Query psy6208
Match_columns 197
No_of_seqs 356 out of 2360
Neff 9.1
Searched_HMMs 46136
Date Fri Aug 16 20:29:59 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6208.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6208hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1222 RPT1 ATP-dependent 26S 100.0 5.8E-31 1.3E-35 211.3 15.3 124 73-196 138-261 (406)
2 KOG0733|consensus 100.0 2.8E-29 6.1E-34 212.6 11.3 119 79-197 504-622 (802)
3 COG1223 Predicted ATPase (AAA+ 100.0 1.1E-27 2.3E-32 185.6 14.7 178 10-196 50-227 (368)
4 KOG0730|consensus 100.0 2.3E-28 4.9E-33 208.8 10.2 117 80-196 428-544 (693)
5 KOG0736|consensus 99.9 6.2E-28 1.3E-32 208.7 11.0 119 77-196 663-781 (953)
6 KOG0733|consensus 99.9 1.1E-26 2.3E-31 197.1 11.3 114 82-196 186-299 (802)
7 KOG0727|consensus 99.9 3.3E-25 7.2E-30 171.4 11.9 120 76-195 145-264 (408)
8 KOG0739|consensus 99.9 1.2E-25 2.6E-30 177.2 9.4 116 80-196 127-242 (439)
9 KOG0738|consensus 99.9 1.9E-25 4.1E-30 181.1 9.3 117 79-196 205-321 (491)
10 KOG0652|consensus 99.9 2E-24 4.4E-29 167.8 12.8 166 30-195 103-280 (424)
11 KOG0728|consensus 99.9 1.7E-24 3.8E-29 167.3 10.6 120 77-196 138-257 (404)
12 KOG0726|consensus 99.9 7.1E-25 1.5E-29 172.4 8.5 127 69-195 168-294 (440)
13 TIGR01243 CDC48 AAA family ATP 99.9 1.9E-23 4.1E-28 187.9 18.5 182 12-196 107-288 (733)
14 KOG0729|consensus 99.9 2.2E-24 4.9E-29 168.0 10.0 119 77-195 168-286 (435)
15 KOG0735|consensus 99.9 3.7E-24 8E-29 184.2 11.7 115 82-196 663-777 (952)
16 KOG0734|consensus 99.9 6.6E-24 1.4E-28 178.0 10.9 120 76-196 294-413 (752)
17 PTZ00454 26S protease regulato 99.9 4.4E-23 9.6E-28 172.9 11.6 117 79-195 138-254 (398)
18 PRK03992 proteasome-activating 99.9 9.5E-23 2E-27 171.1 11.5 117 79-195 124-240 (389)
19 KOG0731|consensus 99.9 1.3E-22 2.7E-27 177.9 11.4 115 80-195 305-419 (774)
20 KOG0730|consensus 99.9 1E-22 2.3E-27 174.3 9.5 182 7-196 113-295 (693)
21 COG0464 SpoVK ATPases of the A 99.9 2.7E-22 5.9E-27 173.4 11.6 117 80-196 236-352 (494)
22 PTZ00361 26 proteosome regulat 99.9 2.7E-22 5.9E-27 169.4 9.4 118 78-195 175-292 (438)
23 TIGR01243 CDC48 AAA family ATP 99.9 7.1E-22 1.5E-26 177.8 12.1 117 80-196 447-563 (733)
24 KOG0737|consensus 99.9 2.6E-22 5.7E-27 162.2 6.7 116 80-195 86-202 (386)
25 KOG0651|consensus 99.9 2E-21 4.3E-26 153.9 8.9 117 79-195 125-241 (388)
26 TIGR03689 pup_AAA proteasome A 99.9 2.7E-21 5.8E-26 165.6 10.4 118 79-196 175-306 (512)
27 TIGR01242 26Sp45 26S proteasom 99.8 4.8E-21 1E-25 159.8 10.5 117 79-195 115-231 (364)
28 TIGR01241 FtsH_fam ATP-depende 99.8 5.7E-21 1.2E-25 165.1 10.7 116 80-196 49-164 (495)
29 CHL00195 ycf46 Ycf46; Provisio 99.8 4.5E-20 9.8E-25 158.0 11.4 112 81-195 223-334 (489)
30 COG0465 HflB ATP-dependent Zn 99.8 3.8E-20 8.3E-25 159.6 9.5 116 80-196 144-259 (596)
31 CHL00176 ftsH cell division pr 99.8 1E-19 2.2E-24 160.2 11.2 114 81-195 178-291 (638)
32 KOG0740|consensus 99.8 7.9E-20 1.7E-24 152.0 9.1 118 78-196 145-262 (428)
33 PLN00020 ribulose bisphosphate 99.8 1.4E-19 3E-24 147.8 9.9 113 82-196 111-229 (413)
34 KOG0732|consensus 99.8 9.7E-19 2.1E-23 157.5 9.2 116 80-195 259-379 (1080)
35 KOG0741|consensus 99.8 1.1E-17 2.4E-22 140.7 15.0 120 77-196 210-341 (744)
36 PF05496 RuvB_N: Holliday junc 99.7 1.3E-16 2.9E-21 122.6 8.2 102 78-195 16-117 (233)
37 PRK10733 hflB ATP-dependent me 99.7 3E-16 6.4E-21 139.3 10.7 114 82-196 148-261 (644)
38 PF00004 AAA: ATPase family as 99.7 2.5E-16 5.3E-21 112.5 8.3 73 123-195 1-74 (132)
39 TIGR02881 spore_V_K stage V sp 99.7 4.8E-16 1E-20 124.2 9.5 105 85-193 5-119 (261)
40 CHL00206 ycf2 Ycf2; Provisiona 99.6 5.7E-16 1.2E-20 145.7 9.5 87 109-195 1619-1748(2281)
41 TIGR02880 cbbX_cfxQ probable R 99.6 1.5E-15 3.2E-20 122.7 10.2 104 87-194 23-136 (284)
42 CHL00181 cbbX CbbX; Provisiona 99.6 1.7E-15 3.8E-20 122.4 10.4 105 86-194 23-137 (287)
43 PRK00149 dnaA chromosomal repl 99.6 8.7E-16 1.9E-20 131.5 5.9 180 3-195 34-227 (450)
44 TIGR00362 DnaA chromosomal rep 99.6 1.4E-15 3.1E-20 128.6 5.6 178 4-194 29-214 (405)
45 PRK14088 dnaA chromosomal repl 99.6 2.7E-15 5.8E-20 127.9 5.9 171 4-194 31-209 (440)
46 COG2255 RuvB Holliday junction 99.6 8.7E-15 1.9E-19 115.3 7.1 99 80-194 20-118 (332)
47 COG2256 MGS1 ATPase related to 99.5 2E-14 4.4E-19 117.9 8.2 97 80-196 18-121 (436)
48 KOG0744|consensus 99.5 1.1E-14 2.4E-19 116.5 4.7 112 84-195 140-266 (423)
49 PRK12422 chromosomal replicati 99.5 2.2E-14 4.8E-19 122.2 5.5 180 3-194 32-217 (445)
50 TIGR02639 ClpA ATP-dependent C 99.5 1.2E-13 2.7E-18 124.5 10.6 101 82-195 178-290 (731)
51 COG0593 DnaA ATPase involved i 99.5 6.7E-14 1.5E-18 116.7 6.1 158 3-195 26-191 (408)
52 KOG0743|consensus 99.5 3.6E-13 7.9E-18 112.1 9.6 106 82-195 197-302 (457)
53 KOG0736|consensus 99.4 6.7E-12 1.5E-16 110.1 16.5 182 10-196 303-507 (953)
54 CHL00095 clpC Clp protease ATP 99.4 7.3E-13 1.6E-17 120.9 10.4 101 82-195 175-287 (821)
55 PRK14087 dnaA chromosomal repl 99.4 3.3E-13 7.1E-18 115.4 7.4 175 3-194 37-221 (450)
56 PRK00080 ruvB Holliday junctio 99.4 5.9E-13 1.3E-17 109.7 8.6 99 80-194 19-117 (328)
57 PRK04195 replication factor C 99.4 1.2E-12 2.7E-17 113.0 10.8 102 78-194 6-113 (482)
58 PRK05342 clpX ATP-dependent pr 99.4 8E-13 1.7E-17 111.5 9.2 108 87-194 72-188 (412)
59 PF00308 Bac_DnaA: Bacterial d 99.4 9E-13 1.9E-17 102.7 8.4 103 80-194 2-112 (219)
60 TIGR00635 ruvB Holliday juncti 99.4 8.9E-13 1.9E-17 107.5 8.7 95 84-194 2-96 (305)
61 COG3829 RocR Transcriptional r 99.4 2.6E-13 5.6E-18 115.3 4.2 102 79-194 238-355 (560)
62 TIGR00763 lon ATP-dependent pr 99.4 1.6E-12 3.5E-17 118.0 9.5 100 87-194 321-429 (775)
63 PRK10865 protein disaggregatio 99.4 3.1E-12 6.6E-17 117.0 10.8 101 82-195 174-287 (857)
64 PRK13342 recombination factor 99.4 1.6E-12 3.5E-17 110.3 8.4 95 80-194 6-107 (413)
65 PLN03025 replication factor C 99.4 3.1E-12 6.7E-17 105.1 9.0 98 78-194 5-114 (319)
66 PF00158 Sigma54_activat: Sigm 99.3 5.6E-12 1.2E-16 94.3 8.5 94 88-195 1-109 (168)
67 TIGR00382 clpX endopeptidase C 99.3 6.5E-12 1.4E-16 105.7 9.3 108 87-194 78-196 (413)
68 PRK14086 dnaA chromosomal repl 99.3 6.7E-12 1.5E-16 109.6 9.0 107 77-195 279-393 (617)
69 KOG2028|consensus 99.3 3.5E-12 7.6E-17 103.9 6.7 96 81-196 133-239 (554)
70 PRK11034 clpA ATP-dependent Cl 99.3 9E-12 1.9E-16 112.1 9.6 100 83-195 183-294 (758)
71 TIGR03346 chaperone_ClpB ATP-d 99.3 1.5E-11 3.2E-16 112.8 10.7 100 82-194 169-281 (852)
72 PRK14956 DNA polymerase III su 99.3 8.2E-12 1.8E-16 106.4 8.4 104 78-193 10-135 (484)
73 PHA02544 44 clamp loader, smal 99.3 1E-11 2.2E-16 101.8 8.7 101 77-192 12-113 (316)
74 cd00009 AAA The AAA+ (ATPases 99.3 2.1E-11 4.5E-16 87.5 9.2 90 90-192 2-97 (151)
75 PRK14962 DNA polymerase III su 99.3 1.7E-11 3.7E-16 105.2 9.9 98 78-193 6-131 (472)
76 PRK14958 DNA polymerase III su 99.3 8.7E-12 1.9E-16 108.0 8.1 100 77-194 7-134 (509)
77 PRK12402 replication factor C 99.3 2.4E-11 5.2E-16 100.2 10.0 68 77-157 6-78 (337)
78 TIGR03345 VI_ClpV1 type VI sec 99.3 2E-11 4.4E-16 111.5 10.4 101 82-195 183-296 (852)
79 PRK12323 DNA polymerase III su 99.3 1E-11 2.2E-16 108.7 7.7 104 78-193 8-138 (700)
80 TIGR03420 DnaA_homol_Hda DnaA 99.3 2.9E-11 6.4E-16 94.2 9.4 90 82-194 11-105 (226)
81 PRK08903 DnaA regulatory inact 99.3 1.7E-11 3.7E-16 95.9 8.1 89 80-194 12-105 (227)
82 PRK14960 DNA polymerase III su 99.3 1.7E-11 3.8E-16 107.5 8.5 97 79-193 8-132 (702)
83 PRK12377 putative replication 99.3 2.7E-11 5.7E-16 95.9 8.8 72 120-193 101-177 (248)
84 COG3283 TyrR Transcriptional r 99.3 1.4E-11 3E-16 100.3 7.2 177 4-194 120-308 (511)
85 PRK13341 recombination factor 99.3 1.8E-11 4E-16 109.6 8.7 97 78-194 20-124 (725)
86 KOG0989|consensus 99.3 1.4E-11 3E-16 98.2 6.8 103 76-194 26-144 (346)
87 PRK08727 hypothetical protein; 99.2 7.7E-11 1.7E-15 92.7 10.7 93 80-195 13-109 (233)
88 PRK10820 DNA-binding transcrip 99.2 2.4E-11 5.2E-16 105.9 8.4 102 80-195 198-314 (520)
89 PRK08084 DNA replication initi 99.2 6.3E-11 1.4E-15 93.3 10.0 92 80-194 16-112 (235)
90 PRK07003 DNA polymerase III su 99.2 2.2E-11 4.8E-16 108.0 8.2 104 78-193 8-133 (830)
91 TIGR02928 orc1/cdc6 family rep 99.2 8E-11 1.7E-15 98.2 11.1 107 78-193 7-143 (365)
92 PRK14961 DNA polymerase III su 99.2 7.7E-11 1.7E-15 98.5 10.6 105 77-193 7-133 (363)
93 COG0466 Lon ATP-dependent Lon 99.2 4.2E-11 9.1E-16 104.7 9.2 100 87-194 324-432 (782)
94 PRK14949 DNA polymerase III su 99.2 3.1E-11 6.7E-16 108.8 8.4 105 78-194 8-134 (944)
95 smart00382 AAA ATPases associa 99.2 6.1E-11 1.3E-15 84.3 7.8 76 120-195 2-94 (148)
96 PRK14964 DNA polymerase III su 99.2 9.9E-11 2.1E-15 100.5 10.3 97 79-193 6-130 (491)
97 COG1484 DnaC DNA replication p 99.2 6.9E-11 1.5E-15 94.0 8.8 76 118-194 103-182 (254)
98 PRK00411 cdc6 cell division co 99.2 2E-10 4.3E-15 96.8 11.9 106 78-192 22-151 (394)
99 PRK07952 DNA replication prote 99.2 1.2E-10 2.6E-15 92.0 9.5 71 121-193 100-176 (244)
100 PRK07994 DNA polymerase III su 99.2 4.9E-11 1.1E-15 105.3 8.1 105 78-194 8-134 (647)
101 PRK06893 DNA replication initi 99.2 8.4E-11 1.8E-15 92.3 8.6 66 120-195 39-107 (229)
102 COG3604 FhlA Transcriptional r 99.2 2.3E-11 4.9E-16 102.6 5.3 99 82-194 219-332 (550)
103 PRK08181 transposase; Validate 99.2 5.8E-11 1.3E-15 95.0 7.3 75 119-195 105-183 (269)
104 PRK06645 DNA polymerase III su 99.2 1.7E-10 3.6E-15 99.7 10.6 104 78-193 13-142 (507)
105 PRK14963 DNA polymerase III su 99.2 7.9E-11 1.7E-15 101.9 8.6 98 78-193 6-130 (504)
106 PRK05642 DNA replication initi 99.2 1.9E-10 4.2E-15 90.5 10.1 66 120-195 45-113 (234)
107 KOG0742|consensus 99.2 5.9E-11 1.3E-15 98.1 7.3 109 82-196 351-460 (630)
108 PRK11034 clpA ATP-dependent Cl 99.2 4E-11 8.7E-16 107.9 6.9 104 87-194 459-572 (758)
109 PRK14951 DNA polymerase III su 99.2 5.8E-11 1.3E-15 104.5 7.6 105 78-194 8-139 (618)
110 PRK15424 propionate catabolism 99.2 2.2E-11 4.7E-16 105.9 4.7 100 82-195 215-338 (538)
111 PRK08691 DNA polymerase III su 99.2 1.9E-10 4.1E-15 101.7 10.4 104 78-193 8-133 (709)
112 KOG0735|consensus 99.2 7.4E-11 1.6E-15 103.0 7.5 76 118-193 429-508 (952)
113 PRK14969 DNA polymerase III su 99.2 1.2E-10 2.6E-15 101.5 8.4 104 78-193 8-133 (527)
114 TIGR02329 propionate_PrpR prop 99.1 3.4E-11 7.3E-16 104.7 4.8 101 81-195 207-323 (526)
115 PF05673 DUF815: Protein of un 99.1 3.4E-10 7.5E-15 88.4 9.8 91 81-189 22-116 (249)
116 PRK14957 DNA polymerase III su 99.1 2.2E-10 4.7E-15 99.7 9.4 57 78-146 8-64 (546)
117 TIGR02902 spore_lonB ATP-depen 99.1 7.2E-11 1.6E-15 103.0 6.2 66 77-155 56-131 (531)
118 PRK14955 DNA polymerase III su 99.1 3.8E-10 8.3E-15 95.4 10.3 57 78-146 8-64 (397)
119 KOG0991|consensus 99.1 7.8E-11 1.7E-15 91.0 5.4 103 76-194 17-128 (333)
120 PRK08939 primosomal protein Dn 99.1 2.1E-10 4.5E-15 93.6 8.2 73 119-193 155-231 (306)
121 COG2204 AtoC Response regulato 99.1 9.8E-11 2.1E-15 99.3 6.3 98 83-194 138-250 (464)
122 PRK07940 DNA polymerase III su 99.1 1.5E-10 3.2E-15 97.4 7.2 103 84-194 3-132 (394)
123 PRK14952 DNA polymerase III su 99.1 2.9E-10 6.2E-15 99.8 9.0 57 78-146 5-61 (584)
124 PRK10787 DNA-binding ATP-depen 99.1 2.9E-10 6.3E-15 103.0 9.3 101 87-195 323-432 (784)
125 KOG2004|consensus 99.1 3.1E-10 6.6E-15 99.3 8.9 100 86-193 411-519 (906)
126 PRK06835 DNA replication prote 99.1 6.5E-10 1.4E-14 91.4 9.9 72 120-193 183-260 (329)
127 TIGR02639 ClpA ATP-dependent C 99.1 4E-10 8.7E-15 101.9 9.5 98 87-194 455-568 (731)
128 COG1219 ClpX ATP-dependent pro 99.1 2.2E-10 4.8E-15 91.9 6.7 103 88-196 63-179 (408)
129 PRK14959 DNA polymerase III su 99.1 5.1E-10 1.1E-14 98.3 9.5 58 77-146 7-64 (624)
130 PRK14970 DNA polymerase III su 99.1 3.1E-10 6.8E-15 94.9 7.8 105 77-193 8-122 (367)
131 PF01695 IstB_IS21: IstB-like 99.1 8E-11 1.7E-15 88.9 3.8 74 118-193 45-122 (178)
132 TIGR01817 nifA Nif-specific re 99.1 2.3E-10 4.9E-15 100.2 7.0 100 82-195 192-306 (534)
133 PRK05896 DNA polymerase III su 99.1 4.9E-10 1.1E-14 98.0 8.9 58 77-146 7-64 (605)
134 TIGR02640 gas_vesic_GvpN gas v 99.1 4.9E-10 1.1E-14 89.6 8.3 38 118-155 19-56 (262)
135 PTZ00112 origin recognition co 99.1 9.4E-10 2E-14 98.9 10.6 110 78-195 747-885 (1164)
136 TIGR02974 phageshock_pspF psp 99.1 3.2E-10 7E-15 93.5 7.2 94 88-195 1-109 (329)
137 PRK07764 DNA polymerase III su 99.1 4.6E-10 9.9E-15 101.9 8.8 57 78-146 7-63 (824)
138 PRK06526 transposase; Provisio 99.1 1.5E-10 3.2E-15 92.1 5.0 75 118-194 96-174 (254)
139 COG0542 clpA ATP-binding subun 99.1 1.7E-10 3.7E-15 102.8 5.8 102 86-193 491-607 (786)
140 PRK11608 pspF phage shock prot 99.1 2.7E-10 5.8E-15 93.9 6.6 97 85-195 5-116 (326)
141 TIGR03345 VI_ClpV1 type VI sec 99.1 5.8E-10 1.3E-14 102.0 9.1 103 86-194 566-683 (852)
142 PRK14965 DNA polymerase III su 99.1 1E-09 2.2E-14 96.7 10.3 98 78-193 8-133 (576)
143 PRK08116 hypothetical protein; 99.1 1E-09 2.3E-14 88.0 9.5 70 120-191 114-190 (268)
144 PRK05563 DNA polymerase III su 99.1 1.2E-09 2.7E-14 95.8 10.7 104 78-193 8-133 (559)
145 COG1221 PspF Transcriptional r 99.1 8.4E-11 1.8E-15 98.1 3.1 101 81-195 73-189 (403)
146 TIGR02397 dnaX_nterm DNA polym 99.1 1.8E-09 3.9E-14 89.7 10.9 98 78-193 6-131 (355)
147 PRK00440 rfc replication facto 99.0 9.1E-10 2E-14 90.0 8.9 99 76-193 7-116 (319)
148 PHA02244 ATPase-like protein 99.0 1.2E-09 2.7E-14 90.2 9.3 76 118-194 117-195 (383)
149 PRK14954 DNA polymerase III su 99.0 1.5E-09 3.3E-14 95.8 10.5 57 78-146 8-64 (620)
150 COG1474 CDC6 Cdc6-related prot 99.0 2.2E-09 4.8E-14 89.5 10.9 107 80-195 11-139 (366)
151 PRK15429 formate hydrogenlyase 99.0 3.3E-10 7.2E-15 101.9 6.4 98 83-194 373-485 (686)
152 PRK14948 DNA polymerase III su 99.0 1.5E-09 3.2E-14 96.2 9.4 104 78-193 8-135 (620)
153 PRK06620 hypothetical protein; 99.0 1.2E-09 2.6E-14 84.9 7.8 84 80-191 10-97 (214)
154 PRK06647 DNA polymerase III su 99.0 1.3E-09 2.9E-14 95.5 8.8 104 78-193 8-133 (563)
155 TIGR00390 hslU ATP-dependent p 99.0 1.4E-09 3E-14 91.3 8.5 89 87-175 13-104 (441)
156 PRK05022 anaerobic nitric oxid 99.0 2.3E-10 5.1E-15 99.5 4.1 98 84-195 185-297 (509)
157 PF07724 AAA_2: AAA domain (Cd 99.0 5.2E-10 1.1E-14 83.9 5.3 73 119-193 2-82 (171)
158 PRK11388 DNA-binding transcrip 99.0 6.3E-10 1.4E-14 99.4 6.6 100 82-195 321-432 (638)
159 PRK06305 DNA polymerase III su 99.0 1.7E-09 3.8E-14 92.6 9.0 57 78-146 9-65 (451)
160 PRK06921 hypothetical protein; 99.0 2.1E-09 4.6E-14 86.1 8.5 69 119-190 116-188 (266)
161 PRK07133 DNA polymerase III su 99.0 1.5E-09 3.2E-14 96.8 8.3 105 77-193 9-132 (725)
162 PRK09183 transposase/IS protei 99.0 7.9E-10 1.7E-14 88.3 6.0 77 118-195 100-180 (259)
163 PRK14953 DNA polymerase III su 99.0 4.1E-09 8.9E-14 91.0 10.8 57 78-146 8-64 (486)
164 PRK09111 DNA polymerase III su 99.0 1.9E-09 4.1E-14 95.0 8.8 105 77-193 15-146 (598)
165 PRK14950 DNA polymerase III su 99.0 3.5E-09 7.5E-14 93.6 10.4 57 78-146 8-64 (585)
166 KOG0745|consensus 99.0 1.1E-09 2.4E-14 91.1 6.6 75 120-194 226-306 (564)
167 PRK05201 hslU ATP-dependent pr 99.0 1.1E-09 2.4E-14 91.8 6.8 90 87-176 16-108 (443)
168 PF01078 Mg_chelatase: Magnesi 99.0 3.1E-10 6.6E-15 86.8 2.8 45 85-144 2-46 (206)
169 TIGR02903 spore_lon_C ATP-depe 99.0 3.5E-09 7.5E-14 94.0 9.8 64 80-156 148-221 (615)
170 PF14532 Sigma54_activ_2: Sigm 99.0 2.9E-10 6.3E-15 82.3 2.5 82 89-195 1-85 (138)
171 COG0542 clpA ATP-binding subun 98.9 7.6E-09 1.7E-13 92.5 10.8 101 82-195 166-278 (786)
172 PRK10865 protein disaggregatio 98.9 3.4E-09 7.5E-14 97.2 8.7 106 85-194 567-685 (857)
173 TIGR01650 PD_CobS cobaltochela 98.9 9.1E-10 2E-14 89.9 4.0 75 119-194 63-149 (327)
174 KOG1969|consensus 98.9 3.2E-09 6.9E-14 93.2 7.5 111 80-192 265-400 (877)
175 CHL00095 clpC Clp protease ATP 98.9 4.2E-09 9.1E-14 96.4 8.4 103 86-194 509-626 (821)
176 PRK08451 DNA polymerase III su 98.9 5.3E-09 1.2E-13 90.8 7.9 56 78-145 6-61 (535)
177 TIGR03346 chaperone_ClpB ATP-d 98.9 1.2E-08 2.6E-13 93.8 9.9 103 86-194 565-682 (852)
178 PRK13531 regulatory ATPase Rav 98.9 5.7E-09 1.2E-13 89.1 7.2 94 87-195 21-123 (498)
179 PF07728 AAA_5: AAA domain (dy 98.8 4.1E-09 8.8E-14 76.1 5.0 71 122-193 1-79 (139)
180 PRK14971 DNA polymerase III su 98.8 3.3E-08 7.1E-13 87.7 11.0 104 78-193 9-135 (614)
181 PF13173 AAA_14: AAA domain 98.8 1.1E-08 2.4E-13 73.0 6.5 70 121-192 3-74 (128)
182 COG2607 Predicted ATPase (AAA+ 98.8 3.7E-08 8.1E-13 76.5 9.6 92 81-190 55-150 (287)
