ 71
>pdb|1ZP6|A Chain A, Crystal Structure Of Atu3015, A Putative Cytidylate Kinase
From Agrobacterium Tumefaciens, Northeast Structural
Genomics Target Atr62
Length = 191
Score = 28.9 bits (63), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 17/23 (73%)
Query: 123 ILLYGPPGTGKTLIARAVANETG 145
+LL G PG+GK+ IA A+AN G
Sbjct: 12 LLLSGHPGSGKSTIAEALANLPG 34
>pdb|1RKB|A Chain A, The Structure Of Adrenal Gland Protein Ad-004
Length = 173
Score = 28.9 bits (63), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 17/24 (70%)
Query: 122 GILLYGPPGTGKTLIARAVANETG 145
ILL G PG GKT + + +A+++G
Sbjct: 6 NILLTGTPGVGKTTLGKELASKSG 29
>pdb|2R7D|A Chain A, Crystal Structure Of Ribonuclease Ii Family Protein From
Deinococcus Radiodurans, Triclinic Crystal Form.
Northeast Structural Genomics Target Drr63
pdb|2R7D|B Chain B, Crystal Structure Of Ribonuclease Ii Family Protein From
Deinococcus Radiodurans, Triclinic Crystal Form.
Northeast Structural Genomics Target Drr63
pdb|2R7D|C Chain C, Crystal Structure Of Ribonuclease Ii Family Protein From
Deinococcus Radiodurans, Triclinic Crystal Form.
Northeast Structural Genomics Target Drr63
pdb|2R7F|A Chain A, Crystal Structure Of Ribonuclease Ii Family Protein From
Deinococcus Radiodurans, Hexagonal Crystal Form.
Northeast Structural Genomics Target Drr63
Length = 469
Score = 28.5 bits (62), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 4/60 (6%)
Query: 36 VRGGMRAVEFKIVDTDPAPYCIVAADTVIHCEGDPIKREEEEEASNAVGYDDIGGCRKQL 95
+R + AVE + D DPA + + H I E ++ +AVG +D+GG +L
Sbjct: 61 LRAALNAVELPVPDFDPAEERL----DLTHLPTFAIDDEGNQDPDDAVGVEDLGGGLTRL 116
>pdb|2W58|A Chain A, Crystal Structure Of The Dnai
pdb|2W58|B Chain B, Crystal Structure Of The Dnai
Length = 202
Score = 28.5 bits (62), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 118 KPPRGILLYGPPGTGKTLIARAVANE 143
K +G+ L+G G GKT + A+ANE
Sbjct: 52 KKMKGLYLHGSFGVGKTYLLAAIANE 77
>pdb|3IIJ|A Chain A, The Structure Of Hcinap-Adp Complex At 1.76 Angstroms
Resolution.
pdb|3IIK|A Chain A, The Structure Of Hcinap-So4 Complex At 1.95 Angstroms
Resolution
pdb|3IIL|A Chain A, The Structure Of Hcinap-Mgadp-Pi Complex At 2.0 Angstroms
Resolution
pdb|3IIM|A Chain A, The Structure Of Hcinap-Dadp Complex At 2.0 Angstroms
Resolution
Length = 180
Score = 28.5 bits (62), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 17/24 (70%)
Query: 122 GILLYGPPGTGKTLIARAVANETG 145
ILL G PG GKT + + +A+++G
Sbjct: 13 NILLTGTPGVGKTTLGKELASKSG 36
>pdb|1OJL|A Chain A, Crystal Structure Of A Sigma54-activator Suggests The
Mechanism For The Conformational Switch Necessary For
Sigma54 Binding
pdb|1OJL|B Chain B, Crystal Structure Of A Sigma54-activator Suggests The
Mechanism For The Conformational Switch Necessary For
Sigma54 Binding
pdb|1OJL|C Chain C, Crystal Structure Of A Sigma54-activator Suggests The
Mechanism For The Conformational Switch Necessary For
Sigma54 Binding
pdb|1OJL|D Chain D, Crystal Structure Of A Sigma54-activator Suggests The
Mechanism For The Conformational Switch Necessary For
Sigma54 Binding
pdb|1OJL|E Chain E, Crystal Structure Of A Sigma54-activator Suggests The
Mechanism For The Conformational Switch Necessary For
Sigma54 Binding
pdb|1OJL|F Chain F, Crystal Structure Of A Sigma54-activator Suggests The
Mechanism For The Conformational Switch Necessary For
Sigma54 Binding
Length = 304
Score = 28.5 bits (62), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 39/87 (44%), Gaps = 20/87 (22%)
Query: 123 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNL--------RKAFEE 174
+L++G GTGK L+ARA+ A + P + A +ES L + AF
Sbjct: 28 VLIHGDSGTGKELVARALH----ACSARSDRPLVTLNCAALNESLLESELFGHEKGAFTG 83
Query: 175 ADKNSP--------SIIFIDELDAIAP 193
ADK +F+DE+ I+P
Sbjct: 84 ADKRREGRFVEADGGTLFLDEIGDISP 110
>pdb|2V1U|A Chain A, Structure Of The Aeropyrum Pernix Orc1 Protein In Complex
With Dna
Length = 387