183 KOG0741|consensus 98.8 1.1E-08 2.5E-13 87.1 6.6 73 120-192 538-611 (744)
184 CHL00081 chlI Mg-protoporyphyr 98.8 4.8E-09 1E-13 86.8 3.8 52 80-144 11-62 (350)
185 PRK09087 hypothetical protein; 98.8 1E-08 2.2E-13 80.3 5.4 57 120-192 44-100 (226)
186 PF13401 AAA_22: AAA domain; P 98.8 2.4E-08 5.1E-13 71.1 6.6 72 120-191 4-99 (131)
187 COG0464 SpoVK ATPases of the A 98.8 2E-08 4.3E-13 87.3 7.4 91 105-196 3-93 (494)
188 PRK13407 bchI magnesium chelat 98.8 4.5E-09 9.7E-14 86.6 3.1 51 81-144 3-53 (334)
189 PF06068 TIP49: TIP49 C-termin 98.8 2.3E-08 5E-13 82.3 7.1 85 82-175 20-106 (398)
190 TIGR02442 Cob-chelat-sub cobal 98.7 7.9E-09 1.7E-13 92.1 4.4 49 83-144 1-49 (633)
191 TIGR00602 rad24 checkpoint pro 98.7 2.7E-08 5.9E-13 88.0 7.5 66 75-148 73-138 (637)
192 COG2812 DnaX DNA polymerase II 98.7 9.3E-09 2E-13 88.5 3.7 104 79-194 9-134 (515)
193 PRK05564 DNA polymerase III su 98.7 4.4E-08 9.6E-13 80.3 7.5 94 84-193 2-107 (313)
194 smart00763 AAA_PrkA PrkA AAA d 98.7 6.2E-08 1.3E-12 80.1 7.9 82 87-175 52-144 (361)
195 COG0470 HolB ATPase involved i 98.7 4E-08 8.6E-13 80.4 6.7 95 87-194 2-124 (325)
196 COG1224 TIP49 DNA helicase TIP 98.7 6.5E-08 1.4E-12 79.0 7.4 86 81-175 34-121 (450)
197 PRK11331 5-methylcytosine-spec 98.6 1.2E-07 2.6E-12 80.5 8.4 76 119-194 193-287 (459)
198 PRK07471 DNA polymerase III su 98.6 9.2E-08 2E-12 79.9 7.3 51 82-144 15-65 (365)
199 COG0714 MoxR-like ATPases [Gen 98.6 7.7E-08 1.7E-12 79.4 6.5 92 88-194 26-127 (329)
200 TIGR00368 Mg chelatase-related 98.6 3.3E-08 7.3E-13 85.6 4.0 47 83-144 189-235 (499)
201 PRK10923 glnG nitrogen regulat 98.6 1.2E-07 2.5E-12 81.9 6.7 98 84-195 136-248 (469)
202 PHA00729 NTP-binding motif con 98.6 6.6E-08 1.4E-12 75.2 4.6 25 121-145 18-42 (226)
203 PRK09112 DNA polymerase III su 98.6 2.3E-07 4.9E-12 77.2 8.1 53 82-146 19-71 (351)
204 KOG1051|consensus 98.5 4.2E-07 9.1E-12 82.6 9.0 101 86-193 562-674 (898)
205 TIGR02915 PEP_resp_reg putativ 98.5 3.4E-08 7.3E-13 84.6 2.0 98 84-195 137-249 (445)
206 cd01120 RecA-like_NTPases RecA 98.5 3.8E-07 8.3E-12 66.7 7.3 71 123-193 2-99 (165)
207 COG0606 Predicted ATPase with 98.5 2.8E-08 6.1E-13 83.9 1.3 47 82-143 175-221 (490)
208 TIGR00678 holB DNA polymerase 98.5 6E-07 1.3E-11 68.2 8.3 76 119-194 13-111 (188)
209 PRK11361 acetoacetate metaboli 98.5 3.7E-07 8E-12 78.4 6.9 98 84-195 141-253 (457)
210 PRK07399 DNA polymerase III su 98.4 3.3E-07 7.2E-12 75.2 5.6 49 84-144 2-50 (314)
211 TIGR02030 BchI-ChlI magnesium 98.4 2.9E-07 6.3E-12 76.1 5.0 49 83-144 1-49 (337)
212 PRK08058 DNA polymerase III su 98.4 4.5E-07 9.8E-12 74.9 6.1 50 84-145 3-53 (329)
213 TIGR02237 recomb_radB DNA repa 98.4 9.3E-07 2E-11 68.2 6.8 77 116-192 8-110 (209)
214 cd01129 PulE-GspE PulE/GspE Th 98.4 1.6E-06 3.4E-11 69.5 8.4 94 83-190 57-160 (264)
215 TIGR02688 conserved hypothetic 98.4 8.6E-07 1.9E-11 74.6 6.5 67 118-196 207-277 (449)
216 COG2804 PulE Type II secretory 98.4 2.5E-06 5.4E-11 72.9 9.2 96 81-190 233-338 (500)
217 PF13207 AAA_17: AAA domain; P 98.4 4.7E-07 1E-11 63.6 4.1 31 123-153 2-32 (121)
218 PF01637 Arch_ATPase: Archaeal 98.4 7.3E-07 1.6E-11 69.1 5.4 43 89-144 2-44 (234)
219 PRK15115 response regulator Gl 98.3 9.4E-07 2E-11 75.7 6.5 75 118-195 155-244 (444)
220 TIGR02782 TrbB_P P-type conjug 98.3 5.5E-07 1.2E-11 73.4 4.6 71 119-189 131-214 (299)
221 TIGR03015 pepcterm_ATPase puta 98.3 5.2E-06 1.1E-10 66.3 10.2 26 120-145 43-68 (269)
222 PF00437 T2SE: Type II/IV secr 98.3 6.1E-07 1.3E-11 72.0 4.8 98 82-190 100-208 (270)
223 PF12774 AAA_6: Hydrolytic ATP 98.3 1.6E-06 3.5E-11 68.0 7.0 68 119-193 31-98 (231)
224 PRK08118 topology modulation p 98.3 1.9E-06 4E-11 64.4 7.0 32 122-153 3-34 (167)
225 cd01131 PilT Pilus retraction 98.3 1.5E-06 3.3E-11 66.6 6.5 68 122-189 3-84 (198)
226 COG1618 Predicted nucleotide k 98.3 2.2E-06 4.7E-11 62.9 6.8 26 119-144 4-29 (179)
227 PRK07261 topology modulation p 98.3 2E-06 4.3E-11 64.5 6.8 33 122-154 2-34 (171)
228 PF03215 Rad17: Rad17 cell cyc 98.3 1.4E-06 3.1E-11 75.8 6.8 69 76-152 9-77 (519)
229 TIGR01420 pilT_fam pilus retra 98.3 1.9E-06 4.2E-11 71.6 7.3 71 119-189 121-205 (343)
230 COG2805 PilT Tfp pilus assembl 98.3 4E-06 8.7E-11 67.3 8.7 73 118-190 123-209 (353)
231 PF13177 DNA_pol3_delta2: DNA 98.3 2.4E-06 5.1E-11 63.5 6.9 90 90-194 1-117 (162)
232 COG4650 RtcR Sigma54-dependent 98.3 2.2E-06 4.7E-11 68.9 6.9 76 117-195 205-298 (531)
233 TIGR00764 lon_rel lon-related 98.3 2.9E-06 6.3E-11 75.4 7.8 84 82-180 14-107 (608)
234 PF07726 AAA_3: ATPase family 98.3 8.5E-07 1.8E-11 62.9 3.4 70 122-195 1-78 (131)
235 PRK11823 DNA repair protein Ra 98.3 2.5E-06 5.5E-11 73.2 6.9 78 116-193 76-170 (446)
236 cd01124 KaiC KaiC is a circadi 98.3 2.7E-06 5.8E-11 64.1 6.3 31 123-153 2-35 (187)
237 TIGR02012 tigrfam_recA protein 98.2 4.3E-06 9.4E-11 68.5 7.9 78 117-194 52-148 (321)
238 cd01121 Sms Sms (bacterial rad 98.2 2.1E-06 4.6E-11 71.9 6.0 77 117-193 79-172 (372)
239 TIGR01818 ntrC nitrogen regula 98.2 2.3E-06 5E-11 73.6 6.5 95 87-195 135-244 (463)
240 TIGR02533 type_II_gspE general 98.2 5.3E-06 1.1E-10 71.9 8.5 95 82-190 218-322 (486)
241 PRK13900 type IV secretion sys 98.2 3.5E-06 7.6E-11 69.6 6.9 73 118-190 158-246 (332)
242 PF13191 AAA_16: AAA ATPase do 98.2 1.2E-06 2.6E-11 65.7 3.9 59 88-156 2-63 (185)
243 COG1220 HslU ATP-dependent pro 98.2 5.8E-06 1.3E-10 67.4 7.7 71 87-157 16-87 (444)
244 PRK13833 conjugal transfer pro 98.2 1.7E-06 3.6E-11 71.1 4.7 71 119-189 143-225 (323)
245 cd00983 recA RecA is a bacter 98.2 6.9E-06 1.5E-10 67.4 8.2 78 117-194 52-148 (325)
246 PF05621 TniB: Bacterial TniB 98.2 1.3E-05 2.8E-10 64.8 9.5 100 87-193 35-159 (302)
247 PRK13894 conjugal transfer ATP 98.2 1.9E-06 4E-11 70.9 4.7 72 118-189 146-229 (319)
248 PRK04296 thymidine kinase; Pro 98.2 6.9E-06 1.5E-10 62.6 7.4 71 122-193 4-92 (190)
249 PRK10436 hypothetical protein; 98.2 7.1E-06 1.5E-10 70.6 8.1 95 82-190 194-298 (462)
250 TIGR02525 plasmid_TraJ plasmid 98.2 5.4E-06 1.2E-10 69.4 7.1 71 120-190 149-236 (372)
251 KOG2170|consensus 98.2 6.4E-06 1.4E-10 66.1 7.1 97 88-193 84-192 (344)
252 cd01130 VirB11-like_ATPase Typ 98.2 3.5E-06 7.5E-11 64.0 5.4 72 118-189 23-110 (186)
253 PF00910 RNA_helicase: RNA hel 98.2 7.4E-07 1.6E-11 61.6 1.5 23 123-145 1-23 (107)
254 PRK08533 flagellar accessory p 98.2 7.9E-06 1.7E-10 64.2 7.4 38 117-154 21-61 (230)
255 COG3854 SpoIIIAA ncharacterize 98.2 9.7E-06 2.1E-10 63.0 7.6 73 119-191 136-230 (308)
256 PF13671 AAA_33: AAA domain; P 98.2 8.8E-06 1.9E-10 58.6 7.1 35 123-159 2-36 (143)
257 KOG1970|consensus 98.2 1.3E-05 2.7E-10 69.1 9.0 71 76-152 72-142 (634)
258 KOG0990|consensus 98.2 4.6E-07 1E-11 73.1 0.2 104 75-194 30-146 (360)
259 PRK09361 radB DNA repair and r 98.1 9.1E-06 2E-10 63.4 7.5 39 116-154 19-60 (225)
260 PRK15455 PrkA family serine pr 98.1 3E-06 6.6E-11 73.9 5.1 63 83-152 73-136 (644)
261 smart00350 MCM minichromosome 98.1 1.5E-06 3.2E-11 75.9 3.2 72 120-194 236-315 (509)
262 PF00931 NB-ARC: NB-ARC domain 98.1 2.3E-05 5.1E-10 63.0 9.9 89 92-191 2-113 (287)
263 PF06309 Torsin: Torsin; Inte 98.1 4.8E-06 1E-10 58.9 5.1 53 86-144 25-77 (127)
264 PRK00131 aroK shikimate kinase 98.1 3.3E-06 7.2E-11 62.8 4.5 34 119-152 3-36 (175)
265 KOG1942|consensus 98.1 6.5E-06 1.4E-10 66.1 6.1 83 84-175 36-120 (456)
266 PHA02624 large T antigen; Prov 98.1 1.3E-05 2.9E-10 70.2 8.5 40 116-155 427-466 (647)
267 KOG2227|consensus 98.1 3.2E-05 6.9E-10 65.5 10.4 109 79-196 143-273 (529)
268 PRK06067 flagellar accessory p 98.1 9.1E-06 2E-10 63.8 6.9 39 116-154 21-62 (234)
269 PF03969 AFG1_ATPase: AFG1-lik 98.1 5.1E-06 1.1E-10 69.4 5.4 73 117-190 59-138 (362)
270 PRK13764 ATPase; Provisional 98.1 7.4E-06 1.6E-10 72.3 6.7 71 119-190 256-335 (602)
271 TIGR02538 type_IV_pilB type IV 98.1 1.5E-05 3.2E-10 70.4 8.5 94 83-190 293-396 (564)
272 PRK05707 DNA polymerase III su 98.1 6.3E-06 1.4E-10 68.1 5.7 73 118-193 20-120 (328)
273 PRK10365 transcriptional regul 98.1 8.3E-06 1.8E-10 69.7 6.6 75 118-195 160-249 (441)
274 PF05729 NACHT: NACHT domain 98.1 8.2E-06 1.8E-10 59.9 5.7 73 122-194 2-96 (166)
275 cd01128 rho_factor Transcripti 98.1 9.5E-06 2.1E-10 64.4 6.3 30 117-146 13-42 (249)
276 PRK13851 type IV secretion sys 98.1 7.3E-06 1.6E-10 68.0 5.8 73 117-189 159-246 (344)
277 PRK06762 hypothetical protein; 98.1 2.4E-05 5.3E-10 58.0 8.1 38 121-158 3-40 (166)
278 KOG1514|consensus 98.1 1.7E-05 3.6E-10 70.1 8.1 103 86-196 396-525 (767)
279 KOG3347|consensus 98.1 4.5E-06 9.7E-11 60.5 3.7 34 119-152 6-39 (176)
280 TIGR01618 phage_P_loop phage n 98.1 2.5E-06 5.4E-11 66.4 2.5 22 120-141 12-33 (220)
281 TIGR02788 VirB11 P-type DNA tr 98.1 1.3E-05 2.8E-10 65.7 6.9 74 117-190 141-229 (308)
282 PRK09862 putative ATP-dependen 98.0 3.5E-06 7.7E-11 73.0 3.5 46 84-144 189-234 (506)
283 PF13604 AAA_30: AAA domain; P 98.0 7.1E-05 1.5E-09 57.3 10.3 34 120-153 18-54 (196)
284 COG3284 AcoR Transcriptional a 98.0 2.8E-06 6.1E-11 74.0 2.6 73 118-193 334-421 (606)
285 PRK09376 rho transcription ter 98.0 1.4E-05 3E-10 67.0 6.5 27 118-144 167-193 (416)
286 PRK09354 recA recombinase A; P 98.0 2.4E-05 5.3E-10 64.8 7.8 77 117-193 57-152 (349)
287 PRK03839 putative kinase; Prov 98.0 6E-06 1.3E-10 62.2 3.9 31 122-152 2-32 (180)
288 TIGR02031 BchD-ChlD magnesium 98.0 6E-06 1.3E-10 73.2 4.5 73 120-195 16-100 (589)
289 PRK13947 shikimate kinase; Pro 98.0 7.4E-06 1.6E-10 61.0 4.1 31 122-152 3-33 (171)
290 PF09848 DUF2075: Uncharacteri 98.0 1.2E-05 2.6E-10 67.0 5.8 23 122-144 3-25 (352)
291 PRK10536 hypothetical protein; 98.0 6.4E-05 1.4E-09 59.7 9.5 23 121-143 75-97 (262)
292 COG4619 ABC-type uncharacteriz 98.0 2.1E-05 4.6E-10 58.4 6.2 28 117-144 26-53 (223)
293 TIGR00416 sms DNA repair prote 98.0 1.8E-05 4E-10 68.1 6.7 78 116-193 90-184 (454)
294 cd00046 DEXDc DEAD-like helica 98.0 2.2E-05 4.8E-10 55.3 6.0 23 122-144 2-24 (144)
295 PRK00625 shikimate kinase; Pro 98.0 9.1E-06 2E-10 61.0 4.0 31 122-152 2-32 (173)
296 PRK06217 hypothetical protein; 98.0 9.5E-06 2.1E-10 61.4 4.1 31 122-152 3-33 (183)
297 TIGR03877 thermo_KaiC_1 KaiC d 98.0 4.8E-05 1E-09 60.0 8.2 39 116-154 17-58 (237)
298 cd03283 ABC_MutS-like MutS-lik 97.9 3.6E-05 7.8E-10 59.1 7.3 24 119-142 24-47 (199)
299 PRK06871 DNA polymerase III su 97.9 3.9E-05 8.5E-10 63.2 7.9 28 118-145 22-49 (325)
300 PHA02774 E1; Provisional 97.9 3.4E-05 7.3E-10 67.5 7.7 37 117-153 431-468 (613)
301 cd00464 SK Shikimate kinase (S 97.9 1.1E-05 2.4E-10 58.9 4.1 31 122-152 1-31 (154)
302 TIGR02858 spore_III_AA stage I 97.9 2E-05 4.3E-10 63.3 5.7 69 121-189 112-204 (270)
303 TIGR01359 UMP_CMP_kin_fam UMP- 97.9 1.2E-05 2.7E-10 60.5 4.0 29 123-151 2-30 (183)
304 TIGR03499 FlhF flagellar biosy 97.9 0.00012 2.6E-09 59.2 9.9 67 120-188 194-281 (282)
305 cd01394 radB RadB. The archaea 97.9 3.9E-05 8.4E-10 59.5 6.8 39 116-154 15-56 (218)
306 PRK14532 adenylate kinase; Pro 97.9 1.3E-05 2.9E-10 60.7 4.0 30 122-151 2-31 (188)
307 PF12775 AAA_7: P-loop contain 97.9 1.4E-05 2.9E-10 64.4 4.2 28 118-145 31-58 (272)
308 COG0563 Adk Adenylate kinase a 97.9 2E-05 4.2E-10 59.5 4.7 27 122-148 2-28 (178)
309 PRK07993 DNA polymerase III su 97.9 5.5E-05 1.2E-09 62.7 7.6 28 118-145 22-49 (334)
310 PLN03210 Resistant to P. syrin 97.9 4.7E-05 1E-09 72.7 8.1 52 83-145 181-232 (1153)
311 PRK13949 shikimate kinase; Pro 97.9 1.4E-05 3.1E-10 59.8 3.8 31 122-152 3-33 (169)
312 cd00227 CPT Chloramphenicol (C 97.9 1.5E-05 3.3E-10 59.8 3.8 34 121-154 3-36 (175)
313 TIGR02524 dot_icm_DotB Dot/Icm 97.9 4.6E-05 9.9E-10 63.7 7.0 72 119-190 133-223 (358)
314 PRK00771 signal recognition pa 97.9 0.00014 3.1E-09 62.2 10.1 73 119-193 94-189 (437)
315 cd02021 GntK Gluconate kinase 97.9 1.7E-05 3.7E-10 57.8 4.0 28 123-150 2-29 (150)
316 cd03221 ABCF_EF-3 ABCF_EF-3 E 97.9 5E-05 1.1E-09 55.2 6.3 71 117-189 23-98 (144)
317 PRK14974 cell division protein 97.9 0.00024 5.2E-09 58.8 11.0 74 120-193 140-236 (336)
318 PF01745 IPT: Isopentenyl tran 97.9 1.2E-05 2.5E-10 61.9 3.0 36 123-158 4-39 (233)
319 TIGR01313 therm_gnt_kin carboh 97.8 1.8E-05 3.8E-10 58.6 3.9 29 123-151 1-29 (163)
320 PRK13765 ATP-dependent proteas 97.8 2.3E-05 5E-10 69.9 5.2 51 80-145 25-75 (637)
321 PRK12723 flagellar biosynthesi 97.8 0.00022 4.8E-09 60.1 10.8 72 120-193 174-268 (388)
322 PRK14530 adenylate kinase; Pro 97.8 2.2E-05 4.8E-10 60.9 4.5 31 121-151 4-34 (215)
323 PRK14531 adenylate kinase; Pro 97.8 2.1E-05 4.6E-10 59.5 4.3 31 121-151 3-33 (183)
324 COG1066 Sms Predicted ATP-depe 97.8 6.5E-05 1.4E-09 62.9 7.1 78 117-194 90-183 (456)
325 cd01428 ADK Adenylate kinase ( 97.8 2.1E-05 4.6E-10 59.6 4.0 29 123-151 2-30 (194)
326 PRK04132 replication factor C 97.8 3.2E-05 6.8E-10 70.8 5.7 66 123-194 567-645 (846)
327 PRK13948 shikimate kinase; Pro 97.8 2.7E-05 5.8E-10 59.0 4.5 35 118-152 8-42 (182)
328 TIGR03574 selen_PSTK L-seryl-t 97.8 5.5E-05 1.2E-09 60.0 6.4 34 123-156 2-38 (249)
329 cd02020 CMPK Cytidine monophos 97.8 2.3E-05 5E-10 56.6 3.8 30 123-152 2-31 (147)
330 PF08433 KTI12: Chromatin asso 97.8 7.2E-05 1.6E-09 60.1 6.9 69 123-192 4-83 (270)
331 PRK06547 hypothetical protein; 97.8 3.5E-05 7.5E-10 57.9 4.7 35 118-152 13-47 (172)
332 PF00448 SRP54: SRP54-type pro 97.8 9.5E-05 2E-09 56.7 7.2 73 121-193 2-97 (196)
333 PRK11889 flhF flagellar biosyn 97.8 0.00033 7.1E-09 59.0 10.8 74 120-193 241-334 (436)
334 PLN02674 adenylate kinase 97.8 6.7E-05 1.4E-09 59.3 6.4 38 118-157 29-66 (244)
335 COG0703 AroK Shikimate kinase 97.8 2.3E-05 4.9E-10 58.4 3.5 32 121-152 3-34 (172)
336 TIGR03878 thermo_KaiC_2 KaiC d 97.8 9.8E-05 2.1E-09 59.0 7.3 39 116-154 32-73 (259)
337 COG1373 Predicted ATPase (AAA+ 97.8 0.0001 2.3E-09 62.4 7.9 70 122-193 39-108 (398)
338 cd00561 CobA_CobO_BtuR ATP:cor 97.8 9.6E-05 2.1E-09 54.6 6.7 29 122-150 4-35 (159)
339 TIGR00767 rho transcription te 97.8 9.4E-05 2E-09 62.3 7.4 28 117-144 165-192 (415)
340 PRK04328 hypothetical protein; 97.8 0.00014 3.1E-09 57.8 8.1 38 116-153 19-59 (249)
341 PTZ00111 DNA replication licen 97.8 2.1E-05 4.6E-10 71.9 3.7 74 118-194 490-572 (915)
342 PRK05057 aroK shikimate kinase 97.8 4E-05 8.6E-10 57.5 4.6 34 120-153 4-37 (172)
343 PTZ00088 adenylate kinase 1; P 97.8 3.8E-05 8.2E-10 60.3 4.6 33 120-152 6-38 (229)
344 TIGR00064 ftsY signal recognit 97.8 0.00042 9.1E-09 55.8 10.6 74 119-192 71-167 (272)
345 cd01123 Rad51_DMC1_radA Rad51_ 97.8 9.2E-05 2E-09 58.0 6.7 40 116-155 15-63 (235)
346 COG1102 Cmk Cytidylate kinase 97.7 3.2E-05 7E-10 56.8 3.6 28 123-150 3-30 (179)
347 cd03216 ABC_Carb_Monos_I This 97.7 9.4E-05 2E-09 54.9 6.2 73 117-189 23-110 (163)
348 cd03281 ABC_MSH5_euk MutS5 hom 97.7 0.00016 3.5E-09 56.1 7.7 21 121-141 30-50 (213)
349 PRK03731 aroL shikimate kinase 97.7 4.2E-05 9E-10 57.0 4.3 32 121-152 3-34 (171)
350 TIGR02655 circ_KaiC circadian 97.7 8.6E-05 1.9E-09 64.5 6.8 76 116-191 259-365 (484)
351 cd01393 recA_like RecA is a b 97.7 0.00013 2.8E-09 56.7 7.2 40 116-155 15-63 (226)
352 PF01583 APS_kinase: Adenylyls 97.7 7.3E-05 1.6E-09 55.1 5.3 40 121-160 3-45 (156)
353 cd03222 ABC_RNaseL_inhibitor T 97.7 5.9E-05 1.3E-09 56.9 5.0 72 117-189 22-99 (177)
354 cd00544 CobU Adenosylcobinamid 97.7 0.0001 2.2E-09 55.2 6.2 32 123-154 2-33 (169)
355 PRK14722 flhF flagellar biosyn 97.7 0.00012 2.6E-09 61.4 7.2 74 118-193 135-229 (374)
356 TIGR03881 KaiC_arch_4 KaiC dom 97.7 7.1E-05 1.5E-09 58.5 5.6 40 116-155 16-58 (229)
357 TIGR00150 HI0065_YjeE ATPase, 97.7 0.00011 2.4E-09 52.7 6.0 29 118-146 20-48 (133)
358 PRK13946 shikimate kinase; Pro 97.7 3.9E-05 8.4E-10 58.1 3.9 34 119-152 9-42 (184)
359 TIGR03819 heli_sec_ATPase heli 97.7 4.3E-05 9.3E-10 63.4 4.4 72 118-189 176-263 (340)
360 PLN02200 adenylate kinase fami 97.7 5.2E-05 1.1E-09 59.7 4.6 38 118-157 41-78 (234)
361 PF13245 AAA_19: Part of AAA d 97.7 8.4E-05 1.8E-09 48.1 4.8 33 121-153 11-50 (76)
362 PRK14528 adenylate kinase; Pro 97.7 4.3E-05 9.3E-10 58.0 4.0 30 122-151 3-32 (186)
363 PRK08154 anaerobic benzoate ca 97.7 0.00021 4.5E-09 58.6 8.2 36 117-152 130-165 (309)
364 PRK08699 DNA polymerase III su 97.7 7.8E-05 1.7E-09 61.5 5.7 28 118-145 19-46 (325)
365 PRK08769 DNA polymerase III su 97.7 0.00013 2.9E-09 59.9 6.9 28 118-145 24-51 (319)
366 PF13479 AAA_24: AAA domain 97.7 0.0001 2.2E-09 57.2 6.0 67 120-191 3-80 (213)
367 TIGR01360 aden_kin_iso1 adenyl 97.7 4.8E-05 1.1E-09 57.3 4.1 29 122-150 5-33 (188)
368 cd02019 NK Nucleoside/nucleoti 97.7 8.6E-05 1.9E-09 47.0 4.5 30 123-152 2-32 (69)
369 COG4962 CpaF Flp pilus assembl 97.7 4E-05 8.7E-10 62.8 3.7 71 118-188 171-257 (355)
370 PF13238 AAA_18: AAA domain; P 97.7 3.5E-05 7.6E-10 54.2 3.0 22 123-144 1-22 (129)
371 TIGR01351 adk adenylate kinase 97.7 4.5E-05 9.8E-10 58.9 3.8 29 123-151 2-30 (210)
372 COG1936 Predicted nucleotide k 97.7 3.5E-05 7.7E-10 57.2 3.0 30 122-152 2-31 (180)
373 cd03115 SRP The signal recogni 97.7 0.00029 6.2E-09 52.6 8.1 32 123-154 3-37 (173)
374 PRK02496 adk adenylate kinase; 97.7 4.7E-05 1E-09 57.5 3.8 30 122-151 3-32 (184)
375 PRK06696 uridine kinase; Valid 97.7 0.00016 3.6E-09 56.4 6.9 37 119-155 21-60 (223)
376 PRK14527 adenylate kinase; Pro 97.7 4.4E-05 9.5E-10 58.1 3.6 33 118-150 4-36 (191)
377 PF01443 Viral_helicase1: Vira 97.7 3.2E-05 7E-10 60.3 2.9 22 123-144 1-22 (234)
378 PRK06090 DNA polymerase III su 97.6 0.00023 5E-09 58.5 7.7 27 118-144 23-49 (319)
379 PRK00279 adk adenylate kinase; 97.6 6E-05 1.3E-09 58.5 4.0 30 122-151 2-31 (215)
380 cd03243 ABC_MutS_homologs The 97.6 0.00026 5.7E-09 54.3 7.5 23 119-141 28-50 (202)
381 PRK05800 cobU adenosylcobinami 97.6 0.00013 2.8E-09 54.7 5.6 33 122-154 3-35 (170)
382 COG1485 Predicted ATPase [Gene 97.6 0.00018 3.9E-09 59.1 6.7 29 118-146 63-91 (367)
383 PF06414 Zeta_toxin: Zeta toxi 97.6 0.00026 5.7E-09 54.2 7.4 43 118-160 13-56 (199)
384 smart00534 MUTSac ATPase domai 97.6 0.00034 7.3E-09 53.0 7.8 19 123-141 2-20 (185)
385 TIGR02768 TraA_Ti Ti-type conj 97.6 0.0003 6.5E-09 64.2 8.8 74 120-193 368-453 (744)
386 PHA02530 pseT polynucleotide k 97.6 0.00023 5E-09 57.8 7.4 34 122-157 4-38 (300)
387 PF13086 AAA_11: AAA domain; P 97.6 7.1E-05 1.5E-09 57.9 4.2 23 122-144 19-41 (236)
388 PF08298 AAA_PrkA: PrkA AAA do 97.6 0.00025 5.3E-09 58.6 7.4 53 86-145 61-113 (358)
389 PRK12724 flagellar biosynthesi 97.6 0.00093 2E-08 56.8 11.0 72 120-191 223-311 (432)
390 PRK10416 signal recognition pa 97.6 0.001 2.2E-08 54.8 10.9 75 119-193 113-210 (318)
391 cd00267 ABC_ATPase ABC (ATP-bi 97.6 0.00024 5.2E-09 52.2 6.6 73 117-190 22-109 (157)
392 PRK04040 adenylate kinase; Pro 97.6 8.6E-05 1.9E-09 56.5 4.2 31 121-151 3-35 (188)
393 PRK08233 hypothetical protein; 97.6 9E-05 2E-09 55.5 4.3 31 122-152 5-36 (182)
394 cd03280 ABC_MutS2 MutS2 homolo 97.6 0.00036 7.8E-09 53.5 7.7 21 121-141 29-49 (200)
395 PF05970 PIF1: PIF1-like helic 97.6 0.00023 5.1E-09 59.6 7.1 27 118-144 20-46 (364)
396 TIGR01526 nadR_NMN_Atrans nico 97.6 0.00026 5.6E-09 58.5 7.2 39 120-158 162-200 (325)
397 TIGR01448 recD_rel helicase, p 97.6 0.0004 8.8E-09 63.2 9.0 73 120-192 338-429 (720)
398 cd02027 APSK Adenosine 5'-phos 97.6 0.00012 2.6E-09 53.6 4.6 35 123-157 2-39 (149)
399 cd03238 ABC_UvrA The excision 97.6 0.00035 7.7E-09 52.6 7.3 26 117-142 18-43 (176)
400 COG0467 RAD55 RecA-superfamily 97.6 0.00013 2.9E-09 58.1 5.1 40 116-155 19-61 (260)
401 PRK12726 flagellar biosynthesi 97.5 0.0007 1.5E-08 56.8 9.3 76 118-193 204-299 (407)
402 PF14516 AAA_35: AAA-like doma 97.5 0.00084 1.8E-08 55.6 9.9 39 118-156 29-70 (331)
403 PRK08099 bifunctional DNA-bind 97.5 0.00026 5.7E-09 60.0 7.0 31 120-150 219-249 (399)
404 COG5008 PilU Tfp pilus assembl 97.5 0.0004 8.8E-09 55.2 7.4 84 106-189 113-210 (375)
405 PRK05541 adenylylsulfate kinas 97.5 0.00015 3.2E-09 54.3 4.9 39 118-156 5-46 (176)
406 PF13521 AAA_28: AAA domain; P 97.5 9.1E-05 2E-09 54.8 3.7 34 123-157 2-35 (163)
407 PRK14526 adenylate kinase; Pro 97.5 0.00013 2.9E-09 56.5 4.6 28 122-149 2-29 (211)
408 PRK05973 replicative DNA helic 97.5 0.00016 3.5E-09 57.0 5.1 39 116-154 60-101 (237)
409 PRK04182 cytidylate kinase; Pr 97.5 0.0001 2.2E-09 55.1 3.9 29 122-150 2-30 (180)
410 cd03228 ABCC_MRP_Like The MRP 97.5 0.00019 4.2E-09 53.6 5.2 28 117-144 25-52 (171)
411 COG0529 CysC Adenylylsulfate k 97.5 0.00026 5.7E-09 52.9 5.7 42 118-159 21-65 (197)
412 KOG2680|consensus 97.5 0.00014 3.1E-09 58.7 4.6 89 78-175 32-122 (454)
413 TIGR02173 cyt_kin_arch cytidyl 97.5 0.00011 2.5E-09 54.4 3.9 29 123-151 3-31 (171)
414 PF00406 ADK: Adenylate kinase 97.5 8.5E-05 1.8E-09 54.3 3.1 32 125-158 1-32 (151)
415 PF05707 Zot: Zonular occluden 97.5 0.00012 2.7E-09 55.8 4.1 73 123-196 3-96 (193)
416 PRK09519 recA DNA recombinatio 97.5 0.0004 8.7E-09 63.1 7.8 77 117-193 57-152 (790)
417 PRK12608 transcription termina 97.5 0.00027 5.9E-09 59.0 6.1 27 118-144 131-157 (380)
418 PRK10078 ribose 1,5-bisphospho 97.5 0.00013 2.9E-09 55.2 4.0 29 121-149 3-31 (186)
419 PF06745 KaiC: KaiC; InterPro 97.5 0.00013 2.8E-09 57.0 3.9 38 116-153 15-56 (226)
420 COG1855 ATPase (PilT family) [ 97.5 0.00016 3.5E-09 61.3 4.6 25 120-144 263-287 (604)
421 PRK06964 DNA polymerase III su 97.5 0.00019 4.2E-09 59.5 5.1 29 118-146 19-47 (342)
422 PRK01184 hypothetical protein; 97.5 0.00014 3E-09 54.9 3.8 29 122-151 3-31 (184)
423 PRK14529 adenylate kinase; Pro 97.5 0.00017 3.6E-09 56.4 4.3 28 122-149 2-29 (223)
424 KOG2035|consensus 97.4 0.00054 1.2E-08 54.8 7.0 52 80-144 7-58 (351)
425 TIGR01425 SRP54_euk signal rec 97.4 0.0015 3.2E-08 55.8 10.1 74 120-193 100-196 (429)
426 TIGR02238 recomb_DMC1 meiotic 97.4 0.00071 1.5E-08 55.6 7.9 40 116-155 92-140 (313)
427 COG0630 VirB11 Type IV secreto 97.4 0.00014 3E-09 59.8 3.7 73 118-190 141-228 (312)
428 cd03247 ABCC_cytochrome_bd The 97.4 0.00059 1.3E-08 51.2 6.9 28 117-144 25-52 (178)
429 PRK10867 signal recognition pa 97.4 0.0019 4.1E-08 55.3 10.6 74 119-192 99-196 (433)
430 cd03223 ABCD_peroxisomal_ALDP 97.4 0.00041 8.9E-09 51.6 5.9 28 117-144 24-51 (166)
431 PRK05703 flhF flagellar biosyn 97.4 0.0018 4E-08 55.4 10.5 71 120-192 221-312 (424)
432 PRK05986 cob(I)alamin adenolsy 97.4 0.0007 1.5E-08 51.5 7.1 33 119-151 21-56 (191)
433 PRK00889 adenylylsulfate kinas 97.4 0.00029 6.2E-09 52.7 4.9 37 120-156 4-43 (175)
434 KOG1051|consensus 97.4 0.0012 2.7E-08 60.6 9.7 98 85-195 185-296 (898)
435 cd03246 ABCC_Protease_Secretio 97.4 0.00078 1.7E-08 50.4 7.1 28 117-144 25-52 (173)
436 PF03266 NTPase_1: NTPase; In 97.4 0.00016 3.6E-09 54.0 3.4 23 122-144 1-23 (168)
437 PLN02199 shikimate kinase 97.4 0.0005 1.1E-08 55.7 6.3 34 119-152 101-134 (303)
438 PRK14730 coaE dephospho-CoA ki 97.4 0.00041 9E-09 53.1 5.6 37 122-160 3-39 (195)
439 TIGR02655 circ_KaiC circadian 97.4 0.00083 1.8E-08 58.5 8.1 39 116-154 17-59 (484)
440 cd03227 ABC_Class2 ABC-type Cl 97.4 0.00068 1.5E-08 50.2 6.6 23 120-142 21-43 (162)
441 TIGR02322 phosphon_PhnN phosph 97.4 0.00017 3.7E-09 54.1 3.3 24 122-145 3-26 (179)
442 TIGR00708 cobA cob(I)alamin ad 97.4 0.00086 1.9E-08 50.2 6.9 30 121-150 6-38 (173)
443 COG0194 Gmk Guanylate kinase [ 97.3 0.00082 1.8E-08 50.7 6.6 25 120-144 4-28 (191)
444 PRK05480 uridine/cytidine kina 97.3 0.00032 7E-09 54.0 4.7 35 119-153 5-40 (209)
445 TIGR00959 ffh signal recogniti 97.3 0.0029 6.3E-08 54.1 10.8 74 119-192 98-195 (428)
446 PLN02459 probable adenylate ki 97.3 0.00029 6.2E-09 56.2 4.4 30 121-150 30-59 (261)
447 PRK12339 2-phosphoglycerate ki 97.3 0.00029 6.4E-09 54.0 4.3 29 120-148 3-31 (197)
448 PF12780 AAA_8: P-loop contain 97.3 0.0016 3.4E-08 52.4 8.6 92 87-191 9-101 (268)
449 PRK12338 hypothetical protein; 97.3 0.00029 6.2E-09 57.8 4.4 30 120-149 4-33 (319)
450 cd03214 ABC_Iron-Siderophores_ 97.3 0.00076 1.6E-08 50.8 6.4 28 117-144 22-49 (180)
451 PF02367 UPF0079: Uncharacteri 97.3 0.00028 6E-09 49.9 3.7 30 118-147 13-42 (123)
452 PRK00091 miaA tRNA delta(2)-is 97.3 0.00027 5.8E-09 57.9 4.1 33 121-153 5-37 (307)
453 cd02028 UMPK_like Uridine mono 97.3 0.00037 8E-09 52.6 4.6 35 123-157 2-39 (179)
454 cd03287 ABC_MSH3_euk MutS3 hom 97.3 0.0012 2.5E-08 51.6 7.5 24 119-142 30-53 (222)
455 TIGR03880 KaiC_arch_3 KaiC dom 97.3 0.00046 9.9E-09 53.8 5.2 39 116-154 12-53 (224)
456 PLN02165 adenylate isopentenyl 97.3 0.00025 5.3E-09 58.4 3.7 34 119-152 42-75 (334)
457 PRK05917 DNA polymerase III su 97.3 0.00092 2E-08 54.2 6.9 77 118-194 17-110 (290)
458 PTZ00293 thymidine kinase; Pro 97.3 0.00056 1.2E-08 52.8 5.4 67 123-192 7-90 (211)
459 PF00485 PRK: Phosphoribulokin 97.3 0.00021 4.6E-09 54.5 3.1 23 123-145 2-24 (194)
460 cd02024 NRK1 Nicotinamide ribo 97.3 0.0003 6.5E-09 53.5 3.9 30 123-152 2-32 (187)
461 KOG2543|consensus 97.3 0.0014 3E-08 54.6 7.9 60 87-156 7-66 (438)
462 PTZ00202 tuzin; Provisional 97.3 0.0011 2.3E-08 56.7 7.4 61 84-154 260-320 (550)
463 cd03282 ABC_MSH4_euk MutS4 hom 97.3 0.0011 2.5E-08 51.0 7.1 23 120-142 29-51 (204)
464 TIGR00376 DNA helicase, putati 97.3 0.0028 6.1E-08 57.0 10.4 32 121-152 174-208 (637)
465 COG5271 MDN1 AAA ATPase contai 97.3 0.0014 3.1E-08 63.6 8.6 37 119-155 1542-1578(4600)
466 COG1127 Ttg2A ABC-type transpo 97.3 0.00091 2E-08 52.4 6.3 28 117-144 31-58 (263)
467 cd00071 GMPK Guanosine monopho 97.3 0.0003 6.6E-09 50.7 3.5 22 123-144 2-23 (137)
468 PLN03187 meiotic recombination 97.3 0.00093 2E-08 55.5 6.8 39 117-155 123-170 (344)
469 PF00154 RecA: recA bacterial 97.3 0.00077 1.7E-08 55.4 6.2 78 118-195 51-147 (322)
470 cd00984 DnaB_C DnaB helicase C 97.3 0.00049 1.1E-08 54.1 4.9 38 116-153 9-50 (242)
471 TIGR02236 recomb_radA DNA repa 97.2 0.00049 1.1E-08 56.4 5.1 39 117-155 92-139 (310)
472 COG4088 Predicted nucleotide k 97.2 0.00045 9.7E-09 53.0 4.3 23 122-144 3-25 (261)
473 PRK09825 idnK D-gluconate kina 97.2 0.00045 9.7E-09 52.0 4.4 27 121-147 4-30 (176)
474 cd03285 ABC_MSH2_euk MutS2 hom 97.2 0.0017 3.7E-08 50.7 7.8 24 119-142 29-52 (222)
475 cd02022 DPCK Dephospho-coenzym 97.2 0.00058 1.3E-08 51.4 4.9 33 123-158 2-34 (179)
476 PRK00300 gmk guanylate kinase; 97.2 0.0004 8.6E-09 53.2 4.1 27 119-145 4-30 (205)
477 TIGR00174 miaA tRNA isopenteny 97.2 0.00037 8E-09 56.4 4.0 31 123-153 2-32 (287)
478 smart00487 DEXDc DEAD-like hel 97.2 0.001 2.2E-08 49.5 6.2 33 121-153 25-62 (201)
479 cd02023 UMPK Uridine monophosp 97.2 0.0005 1.1E-08 52.5 4.5 22 123-144 2-23 (198)
480 PRK09302 circadian clock prote 97.2 0.001 2.2E-08 58.2 6.8 39 116-154 269-310 (509)
481 PF13555 AAA_29: P-loop contai 97.2 0.00046 9.9E-09 42.7 3.3 23 122-144 25-47 (62)
482 PRK14737 gmk guanylate kinase; 97.2 0.00033 7.2E-09 53.2 3.3 26 119-144 3-28 (186)
483 PRK10646 ADP-binding protein; 97.2 0.0012 2.6E-08 48.5 6.0 29 118-146 26-54 (153)
484 PRK10463 hydrogenase nickel in 97.2 0.0055 1.2E-07 49.6 10.3 74 118-191 102-196 (290)
485 PF04665 Pox_A32: Poxvirus A32 97.2 0.002 4.4E-08 50.8 7.7 28 118-145 11-38 (241)
486 COG0552 FtsY Signal recognitio 97.2 0.0066 1.4E-07 49.8 10.8 76 119-194 138-236 (340)
487 PRK13889 conjugal transfer rel 97.2 0.0032 6.9E-08 59.0 10.0 72 122-193 364-447 (988)
488 TIGR03263 guanyl_kin guanylate 97.2 0.00032 6.9E-09 52.6 2.9 23 122-144 3-25 (180)
489 COG3842 PotA ABC-type spermidi 97.2 0.00028 6.2E-09 58.5 2.8 26 118-143 29-54 (352)
490 TIGR00750 lao LAO/AO transport 97.2 0.0025 5.4E-08 52.0 8.3 35 118-152 32-69 (300)
491 PRK13808 adenylate kinase; Pro 97.2 0.00043 9.4E-09 57.1 3.8 30 122-151 2-31 (333)
492 PF13481 AAA_25: AAA domain; P 97.2 0.0013 2.8E-08 49.7 6.3 76 119-194 31-156 (193)
493 PF02456 Adeno_IVa2: Adenoviru 97.2 0.0011 2.5E-08 53.6 6.0 19 123-141 90-108 (369)
494 PRK04301 radA DNA repair and r 97.1 0.00069 1.5E-08 55.7 4.9 40 116-155 98-146 (317)
495 cd01878 HflX HflX subfamily. 97.1 0.0045 9.7E-08 47.2 9.2 24 120-143 41-64 (204)
496 cd00820 PEPCK_HprK Phosphoenol 97.1 0.00031 6.7E-09 48.4 2.4 24 118-141 13-36 (107)
497 TIGR00235 udk uridine kinase. 97.1 0.00041 8.8E-09 53.5 3.3 25 121-145 7-31 (207)
498 PRK06761 hypothetical protein; 97.1 0.00053 1.1E-08 55.4 4.1 29 121-149 4-32 (282)
499 KOG0058|consensus 97.1 0.0014 3E-08 58.5 6.9 27 117-143 491-517 (716)
500 PRK07667 uridine kinase; Provi 97.1 0.0007 1.5E-08 51.7 4.6 35 121-155 18-55 (193)
No 1
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=5.8e-31 Score=211.35 Aligned_cols=124 Identities=52% Similarity=0.899 Sum_probs=118.4
Q ss_pred chhHHhhcCCCCcccccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHhCCeEEEEe
Q psy6208 73 REEEEEASNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLIN 152 (197)
Q Consensus 73 ~~~~~~~~~~~~~~~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~~~~~~~v~ 152 (197)
..+..+..|.++|+||||++++++++++.++.|+.+|+.|+.+|+.+|+|+|||||||||||.||+|+|++.++.|+.+.
T Consensus 138 ~~M~v~e~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvv 217 (406)
T COG1222 138 SVMEVEEKPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVV 217 (406)
T ss_pred heeeeccCCCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEec
Confidence 34455667899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhhccCccHHHHHHHHHHHhcCCCeEEEEcccCccCcccC
Q psy6208 153 GPEIMSKLAGESESNLRKAFEEADKNSPSIIFIDELDAIAPKRE 196 (197)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~vl~lDeid~l~~~r~ 196 (197)
++++..+|+|+....++++|+.|+..+||||||||||++..+|-
T Consensus 218 gSElVqKYiGEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~ 261 (406)
T COG1222 218 GSELVQKYIGEGARLVRELFELAREKAPSIIFIDEIDAIGAKRF 261 (406)
T ss_pred cHHHHHHHhccchHHHHHHHHHHhhcCCeEEEEechhhhhcccc
Confidence 99999999999999999999999999999999999999999883
No 2
>KOG0733|consensus
Probab=99.96 E-value=2.8e-29 Score=212.57 Aligned_cols=119 Identities=45% Similarity=0.857 Sum_probs=115.7
Q ss_pred hcCCCCcccccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhh
Q psy6208 79 ASNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMS 158 (197)
Q Consensus 79 ~~~~~~~~~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~~~~~~~v~~~~~~~ 158 (197)
.-|.++|+|||+++++..++..++.+|.++|+.|+++|+..+.|||||||||||||.||+|+|++.+..|+.|.++++++
T Consensus 504 tVPdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEag~NFisVKGPELlN 583 (802)
T KOG0733|consen 504 TVPDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEAGANFISVKGPELLN 583 (802)
T ss_pred ecCCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhccCceEeecCHHHHH
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCccHHHHHHHHHHHhcCCCeEEEEcccCccCcccCC
Q psy6208 159 KLAGESESNLRKAFEEADKNSPSIIFIDELDAIAPKREK 197 (197)
Q Consensus 159 ~~~~~~~~~~~~~~~~a~~~~~~vl~lDeid~l~~~r~~ 197 (197)
+|+|+++..++.+|.+|+...|||||+||+|.|.++|+.
T Consensus 584 kYVGESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~ 622 (802)
T KOG0733|consen 584 KYVGESERAVRQVFQRARASAPCVIFFDEIDALVPRRSD 622 (802)
T ss_pred HHhhhHHHHHHHHHHHhhcCCCeEEEecchhhcCcccCC
Confidence 999999999999999999999999999999999999863
No 3
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.95 E-value=1.1e-27 Score=185.60 Aligned_cols=178 Identities=31% Similarity=0.560 Sum_probs=151.3
Q ss_pred hhhHHHHhHHHhhhcCcccccCCEEEEecCcceEEEEEEEecCCCeEEEcCceEEEEcCCCCcchhHHhhcCCCCccccc
Q psy6208 10 SNLFEVYLKPYFLEAYRPVHKDDLFIVRGGMRAVEFKIVDTDPAPYCIVAADTVIHCEGDPIKREEEEEASNAVGYDDIG 89 (197)
Q Consensus 10 ~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 89 (197)
..+||.|.+++|... .+..|+..-....-+...|+|+.+.|.+..++...+.+.... +. ....+..+.++++|++
T Consensus 50 ~~~F~~YArdQW~Ge--~v~eg~ylFD~~~~pdyAfkvI~~~P~~~~i~~st~i~vl~~-~~--~~~~e~~~~it~ddVi 124 (368)
T COG1223 50 PEVFNIYARDQWLGE--VVREGDYLFDTRMFPDYAFKVIRVVPSGGGIITSTTIFVLET-PR--EEDREIISDITLDDVI 124 (368)
T ss_pred HHHHHHHHHHhhcce--eeecCceEeecccccccceeEEEEeCCCCceecceEEEEecC-cc--hhhhhhhccccHhhhh
Confidence 468999999999864 788899988888888889999999998888776666655542 22 2223445689999999
Q ss_pred CcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhhhccCccHHHHH
Q psy6208 90 GCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLR 169 (197)
Q Consensus 90 g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 169 (197)
|++.+++..+-.+ .++..|+.|..+ .|+++|+|||||||||++|+|+|++.+.+++.+++.++.++++|.....++
T Consensus 125 GqEeAK~kcrli~-~yLenPe~Fg~W---APknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGehVGdgar~Ih 200 (368)
T COG1223 125 GQEEAKRKCRLIM-EYLENPERFGDW---APKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGEHVGDGARRIH 200 (368)
T ss_pred chHHHHHHHHHHH-HHhhChHHhccc---CcceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHHHHhhhHHHHHH
Confidence 9999999875544 457888887764 488999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCeEEEEcccCccCcccC
Q psy6208 170 KAFEEADKNSPSIIFIDELDAIAPKRE 196 (197)
Q Consensus 170 ~~~~~a~~~~~~vl~lDeid~l~~~r~ 196 (197)
+++++|+..+|||+||||+|.++-+|.