Score = 28.1 bits (61), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 13/21 (61%), Positives = 14/21 (66%)
Query: 120 PRGILLYGPPGTGKTLIARAV 140
P LLYG GTGKT +AR V
Sbjct: 44 PSNALLYGLTGTGKTAVARLV 64
>pdb|2HCB|A Chain A, Structure Of Amppcp-Bound Dnaa From Aquifex Aeolicus
pdb|2HCB|B Chain B, Structure Of Amppcp-Bound Dnaa From Aquifex Aeolicus
pdb|2HCB|C Chain C, Structure Of Amppcp-Bound Dnaa From Aquifex Aeolicus
pdb|2HCB|D Chain D, Structure Of Amppcp-Bound Dnaa From Aquifex Aeolicus
Length = 323
Score = 28.1 bits (61), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 123 ILLYGPPGTGKTLIARAVANE 143
I +YG GTGKT + +A NE
Sbjct: 39 IFIYGSVGTGKTHLLQAAGNE 59
>pdb|3R8F|A Chain A, Protein-Dna Complex
pdb|3R8F|B Chain B, Protein-Dna Complex
pdb|3R8F|C Chain C, Protein-Dna Complex
pdb|3R8F|D Chain D, Protein-Dna Complex
Length = 324
Score = 28.1 bits (61), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 123 ILLYGPPGTGKTLIARAVANE 143
I +YG GTGKT + +A NE
Sbjct: 40 IFIYGSVGTGKTHLLQAAGNE 60
>pdb|3R8C|A Chain A, Crystal Structure Of Cytidylate Kinase (Cmk) From
Mycobacterium Abscessus
pdb|3R8C|B Chain B, Crystal Structure Of Cytidylate Kinase (Cmk) From
Mycobacterium Abscessus
pdb|4DIE|A Chain A, Crystal Structure Of A Cytidylate Kinase Cmk From
Mycobacterium Abscessus Bound To
Cytidine-5'-Monophosphate
pdb|4DIE|B Chain B, Crystal Structure Of A Cytidylate Kinase Cmk From
Mycobacterium Abscessus Bound To
Cytidine-5'-Monophosphate
pdb|4DIE|C Chain C, Crystal Structure Of A Cytidylate Kinase Cmk From
Mycobacterium Abscessus Bound To
Cytidine-5'-Monophosphate
pdb|4DIE|D Chain D, Crystal Structure Of A Cytidylate Kinase Cmk From
Mycobacterium Abscessus Bound To
Cytidine-5'-Monophosphate
Length = 228
Score = 28.1 bits (61), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 18/27 (66%)
Query: 123 ILLYGPPGTGKTLIARAVANETGAFFF 149
+ + GP GTGK+ +A+ +A + GA +
Sbjct: 7 VAVDGPSGTGKSSVAKELARQLGASYL 33
>pdb|1L8Q|A Chain A, Crystal Structure Of Dna Replication Initiation Factor
Length = 324
Score = 28.1 bits (61), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 123 ILLYGPPGTGKTLIARAVANE 143
I +YG GTGKT + +A NE
Sbjct: 40 IFIYGSVGTGKTHLLQAAGNE 60
>pdb|3FDU|A Chain A, Crystal Structure Of A Putative Enoyl-Coa
HydrataseISOMERASE FROM Acinetobacter Baumannii
pdb|3FDU|B Chain B, Crystal Structure Of A Putative Enoyl-Coa
HydrataseISOMERASE FROM Acinetobacter Baumannii
pdb|3FDU|C Chain C, Crystal Structure Of A Putative Enoyl-Coa
HydrataseISOMERASE FROM Acinetobacter Baumannii
pdb|3FDU|D Chain D, Crystal Structure Of A Putative Enoyl-Coa
HydrataseISOMERASE FROM Acinetobacter Baumannii
pdb|3FDU|E Chain E, Crystal Structure Of A Putative Enoyl-Coa
HydrataseISOMERASE FROM Acinetobacter Baumannii
pdb|3FDU|F Chain F, Crystal Structure Of A Putative Enoyl-Coa
HydrataseISOMERASE FROM Acinetobacter Baumannii
Length = 266
Score = 27.7 bits (60), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 19/36 (52%)
Query: 143 ETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKN 178
E G IN PE + L GE + KA +EAD+N
Sbjct: 12 EGGVLTLAINRPEAKNALYGELYLWIAKALDEADQN 47
>pdb|2AR7|A Chain A, Crystal Structure Of Human Adenylate Kinase 4, Ak4
pdb|2AR7|B Chain B, Crystal Structure Of Human Adenylate Kinase 4, Ak4
pdb|2BBW|A Chain A, Crystal Structure Of Human Adenylate Kinase 4 (Ak4) In
Complex With Diguanosine Pentaphosphate
pdb|2BBW|B Chain B, Crystal Structure Of Human Adenylate Kinase 4 (Ak4) In
Complex With Diguanosine Pentaphosphate
Length = 246
Score = 27.7 bits (60), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 112 FKAIGVKPPRGILLYGPPGTGKTLIARAVANETG 145
F+++ K R ++L GPPG+GK + + +A G
Sbjct: 20 FQSMASKLLRAVIL-GPPGSGKGTVCQRIAQNFG 52
>pdb|3VKG|A Chain A, X-Ray Structure Of An Mtbd Truncation Mutant Of Dynein
Motor Domain
pdb|3VKG|B Chain B, X-Ray Structure Of An Mtbd Truncation Mutant Of Dynein
Motor Domain
Length = 3245
Score = 27.7 bits (60), Expect = 4.7, Method: Composition-based stats.