T Consensus 201 ely~rA~~~aPcivFiDE~DAiaLdRr 227 (368)
T COG1223 201 ELYERARKAAPCIVFIDELDAIALDRR 227 (368)
T ss_pred HHHHHHHhcCCeEEEehhhhhhhhhhh
Confidence 999999999999999999999987763
No 4
>KOG0730|consensus
Probab=99.95 E-value=2.3e-28 Score=208.82 Aligned_cols=117 Identities=49% Similarity=0.911 Sum_probs=114.5
Q ss_pred cCCCCcccccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhhh
Q psy6208 80 SNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSK 159 (197)
Q Consensus 80 ~~~~~~~~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~~~~~~~v~~~~~~~~ 159 (197)
.+.++|+||||+++.+++|++.+.+|+.+++.|.++|+.++++||+|||||||||++|+++|++.+.+|+.+.+++++++
T Consensus 428 ~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~sk 507 (693)
T KOG0730|consen 428 MPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELFSK 507 (693)
T ss_pred CCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHHHH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCccHHHHHHHHHHHhcCCCeEEEEcccCccCcccC
Q psy6208 160 LAGESESNLRKAFEEADKNSPSIIFIDELDAIAPKRE 196 (197)
Q Consensus 160 ~~~~~~~~~~~~~~~a~~~~~~vl~lDeid~l~~~r~ 196 (197)
|+|+++..++.+|+.|+..+|||||+||||.++.+|+
T Consensus 508 ~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~ 544 (693)
T KOG0730|consen 508 YVGESERAIREVFRKARQVAPCIIFFDEIDALAGSRG 544 (693)
T ss_pred hcCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccC
Confidence 9999999999999999999999999999999999984
No 5
>KOG0736|consensus
Probab=99.95 E-value=6.2e-28 Score=208.67 Aligned_cols=119 Identities=46% Similarity=0.875 Sum_probs=113.3
Q ss_pred HhhcCCCCcccccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHhCCeEEEEechhh
Q psy6208 77 EEASNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEI 156 (197)
Q Consensus 77 ~~~~~~~~~~~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~~~~~~~v~~~~~ 156 (197)
.+..|.++|+||||+++++.+|.+.+..|+.++++|.. |..+..|||||||||||||.+|+|+|.++...|+.|.++++
T Consensus 663 APKIPnV~WdDVGGLeevK~eIldTIqlPL~hpeLfss-glrkRSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPEL 741 (953)
T KOG0736|consen 663 APKIPNVSWDDVGGLEEVKTEILDTIQLPLKHPELFSS-GLRKRSGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPEL 741 (953)
T ss_pred CCCCCccchhcccCHHHHHHHHHHHhcCcccChhhhhc-cccccceeEEECCCCCchHHHHHHHHhhceeeEEeecCHHH
Confidence 44578999999999999999999999999999999875 56778899999999999999999999999999999999999
Q ss_pred hhhccCccHHHHHHHHHHHhcCCCeEEEEcccCccCcccC
Q psy6208 157 MSKLAGESESNLRKAFEEADKNSPSIIFIDELDAIAPKRE 196 (197)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~a~~~~~~vl~lDeid~l~~~r~ 196 (197)
.+.|+|++|.+++++|++|+..+|||||+||+|+|+|+|+
T Consensus 742 LNMYVGqSE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG 781 (953)
T KOG0736|consen 742 LNMYVGQSEENVREVFERARSAAPCVIFFDELDSLAPNRG 781 (953)
T ss_pred HHHHhcchHHHHHHHHHHhhccCCeEEEeccccccCccCC
Confidence 9999999999999999999999999999999999999996
No 6
>KOG0733|consensus
Probab=99.94 E-value=1.1e-26 Score=197.06 Aligned_cols=114 Identities=52% Similarity=0.956 Sum_probs=111.4
Q ss_pred CCCcccccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhhhcc
Q psy6208 82 AVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLA 161 (197)
Q Consensus 82 ~~~~~~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~~~~~~~v~~~~~~~~~~ 161 (197)
.++|.||||.+..+.++.+.+.. +.+|+.|..+|+.+++|+|||||||||||+||+|+|.+++.+|+.++++++.+.+.
T Consensus 186 nv~f~diGG~d~~~~el~~li~~-i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSGvS 264 (802)
T KOG0733|consen 186 NVSFSDIGGLDKTLAELCELIIH-IKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSGVS 264 (802)
T ss_pred CcchhhccChHHHHHHHHHHHHH-hcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhcccC
Confidence 67899999999999999999988 99999999999999999999999999999999999999999999999999999999
Q ss_pred CccHHHHHHHHHHHhcCCCeEEEEcccCccCcccC
Q psy6208 162 GESESNLRKAFEEADKNSPSIIFIDELDAIAPKRE 196 (197)
Q Consensus 162 ~~~~~~~~~~~~~a~~~~~~vl~lDeid~l~~~r~ 196 (197)
|++++.++++|+.|....|||+||||||.+.|+|+
T Consensus 265 GESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe 299 (802)
T KOG0733|consen 265 GESEKKIRELFDQAKSNAPCIVFIDEIDAITPKRE 299 (802)
T ss_pred cccHHHHHHHHHHHhccCCeEEEeecccccccchh
Confidence 99999999999999999999999999999999996
No 7
>KOG0727|consensus
Probab=99.93 E-value=3.3e-25 Score=171.44 Aligned_cols=120 Identities=54% Similarity=0.895 Sum_probs=115.1
Q ss_pred HHhhcCCCCcccccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHhCCeEEEEechh
Q psy6208 76 EEEASNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPE 155 (197)
Q Consensus 76 ~~~~~~~~~~~~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~~~~~~~v~~~~ 155 (197)
.+...|.+++.|+||++-+++++++.++.|+.+.++|+.+|+.+++|+|+|||||||||+|++|+|+.....|+.+.+++
T Consensus 145 ~~~ekpdvsy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgse 224 (408)
T KOG0727|consen 145 GPDEKPDVSYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSE 224 (408)
T ss_pred CCCCCCCccccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHH
Confidence 34456789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccCccHHHHHHHHHHHhcCCCeEEEEcccCccCccc
Q psy6208 156 IMSKLAGESESNLRKAFEEADKNSPSIIFIDELDAIAPKR 195 (197)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~a~~~~~~vl~lDeid~l~~~r 195 (197)
+..+|.|+....++.+|+.|+.+.|+||||||+|.++.+|
T Consensus 225 fvqkylgegprmvrdvfrlakenapsiifideidaiatkr 264 (408)
T KOG0727|consen 225 FVQKYLGEGPRMVRDVFRLAKENAPSIIFIDEIDAIATKR 264 (408)
T ss_pred HHHHHhccCcHHHHHHHHHHhccCCcEEEeehhhhHhhhh
Confidence 9999999999999999999999999999999999999887
No 8
>KOG0739|consensus
Probab=99.93 E-value=1.2e-25 Score=177.19 Aligned_cols=116 Identities=46% Similarity=0.779 Sum_probs=110.4
Q ss_pred cCCCCcccccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhhh
Q psy6208 80 SNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSK 159 (197)
Q Consensus 80 ~~~~~~~~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~~~~~~~v~~~~~~~~ 159 (197)
.|.+.|+|+.|++.+++.|++++..|.+.|.+|..-. .+-++|||||||||||+.||+|+|.+.+..|+.++.++++++
T Consensus 127 KPNVkWsDVAGLE~AKeALKEAVILPIKFPqlFtGkR-~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDLvSK 205 (439)
T KOG0739|consen 127 KPNVKWSDVAGLEGAKEALKEAVILPIKFPQLFTGKR-KPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSK 205 (439)
T ss_pred CCCCchhhhccchhHHHHHHhheeecccchhhhcCCC-CcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHHHHH
Confidence 5789999999999999999999999999999998643 567899999999999999999999999999999999999999
Q ss_pred ccCccHHHHHHHHHHHhcCCCeEEEEcccCccCcccC
Q psy6208 160 LAGESESNLRKAFEEADKNSPSIIFIDELDAIAPKRE 196 (197)
Q Consensus 160 ~~~~~~~~~~~~~~~a~~~~~~vl~lDeid~l~~~r~ 196 (197)
|.|++++.++.+|+.|+.+.|+||||||||.|+++|+
T Consensus 206 WmGESEkLVknLFemARe~kPSIIFiDEiDslcg~r~ 242 (439)
T KOG0739|consen 206 WMGESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRS 242 (439)
T ss_pred HhccHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCC
Confidence 9999999999999999999999999999999999986
No 9
>KOG0738|consensus
Probab=99.92 E-value=1.9e-25 Score=181.12 Aligned_cols=117 Identities=44% Similarity=0.735 Sum_probs=112.3
Q ss_pred hcCCCCcccccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhh
Q psy6208 79 ASNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMS 158 (197)
Q Consensus 79 ~~~~~~~~~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~~~~~~~v~~~~~~~ 158 (197)
.++.+.|+||.|+.++++-|++++..|+..|++|+.+. .+-+++|++||||||||+||+|+|.+.+..|+.|+.+.+.+
T Consensus 205 ~np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~Gir-rPWkgvLm~GPPGTGKTlLAKAvATEc~tTFFNVSsstltS 283 (491)
T KOG0738|consen 205 RNPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGIR-RPWKGVLMVGPPGTGKTLLAKAVATECGTTFFNVSSSTLTS 283 (491)
T ss_pred cCCCcChHhhcchHHHHHHHHHHHhhhhhhHHHHhhcc-cccceeeeeCCCCCcHHHHHHHHHHhhcCeEEEechhhhhh
Confidence 46789999999999999999999999999999999875 67889999999999999999999999999999999999999
Q ss_pred hccCccHHHHHHHHHHHhcCCCeEEEEcccCccCcccC
Q psy6208 159 KLAGESESNLRKAFEEADKNSPSIIFIDELDAIAPKRE 196 (197)
Q Consensus 159 ~~~~~~~~~~~~~~~~a~~~~~~vl~lDeid~l~~~r~ 196 (197)
+|.|++++.++-+|+.|+.++|++|||||||.|+.+|+
T Consensus 284 KwRGeSEKlvRlLFemARfyAPStIFiDEIDslcs~RG 321 (491)
T KOG0738|consen 284 KWRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSQRG 321 (491)
T ss_pred hhccchHHHHHHHHHHHHHhCCceeehhhHHHHHhcCC
Confidence 99999999999999999999999999999999999985
No 10
>KOG0652|consensus
Probab=99.92 E-value=2e-24 Score=167.79 Aligned_cols=166 Identities=39% Similarity=0.678 Sum_probs=139.1
Q ss_pred cCCEEEEecCcceEEEEEEE-e------cCCCeEEEcCceEEEEcCCCCc-----chhHHhhcCCCCcccccCcHHHHHH
Q psy6208 30 KDDLFIVRGGMRAVEFKIVD-T------DPAPYCIVAADTVIHCEGDPIK-----REEEEEASNAVGYDDIGGCRKQLAQ 97 (197)
Q Consensus 30 ~~~~~~~~~~~~~~~~~v~~-~------~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~i~g~~~~~~~ 97 (197)
.|....+..+.+..+|-.+- + .|...+.+...+.+.+..-|.. ........|.-.++||||++.++++
T Consensus 103 kgkcaViktStRqt~fLPvvGLvd~~~LkPgDLVgvnKDsyliletLP~eyDsrVkaMevDekPtE~YsDiGGldkQIqE 182 (424)
T KOG0652|consen 103 KGKCAVIKTSTRQTYFLPVVGLVDPDKLKPGDLVGVNKDSYLILETLPSEYDSRVKAMEVDEKPTEQYSDIGGLDKQIQE 182 (424)
T ss_pred cceeEEEecccceeeeeeeecccChhhCCCcceeeecCCceeehhcCChhhhhhcceeeeccCCcccccccccHHHHHHH
Confidence 46666777777777765432 2 4666666666666555443321 1122234567789999999999999
Q ss_pred HHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhhhccCccHHHHHHHHHHHhc
Q psy6208 98 IKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADK 177 (197)
Q Consensus 98 l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~a~~ 177 (197)
+.+++..++.+++.|..+|+.+|.|+|+|||||||||.+|+|.|...+..|+.+.++.+...++|...+.++..|..|..
T Consensus 183 LvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLAgPQLVQMfIGdGAkLVRDAFaLAKE 262 (424)
T KOG0652|consen 183 LVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFALAKE 262 (424)
T ss_pred HHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchHHHhcchHHHhhhhcchHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEEcccCccCccc
Q psy6208 178 NSPSIIFIDELDAIAPKR 195 (197)
Q Consensus 178 ~~~~vl~lDeid~l~~~r 195 (197)
..|+||||||+|.+..+|
T Consensus 263 kaP~IIFIDElDAIGtKR 280 (424)
T KOG0652|consen 263 KAPTIIFIDELDAIGTKR 280 (424)
T ss_pred cCCeEEEEechhhhcccc
Confidence 999999999999999887
No 11
>KOG0728|consensus
Probab=99.91 E-value=1.7e-24 Score=167.30 Aligned_cols=120 Identities=48% Similarity=0.866 Sum_probs=114.4
Q ss_pred HhhcCCCCcccccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHhCCeEEEEechhh
Q psy6208 77 EEASNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEI 156 (197)
Q Consensus 77 ~~~~~~~~~~~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~~~~~~~v~~~~~ 156 (197)
.+.-|.-+++-+||++.+++++++.++.|.++|++|+.+|+..|.|+|||||||+|||.||+++|+...+.|+.++++++
T Consensus 138 VeKvPDStYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~c~firvsgsel 217 (404)
T KOG0728|consen 138 VEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSEL 217 (404)
T ss_pred hhhCCccHHHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcceEEEEechHHH
Confidence 44566778888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccCccHHHHHHHHHHHhcCCCeEEEEcccCccCcccC
Q psy6208 157 MSKLAGESESNLRKAFEEADKNSPSIIFIDELDAIAPKRE 196 (197)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~a~~~~~~vl~lDeid~l~~~r~ 196 (197)
..+|+|+....++++|-.|+..+|+|||+||||++...|-
T Consensus 218 vqk~igegsrmvrelfvmarehapsiifmdeidsigs~r~ 257 (404)
T KOG0728|consen 218 VQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRV 257 (404)
T ss_pred HHHHhhhhHHHHHHHHHHHHhcCCceEeeecccccccccc
Confidence 9999999999999999999999999999999999998873
No 12
>KOG0726|consensus
Probab=99.91 E-value=7.1e-25 Score=172.42 Aligned_cols=127 Identities=48% Similarity=0.862 Sum_probs=118.2
Q ss_pred CCCcchhHHhhcCCCCcccccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHhCCeE
Q psy6208 69 DPIKREEEEEASNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFF 148 (197)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~~~~~ 148 (197)
+|......-+..|.-++.||||+++++++|++.++.|+.+|++|+.+|+.++.++++||+||||||.||+|+|+.....|
T Consensus 168 dpmv~vmK~eKaP~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATF 247 (440)
T KOG0726|consen 168 DPMVSVMKVEKAPQETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATF 247 (440)
T ss_pred CccceeeecccCchhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhh
Confidence 34434444556678899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEechhhhhhccCccHHHHHHHHHHHhcCCCeEEEEcccCccCccc
Q psy6208 149 FLINGPEIMSKLAGESESNLRKAFEEADKNSPSIIFIDELDAIAPKR 195 (197)
Q Consensus 149 ~~v~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~vl~lDeid~l~~~r 195 (197)
+.+..+++..+|.|...+.++++|+.|...+|+|+||||||.+..+|
T Consensus 248 lRvvGseLiQkylGdGpklvRqlF~vA~e~apSIvFiDEIdAiGtKR 294 (440)
T KOG0726|consen 248 LRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKR 294 (440)
T ss_pred hhhhhHHHHHHHhccchHHHHHHHHHHHhcCCceEEeehhhhhcccc
Confidence 99999999999999999999999999999999999999999999887
No 13
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.91 E-value=1.9e-23 Score=187.87 Aligned_cols=182 Identities=53% Similarity=0.909 Sum_probs=157.5
Q ss_pred hHHHHhHHHhhhcCcccccCCEEEEecCcceEEEEEEEecCCCeEEEcCceEEEEcCCCCcchhHHhhcCCCCcccccCc
Q psy6208 12 LFEVYLKPYFLEAYRPVHKDDLFIVRGGMRAVEFKIVDTDPAPYCIVAADTVIHCEGDPIKREEEEEASNAVGYDDIGGC 91 (197)
Q Consensus 12 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~ 91 (197)
.+..++..++.+ .++..|+.+.+........|.|+...|.+.+.+...+.+.+...+..... ....+.++|+||+|+
T Consensus 107 ~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~v~~~~p~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~~~~di~G~ 183 (733)
T TIGR01243 107 DFVDYVKEFLLG--KPISKGETVIVPVLEGALPFVVVSTQPAGFVYVTEATEVEIREKPVREEI-ERKVPKVTYEDIGGL 183 (733)
T ss_pred chHHHHHHHHcC--CCCCCCCEEEecccCcceeEEEEecCCCCcEEECCCceEEecCCcccccc-ccCCCCCCHHHhcCH
Confidence 345677777775 58889999888766677889999988888888888887777654433221 123467999999999
Q ss_pred HHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhhhccCccHHHHHHH
Q psy6208 92 RKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKA 171 (197)
Q Consensus 92 ~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 171 (197)
+.+++++.+++..++.+++.++.+++.++.++||+||||||||++++++|++++.+++.++++++.+.+.+..+..++.+
T Consensus 184 ~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~i~i~~~~i~~~~~g~~~~~l~~l 263 (733)
T TIGR01243 184 KEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEIMSKYYGESEERLREI 263 (733)
T ss_pred HHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEecHHHhcccccHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCeEEEEcccCccCcccC
Q psy6208 172 FEEADKNSPSIIFIDELDAIAPKRE 196 (197)
Q Consensus 172 ~~~a~~~~~~vl~lDeid~l~~~r~ 196 (197)
|+.+....|++|||||+|.++++|+
T Consensus 264 f~~a~~~~p~il~iDEid~l~~~r~ 288 (733)
T TIGR01243 264 FKEAEENAPSIIFIDEIDAIAPKRE 288 (733)
T ss_pred HHHHHhcCCcEEEeehhhhhccccc
Confidence 9999998999999999999998764
No 14
>KOG0729|consensus
Probab=99.91 E-value=2.2e-24 Score=168.01 Aligned_cols=119 Identities=50% Similarity=0.899 Sum_probs=114.6
Q ss_pred HhhcCCCCcccccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHhCCeEEEEechhh
Q psy6208 77 EEASNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEI 156 (197)
Q Consensus 77 ~~~~~~~~~~~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~~~~~~~v~~~~~ 156 (197)
.+..+.+++.|++|..++++.+++.++.|+.+|+.|-.+|+.++.++|+|||||||||.+|+|+|+..+..|+.+-.+++
T Consensus 168 veekpdvty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtdacfirvigsel 247 (435)
T KOG0729|consen 168 VEEKPDVTYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSEL 247 (435)
T ss_pred eecCCCcccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCceEEeehhHHH
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccCccHHHHHHHHHHHhcCCCeEEEEcccCccCccc
Q psy6208 157 MSKLAGESESNLRKAFEEADKNSPSIIFIDELDAIAPKR 195 (197)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~a~~~~~~vl~lDeid~l~~~r 195 (197)
..+|+|+....++++|+.|+..+.|+||+||||.+.+.|
T Consensus 248 vqkyvgegarmvrelf~martkkaciiffdeidaiggar 286 (435)
T KOG0729|consen 248 VQKYVGEGARMVRELFEMARTKKACIIFFDEIDAIGGAR 286 (435)
T ss_pred HHHHhhhhHHHHHHHHHHhcccceEEEEeeccccccCcc
Confidence 999999999999999999999999999999999999877
No 15
>KOG0735|consensus
Probab=99.91 E-value=3.7e-24 Score=184.18 Aligned_cols=115 Identities=43% Similarity=0.802 Sum_probs=112.6
Q ss_pred CCCcccccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhhhcc
Q psy6208 82 AVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLA 161 (197)
Q Consensus 82 ~~~~~~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~~~~~~~v~~~~~~~~~~ 161 (197)
.+.|+||+|+.++++.+.+.+.+|.++|..|...+++.+.|||||||||||||+||.++|...+..|+.+.++++.++|+
T Consensus 663 gi~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL~KyI 742 (952)
T KOG0735|consen 663 GIRWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPELLSKYI 742 (952)
T ss_pred CCCceecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHHHHHh
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccHHHHHHHHHHHhcCCCeEEEEcccCccCcccC
Q psy6208 162 GESESNLRKAFEEADKNSPSIIFIDELDAIAPKRE 196 (197)
Q Consensus 162 ~~~~~~~~~~~~~a~~~~~~vl~lDeid~l~~~r~ 196 (197)
|.++.+++.+|.+|+..+|||||+||+|+++|+|+
T Consensus 743 GaSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRG 777 (952)
T KOG0735|consen 743 GASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRG 777 (952)
T ss_pred cccHHHHHHHHHHhhccCCeEEEeccccccCcccC
Confidence 99999999999999999999999999999999996
No 16
>KOG0734|consensus
Probab=99.91 E-value=6.6e-24 Score=177.96 Aligned_cols=120 Identities=43% Similarity=0.766 Sum_probs=113.1
Q ss_pred HHhhcCCCCcccccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHhCCeEEEEechh
Q psy6208 76 EEEASNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPE 155 (197)
Q Consensus 76 ~~~~~~~~~~~~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~~~~~~~v~~~~ 155 (197)
.++...+++|+|+.|.++++.++.+.+.. ++.|..|.++|-+-|+||||.||||||||.||+|+|.+.+.||++..+++
T Consensus 294 ~p~~~~nv~F~dVkG~DEAK~ELeEiVef-LkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSE 372 (752)
T KOG0734|consen 294 DPEQMKNVTFEDVKGVDEAKQELEEIVEF-LKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSE 372 (752)
T ss_pred ChhhhcccccccccChHHHHHHHHHHHHH-hcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccc
Confidence 34455688999999999999999998876 89999999999999999999999999999999999999999999999999
Q ss_pred hhhhccCccHHHHHHHHHHHhcCCCeEEEEcccCccCcccC
Q psy6208 156 IMSKLAGESESNLRKAFEEADKNSPSIIFIDELDAIAPKRE 196 (197)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~a~~~~~~vl~lDeid~l~~~r~ 196 (197)
+-..++|...+.++.+|..|+..+||||||||||.+..+|.
T Consensus 373 FdEm~VGvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~ 413 (752)
T KOG0734|consen 373 FDEMFVGVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRN 413 (752)
T ss_pred hhhhhhcccHHHHHHHHHHHHhcCCeEEEEechhhhcccCC
Confidence 99999999999999999999999999999999999999984
No 17
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=99.89 E-value=4.4e-23 Score=172.91 Aligned_cols=117 Identities=53% Similarity=0.888 Sum_probs=111.7
Q ss_pred hcCCCCcccccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhh
Q psy6208 79 ASNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMS 158 (197)
Q Consensus 79 ~~~~~~~~~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~~~~~~~v~~~~~~~ 158 (197)
..+.++|+||+|++.+++++++.+..++.+++.|..+|+.++.++||+||||||||++|+++|++++.+++.+.++++..
T Consensus 138 ~~p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l~~ 217 (398)
T PTZ00454 138 EKPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEFVQ 217 (398)
T ss_pred CCCCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCccHHHHHHHHHHHhcCCCeEEEEcccCccCccc
Q psy6208 159 KLAGESESNLRKAFEEADKNSPSIIFIDELDAIAPKR 195 (197)
Q Consensus 159 ~~~~~~~~~~~~~~~~a~~~~~~vl~lDeid~l~~~r 195 (197)
.+.++.+..++.+|..+....|+||||||+|.++++|
T Consensus 218 k~~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r 254 (398)
T PTZ00454 218 KYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKR 254 (398)
T ss_pred HhcchhHHHHHHHHHHHHhcCCeEEEEECHhhhcccc
Confidence 9999999999999999999999999999999998765
No 18
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.89 E-value=9.5e-23 Score=171.14 Aligned_cols=117 Identities=55% Similarity=0.969 Sum_probs=111.2
Q ss_pred hcCCCCcccccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhh
Q psy6208 79 ASNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMS 158 (197)
Q Consensus 79 ~~~~~~~~~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~~~~~~~v~~~~~~~ 158 (197)
..+.++|+||+|++++++++.+.+..++.+++.|+.+|+.++.++||+||||||||++|+++|++++.+++.++++++..