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 126 YGPPGTGKTLIARAVANETGAFFFL 150
+GP GTGKT +A+ ++ G F +
Sbjct: 610 FGPAGTGKTETVKALGSQLGRFVLV 634
>pdb|2A35|A Chain A, 1.5 A Crystal Structure Of A Protein Of Unknown Function
Pa4017 From Pseudomonas Aeruginosa Pao1, Possible
Epimerase
pdb|2A35|B Chain B, 1.5 A Crystal Structure Of A Protein Of Unknown Function
Pa4017 From Pseudomonas Aeruginosa Pao1, Possible
Epimerase
Length = 215
Score = 27.7 bits (60), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 25/57 (43%), Gaps = 6/57 (10%)
Query: 61 DTVIHCEGDPIKREEEEEASNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGV 117
DT C G IK EEA AV +D LA K +E+ RH + A+G
Sbjct: 67 DTAFCCLGTTIKEAGSEEAFRAVDFD------LPLAVGKRALEMGARHYLVVSALGA 117
>pdb|3NGM|A Chain A, Crystal Structure Of Lipase From Gibberella Zeae
pdb|3NGM|B Chain B, Crystal Structure Of Lipase From Gibberella Zeae
pdb|3NGM|C Chain C, Crystal Structure Of Lipase From Gibberella Zeae
pdb|3NGM|D Chain D, Crystal Structure Of Lipase From Gibberella Zeae
Length = 319
Score = 27.3 bits (59), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 21/41 (51%)
Query: 120 PRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKL 160
P I YG P G T +A V+N+ G F + N + + +L
Sbjct: 163 PLDIYTYGSPRVGNTQLAAFVSNQAGGEFRVTNAKDPVPRL 203
>pdb|3VKH|A Chain A, X-Ray Structure Of A Functional Full-Length Dynein Motor
Domain
pdb|3VKH|B Chain B, X-Ray Structure Of A Functional Full-Length Dynein Motor
Domain
Length = 3367
Score = 27.3 bits (59), Expect = 5.0, Method: Composition-based stats.