T Consensus 124 ~~p~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l~~ 203 (389)
T PRK03992 124 ESPNVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVQ 203 (389)
T ss_pred CCCCCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHHhH
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCccHHHHHHHHHHHhcCCCeEEEEcccCccCccc
Q psy6208 159 KLAGESESNLRKAFEEADKNSPSIIFIDELDAIAPKR 195 (197)
Q Consensus 159 ~~~~~~~~~~~~~~~~a~~~~~~vl~lDeid~l~~~r 195 (197)
.+.++.+..++.+|+.+....|+||||||+|.++++|
T Consensus 204 ~~~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r 240 (389)
T PRK03992 204 KFIGEGARLVRELFELAREKAPSIIFIDEIDAIAAKR 240 (389)
T ss_pred hhccchHHHHHHHHHHHHhcCCeEEEEechhhhhccc
Confidence 9999999999999999998899999999999998765
No 19
>KOG0731|consensus
Probab=99.88 E-value=1.3e-22 Score=177.93 Aligned_cols=115 Identities=43% Similarity=0.815 Sum_probs=110.5
Q ss_pred cCCCCcccccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhhh
Q psy6208 80 SNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSK 159 (197)
Q Consensus 80 ~~~~~~~~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~~~~~~~v~~~~~~~~ 159 (197)
...++|.|+.|.++++.+|.+++.. +++|+.|.++|+..|+|+||+||||||||.||+|+|.+.+.||+.++++++...
T Consensus 305 ~t~V~FkDVAG~deAK~El~E~V~f-LKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE~ 383 (774)
T KOG0731|consen 305 NTGVKFKDVAGVDEAKEELMEFVKF-LKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVEM 383 (774)
T ss_pred CCCCccccccCcHHHHHHHHHHHHH-hcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHHH
Confidence 4458999999999999999999876 899999999999999999999999999999999999999999999999999999
Q ss_pred ccCccHHHHHHHHHHHhcCCCeEEEEcccCccCccc
Q psy6208 160 LAGESESNLRKAFEEADKNSPSIIFIDELDAIAPKR 195 (197)
Q Consensus 160 ~~~~~~~~~~~~~~~a~~~~~~vl~lDeid~l~~~r 195 (197)
+.+.....++.+|..++...||++|+||||.+..+|
T Consensus 384 ~~g~~asrvr~lf~~ar~~aP~iifideida~~~~r 419 (774)
T KOG0731|consen 384 FVGVGASRVRDLFPLARKNAPSIIFIDEIDAVGRKR 419 (774)
T ss_pred hcccchHHHHHHHHHhhccCCeEEEecccccccccc
Confidence 999889999999999999999999999999999988
No 20
>KOG0730|consensus
Probab=99.88 E-value=1e-22 Score=174.33 Aligned_cols=182 Identities=64% Similarity=1.090 Sum_probs=159.0
Q ss_pred CcchhhHHHHhHHHhhhcCcccccCCEEEEecCcceEEEEEEEecCCCeEEEcCceEEEEcCCCCcchhHHhhcCCCCcc
Q psy6208 7 GEMSNLFEVYLKPYFLEAYRPVHKDDLFIVRGGMRAVEFKIVDTDPAPYCIVAADTVIHCEGDPIKREEEEEASNAVGYD 86 (197)
Q Consensus 7 ~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (197)
....+.++.+...++.+.++++..+++. .....+.+++....+.+ .+...+...+.+++....... . +.++ +
T Consensus 113 ~i~~~~~d~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~--~v~~~t~~~~~~~~~~~~~~~-~-~~~~-~ 184 (693)
T KOG0730|consen 113 GIAGELFDVLERPFLLEALRPLVKGDTF---AGLNPAEFKVLELDPSP--QVTPDTELSYLGEPAKREEEE-L-PEVG-D 184 (693)
T ss_pred cchhhhhhhhhhhhhhhhhCccccccch---hhhhhhhhhccccccch--hcCccchhhhcCCCccccccc-c-cccc-c
Confidence 3456678889999999999998888887 45566777777666555 556666677777776654444 3 5677 8
Q ss_pred cccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhhhccCccHH
Q psy6208 87 DIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESES 166 (197)
Q Consensus 87 ~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~~~~~~~v~~~~~~~~~~~~~~~ 166 (197)
+++|...++.++++.+..++..+..+..+|+++++++|+|||||+|||.+++++|++.++.++.+++++++..+.|+++.
T Consensus 185 ~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~a~~~~i~~peli~k~~gEte~ 264 (693)
T KOG0730|consen 185 DIGGLKRQLSVIRELVELPLRHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEYGAFLFLINGPELISKFPGETES 264 (693)
T ss_pred ccchhHHHHHHHHHHHHhhhcchhhhhhcCCCCCCCccccCCCCCChHHHHHHHHHHhCceeEecccHHHHHhcccchHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCC-CeEEEEcccCccCcccC
Q psy6208 167 NLRKAFEEADKNS-PSIIFIDELDAIAPKRE 196 (197)
Q Consensus 167 ~~~~~~~~a~~~~-~~vl~lDeid~l~~~r~ 196 (197)
.++..|+.+...+ |+++||||+|.++|+|.
T Consensus 265 ~LR~~f~~a~k~~~psii~IdEld~l~p~r~ 295 (693)
T KOG0730|consen 265 NLRKAFAEALKFQVPSIIFIDELDALCPKRE 295 (693)
T ss_pred HHHHHHHHHhccCCCeeEeHHhHhhhCCccc
Confidence 9999999999988 99999999999999885
No 21
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=2.7e-22 Score=173.40 Aligned_cols=117 Identities=52% Similarity=0.931 Sum_probs=112.8
Q ss_pred cCCCCcccccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhhh
Q psy6208 80 SNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSK 159 (197)
Q Consensus 80 ~~~~~~~~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~~~~~~~v~~~~~~~~ 159 (197)
.+.++|++++|++..+..+++.+.+++.+++.+...+..++.++||+||||||||++|+++|++++.+|+.+..+++.++
T Consensus 236 ~~~v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~l~sk 315 (494)
T COG0464 236 DEDVTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSELLSK 315 (494)
T ss_pred CCCcceehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHHHhcc
Confidence 45789999999999999999999999999999998888999999999999999999999999999999999999999999
Q ss_pred ccCccHHHHHHHHHHHhcCCCeEEEEcccCccCcccC
Q psy6208 160 LAGESESNLRKAFEEADKNSPSIIFIDELDAIAPKRE 196 (197)
Q Consensus 160 ~~~~~~~~~~~~~~~a~~~~~~vl~lDeid~l~~~r~ 196 (197)
|+|++++.++.+|..|+..+||||||||+|.+.+.|.
T Consensus 316 ~vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~ 352 (494)
T COG0464 316 WVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRG 352 (494)
T ss_pred ccchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCC
Confidence 9999999999999999999999999999999999885
No 22
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.87 E-value=2.7e-22 Score=169.39 Aligned_cols=118 Identities=53% Similarity=0.957 Sum_probs=111.5
Q ss_pred hhcCCCCcccccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhh
Q psy6208 78 EASNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIM 157 (197)
Q Consensus 78 ~~~~~~~~~~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~~~~~~~v~~~~~~ 157 (197)
+..+..+|+||+|++.+++++.+++..++.+++.|..+|+.++.++||+||||||||++|+++|++++.+++.+.++++.
T Consensus 175 ~~~p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL~ 254 (438)
T PTZ00361 175 DKAPLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELI 254 (438)
T ss_pred ccCCCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecchhh
Confidence 44567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCccHHHHHHHHHHHhcCCCeEEEEcccCccCccc
Q psy6208 158 SKLAGESESNLRKAFEEADKNSPSIIFIDELDAIAPKR 195 (197)
Q Consensus 158 ~~~~~~~~~~~~~~~~~a~~~~~~vl~lDeid~l~~~r 195 (197)
..+.++....++.+|..+....|+||||||+|.+..+|
T Consensus 255 ~k~~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR 292 (438)
T PTZ00361 255 QKYLGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKR 292 (438)
T ss_pred hhhcchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccC
Confidence 99999998899999999999999999999999998765
No 23
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.87 E-value=7.1e-22 Score=177.76 Aligned_cols=117 Identities=52% Similarity=0.983 Sum_probs=112.2
Q ss_pred cCCCCcccccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhhh
Q psy6208 80 SNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSK 159 (197)
Q Consensus 80 ~~~~~~~~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~~~~~~~v~~~~~~~~ 159 (197)
.+.++|++++|++..++++.+.+.+++.+++.++.++..++.++|||||||||||++|+++|++++.+++.++++++.+.
T Consensus 447 ~~~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~~~ 526 (733)
T TIGR01243 447 VPNVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILSK 526 (733)
T ss_pred ccccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHhhc
Confidence 35679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCccHHHHHHHHHHHhcCCCeEEEEcccCccCcccC
Q psy6208 160 LAGESESNLRKAFEEADKNSPSIIFIDELDAIAPKRE 196 (197)
Q Consensus 160 ~~~~~~~~~~~~~~~a~~~~~~vl~lDeid~l~~~r~ 196 (197)
|+|+++..++.+|+.++...|+||||||+|.|+++|+
T Consensus 527 ~vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~ 563 (733)
T TIGR01243 527 WVGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARG 563 (733)
T ss_pred ccCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCC
Confidence 9999999999999999999999999999999998764
No 24
>KOG0737|consensus
Probab=99.86 E-value=2.6e-22 Score=162.17 Aligned_cols=116 Identities=47% Similarity=0.800 Sum_probs=108.6
Q ss_pred cCCCCcccccCcHHHHHHHHHHHHhcccChhhHhhhC-CCCCCceEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhh
Q psy6208 80 SNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIG-VKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMS 158 (197)
Q Consensus 80 ~~~~~~~~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~-~~~~~~ill~G~~GtGKT~la~ala~~~~~~~~~v~~~~~~~ 158 (197)
.-.++|+||+|++..++++++.+..|+.+|+.|..-+ ..++.||||+||||||||.+|+|+|++.+..|+.+..+.+.+
T Consensus 86 ~I~v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s~lt~ 165 (386)
T KOG0737|consen 86 EIGVSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSVSNLTS 165 (386)
T ss_pred hceeehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcceeeccccch
Confidence 3468999999999999999999999999999996433 467899999999999999999999999999999999999999
Q ss_pred hccCccHHHHHHHHHHHhcCCCeEEEEcccCccCccc
Q psy6208 159 KLAGESESNLRKAFEEADKNSPSIIFIDELDAIAPKR 195 (197)
Q Consensus 159 ~~~~~~~~~~~~~~~~a~~~~~~vl~lDeid~l~~~r 195 (197)
+|+|+.++.++.+|..|.+-.|++|||||+|++...|
T Consensus 166 KWfgE~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R 202 (386)
T KOG0737|consen 166 KWFGEAQKLVKAVFSLASKLQPSIIFIDEVDSFLGQR 202 (386)
T ss_pred hhHHHHHHHHHHHHhhhhhcCcceeehhhHHHHHhhc
Confidence 9999999999999999999999999999999998876
No 25
>KOG0651|consensus
Probab=99.85 E-value=2e-21 Score=153.91 Aligned_cols=117 Identities=44% Similarity=0.845 Sum_probs=112.7
Q ss_pred hcCCCCcccccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhh
Q psy6208 79 ASNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMS 158 (197)
Q Consensus 79 ~~~~~~~~~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~~~~~~~v~~~~~~~ 158 (197)
....++|++++|...++.++.+-++.++..+.++..+|+.+|.+++||||||+|||.+|++++..+++.++.+.++++.+
T Consensus 125 ~~~~~s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~ 204 (388)
T KOG0651|consen 125 DPRNISFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVD 204 (388)
T ss_pred CccccCHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhh
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCccHHHHHHHHHHHhcCCCeEEEEcccCccCccc
Q psy6208 159 KLAGESESNLRKAFEEADKNSPSIIFIDELDAIAPKR 195 (197)
Q Consensus 159 ~~~~~~~~~~~~~~~~a~~~~~~vl~lDeid~l~~~r 195 (197)
.+.|++...+++.|..|+...||+||+||||...++|
T Consensus 205 kyiGEsaRlIRemf~yA~~~~pciifmdeiDAigGRr 241 (388)
T KOG0651|consen 205 KYIGESARLIRDMFRYAREVIPCIIFMDEIDAIGGRR 241 (388)
T ss_pred hhcccHHHHHHHHHHHHhhhCceEEeehhhhhhccEE
Confidence 9999999999999999999999999999999998876
No 26
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.85 E-value=2.7e-21 Score=165.61 Aligned_cols=118 Identities=48% Similarity=0.883 Sum_probs=105.4
Q ss_pred hcCCCCcccccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHhCCe----------E
Q psy6208 79 ASNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAF----------F 148 (197)
Q Consensus 79 ~~~~~~~~~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~~~~----------~ 148 (197)
..+.++|+||+|++.+++++++.+..++.+++.|+..|+.+++++|||||||||||++++++|++++.+ +
T Consensus 175 ~~p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~f 254 (512)
T TIGR03689 175 EVPDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYF 254 (512)
T ss_pred cCCCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeE
Confidence 346889999999999999999999999999999999999999999999999999999999999998543 5
Q ss_pred EEEechhhhhhccCccHHHHHHHHHHHhc----CCCeEEEEcccCccCcccC
Q psy6208 149 FLINGPEIMSKLAGESESNLRKAFEEADK----NSPSIIFIDELDAIAPKRE 196 (197)
Q Consensus 149 ~~v~~~~~~~~~~~~~~~~~~~~~~~a~~----~~~~vl~lDeid~l~~~r~ 196 (197)
+.+..+++.+.+.++.+..++.+|..+.. +.|+||||||+|.++++|.
T Consensus 255 l~v~~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~ 306 (512)
T TIGR03689 255 LNIKGPELLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRG 306 (512)
T ss_pred EeccchhhcccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccC
Confidence 56667888899999999999999988765 3699999999999988763
No 27
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.85 E-value=4.8e-21 Score=159.79 Aligned_cols=117 Identities=56% Similarity=0.981 Sum_probs=109.6
Q ss_pred hcCCCCcccccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhh
Q psy6208 79 ASNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMS 158 (197)
Q Consensus 79 ~~~~~~~~~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~~~~~~~v~~~~~~~ 158 (197)
..+.++|+|++|++++++++.+++..++.+++.++.+|+.++.+++|+||||||||++|+++|++++.+++.+.+.++..
T Consensus 115 ~~p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~l~~ 194 (364)
T TIGR01242 115 ERPNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVR 194 (364)
T ss_pred cCCCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHHHHH
Confidence 45688999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred hccCccHHHHHHHHHHHhcCCCeEEEEcccCccCccc
Q psy6208 159 KLAGESESNLRKAFEEADKNSPSIIFIDELDAIAPKR 195 (197)
Q Consensus 159 ~~~~~~~~~~~~~~~~a~~~~~~vl~lDeid~l~~~r 195 (197)
.+.++....++.+|+.+....|+||||||+|.+..+|
T Consensus 195 ~~~g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~ 231 (364)
T TIGR01242 195 KYIGEGARLVREIFELAKEKAPSIIFIDEIDAIAAKR 231 (364)
T ss_pred HhhhHHHHHHHHHHHHHHhcCCcEEEhhhhhhhcccc
Confidence 8888888889999999988889999999999997654
No 28
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.85 E-value=5.7e-21 Score=165.13 Aligned_cols=116 Identities=45% Similarity=0.822 Sum_probs=108.0
Q ss_pred cCCCCcccccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhhh
Q psy6208 80 SNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSK 159 (197)
Q Consensus 80 ~~~~~~~~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~~~~~~~v~~~~~~~~ 159 (197)
.+.++|+|++|.+..+.++.+.+.. +..++.+..+|...+.++||+||||||||++++++|.+.+.+++.++++++...
T Consensus 49 ~~~~~~~di~g~~~~k~~l~~~~~~-l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~~ 127 (495)
T TIGR01241 49 KPKVTFKDVAGIDEAKEELMEIVDF-LKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM 127 (495)
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHH-HHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHHHHH
Confidence 4578999999999999999998876 788889999999999999999999999999999999999999999999999999
Q ss_pred ccCccHHHHHHHHHHHhcCCCeEEEEcccCccCcccC
Q psy6208 160 LAGESESNLRKAFEEADKNSPSIIFIDELDAIAPKRE 196 (197)
Q Consensus 160 ~~~~~~~~~~~~~~~a~~~~~~vl~lDeid~l~~~r~ 196 (197)
+.+.....++.+|+.+....|+||||||+|.+.++|+
T Consensus 128 ~~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~ 164 (495)
T TIGR01241 128 FVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRG 164 (495)
T ss_pred HhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhccc
Confidence 9998999999999999999999999999999988764
No 29
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.83 E-value=4.5e-20 Score=158.03 Aligned_cols=112 Identities=31% Similarity=0.451 Sum_probs=98.9
Q ss_pred CCCCcccccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhhhc
Q psy6208 81 NAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKL 160 (197)
Q Consensus 81 ~~~~~~~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~~~~~~~v~~~~~~~~~ 160 (197)
+..+|++++|++..++.+.+....+ .......|+..++++||+||||||||++|+++|++++.+++.+++..+.+.+
T Consensus 223 ~~~~~~dvgGl~~lK~~l~~~~~~~---~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~~~~ 299 (489)
T CHL00195 223 VNEKISDIGGLDNLKDWLKKRSTSF---SKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLFGGI 299 (489)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHh---hHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhcccc
Confidence 4578999999999999888755432 2334567888999999999999999999999999999999999999999999
Q ss_pred cCccHHHHHHHHHHHhcCCCeEEEEcccCccCccc
Q psy6208 161 AGESESNLRKAFEEADKNSPSIIFIDELDAIAPKR 195 (197)
Q Consensus 161 ~~~~~~~~~~~~~~a~~~~~~vl~lDeid~l~~~r 195 (197)
.|+++..++.+|+.+...+||||||||||.+++++
T Consensus 300 vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~ 334 (489)
T CHL00195 300 VGESESRMRQMIRIAEALSPCILWIDEIDKAFSNS 334 (489)
T ss_pred cChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccc
Confidence 99999999999999999999999999999987753
No 30
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=3.8e-20 Score=159.60 Aligned_cols=116 Identities=44% Similarity=0.825 Sum_probs=110.5
Q ss_pred cCCCCcccccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhhh
Q psy6208 80 SNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSK 159 (197)
Q Consensus 80 ~~~~~~~~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~~~~~~~v~~~~~~~~ 159 (197)
...++|.|+.|.+++++++.+.+.. ++.|..|..+|...|.++++.||||||||.||+|+|.+.+.||+.++.+++...
T Consensus 144 ~~~v~F~DVAG~dEakeel~EiVdf-Lk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVem 222 (596)
T COG0465 144 QVKVTFADVAGVDEAKEELSELVDF-LKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM 222 (596)
T ss_pred ccCcChhhhcCcHHHHHHHHHHHHH-HhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhhh
Confidence 3468999999999999999998876 889999999999999999999999999999999999999999999999999999
Q ss_pred ccCccHHHHHHHHHHHhcCCCeEEEEcccCccCcccC
Q psy6208 160 LAGESESNLRKAFEEADKNSPSIIFIDELDAIAPKRE 196 (197)
Q Consensus 160 ~~~~~~~~~~~~~~~a~~~~~~vl~lDeid~l~~~r~ 196 (197)
++|-....++.+|+.|++.+|||+||||+|.+..+|.
T Consensus 223 fVGvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg 259 (596)
T COG0465 223 FVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRG 259 (596)
T ss_pred hcCCCcHHHHHHHHHhhccCCCeEEEehhhhcccccC
Confidence 9999999999999999999999999999999998884
No 31
>CHL00176 ftsH cell division protein; Validated
Probab=99.81 E-value=1e-19 Score=160.19 Aligned_cols=114 Identities=42% Similarity=0.804 Sum_probs=104.9
Q ss_pred CCCCcccccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhhhc
Q psy6208 81 NAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKL 160 (197)
Q Consensus 81 ~~~~~~~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~~~~~~~v~~~~~~~~~ 160 (197)
..++|+|++|.++.++++.+.+.. +..+..+..++...+.++||+||||||||++|+++|.+.+.+++.++++++...+
T Consensus 178 ~~~~f~dv~G~~~~k~~l~eiv~~-lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~~~ 256 (638)
T CHL00176 178 TGITFRDIAGIEEAKEEFEEVVSF-LKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVEMF 256 (638)
T ss_pred CCCCHHhccChHHHHHHHHHHHHH-HhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHHHh
Confidence 457999999999999999888765 7888889999999999999999999999999999999999999999999998888
Q ss_pred cCccHHHHHHHHHHHhcCCCeEEEEcccCccCccc
Q psy6208 161 AGESESNLRKAFEEADKNSPSIIFIDELDAIAPKR 195 (197)
Q Consensus 161 ~~~~~~~~~~~~~~a~~~~~~vl~lDeid~l~~~r 195 (197)
.+.....++.+|+.+....||||||||+|.+..+|
T Consensus 257 ~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r 291 (638)
T CHL00176 257 VGVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQR 291 (638)
T ss_pred hhhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcc
Confidence 88778889999999999999999999999998665
No 32
>KOG0740|consensus
Probab=99.81 E-value=7.9e-20 Score=152.04 Aligned_cols=118 Identities=47% Similarity=0.812 Sum_probs=110.7
Q ss_pred hhcCCCCcccccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhh
Q psy6208 78 EASNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIM 157 (197)
Q Consensus 78 ~~~~~~~~~~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~~~~~~~v~~~~~~ 157 (197)
...+.+.|+|+.|++.+++.+.+++.+++..+..|..+. .+..++|+.||||+|||+|++|+|.+++..|+.++++.+.
T Consensus 145 ~~~~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~glr-~p~rglLLfGPpgtGKtmL~~aiAsE~~atff~iSassLt 223 (428)
T KOG0740|consen 145 DTLRNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGLR-EPVRGLLLFGPPGTGKTMLAKAIATESGATFFNISASSLT 223 (428)
T ss_pred ccCCcccccCCcchhhHHHHhhhhhhhcccchHhhhccc-cccchhheecCCCCchHHHHHHHHhhhcceEeeccHHHhh
Confidence 345679999999999999999999999999999998875 5677999999999999999999999999999999999999
Q ss_pred hhccCccHHHHHHHHHHHhcCCCeEEEEcccCccCcccC
Q psy6208 158 SKLAGESESNLRKAFEEADKNSPSIIFIDELDAIAPKRE 196 (197)
Q Consensus 158 ~~~~~~~~~~~~~~~~~a~~~~~~vl~lDeid~l~~~r~ 196 (197)
++|+|+.++.++.+|.-|+..+|+|+||||+|.++.+|.
T Consensus 224 sK~~Ge~eK~vralf~vAr~~qPsvifidEidslls~Rs 262 (428)
T KOG0740|consen 224 SKYVGESEKLVRALFKVARSLQPSVIFIDEIDSLLSKRS 262 (428)
T ss_pred hhccChHHHHHHHHHHHHHhcCCeEEEechhHHHHhhcC
Confidence 999999999999999999999999999999999998873
No 33
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.81 E-value=1.4e-19 Score=147.83 Aligned_cols=113 Identities=24% Similarity=0.351 Sum_probs=88.7
Q ss_pred CCCcccc-cCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhhhc
Q psy6208 82 AVGYDDI-GGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKL 160 (197)
Q Consensus 82 ~~~~~~i-~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~~~~~~~v~~~~~~~~~ 160 (197)
..+|+++ +|+--...-+.+.+....+ .+...+++..+.+++||||||||||++|+++|++++.+++.+++.++.+.+
T Consensus 111 ~~~f~~~~g~~~~~p~f~dk~~~hi~k--n~l~~~~ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~ 188 (413)
T PLN00020 111 TRSFDNLVGGYYIAPAFMDKVAVHIAK--NFLALPNIKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESEN 188 (413)
T ss_pred hcchhhhcCccccCHHHHHHHHHHHHh--hhhhccCCCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCc
Confidence 3455665 4544433333333322111 112235678999999999999999999999999999999999999999999
Q ss_pred cCccHHHHHHHHHHHhc-----CCCeEEEEcccCccCcccC
Q psy6208 161 AGESESNLRKAFEEADK-----NSPSIIFIDELDAIAPKRE 196 (197)
Q Consensus 161 ~~~~~~~~~~~~~~a~~-----~~~~vl~lDeid~l~~~r~ 196 (197)
.|++++.++++|+.|.. ++||||||||||.++++|+
T Consensus 189 vGEsEk~IR~~F~~A~~~a~~~~aPcVLFIDEIDA~~g~r~ 229 (413)
T PLN00020 189 AGEPGKLIRQRYREAADIIKKKGKMSCLFINDLDAGAGRFG 229 (413)
T ss_pred CCcHHHHHHHHHHHHHHHhhccCCCeEEEEehhhhcCCCCC
Confidence 99999999999998864 5799999999999999874
No 34
>KOG0732|consensus
Probab=99.77 E-value=9.7e-19 Score=157.46 Aligned_cols=116 Identities=51% Similarity=0.897 Sum_probs=108.9
Q ss_pred cCCCCcccccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHh-----CCeEEEEech
Q psy6208 80 SNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANET-----GAFFFLINGP 154 (197)
Q Consensus 80 ~~~~~~~~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~-----~~~~~~v~~~ 154 (197)
...++|+++||++..+.++++.+..|+.+|+.|..+++.+++++|++||||||||..|+++|... ...|+.-..+
T Consensus 259 ~~~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkga 338 (1080)
T KOG0732|consen 259 DSSVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKGA 338 (1080)
T ss_pred hcccCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccccchhhhcCc
Confidence 34789999999999999999999999999999999999999999999999999999999999887 3456667788
Q ss_pred hhhhhccCccHHHHHHHHHHHhcCCCeEEEEcccCccCccc
Q psy6208 155 EIMSKLAGESESNLRKAFEEADKNSPSIIFIDELDAIAPKR 195 (197)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~a~~~~~~vl~lDeid~l~~~r 195 (197)
+..++|+|+.+..++-+|+.|++..|+|+|+||||-|+|.|
T Consensus 339 D~lskwvgEaERqlrllFeeA~k~qPSIIffdeIdGlapvr 379 (1080)
T KOG0732|consen 339 DCLSKWVGEAERQLRLLFEEAQKTQPSIIFFDEIDGLAPVR 379 (1080)
T ss_pred hhhccccCcHHHHHHHHHHHHhccCceEEeccccccccccc
Confidence 99999999999999999999999999999999999999988
No 35
>KOG0741|consensus
Probab=99.77 E-value=1.1e-17 Score=140.70 Aligned_cols=120 Identities=41% Similarity=0.707 Sum_probs=102.7
Q ss_pred HhhcCCCCccc--ccCcHHHHHHH-HHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHhCC-eEEEEe
Q psy6208 77 EEASNAVGYDD--IGGCRKQLAQI-KEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGA-FFFLIN 152 (197)
Q Consensus 77 ~~~~~~~~~~~--i~g~~~~~~~l-~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~~~-~~~~v~ 152 (197)
.-.+|.+.|++ |||++.....+ +++...-..-|+..+.+|+...+|||||||||||||.+||.|...++. .--.+|
T Consensus 210 ~ii~Pdf~Fe~mGIGGLd~EFs~IFRRAFAsRvFpp~vie~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIVN 289 (744)
T KOG0741|consen 210 SIINPDFNFESMGIGGLDKEFSDIFRRAFASRVFPPEVIEQLGIKHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVN 289 (744)
T ss_pred cccCCCCChhhcccccchHHHHHHHHHHHHhhcCCHHHHHHcCccceeeEEEECCCCCChhHHHHHHHHHhcCCCCcccC
Confidence 34567888887 78999988887 455566667788999999999999999999999999999999999965 455689
Q ss_pred chhhhhhccCccHHHHHHHHHHHhc--------CCCeEEEEcccCccCcccC
Q psy6208 153 GPEIMSKLAGESESNLRKAFEEADK--------NSPSIIFIDELDAIAPKRE 196 (197)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~a~~--------~~~~vl~lDeid~l~~~r~ 196 (197)
++++.++|+|+++.+++.+|..|.. ..-.||++||||.+|.+|.
T Consensus 290 GPeIL~KYVGeSE~NvR~LFaDAEeE~r~~g~~SgLHIIIFDEiDAICKqRG 341 (744)
T KOG0741|consen 290 GPEILNKYVGESEENVRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRG 341 (744)
T ss_pred cHHHHHHhhcccHHHHHHHHHhHHHHHHhhCccCCceEEEehhhHHHHHhcC
Confidence 9999999999999999999988743 2246999999999999885
No 36
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.68 E-value=1.3e-16 Score=122.61 Aligned_cols=102 Identities=28% Similarity=0.492 Sum_probs=66.8
Q ss_pred hhcCCCCcccccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhh
Q psy6208 78 EASNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIM 157 (197)
Q Consensus 78 ~~~~~~~~~~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~~~~~~~v~~~~~~ 157 (197)
..-.+-++++++|++..+..+.-++...... -....+++||||||+|||+||+.+|++++.++..++++.+.
T Consensus 16 ~~lRP~~L~efiGQ~~l~~~l~i~i~aa~~r--------~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~ 87 (233)
T PF05496_consen 16 ERLRPKSLDEFIGQEHLKGNLKILIRAAKKR--------GEALDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIE 87 (233)
T ss_dssp HHTS-SSCCCS-S-HHHHHHHHHHHHHHHCT--------TS---EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC--
T ss_pred HhcCCCCHHHccCcHHHHhhhHHHHHHHHhc--------CCCcceEEEECCCccchhHHHHHHHhccCCCeEeccchhhh
Confidence 3445679999999999999998877653221 12345799999999999999999999999999988875441
Q ss_pred hhccCccHHHHHHHHHHHhcCCCeEEEEcccCccCccc
Q psy6208 158 SKLAGESESNLRKAFEEADKNSPSIIFIDELDAIAPKR 195 (197)
Q Consensus 158 ~~~~~~~~~~~~~~~~~a~~~~~~vl~lDeid~l~~~r 195 (197)
....+..++.... ..+||||||||+|....
T Consensus 88 ------k~~dl~~il~~l~--~~~ILFIDEIHRlnk~~ 117 (233)
T PF05496_consen 88 ------KAGDLAAILTNLK--EGDILFIDEIHRLNKAQ 117 (233)
T ss_dssp ------SCHHHHHHHHT----TT-EEEECTCCC--HHH
T ss_pred ------hHHHHHHHHHhcC--CCcEEEEechhhccHHH
Confidence 1233444444433 35799999999998654
No 37
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.67 E-value=3e-16 Score=139.33 Aligned_cols=114 Identities=44% Similarity=0.827 Sum_probs=102.9
Q ss_pred CCCcccccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhhhcc
Q psy6208 82 AVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLA 161 (197)
Q Consensus 82 ~~~~~~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~~~~~~~v~~~~~~~~~~ 161 (197)
...|+++.|.+..++++.+.+.. +..+..+..++...+.+++|+||||||||+++++++.+++.+++.++++++...+.
T Consensus 148 ~~~~~di~g~~~~~~~l~~i~~~-~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~~~~ 226 (644)
T PRK10733 148 KTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFV 226 (644)
T ss_pred hCcHHHHcCHHHHHHHHHHHHHH-hhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHHhhh
Confidence 56789999999999999998876 55667777777788889999999999999999999999999999999999998888
Q ss_pred CccHHHHHHHHHHHhcCCCeEEEEcccCccCcccC
Q psy6208 162 GESESNLRKAFEEADKNSPSIIFIDELDAIAPKRE 196 (197)
Q Consensus 162 ~~~~~~~~~~~~~a~~~~~~vl~lDeid~l~~~r~ 196 (197)
+.....++.+|..+....|+||||||+|.+..+|+
T Consensus 227 g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~ 261 (644)
T PRK10733 227 GVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRG 261 (644)
T ss_pred cccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccC
Confidence 88888999999999998999999999999987663
No 38
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.67 E-value=2.5e-16 Score=112.49 Aligned_cols=73 Identities=51% Similarity=0.857 Sum_probs=68.7
Q ss_pred eEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhhhccCccHHHHHHHHHHHhcCC-CeEEEEcccCccCccc
Q psy6208 123 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNS-PSIIFIDELDAIAPKR 195 (197)
Q Consensus 123 ill~G~~GtGKT~la~ala~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~a~~~~-~~vl~lDeid~l~~~r 195 (197)
|||+||||||||++++.+|+.++.+++.+++.++.+.+.+.....+...|..+.... |+||+|||+|.+.++.
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~ 74 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPKS 74 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHHC
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccccccccceeeeeccchhccccc
Confidence 689999999999999999999999999999999998888889999999999998877 9999999999998875
No 39
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.66 E-value=4.8e-16 Score=124.19 Aligned_cols=105 Identities=24% Similarity=0.345 Sum_probs=84.0
Q ss_pred cccccCcHHHHHHHHHHHHhcccChhhHhhhCCC---CCCceEEECCCCCcHHHHHHHHHHHh-------CCeEEEEech
Q psy6208 85 YDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVK---PPRGILLYGPPGTGKTLIARAVANET-------GAFFFLINGP 154 (197)
Q Consensus 85 ~~~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~---~~~~ill~G~~GtGKT~la~ala~~~-------~~~~~~v~~~ 154 (197)
+++++|++.+++++++.+.++... ......|.. ...+++|+||||||||++|+++|+.+ ...++.++++
T Consensus 5 l~~~~Gl~~vk~~i~~~~~~~~~~-~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~ 83 (261)
T TIGR02881 5 LSRMVGLDEVKALIKEIYAWIQIN-EKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERA 83 (261)
T ss_pred HHHhcChHHHHHHHHHHHHHHHHH-HHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHH
Confidence 468999999999999988776433 222233433 34568999999999999999999874 3478889999
Q ss_pred hhhhhccCccHHHHHHHHHHHhcCCCeEEEEcccCccCc
Q psy6208 155 EIMSKLAGESESNLRKAFEEADKNSPSIIFIDELDAIAP 193 (197)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~a~~~~~~vl~lDeid~l~~ 193 (197)
++.+.++++....+.++|+.+. .+||||||+|.|..
T Consensus 84 ~l~~~~~g~~~~~~~~~~~~a~---~~VL~IDE~~~L~~ 119 (261)
T TIGR02881 84 DLVGEYIGHTAQKTREVIKKAL---GGVLFIDEAYSLAR 119 (261)
T ss_pred HhhhhhccchHHHHHHHHHhcc---CCEEEEechhhhcc
Confidence 9999999998888888888764 46999999999975
No 40
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.64 E-value=5.7e-16 Score=145.72 Aligned_cols=87 Identities=22% Similarity=0.360 Sum_probs=73.7
Q ss_pred hhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhhhc----------cC----------------
Q psy6208 109 PSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKL----------AG---------------- 162 (197)
Q Consensus 109 ~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~~~~~~~v~~~~~~~~~----------~~---------------- 162 (197)
.....++|+.+++||||+||||||||.||+|+|.+++.|++.++++++...+ .+
T Consensus 1619 kP~slrLGl~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~~ 1698 (2281)
T CHL00206 1619 KPFSLRLALSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLD 1698 (2281)
T ss_pred cCHHHHcCCCCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhcccccccccccccccccccccccccccccc
Confidence 3455778899999999999999999999999999999999999999988543 11
Q ss_pred ---------------ccH--HHHHHHHHHHhcCCCeEEEEcccCccCccc
Q psy6208 163 ---------------ESE--SNLRKAFEEADKNSPSIIFIDELDAIAPKR 195 (197)
Q Consensus 163 ---------------~~~--~~~~~~~~~a~~~~~~vl~lDeid~l~~~r 195 (197)
..+ ..++.+|+.|++.+||||+|||||.++.+.
T Consensus 1699 ~e~~e~~n~~~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~d 1748 (2281)
T CHL00206 1699 TELLTMMNALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVNE 1748 (2281)
T ss_pred hhhhhhcchhhhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCCc
Confidence 111 237889999999999999999999998763
No 41
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.64 E-value=1.5e-15 Score=122.72 Aligned_cols=104 Identities=21% Similarity=0.354 Sum_probs=84.9
Q ss_pred cccCcHHHHHHHHHHHHhcccChhhHhhhCCCC---CCceEEECCCCCcHHHHHHHHHHHhC-------CeEEEEechhh
Q psy6208 87 DIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKP---PRGILLYGPPGTGKTLIARAVANETG-------AFFFLINGPEI 156 (197)
Q Consensus 87 ~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~---~~~ill~G~~GtGKT~la~ala~~~~-------~~~~~v~~~~~ 156 (197)
+++|++++++++.+++.+ ...+......|... ..+++|+||||||||++|++++..+. .++++++++++
T Consensus 23 ~l~Gl~~vk~~i~e~~~~-~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l 101 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAAL-LLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDL 101 (284)
T ss_pred hccCHHHHHHHHHHHHHH-HHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHH
Confidence 689999999999998877 44556666666553 44799999999999999999987762 37999999999
Q ss_pred hhhccCccHHHHHHHHHHHhcCCCeEEEEcccCccCcc
Q psy6208 157 MSKLAGESESNLRKAFEEADKNSPSIIFIDELDAIAPK 194 (197)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~a~~~~~~vl~lDeid~l~~~ 194 (197)
...+.|+....+..+|+.+. .++|||||++.|.+.
T Consensus 102 ~~~~~g~~~~~~~~~~~~a~---~gvL~iDEi~~L~~~ 136 (284)
T TIGR02880 102 VGQYIGHTAPKTKEILKRAM---GGVLFIDEAYYLYRP 136 (284)
T ss_pred hHhhcccchHHHHHHHHHcc---CcEEEEechhhhccC
Confidence 88888888777888888764 369999999998543
No 42
>CHL00181 cbbX CbbX; Provisional
Probab=99.63 E-value=1.7e-15 Score=122.36 Aligned_cols=105 Identities=21% Similarity=0.359 Sum_probs=83.4
Q ss_pred ccccCcHHHHHHHHHHHHhcccChhhHhhhCCCC---CCceEEECCCCCcHHHHHHHHHHHh-------CCeEEEEechh
Q psy6208 86 DDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKP---PRGILLYGPPGTGKTLIARAVANET-------GAFFFLINGPE 155 (197)
Q Consensus 86 ~~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~---~~~ill~G~~GtGKT~la~ala~~~-------~~~~~~v~~~~ 155 (197)
++++|++.+++++.+++.+. .........|... +.+++|+||||||||++|+++|+.+ ..+++++++.+
T Consensus 23 ~~l~Gl~~vK~~i~e~~~~~-~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~ 101 (287)
T CHL00181 23 EELVGLAPVKTRIREIAALL-LIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDD 101 (287)
T ss_pred HhcCCcHHHHHHHHHHHHHH-HHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHH
Confidence 37999999999999988763 3345555666543 3358999999999999999998875 23689999999
Q ss_pred hhhhccCccHHHHHHHHHHHhcCCCeEEEEcccCccCcc
Q psy6208 156 IMSKLAGESESNLRKAFEEADKNSPSIIFIDELDAIAPK 194 (197)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~a~~~~~~vl~lDeid~l~~~ 194 (197)
+.+.+.|+.......+++.+. .+||||||++.|...
T Consensus 102 l~~~~~g~~~~~~~~~l~~a~---ggVLfIDE~~~l~~~ 137 (287)
T CHL00181 102 LVGQYIGHTAPKTKEVLKKAM---GGVLFIDEAYYLYKP 137 (287)
T ss_pred HHHHHhccchHHHHHHHHHcc---CCEEEEEccchhccC
Confidence 999998888777777777764 469999999998543
No 43
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.60 E-value=8.7e-16 Score=131.53 Aligned_cols=180 Identities=19% Similarity=0.251 Sum_probs=108.0
Q ss_pred ccCCCcchhhHHHHhHHHhhhcCcccccCCEEEEecCcceEEEEEEEecCCCeE-EEcC---ceE-EEEcCCCC-cchhH
Q psy6208 3 LVPEGEMSNLFEVYLKPYFLEAYRPVHKDDLFIVRGGMRAVEFKIVDTDPAPYC-IVAA---DTV-IHCEGDPI-KREEE 76 (197)
Q Consensus 3 ~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~---~~~-~~~~~~~~-~~~~~ 76 (197)
...+.....++|.|...|+.++|.......+..+.+....+.|.+.. .+.... .... ... ......+. .....
T Consensus 34 ~~~~~l~l~vPn~F~~~wi~~~y~~~I~~al~~~~g~~~~I~~~v~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (450)
T PRK00149 34 LEDNTLTLYVPNRFVKDWIEKNYLDLIEEALQELTGENPKVEFVRPA-APSAEAPAAPAAAPPSSAAPAAAAEEAEPLFG 112 (450)
T ss_pred eeCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHcCCCceEEEEECC-Cccccccccccccccccccccccccccccccc
Confidence 34577888999999999999999887776666555566666665422 111000 0000 000 00000000 00112
Q ss_pred HhhcCCCCcccc-cCcHH--HHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHh-----CCeE
Q psy6208 77 EEASNAVGYDDI-GGCRK--QLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANET-----GAFF 148 (197)
Q Consensus 77 ~~~~~~~~~~~i-~g~~~--~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~-----~~~~ 148 (197)
..+++.++|+++ .|.+. +...+.++...+ + ....+++||||+|+|||||++++++++ +..+
T Consensus 113 ~~l~~~~tfd~fv~g~~n~~a~~~~~~~~~~~----------~-~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v 181 (450)
T PRK00149 113 SPLNPKYTFDNFVVGKSNRLAHAAALAVAENP----------G-KAYNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKV 181 (450)
T ss_pred cCCCCCCcccccccCCCcHHHHHHHHHHHhCc----------C-ccCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeE
Confidence 345678899994 34333 444444443322 1 223569999999999999999999987 5679
Q ss_pred EEEechhhhhhccCccHHHHHHHHHHHhcCCCeEEEEcccCccCccc
Q psy6208 149 FLINGPEIMSKLAGESESNLRKAFEEADKNSPSIIFIDELDAIAPKR 195 (197)
Q Consensus 149 ~~v~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~vl~lDeid~l~~~r 195 (197)
+++++.++...+...........|....+ .+++|+|||+|.+.+++
T Consensus 182 ~yi~~~~~~~~~~~~~~~~~~~~~~~~~~-~~dlLiiDDi~~l~~~~ 227 (450)
T PRK00149 182 VYVTSEKFTNDFVNALRNNTMEEFKEKYR-SVDVLLIDDIQFLAGKE 227 (450)
T ss_pred EEEEHHHHHHHHHHHHHcCcHHHHHHHHh-cCCEEEEehhhhhcCCH
Confidence 99999888766543322222223333333 47899999999997753
No 44
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.59 E-value=1.4e-15 Score=128.63 Aligned_cols=178 Identities=18% Similarity=0.234 Sum_probs=104.1
Q ss_pred cCCCcchhhHHHHhHHHhhhcCcccccCCEEEEecCcceEEEEEEEecCCCeEEEcCceEEEEcCCCCcchhHHhhcCCC
Q psy6208 4 VPEGEMSNLFEVYLKPYFLEAYRPVHKDDLFIVRGGMRAVEFKIVDTDPAPYCIVAADTVIHCEGDPIKREEEEEASNAV 83 (197)
Q Consensus 4 ~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (197)
..+.....++|.|...|+.++|.......+..+.+....+.|.+....+...... ..........+........+++.+
T Consensus 29 ~~~~l~l~~Pn~F~~~wi~~~y~~~i~~~l~~~~g~~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~ 107 (405)
T TIGR00362 29 EGGTLIISVPNEFAKDWIEKNYLDLIEELLQELFGEEIEIEFVVGDPEESLEPTS-AKPEPKPPEASAEPTNNSPLNPKY 107 (405)
T ss_pred eCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEecCCcccccccc-cccccCcccccccccccCCCCCCC
Confidence 4566788889999999999998877776666565666666665432111100000 000000000000001123456788
Q ss_pred Cccc-ccCcHHH--HHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHh-----CCeEEEEechh
Q psy6208 84 GYDD-IGGCRKQ--LAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANET-----GAFFFLINGPE 155 (197)
Q Consensus 84 ~~~~-i~g~~~~--~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~-----~~~~~~v~~~~ 155 (197)
+|++ ++|.+.. ...+.++...+ .....+++||||+|+|||||++++++++ +..++++++.+
T Consensus 108 tfd~fi~g~~n~~a~~~~~~~~~~~-----------~~~~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~ 176 (405)
T TIGR00362 108 TFDNFVVGKSNRLAHAAALAVAENP-----------GKAYNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEK 176 (405)
T ss_pred cccccccCCcHHHHHHHHHHHHhCc-----------CccCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHH
Confidence 9999 4454443 22333333221 1224569999999999999999999887 57899999988
Q ss_pred hhhhccCccHHHHHHHHHHHhcCCCeEEEEcccCccCcc
Q psy6208 156 IMSKLAGESESNLRKAFEEADKNSPSIIFIDELDAIAPK 194 (197)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~a~~~~~~vl~lDeid~l~~~ 194 (197)
+...+...........|....+ .+++|+|||+|.+.++
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~-~~dlLiiDDi~~l~~~ 214 (405)
T TIGR00362 177 FTNDFVNALRNNKMEEFKEKYR-SVDLLLIDDIQFLAGK 214 (405)
T ss_pred HHHHHHHHHHcCCHHHHHHHHH-hCCEEEEehhhhhcCC
Confidence 7665432221111112322222 3689999999998775
No 45
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.57 E-value=2.7e-15 Score=127.93 Aligned_cols=171 Identities=14% Similarity=0.232 Sum_probs=101.8
Q ss_pred cCCCcchhhHHHHhHHHhhhcCcccccCCEEEEecCcceEEEEEEEecCCCeEEEcCceEEEEcCCCCcchhHHhhcCCC
Q psy6208 4 VPEGEMSNLFEVYLKPYFLEAYRPVHKDDLFIVRGGMRAVEFKIVDTDPAPYCIVAADTVIHCEGDPIKREEEEEASNAV 83 (197)
Q Consensus 4 ~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (197)
..+.....++|.|...|+.++|.......+..+.+....+.|.+....+.... ..... ..........++.+
T Consensus 31 ~~~~~~l~~p~~f~~~~i~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~---~~~~~-----~~~~~~~~~l~~~~ 102 (440)
T PRK14088 31 EGNKVVFSVGNLFIKEWLEKKYGSVLSKAVKEVLGKDATFEITYEAFEPHSSY---SEPLV-----KKRAVLLTPLNPDY 102 (440)
T ss_pred eCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHHHhCCCceEEEEeCCCCccccc---cCCcc-----cccccccCCCCCCC
Confidence 45667888999999999999987776655544444444444433111111000 00000 00001123456789
Q ss_pred Cccccc-CcHHH--HHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHh-----CCeEEEEechh
Q psy6208 84 GYDDIG-GCRKQ--LAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANET-----GAFFFLINGPE 155 (197)
Q Consensus 84 ~~~~i~-g~~~~--~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~-----~~~~~~v~~~~ 155 (197)
+|++++ |.+.. ...+.+....+ ....+++||||+|+|||||++++++++ +..++++++.+
T Consensus 103 tFdnFv~g~~n~~a~~~~~~~~~~~------------~~~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~ 170 (440)
T PRK14088 103 TFENFVVGPGNSFAYHAALEVAKNP------------GRYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEK 170 (440)
T ss_pred cccccccCCchHHHHHHHHHHHhCc------------CCCCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHH
Confidence 999964 54332 22233322211 123469999999999999999999986 46889999988
Q ss_pred hhhhccCccHHHHHHHHHHHhcCCCeEEEEcccCccCcc
Q psy6208 156 IMSKLAGESESNLRKAFEEADKNSPSIIFIDELDAIAPK 194 (197)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~a~~~~~~vl~lDeid~l~~~ 194 (197)
+...+.......-...|....+..+++|+|||++.+.++
T Consensus 171 f~~~~~~~~~~~~~~~f~~~~~~~~dvLlIDDi~~l~~~ 209 (440)
T PRK14088 171 FLNDLVDSMKEGKLNEFREKYRKKVDVLLIDDVQFLIGK 209 (440)
T ss_pred HHHHHHHHHhcccHHHHHHHHHhcCCEEEEechhhhcCc
Confidence 876654322211112344434445899999999988754
No 46
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.56 E-value=8.7e-15 Score=115.28 Aligned_cols=99 Identities=27% Similarity=0.522 Sum_probs=78.9
Q ss_pred cCCCCcccccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhhh
Q psy6208 80 SNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSK 159 (197)
Q Consensus 80 ~~~~~~~~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~~~~~~~v~~~~~~~~ 159 (197)
..+..|++.+|+++.++++.-++....... ...-++||+||||.|||+||+.+|++++..+...+++.+
T Consensus 20 lRP~~l~efiGQ~~vk~~L~ifI~AAk~r~--------e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~l--- 88 (332)
T COG2255 20 LRPKTLDEFIGQEKVKEQLQIFIKAAKKRG--------EALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPAL--- 88 (332)
T ss_pred cCcccHHHhcChHHHHHHHHHHHHHHHhcC--------CCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEecccccc---
Confidence 346789999999999999999987653332 344579999999999999999999999999888887766
Q ss_pred ccCccHHHHHHHHHHHhcCCCeEEEEcccCccCcc
Q psy6208 160 LAGESESNLRKAFEEADKNSPSIIFIDELDAIAPK 194 (197)
Q Consensus 160 ~~~~~~~~~~~~~~~a~~~~~~vl~lDeid~l~~~ 194 (197)
+....+..++..... .+||||||||+|.+.