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 126 YGPPGTGKTLIARAVANETGAFFFL 150
+GP GTGKT +A+ ++ G F +
Sbjct: 610 FGPAGTGKTETVKALGSQLGRFVLV 634
>pdb|1JBK|A Chain A, Crystal Structure Of The First Nucelotide Binding Domain
Of Clpb
Length = 195
Score = 27.3 bits (59), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 36/87 (41%), Gaps = 25/87 (28%)
Query: 124 LLYGPPGTGKTLIARAVANETGAFFFLING--PEIM----------------SKLAGESE 165
+L G PG GKT I +A +ING PE + +K GE E
Sbjct: 47 VLIGEPGVGKTAIVEGLAQR------IINGEVPEGLKGRRVLALDMGALVAGAKYRGEFE 100
Query: 166 SNLRKAFEEADKNSPSII-FIDELDAI 191
L+ + K ++I FIDEL +
Sbjct: 101 ERLKGVLNDLAKQEGNVILFIDELHTM 127
>pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp-
Binding Protein (cbio-2), St1066
Length = 263
Score = 27.3 bits (59), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 5/37 (13%)
Query: 123 ILLYGPPGTGKTLIARAVAN---ETGAFFFLINGPEI 156
+++ GP G+GKT + RA++ +G F ING E+
Sbjct: 33 VIILGPNGSGKTTLLRAISGLLPYSGNIF--INGMEV 67
>pdb|2RGX|A Chain A, Crystal Structure Of Adenylate Kinase From Aquifex
Aeolicus In Complex With Ap5a
pdb|2RH5|A Chain A, Structure Of Apo Adenylate Kinase From Aquifex Aeolicus
pdb|2RH5|C Chain C, Structure Of Apo Adenylate Kinase From Aquifex Aeolicus
pdb|2RH5|B Chain B, Structure Of Apo Adenylate Kinase From Aquifex Aeolicus
pdb|3SR0|A Chain A, Crystal Structure Of The Phosphoryl Transfer Transition
State Mimic In The Adenylate Kinase: AdpALF4AMP IN THE
ACTIVE SITE
pdb|3SR0|B Chain B, Crystal Structure Of The Phosphoryl Transfer Transition
State Mimic In The Adenylate Kinase: AdpALF4AMP IN THE
ACTIVE SITE
Length = 206
Score = 26.9 bits (58), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 36/74 (48%), Gaps = 4/74 (5%)
Query: 123 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNS--P 180
++ GPPG GK A+ +A E G F I+ +I+ + + +KA E ++ P
Sbjct: 3 LVFLGPPGAGKGTQAKRLAKEKG--FVHISTGDILREAVQKGTPLGKKAKEYMERGELVP 60
Query: 181 SIIFIDELDAIAPK 194
+ I ++ + PK
Sbjct: 61 DDLIIALIEEVFPK 74
>pdb|1BI9|A Chain A, Retinal Dehydrogenase Type Two With Nad Bound
pdb|1BI9|B Chain B, Retinal Dehydrogenase Type Two With Nad Bound
pdb|1BI9|C Chain C, Retinal Dehydrogenase Type Two With Nad Bound
pdb|1BI9|D Chain D, Retinal Dehydrogenase Type Two With Nad Bound
Length = 499
Score = 26.9 bits (58), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Query: 129 PGTGKTLIARAVANETGAFFFLINGPEIMSKLAGES--ESNLRKAFEEADKNSPSIIFID 186
PG G T A A+A+ G G + KL E+ SNL++ E SP+IIF D
Sbjct: 221 PGYGPTAGA-AIASHIGIDKIAFTGSTEVGKLIQEAAGRSNLKRVTLELGGKSPNIIFAD 279
>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|B Chain B, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|C Chain C, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|D Chain D, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|E Chain E, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|F Chain F, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|G Chain G, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|H Chain H, Crystal Structure Of Eschericia Coli Msba
Length = 582
Score = 26.9 bits (58), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 5/70 (7%)
Query: 122 GILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPS 181
G+LL G + IARA+ ++ E S L ESE ++ A +E KN S
Sbjct: 478 GVLLSGGQ-RQRIAIARALLRDSPILIL----DEATSALDTESERAIQAALDELQKNRTS 532
Query: 182 IIFIDELDAI 191
++ L I
Sbjct: 533 LVIAHRLSTI 542
>pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Z|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B60|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
Length = 582
Score = 26.6 bits (57), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 5/70 (7%)
Query: 122 GILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPS 181
G+LL G + IARA+ ++ E S L ESE ++ A +E KN S
Sbjct: 478 GVLLSGGQ-RQRIAIARALLRDSPILIL----DEATSALDTESERAIQAALDELQKNRTS 532
Query: 182 IIFIDELDAI 191
++ L I
Sbjct: 533 LVIAHRLSTI 542
>pdb|2EWV|A Chain A, Crystal Structure Of The Pilus Retraction Motor Pilt And
Bound Adp
Length = 372
Score = 26.6 bits (57), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 36/80 (45%), Gaps = 14/80 (17%)
Query: 123 ILLYGPPGTGK-TLIARAV--ANETGAFFFL-INGPE----------IMSKLAGESESNL 168
IL+ GP G+GK T IA + N+T ++ + I P + + GE +
Sbjct: 139 ILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSF 198
Query: 169 RKAFEEADKNSPSIIFIDEL 188
A A + P +IF+ E+
Sbjct: 199 ADALRAALREDPDVIFVGEM 218
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.140 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,144,775
Number of Sequences: 62578
Number of extensions: 254361
Number of successful extensions: 1206
Number of sequences better than 100.0: 131
Number of HSP's better than 100.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 32
Number of HSP's that attempted gapping in prelim test: 1071
Number of HSP's gapped (non-prelim): 148
length of query: 197
length of database: 14,973,337
effective HSP length: 94
effective length of query: 103
effective length of database: 9,091,005
effective search space: 936373515
effective search space used: 936373515
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)