T Consensus 89 ---eK~gDlaaiLt~Le~--~DVLFIDEIHrl~~~ 118 (332)
T COG2255 89 ---EKPGDLAAILTNLEE--GDVLFIDEIHRLSPA 118 (332)
T ss_pred ---cChhhHHHHHhcCCc--CCeEEEehhhhcChh
Confidence 334455666665443 479999999999875
No 47
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.54 E-value=2e-14 Score=117.92 Aligned_cols=97 Identities=31% Similarity=0.521 Sum_probs=75.9
Q ss_pred cCCCCcccccCcHHHHHH---HHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHhCCeEEEEechhh
Q psy6208 80 SNAVGYDDIGGCRKQLAQ---IKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEI 156 (197)
Q Consensus 80 ~~~~~~~~i~g~~~~~~~---l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~~~~~~~v~~~~~ 156 (197)
-.+-++++++|++..+.. |.+++.. ..-.+++||||||||||++|+.||...+..|..+++..-
T Consensus 18 mRP~~lde~vGQ~HLlg~~~~lrr~v~~-------------~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~~ 84 (436)
T COG2256 18 LRPKSLDEVVGQEHLLGEGKPLRRAVEA-------------GHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVTS 84 (436)
T ss_pred hCCCCHHHhcChHhhhCCCchHHHHHhc-------------CCCceeEEECCCCCCHHHHHHHHHHhhCCceEEeccccc
Confidence 346788999999887743 4444442 456689999999999999999999999999999986432
Q ss_pred hhhccCccHHHHHHHHHHHhc----CCCeEEEEcccCccCcccC
Q psy6208 157 MSKLAGESESNLRKAFEEADK----NSPSIIFIDELDAIAPKRE 196 (197)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~a~~----~~~~vl~lDeid~l~~~r~ 196 (197)
.-+.++.+++.++. ++..||||||||+|...+|
T Consensus 85 -------gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK~QQ 121 (436)
T COG2256 85 -------GVKDLREIIEEARKNRLLGRRTILFLDEIHRFNKAQQ 121 (436)
T ss_pred -------cHHHHHHHHHHHHHHHhcCCceEEEEehhhhcChhhh
Confidence 45677888887743 3458999999999987654
No 48
>KOG0744|consensus
Probab=99.52 E-value=1.1e-14 Score=116.51 Aligned_cols=112 Identities=25% Similarity=0.313 Sum_probs=83.2
Q ss_pred CcccccCcHHHHHHHHHHHHhcccChhhHhhh-CCCCCCceEEECCCCCcHHHHHHHHHHHhC---------CeEEEEec
Q psy6208 84 GYDDIGGCRKQLAQIKEMVELPLRHPSLFKAI-GVKPPRGILLYGPPGTGKTLIARAVANETG---------AFFFLING 153 (197)
Q Consensus 84 ~~~~i~g~~~~~~~l~~~v~~~~~~~~~~~~~-~~~~~~~ill~G~~GtGKT~la~ala~~~~---------~~~~~v~~ 153 (197)
-|++++--...++.+..++...+...+.--.- -+..++-||++||||||||+|++|+|+.+. ...+.+++
T Consensus 140 lWEsLiyds~lK~~ll~Ya~s~l~fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEins 219 (423)
T KOG0744|consen 140 LWESLIYDSNLKERLLSYAASALLFSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINS 219 (423)
T ss_pred hHHHHhhcccHHHHHHHHHHHHHHHHhcCCCCceeeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEeh
Confidence 36667777778888888776543322211100 023455689999999999999999999882 35789999
Q ss_pred hhhhhhccCccHHHHHHHHHHHhc-----CCCeEEEEcccCccCccc
Q psy6208 154 PEIMSKLAGESESNLRKAFEEADK-----NSPSIIFIDELDAIAPKR 195 (197)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~a~~-----~~~~vl~lDeid~l~~~r 195 (197)
..++++|++++.+.+..+|+.... +.--.++|||+++|+..|
T Consensus 220 hsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLIDEVESLa~aR 266 (423)
T KOG0744|consen 220 HSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLIDEVESLAAAR 266 (423)
T ss_pred hHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEeHHHHHHHHHH
Confidence 999999999999999988887643 223468899999998776
No 49
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.50 E-value=2.2e-14 Score=122.21 Aligned_cols=180 Identities=17% Similarity=0.237 Sum_probs=104.6
Q ss_pred ccCCCcchhhHHHHhHHHhhhcCcccccCCEEEEecCcceEEEEEEEecCCCeEEEcCceEEEEcCCCCcchhHHhhcCC
Q psy6208 3 LVPEGEMSNLFEVYLKPYFLEAYRPVHKDDLFIVRGGMRAVEFKIVDTDPAPYCIVAADTVIHCEGDPIKREEEEEASNA 82 (197)
Q Consensus 3 ~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (197)
+..+.....++|.|..+|+.++|.......+..+.+....+.|.+.. .+.+.. ....... ............+++.
T Consensus 32 ~~~~~~~l~~p~~f~~~~i~~~~~~~i~~~~~~~~~~~~~i~~~~~~-~~~~~~--~~~~~~~-~~~~~~~~~~~~l~~~ 107 (445)
T PRK12422 32 FDACNLYLEAKDSFQVTWFEEHIRHKVKASLVNNNGKPIRVHVTSLD-KSTPFK--KEKQIQQ-EKTAYFTMKYGELDPL 107 (445)
T ss_pred eeCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHHHhCCCceEEEEECC-CCCccc--cccccCc-ccccccccccCCCCcc
Confidence 34567788899999999999998777665555444444456664421 111100 0000000 0000000011345778
Q ss_pred CCccccc-CcHHHH--HHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHh---CCeEEEEechhh
Q psy6208 83 VGYDDIG-GCRKQL--AQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANET---GAFFFLINGPEI 156 (197)
Q Consensus 83 ~~~~~i~-g~~~~~--~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~---~~~~~~v~~~~~ 156 (197)
++|++++ |.+... ..+.++...+... .-....+++||||+|+|||||++++++++ +.+++++++.++
T Consensus 108 ~tFdnFv~g~~N~~a~~~a~~~a~~~~~~-------~~~~~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f 180 (445)
T PRK12422 108 MTFANFLVTPENDLPHRILQEFTKVSEQG-------KGFPFNPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELF 180 (445)
T ss_pred ccccceeeCCcHHHHHHHHHHHHhccccc-------cCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHH
Confidence 9999964 544332 3333333221000 00123579999999999999999999876 688999998877
Q ss_pred hhhccCccHHHHHHHHHHHhcCCCeEEEEcccCccCcc
Q psy6208 157 MSKLAGESESNLRKAFEEADKNSPSIIFIDELDAIAPK 194 (197)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~a~~~~~~vl~lDeid~l~~~ 194 (197)
...+...........|....+ .+++|+|||++.+.++
T Consensus 181 ~~~~~~~l~~~~~~~f~~~~~-~~dvLiIDDiq~l~~k 217 (445)
T PRK12422 181 TEHLVSAIRSGEMQRFRQFYR-NVDALFIEDIEVFSGK 217 (445)
T ss_pred HHHHHHHHhcchHHHHHHHcc-cCCEEEEcchhhhcCC
Confidence 655432222111223444433 4789999999998764
No 50
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.50 E-value=1.2e-13 Score=124.50 Aligned_cols=101 Identities=27% Similarity=0.412 Sum_probs=86.3
Q ss_pred CCCcccccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHh----------CCeEEEE
Q psy6208 82 AVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANET----------GAFFFLI 151 (197)
Q Consensus 82 ~~~~~~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~----------~~~~~~v 151 (197)
+-.+++++|.+..++++.+.+.. ....+++|+||||||||++++++|+.+ +..++.+
T Consensus 178 ~~~l~~~igr~~ei~~~~~~L~~-------------~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~ 244 (731)
T TIGR02639 178 NGKIDPLIGREDELERTIQVLCR-------------RKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSL 244 (731)
T ss_pred cCCCCcccCcHHHHHHHHHHHhc-------------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEe
Confidence 45778999999999988877654 346689999999999999999999987 6788999
Q ss_pred echhhh--hhccCccHHHHHHHHHHHhcCCCeEEEEcccCccCccc
Q psy6208 152 NGPEIM--SKLAGESESNLRKAFEEADKNSPSIIFIDELDAIAPKR 195 (197)
Q Consensus 152 ~~~~~~--~~~~~~~~~~~~~~~~~a~~~~~~vl~lDeid~l~~~r 195 (197)
++..+. ..+.|+.+..++.+++.+....++||||||+|.|.+.+
T Consensus 245 ~~~~l~a~~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g 290 (731)
T TIGR02639 245 DMGSLLAGTKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAG 290 (731)
T ss_pred cHHHHhhhccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccC
Confidence 988887 46778889999999999877778999999999998653
No 51
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=99.47 E-value=6.7e-14 Score=116.72 Aligned_cols=158 Identities=17% Similarity=0.250 Sum_probs=103.5
Q ss_pred ccCCCcchhhHHHHhHHHhhhcCcccccCCEEEEecCcceEEEEEEEecCCCeEEEcCceEEEEcCCCCcchhHHhhcCC
Q psy6208 3 LVPEGEMSNLFEVYLKPYFLEAYRPVHKDDLFIVRGGMRAVEFKIVDTDPAPYCIVAADTVIHCEGDPIKREEEEEASNA 82 (197)
Q Consensus 3 ~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (197)
...+.....++|.|.+.|++++ ..+....+....+ . +.+.+. ...+........+++.
T Consensus 26 ~~~~~~~i~~pn~f~~~~~~~~-~~~i~~~~~~~~~-~--~~~~~~------------------~~~~~q~~~~~~l~~~ 83 (408)
T COG0593 26 VEESVLVLYAPNEFVRNWLNSK-LDLIKELLQELDG-I--IKVEVR------------------ASAPAQLPLPSGLNPK 83 (408)
T ss_pred cccceEEEEeCcHHHHHHHHhh-HHHHHHHHHHhcC-C--cceeec------------------cccccccCccccCCCC
Confidence 3444667788999999999998 6555554444433 2 222211 0000000111345778
Q ss_pred CCccccc-CcHH-HHHHH-HHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHh-----CCeEEEEech
Q psy6208 83 VGYDDIG-GCRK-QLAQI-KEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANET-----GAFFFLINGP 154 (197)
Q Consensus 83 ~~~~~i~-g~~~-~~~~l-~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~-----~~~~~~v~~~ 154 (197)
++|++++ |.+. ....+ ..+...+ ....+.++|||++|+|||||++|+++.. +..+++++.+
T Consensus 84 ytFdnFv~g~~N~~A~aa~~~va~~~-----------g~~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se 152 (408)
T COG0593 84 YTFDNFVVGPSNRLAYAAAKAVAENP-----------GGAYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSE 152 (408)
T ss_pred CchhheeeCCchHHHHHHHHHHHhcc-----------CCcCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHH
Confidence 9999953 3332 22222 2222222 1245679999999999999999999887 4579999999
Q ss_pred hhhhhccCccHHHHHHHHHHHhcCCCeEEEEcccCccCccc
Q psy6208 155 EIMSKLAGESESNLRKAFEEADKNSPSIIFIDELDAIAPKR 195 (197)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~a~~~~~~vl~lDeid~l~~~r 195 (197)
.+...++.+....-..-|+..+ ..++++|||++.+.++.
T Consensus 153 ~f~~~~v~a~~~~~~~~Fk~~y--~~dlllIDDiq~l~gk~ 191 (408)
T COG0593 153 DFTNDFVKALRDNEMEKFKEKY--SLDLLLIDDIQFLAGKE 191 (408)
T ss_pred HHHHHHHHHHHhhhHHHHHHhh--ccCeeeechHhHhcCCh
Confidence 9988877666666666777777 57899999999999874
No 52
>KOG0743|consensus
Probab=99.46 E-value=3.6e-13 Score=112.13 Aligned_cols=106 Identities=25% Similarity=0.396 Sum_probs=89.0
Q ss_pred CCCcccccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhhhcc
Q psy6208 82 AVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLA 161 (197)
Q Consensus 82 ~~~~~~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~~~~~~~v~~~~~~~~~~ 161 (197)
+-+|+.++=..+.+++|.+-+..+.+...+|++.|....+|.|||||||||||+++.|+|+.++..++-++.++...
T Consensus 197 pstF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v~~--- 273 (457)
T KOG0743|consen 197 PSTFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEVKL--- 273 (457)
T ss_pred CCCccccccChhHHHHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcCCceEEeeeccccC---
Confidence 35778888889999999999999999999999999999999999999999999999999999999998887765522
Q ss_pred CccHHHHHHHHHHHhcCCCeEEEEcccCccCccc
Q psy6208 162 GESESNLRKAFEEADKNSPSIIFIDELDAIAPKR 195 (197)
Q Consensus 162 ~~~~~~~~~~~~~a~~~~~~vl~lDeid~l~~~r 195 (197)
...++.++.... ..+||+|+|||+-...|
T Consensus 274 ---n~dLr~LL~~t~--~kSIivIEDIDcs~~l~ 302 (457)
T KOG0743|consen 274 ---DSDLRHLLLATP--NKSILLIEDIDCSFDLR 302 (457)
T ss_pred ---cHHHHHHHHhCC--CCcEEEEeecccccccc
Confidence 223677766543 35799999999876543
No 53
>KOG0736|consensus
Probab=99.44 E-value=6.7e-12 Score=110.09 Aligned_cols=182 Identities=25% Similarity=0.377 Sum_probs=125.6
Q ss_pred hhhHHHHhHHHhhhcCcccccCCEEEEec------------------CcceEEEEEEEecCCC---eEEEcCceEEEEcC
Q psy6208 10 SNLFEVYLKPYFLEAYRPVHKDDLFIVRG------------------GMRAVEFKIVDTDPAP---YCIVAADTVIHCEG 68 (197)
Q Consensus 10 ~~~~~~f~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~v~~~~~~~---~~~~~~~~~~~~~~ 68 (197)
.+.....+..||. ..+.+..|+++.+.- .-..+.++|+..+|.. ..+....|.+...+
T Consensus 303 ~~~~~~~l~~~f~-t~ril~~gdvf~i~~~~~~~~~~~~~~l~l~~~~d~~v~~~v~~~ep~~~~~~~i~~~~T~lv~~~ 381 (953)
T KOG0736|consen 303 AGNIDVVLKKHFK-TPRILQSGDVFCIPINSQMANLNGYPELPLWRETDFLVYKKVIEAEPGNESAYIIDTNHTSLVLVG 381 (953)
T ss_pred hhHHHHHHHHHhC-cceeeecCCEEEEeehhhhcccccchhhHhhhhccceeEEEEeecCCCccceEEEcCCCceEEEcc
Confidence 6777788888988 478999999998854 2335677888876643 22233334443333
Q ss_pred CCCcchh--HHhhcCCCCcccccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHhCC
Q psy6208 69 DPIKREE--EEEASNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGA 146 (197)
Q Consensus 69 ~~~~~~~--~~~~~~~~~~~~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~~~ 146 (197)
....+.. -.....-.++-..-+.+..+.++...+.... .+. ..+......+||+|+||||||++++++|.+++.
T Consensus 382 ~~ss~~~~lps~~~~l~n~~~~~~~~~~~~~l~~vl~p~~-~~s---~~~~~~~~~vLLhG~~g~GK~t~V~~vas~lg~ 457 (953)
T KOG0736|consen 382 ATSSRVPLLPSSLSTLWNSLSPPGLEAKVLELVAVLSPQK-QPS---GALLTLNPSVLLHGPPGSGKTTVVRAVASELGL 457 (953)
T ss_pred ccccCCcCCChhhHHHhccCCCccchHHHHHHHHHhCccc-Ccc---hhccccceEEEEeCCCCCChHHHHHHHHHHhCC
Confidence 3222200 0111112233334455555555555443321 111 111234556999999999999999999999999
Q ss_pred eEEEEechhhhhhccCccHHHHHHHHHHHhcCCCeEEEEcccCccCcccC
Q psy6208 147 FFFLINGPEIMSKLAGESESNLRKAFEEADKNSPSIIFIDELDAIAPKRE 196 (197)
Q Consensus 147 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~vl~lDeid~l~~~r~ 196 (197)
+++.++|.++.....+..+..+...|.+++...|+|||+-++|.|..+++
T Consensus 458 h~~evdc~el~~~s~~~~etkl~~~f~~a~~~~pavifl~~~dvl~id~d 507 (953)
T KOG0736|consen 458 HLLEVDCYELVAESASHTETKLQAIFSRARRCSPAVLFLRNLDVLGIDQD 507 (953)
T ss_pred ceEeccHHHHhhcccchhHHHHHHHHHHHhhcCceEEEEeccceeeecCC
Confidence 99999999999999999999999999999999999999999999986654
No 54
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.43 E-value=7.3e-13 Score=120.87 Aligned_cols=101 Identities=25% Similarity=0.437 Sum_probs=85.8
Q ss_pred CCCcccccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHh----------CCeEEEE
Q psy6208 82 AVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANET----------GAFFFLI 151 (197)
Q Consensus 82 ~~~~~~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~----------~~~~~~v 151 (197)
.-.++.++|.++.++++.+.+.. ...++++|+||||+|||++++++|... +.+++.+
T Consensus 175 ~~~~~~~igr~~ei~~~~~~L~r-------------~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l 241 (821)
T CHL00095 175 DGNLDPVIGREKEIERVIQILGR-------------RTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITL 241 (821)
T ss_pred cCCCCCCCCcHHHHHHHHHHHcc-------------cccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEe
Confidence 34678899999999999998764 356689999999999999999999876 4688899
Q ss_pred echhhh--hhccCccHHHHHHHHHHHhcCCCeEEEEcccCccCccc
Q psy6208 152 NGPEIM--SKLAGESESNLRKAFEEADKNSPSIIFIDELDAIAPKR 195 (197)
Q Consensus 152 ~~~~~~--~~~~~~~~~~~~~~~~~a~~~~~~vl~lDeid~l~~~r 195 (197)
+...+. ..+.|+.+..++.+++.+....+.||||||+|.|.+.+
T Consensus 242 ~~~~l~ag~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g 287 (821)
T CHL00095 242 DIGLLLAGTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAG 287 (821)
T ss_pred eHHHHhccCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCC
Confidence 988776 45678888899999998877778999999999998754
No 55
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.42 E-value=3.3e-13 Score=115.37 Aligned_cols=175 Identities=13% Similarity=0.178 Sum_probs=96.8
Q ss_pred ccCCCcchhhHHHHhHHHhhhcCcccccCCEEEEecCcceEEEEEEEecCCCeEEEcCceEEEEcCCCCcchhHHhhcCC
Q psy6208 3 LVPEGEMSNLFEVYLKPYFLEAYRPVHKDDLFIVRGGMRAVEFKIVDTDPAPYCIVAADTVIHCEGDPIKREEEEEASNA 82 (197)
Q Consensus 3 ~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (197)
+..+.....++|.|...|+.+ |.......+..+.+....+.|.+.. .+...... ... ......+........++ .
T Consensus 37 ~~~~~l~l~~p~~f~~~~~~~-~~~~i~~~~~~~~~~~~~i~~~~~~-~~~~~~~~-~~~-~~~~~~~~~~~~~~~l~-~ 111 (450)
T PRK14087 37 KSNSEYVVVVKSQFGLLAIKQ-FRETIVNEIKSILKSPVNISFTYEQ-EYEKQLEK-EEL-IKKDHSDIILKKNKKIN-E 111 (450)
T ss_pred eeCCEEEEEeCCHHHHHHHHH-HHHHHHHHHHHHhCCCceEEEEeCC-Cccccccc-ccc-ccccccccccccccCcc-c
Confidence 355677888999999999966 7665554444443444455554311 11100000 000 00000000000012233 5
Q ss_pred CCccccc-CcHH--HHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHh-----CCeEEEEech
Q psy6208 83 VGYDDIG-GCRK--QLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANET-----GAFFFLINGP 154 (197)
Q Consensus 83 ~~~~~i~-g~~~--~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~-----~~~~~~v~~~ 154 (197)
++|++++ |.+. +...+..+...+ + ....+++|||++|+|||||++++++++ +..++++++.
T Consensus 112 ~tFdnFv~g~~n~~A~~aa~~~a~~~----------~-~~~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~ 180 (450)
T PRK14087 112 NTFENFVIGSSNEQAFIAVQTVSKNP----------G-ISYNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGD 180 (450)
T ss_pred cchhcccCCCcHHHHHHHHHHHHhCc----------C-cccCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHH
Confidence 7899854 4433 233333332211 1 123579999999999999999999864 5789999999
Q ss_pred hhhhhccCccHH--HHHHHHHHHhcCCCeEEEEcccCccCcc
Q psy6208 155 EIMSKLAGESES--NLRKAFEEADKNSPSIIFIDELDAIAPK 194 (197)
Q Consensus 155 ~~~~~~~~~~~~--~~~~~~~~a~~~~~~vl~lDeid~l~~~ 194 (197)
++...+...... .....|....+ .+++|+|||++.+..+
T Consensus 181 ~f~~~~~~~l~~~~~~~~~~~~~~~-~~dvLiIDDiq~l~~k 221 (450)
T PRK14087 181 EFARKAVDILQKTHKEIEQFKNEIC-QNDVLIIDDVQFLSYK 221 (450)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHhc-cCCEEEEeccccccCC
Confidence 887766533222 11112222222 4789999999999865
No 56
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.42 E-value=5.9e-13 Score=109.74 Aligned_cols=99 Identities=28% Similarity=0.503 Sum_probs=73.3
Q ss_pred cCCCCcccccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhhh
Q psy6208 80 SNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSK 159 (197)
Q Consensus 80 ~~~~~~~~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~~~~~~~v~~~~~~~~ 159 (197)
..+.+|++++|+++.++++..++...... -.+..+++|+||||+|||++|+++|++++..+..++++.+.
T Consensus 19 ~rP~~~~~~vG~~~~~~~l~~~l~~~~~~--------~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~-- 88 (328)
T PRK00080 19 LRPKSLDEFIGQEKVKENLKIFIEAAKKR--------GEALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALE-- 88 (328)
T ss_pred cCcCCHHHhcCcHHHHHHHHHHHHHHHhc--------CCCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEeccccc--
Confidence 34568999999999999998888643111 13456899999999999999999999999888777655331
Q ss_pred ccCccHHHHHHHHHHHhcCCCeEEEEcccCccCcc
Q psy6208 160 LAGESESNLRKAFEEADKNSPSIIFIDELDAIAPK 194 (197)
Q Consensus 160 ~~~~~~~~~~~~~~~a~~~~~~vl~lDeid~l~~~ 194 (197)
....+..++... ..+++|||||+|.+.+.
T Consensus 89 ----~~~~l~~~l~~l--~~~~vl~IDEi~~l~~~ 117 (328)
T PRK00080 89 ----KPGDLAAILTNL--EEGDVLFIDEIHRLSPV 117 (328)
T ss_pred ----ChHHHHHHHHhc--ccCCEEEEecHhhcchH
Confidence 122344444443 34689999999998754
No 57
>PRK04195 replication factor C large subunit; Provisional
Probab=99.42 E-value=1.2e-12 Score=113.05 Aligned_cols=102 Identities=32% Similarity=0.504 Sum_probs=76.7
Q ss_pred hhcCCCCcccccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhh
Q psy6208 78 EASNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIM 157 (197)
Q Consensus 78 ~~~~~~~~~~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~~~~~~~v~~~~~~ 157 (197)
+...+-++++++|++..++++..++...... .++.++||+||||+|||++|+++|++++..++.+++++..
T Consensus 6 eKyrP~~l~dlvg~~~~~~~l~~~l~~~~~g---------~~~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd~r 76 (482)
T PRK04195 6 EKYRPKTLSDVVGNEKAKEQLREWIESWLKG---------KPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQR 76 (482)
T ss_pred hhcCCCCHHHhcCCHHHHHHHHHHHHHHhcC---------CCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEcccccc
Confidence 4466788999999999999999998754211 2367899999999999999999999999999999987642
Q ss_pred hhccCccHHHHHHHHHHHhc------CCCeEEEEcccCccCcc
Q psy6208 158 SKLAGESESNLRKAFEEADK------NSPSIIFIDELDAIAPK 194 (197)
Q Consensus 158 ~~~~~~~~~~~~~~~~~a~~------~~~~vl~lDeid~l~~~ 194 (197)
. ...+......+.. ..+.+|+|||+|.|..+
T Consensus 77 ~------~~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~ 113 (482)
T PRK04195 77 T------ADVIERVAGEAATSGSLFGARRKLILLDEVDGIHGN 113 (482)
T ss_pred c------HHHHHHHHHHhhccCcccCCCCeEEEEecCcccccc
Confidence 1 1222222222211 24679999999999763
No 58
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.42 E-value=8e-13 Score=111.52 Aligned_cols=108 Identities=27% Similarity=0.326 Sum_probs=75.5
Q ss_pred cccCcHHHHHHHHHHHHhcccChhhHhh---hCCCCCCceEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhh-hccC
Q psy6208 87 DIGGCRKQLAQIKEMVELPLRHPSLFKA---IGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMS-KLAG 162 (197)
Q Consensus 87 ~i~g~~~~~~~l~~~v~~~~~~~~~~~~---~~~~~~~~ill~G~~GtGKT~la~ala~~~~~~~~~v~~~~~~~-~~~~ 162 (197)
.|+|++.+++.+...+..+......... -......++||+||||||||++|+++|..++.+++.+++..+.. .|.|
T Consensus 72 ~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~l~~~gyvG 151 (412)
T PRK05342 72 YVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVPFAIADATTLTEAGYVG 151 (412)
T ss_pred HeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCceecchhhcccCCccc
Confidence 3899999999997777543222111000 00124578999999999999999999999999999999987753 4555
Q ss_pred ccH-HHHHHHHHHH----hcCCCeEEEEcccCccCcc
Q psy6208 163 ESE-SNLRKAFEEA----DKNSPSIIFIDELDAIAPK 194 (197)
Q Consensus 163 ~~~-~~~~~~~~~a----~~~~~~vl~lDeid~l~~~ 194 (197)
... ..+..++..+ ....++||||||||.++++
T Consensus 152 ~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~ 188 (412)
T PRK05342 152 EDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARK 188 (412)
T ss_pred chHHHHHHHHHHhccccHHHcCCcEEEEechhhhccc
Confidence 533 3334443321 2345789999999999875
No 59
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.41 E-value=9e-13 Score=102.70 Aligned_cols=103 Identities=26% Similarity=0.444 Sum_probs=66.7
Q ss_pred cCCCCccccc-C--cHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHh-----CCeEEEE
Q psy6208 80 SNAVGYDDIG-G--CRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANET-----GAFFFLI 151 (197)
Q Consensus 80 ~~~~~~~~i~-g--~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~-----~~~~~~v 151 (197)
++.++|++++ | +..+...+......+ -.....++||||+|+|||||++|++++. +..++++
T Consensus 2 n~~~tFdnfv~g~~N~~a~~~~~~ia~~~-----------~~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~ 70 (219)
T PF00308_consen 2 NPKYTFDNFVVGESNELAYAAAKAIAENP-----------GERYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYL 70 (219)
T ss_dssp -TT-SCCCS--TTTTHHHHHHHHHHHHST-----------TTSSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEE
T ss_pred CCCCccccCCcCCcHHHHHHHHHHHHhcC-----------CCCCCceEEECCCCCCHHHHHHHHHHHHHhccccccceee
Confidence 5789999963 4 334444444443332 1223469999999999999999998874 6789999
Q ss_pred echhhhhhccCccHHHHHHHHHHHhcCCCeEEEEcccCccCcc
Q psy6208 152 NGPEIMSKLAGESESNLRKAFEEADKNSPSIIFIDELDAIAPK 194 (197)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~vl~lDeid~l~~~ 194 (197)
++.++...+...........|....+ ..++|+|||++.+..+
T Consensus 71 ~~~~f~~~~~~~~~~~~~~~~~~~~~-~~DlL~iDDi~~l~~~ 112 (219)
T PF00308_consen 71 SAEEFIREFADALRDGEIEEFKDRLR-SADLLIIDDIQFLAGK 112 (219)
T ss_dssp EHHHHHHHHHHHHHTTSHHHHHHHHC-TSSEEEEETGGGGTTH
T ss_pred cHHHHHHHHHHHHHcccchhhhhhhh-cCCEEEEecchhhcCc
Confidence 99888766543322221222333333 4689999999999875
No 60
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.41 E-value=8.9e-13 Score=107.45 Aligned_cols=95 Identities=28% Similarity=0.501 Sum_probs=68.5
Q ss_pred CcccccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhhhccCc
Q psy6208 84 GYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGE 163 (197)
Q Consensus 84 ~~~~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~~~~~~~v~~~~~~~~~~~~ 163 (197)
+|++++|+++.++++..++...... -..+.+++|+||||+|||++|+++|++++..+..+.++...
T Consensus 2 ~~~~~iG~~~~~~~l~~~l~~~~~~--------~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~------ 67 (305)
T TIGR00635 2 LLAEFIGQEKVKEQLQLFIEAAKMR--------QEALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALE------ 67 (305)
T ss_pred CHHHHcCHHHHHHHHHHHHHHHHhc--------CCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhc------
Confidence 6889999999999999888643211 13356799999999999999999999998877666544321
Q ss_pred cHHHHHHHHHHHhcCCCeEEEEcccCccCcc
Q psy6208 164 SESNLRKAFEEADKNSPSIIFIDELDAIAPK 194 (197)
Q Consensus 164 ~~~~~~~~~~~a~~~~~~vl~lDeid~l~~~ 194 (197)
....+...+... ..+++|||||+|.+.++
T Consensus 68 ~~~~l~~~l~~~--~~~~vl~iDEi~~l~~~ 96 (305)
T TIGR00635 68 KPGDLAAILTNL--EEGDVLFIDEIHRLSPA 96 (305)
T ss_pred CchhHHHHHHhc--ccCCEEEEehHhhhCHH
Confidence 112233333332 34679999999998764
No 61
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=99.39 E-value=2.6e-13 Score=115.32 Aligned_cols=102 Identities=29% Similarity=0.433 Sum_probs=81.8
Q ss_pred hcCCCCcccccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHh---CCeEEEEechh
Q psy6208 79 ASNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANET---GAFFFLINGPE 155 (197)
Q Consensus 79 ~~~~~~~~~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~---~~~~~~v~~~~ 155 (197)
....++|++|+|.+..+.++.+.+... +..+.+|||.|++||||..+|++||+.+ +.||+.+||..
T Consensus 238 ~~a~y~f~~Iig~S~~m~~~~~~akr~-----------A~tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaA 306 (560)
T COG3829 238 LKAKYTFDDIIGESPAMLRVLELAKRI-----------AKTDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAA 306 (560)
T ss_pred cccccchhhhccCCHHHHHHHHHHHhh-----------cCCCCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEeccc
Confidence 445789999999999999999888764 5678899999999999999999999988 56999999987
Q ss_pred hhhh-----c--------cCccHHHHHHHHHHHhcCCCeEEEEcccCccCcc
Q psy6208 156 IMSK-----L--------AGESESNLRKAFEEADKNSPSIIFIDELDAIAPK 194 (197)
Q Consensus 156 ~~~~-----~--------~~~~~~~~~~~~~~a~~~~~~vl~lDeid~l~~~ 194 (197)
+... + .|+......+.|+.|..+ .||||||..|+..
T Consensus 307 iPe~LlESELFGye~GAFTGA~~~GK~GlfE~A~gG---TLFLDEIgempl~ 355 (560)
T COG3829 307 IPETLLESELFGYEKGAFTGASKGGKPGLFELANGG---TLFLDEIGEMPLP 355 (560)
T ss_pred CCHHHHHHHHhCcCCccccccccCCCCcceeeccCC---eEEehhhccCCHH
Confidence 7533 2 233333355677777666 5999999998753
No 62
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.38 E-value=1.6e-12 Score=117.99 Aligned_cols=100 Identities=22% Similarity=0.356 Sum_probs=75.3
Q ss_pred cccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhh---------
Q psy6208 87 DIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIM--------- 157 (197)
Q Consensus 87 ~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~~~~~~~v~~~~~~--------- 157 (197)
++.|++.+++.+.+++....... ......++|+||||||||++|+++|+.++.+++.+++..+.
T Consensus 321 ~~~G~~~~k~~i~~~~~~~~~~~-------~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~~ 393 (775)
T TIGR00763 321 DHYGLKKVKERILEYLAVQKLRG-------KMKGPILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGHR 393 (775)
T ss_pred hcCChHHHHHHHHHHHHHHHhhc-------CCCCceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCCC
Confidence 58899999999998876432111 12344699999999999999999999999999988764332
Q ss_pred hhccCccHHHHHHHHHHHhcCCCeEEEEcccCccCcc
Q psy6208 158 SKLAGESESNLRKAFEEADKNSPSIIFIDELDAIAPK 194 (197)
Q Consensus 158 ~~~~~~~~~~~~~~~~~a~~~~~~vl~lDeid~l~~~ 194 (197)
..+.+.....+.+.|..+....| ||||||||.+.+.
T Consensus 394 ~~~~g~~~g~i~~~l~~~~~~~~-villDEidk~~~~ 429 (775)
T TIGR00763 394 RTYVGAMPGRIIQGLKKAKTKNP-LFLLDEIDKIGSS 429 (775)
T ss_pred CceeCCCCchHHHHHHHhCcCCC-EEEEechhhcCCc
Confidence 23455555666677777765544 8999999999874
No 63
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.37 E-value=3.1e-12 Score=116.99 Aligned_cols=101 Identities=24% Similarity=0.408 Sum_probs=82.7
Q ss_pred CCCcccccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHh----------CCeEEEE
Q psy6208 82 AVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANET----------GAFFFLI 151 (197)
Q Consensus 82 ~~~~~~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~----------~~~~~~v 151 (197)
+-.++.++|.+..++++.+.+.. ....+++|+||||+|||++++++|... +.+++.+
T Consensus 174 ~~~l~~vigr~~ei~~~i~iL~r-------------~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l 240 (857)
T PRK10865 174 QGKLDPVIGRDEEIRRTIQVLQR-------------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLAL 240 (857)
T ss_pred cCCCCcCCCCHHHHHHHHHHHhc-------------CCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEE
Confidence 45678899999998888877754 345689999999999999999999987 6788888
Q ss_pred echhhh--hhccCccHHHHHHHHHHHhc-CCCeEEEEcccCccCccc
Q psy6208 152 NGPEIM--SKLAGESESNLRKAFEEADK-NSPSIIFIDELDAIAPKR 195 (197)
Q Consensus 152 ~~~~~~--~~~~~~~~~~~~~~~~~a~~-~~~~vl~lDeid~l~~~r 195 (197)
+...+. ..+.|+.+..++.+|+.... ..++||||||+|.|.+.+
T Consensus 241 ~l~~l~ag~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~ 287 (857)
T PRK10865 241 DMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAG 287 (857)
T ss_pred ehhhhhhccchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCC
Confidence 887765 34667788889999987543 568999999999998653
No 64
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.37 E-value=1.6e-12 Score=110.29 Aligned_cols=95 Identities=32% Similarity=0.516 Sum_probs=71.8
Q ss_pred cCCCCcccccCcHHHHHH---HHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHhCCeEEEEechhh
Q psy6208 80 SNAVGYDDIGGCRKQLAQ---IKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEI 156 (197)
Q Consensus 80 ~~~~~~~~i~g~~~~~~~---l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~~~~~~~v~~~~~ 156 (197)
..+-++++++|++..+.. +.+++.. ....+++|+||||||||++|+++++..+..++.+++...
T Consensus 6 ~RP~~l~d~vGq~~~v~~~~~L~~~i~~-------------~~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~~ 72 (413)
T PRK13342 6 MRPKTLDEVVGQEHLLGPGKPLRRMIEA-------------GRLSSMILWGPPGTGKTTLARIIAGATDAPFEALSAVTS 72 (413)
T ss_pred hCCCCHHHhcCcHHHhCcchHHHHHHHc-------------CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEecccc
Confidence 446789999999998766 7777653 334579999999999999999999999999999887532
Q ss_pred hhhccCccHHHHHHHHHHHh----cCCCeEEEEcccCccCcc
Q psy6208 157 MSKLAGESESNLRKAFEEAD----KNSPSIIFIDELDAIAPK 194 (197)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~a~----~~~~~vl~lDeid~l~~~ 194 (197)
....++.+++.+. .+...+|||||+|.+...
T Consensus 73 -------~~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~~~ 107 (413)
T PRK13342 73 -------GVKDLREVIEEARQRRSAGRRTILFIDEIHRFNKA 107 (413)
T ss_pred -------cHHHHHHHHHHHHHhhhcCCceEEEEechhhhCHH
Confidence 2233444444442 235689999999998653
No 65
>PLN03025 replication factor C subunit; Provisional
Probab=99.36 E-value=3.1e-12 Score=105.10 Aligned_cols=98 Identities=23% Similarity=0.327 Sum_probs=68.4
Q ss_pred hhcCCCCcccccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHhC-----CeEEEEe
Q psy6208 78 EASNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANETG-----AFFFLIN 152 (197)
Q Consensus 78 ~~~~~~~~~~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~~-----~~~~~v~ 152 (197)
+...+-+++++.|++.++..|+.++.. ...++++|+||||+|||++|+++|+++. ..++.++
T Consensus 5 ~kyrP~~l~~~~g~~~~~~~L~~~~~~-------------~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln 71 (319)
T PLN03025 5 EKYRPTKLDDIVGNEDAVSRLQVIARD-------------GNMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELN 71 (319)
T ss_pred hhcCCCCHHHhcCcHHHHHHHHHHHhc-------------CCCceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeec
Confidence 456678999999999999999887653 2334699999999999999999999872 2355566
Q ss_pred chhhhhhccCccHHHHHHHHHHH---h----cCCCeEEEEcccCccCcc
Q psy6208 153 GPEIMSKLAGESESNLRKAFEEA---D----KNSPSIIFIDELDAIAPK 194 (197)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~a---~----~~~~~vl~lDeid~l~~~ 194 (197)
+++..+ ...++...+.. . .+.+.+++|||+|.|...
T Consensus 72 ~sd~~~------~~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt~~ 114 (319)
T PLN03025 72 ASDDRG------IDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTSG 114 (319)
T ss_pred cccccc------HHHHHHHHHHHHhccccCCCCCeEEEEEechhhcCHH
Confidence 543311 11222222211 1 134679999999999764
No 66
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=99.34 E-value=5.6e-12 Score=94.27 Aligned_cols=94 Identities=26% Similarity=0.481 Sum_probs=66.3
Q ss_pred ccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHh---CCeEEEEechhhhhh-----
Q psy6208 88 IGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANET---GAFFFLINGPEIMSK----- 159 (197)
Q Consensus 88 i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~---~~~~~~v~~~~~~~~----- 159 (197)
|+|.+..++++.+.+... +..+.+|||+|++||||+.+|++|++.. +.+|+.++|+.+..+
T Consensus 1 liG~s~~m~~~~~~~~~~-----------a~~~~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~~~~e~~ 69 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRA-----------ASSDLPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPEELLESE 69 (168)
T ss_dssp SS--SHHHHHHHHHHHHH-----------TTSTS-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-HHHHHHH
T ss_pred CEeCCHHHHHHHHHHHHH-----------hCCCCCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhcchhhhh
Confidence 568888888888888765 3556789999999999999999999976 469999999876433
Q ss_pred ccCccH-------HHHHHHHHHHhcCCCeEEEEcccCccCccc
Q psy6208 160 LAGESE-------SNLRKAFEEADKNSPSIIFIDELDAIAPKR 195 (197)
Q Consensus 160 ~~~~~~-------~~~~~~~~~a~~~~~~vl~lDeid~l~~~r 195 (197)
++|... .....+++.|..+ +||||||+.|++.-
T Consensus 70 LFG~~~~~~~~~~~~~~G~l~~A~~G---tL~Ld~I~~L~~~~ 109 (168)
T PF00158_consen 70 LFGHEKGAFTGARSDKKGLLEQANGG---TLFLDEIEDLPPEL 109 (168)
T ss_dssp HHEBCSSSSTTTSSEBEHHHHHTTTS---EEEEETGGGS-HHH
T ss_pred hhccccccccccccccCCceeeccce---EEeecchhhhHHHH
Confidence 222211 1123567777665 79999999998753
No 67
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.33 E-value=6.5e-12 Score=105.74 Aligned_cols=108 Identities=31% Similarity=0.420 Sum_probs=74.3
Q ss_pred cccCcHHHHHHHHHHHHhcccChhhH--hh--hCC-CCCCceEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhh-hc
Q psy6208 87 DIGGCRKQLAQIKEMVELPLRHPSLF--KA--IGV-KPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMS-KL 160 (197)
Q Consensus 87 ~i~g~~~~~~~l~~~v~~~~~~~~~~--~~--~~~-~~~~~ill~G~~GtGKT~la~ala~~~~~~~~~v~~~~~~~-~~ 160 (197)
.++|++.+++.+...+.......... .. .++ ....++||+||||+|||++|+++|..++.++..+++..+.. .|
T Consensus 78 ~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da~~L~~~gy 157 (413)
T TIGR00382 78 YVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNVPFAIADATTLTEAGY 157 (413)
T ss_pred eecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCCCeEEechhhcccccc
Confidence 37999999999987774332221110 00 000 12467999999999999999999999999999999887642 45
Q ss_pred cCcc-HHHHHHHHHHH----hcCCCeEEEEcccCccCcc
Q psy6208 161 AGES-ESNLRKAFEEA----DKNSPSIIFIDELDAIAPK 194 (197)
Q Consensus 161 ~~~~-~~~~~~~~~~a----~~~~~~vl~lDeid~l~~~ 194 (197)
.|.. +..+..++..+ ....+++|||||+|.+.++
T Consensus 158 vG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~ 196 (413)
T TIGR00382 158 VGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRK 196 (413)
T ss_pred ccccHHHHHHHHHHhCcccHHhcccceEEecccchhchh
Confidence 6653 33344444322 2235679999999999875
No 68
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.32 E-value=6.7e-12 Score=109.58 Aligned_cols=107 Identities=18% Similarity=0.343 Sum_probs=72.2
Q ss_pred HhhcCCCCccccc-CcHHH--HHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHh-----CCeE
Q psy6208 77 EEASNAVGYDDIG-GCRKQ--LAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANET-----GAFF 148 (197)
Q Consensus 77 ~~~~~~~~~~~i~-g~~~~--~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~-----~~~~ 148 (197)
..+++.++|++++ |.+.. ...+...+..+ + ...+.++|||++|+|||||++++++++ +..+
T Consensus 279 a~L~~~~TFDnFvvG~sN~~A~aaa~avae~~----------~-~~~NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V 347 (617)
T PRK14086 279 ARLNPKYTFDTFVIGASNRFAHAAAVAVAEAP----------A-KAYNPLFIYGESGLGKTHLLHAIGHYARRLYPGTRV 347 (617)
T ss_pred CCCCCCCCHhhhcCCCccHHHHHHHHHHHhCc----------c-ccCCcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeE
Confidence 3466788999964 44332 22333333221 1 123459999999999999999999976 5689
Q ss_pred EEEechhhhhhccCccHHHHHHHHHHHhcCCCeEEEEcccCccCccc
Q psy6208 149 FLINGPEIMSKLAGESESNLRKAFEEADKNSPSIIFIDELDAIAPKR 195 (197)
Q Consensus 149 ~~v~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~vl~lDeid~l~~~r 195 (197)
+++++.++...+...........|..... .+++|+||||+.+..+.
T Consensus 348 ~Yitaeef~~el~~al~~~~~~~f~~~y~-~~DLLlIDDIq~l~gke 393 (617)
T PRK14086 348 RYVSSEEFTNEFINSIRDGKGDSFRRRYR-EMDILLVDDIQFLEDKE 393 (617)
T ss_pred EEeeHHHHHHHHHHHHHhccHHHHHHHhh-cCCEEEEehhccccCCH
Confidence 99999988877654433333334554444 47999999999998754
No 69
>KOG2028|consensus
Probab=99.32 E-value=3.5e-12 Score=103.93 Aligned_cols=96 Identities=28% Similarity=0.558 Sum_probs=67.2
Q ss_pred CCCCcccccCcHHHHHH---HHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHhCCe---EEEEech
Q psy6208 81 NAVGYDDIGGCRKQLAQ---IKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAF---FFLINGP 154 (197)
Q Consensus 81 ~~~~~~~i~g~~~~~~~---l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~~~~---~~~v~~~ 154 (197)
.+-+++|.+|++....+ |+.+++. ..-+.++||||||||||+||+.|+.....+ |+.+++.
T Consensus 133 RPktL~dyvGQ~hlv~q~gllrs~ieq-------------~~ipSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt 199 (554)
T KOG2028|consen 133 RPKTLDDYVGQSHLVGQDGLLRSLIEQ-------------NRIPSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSAT 199 (554)
T ss_pred CcchHHHhcchhhhcCcchHHHHHHHc-------------CCCCceEEecCCCCchHHHHHHHHhhcCCCceEEEEEecc
Confidence 34567777777776655 2233322 345579999999999999999999887443 5555442
Q ss_pred hhhhhccCccHHHHHHHHHHHhc-----CCCeEEEEcccCccCcccC
Q psy6208 155 EIMSKLAGESESNLRKAFEEADK-----NSPSIIFIDELDAIAPKRE 196 (197)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~a~~-----~~~~vl~lDeid~l~~~r~ 196 (197)
. ...+.++.+|+.+.+ .+..||||||||++....|
T Consensus 200 ~-------a~t~dvR~ife~aq~~~~l~krkTilFiDEiHRFNksQQ 239 (554)
T KOG2028|consen 200 N-------AKTNDVRDIFEQAQNEKSLTKRKTILFIDEIHRFNKSQQ 239 (554)
T ss_pred c-------cchHHHHHHHHHHHHHHhhhcceeEEEeHHhhhhhhhhh
Confidence 2 244577888887754 4568999999999876654
No 70
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.31 E-value=9e-12 Score=112.10 Aligned_cols=100 Identities=25% Similarity=0.411 Sum_probs=79.5
Q ss_pred CCcccccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHh----------CCeEEEEe
Q psy6208 83 VGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANET----------GAFFFLIN 152 (197)
Q Consensus 83 ~~~~~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~----------~~~~~~v~ 152 (197)
-.++.++|.+..++++.+.+.. ....+++|+||||||||+++++++... ++.++.++
T Consensus 183 g~~~~liGR~~ei~~~i~iL~r-------------~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~ 249 (758)
T PRK11034 183 GGIDPLIGREKELERAIQVLCR-------------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLD 249 (758)
T ss_pred CCCCcCcCCCHHHHHHHHHHhc-------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEecc
Confidence 4567899999999999887764 245678999999999999999999864 45566666
Q ss_pred chhhh--hhccCccHHHHHHHHHHHhcCCCeEEEEcccCccCccc
Q psy6208 153 GPEIM--SKLAGESESNLRKAFEEADKNSPSIIFIDELDAIAPKR 195 (197)
Q Consensus 153 ~~~~~--~~~~~~~~~~~~~~~~~a~~~~~~vl~lDeid~l~~~r 195 (197)
...+. ..+.|+.+..++.++..+....++||||||+|.|.+.+
T Consensus 250 ~~~llaG~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g 294 (758)
T PRK11034 250 IGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAG 294 (758)
T ss_pred HHHHhcccchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccC
Confidence 55554 34567778888889888877778999999999997654
No 71
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.30 E-value=1.5e-11 Score=112.77 Aligned_cols=100 Identities=24% Similarity=0.412 Sum_probs=81.2
Q ss_pred CCCcccccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHh----------CCeEEEE
Q psy6208 82 AVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANET----------GAFFFLI 151 (197)
Q Consensus 82 ~~~~~~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~----------~~~~~~v 151 (197)
+-.++.++|.+..++++.+.+.. ....+++|+||||+|||+++++++... +.+++.+
T Consensus 169 ~~~~~~~igr~~ei~~~~~~l~r-------------~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l 235 (852)
T TIGR03346 169 EGKLDPVIGRDEEIRRTIQVLSR-------------RTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLAL 235 (852)
T ss_pred CCCCCcCCCcHHHHHHHHHHHhc-------------CCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEe
Confidence 44678899999998888887654 345688999999999999999999875 6678888
Q ss_pred echhhh--hhccCccHHHHHHHHHHHhc-CCCeEEEEcccCccCcc
Q psy6208 152 NGPEIM--SKLAGESESNLRKAFEEADK-NSPSIIFIDELDAIAPK 194 (197)
Q Consensus 152 ~~~~~~--~~~~~~~~~~~~~~~~~a~~-~~~~vl~lDeid~l~~~ 194 (197)
+...+. ..+.++.+..+..+++.+.. ..+.||||||+|.|.+.
T Consensus 236 ~~~~l~a~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~ 281 (852)
T TIGR03346 236 DMGALIAGAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGA 281 (852)
T ss_pred eHHHHhhcchhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcC
Confidence 877765 45667788888999988754 35899999999999863
No 72
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.30 E-value=8.2e-12 Score=106.39 Aligned_cols=104 Identities=18% Similarity=0.246 Sum_probs=68.8
Q ss_pred hhcCCCCcccccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHhCCeEE----E---
Q psy6208 78 EASNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFF----L--- 150 (197)
Q Consensus 78 ~~~~~~~~~~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~~~~~~----~--- 150 (197)
....+.+|++++|++.+++.|..++... ..+..+||+||+|+|||++|+.+|+.+++.-. .
T Consensus 10 ~KyRP~~f~dvVGQe~iv~~L~~~i~~~------------ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~ 77 (484)
T PRK14956 10 RKYRPQFFRDVIHQDLAIGALQNALKSG------------KIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNE 77 (484)
T ss_pred HHhCCCCHHHHhChHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCC
Confidence 4566789999999999999999988642 23456899999999999999999999865310 0
Q ss_pred -Eechhhhhh-------c---cCccHHHHHHHHHHHh----cCCCeEEEEcccCccCc
Q psy6208 151 -INGPEIMSK-------L---AGESESNLRKAFEEAD----KNSPSIIFIDELDAIAP 193 (197)
Q Consensus 151 -v~~~~~~~~-------~---~~~~~~~~~~~~~~a~----~~~~~vl~lDeid~l~~ 193 (197)
-+|..+... + ....-..++.+.+.+. .+...|+||||+|.|..
T Consensus 78 C~sC~~i~~g~~~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~ 135 (484)
T PRK14956 78 CTSCLEITKGISSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTD 135 (484)
T ss_pred CcHHHHHHccCCccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCH
Confidence 011111100 0 0011223444443332 34567999999999875
No 73
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.30 E-value=1e-11 Score=101.75 Aligned_cols=101 Identities=26% Similarity=0.351 Sum_probs=71.9
Q ss_pred HhhcCCCCcccccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHhCCeEEEEechhh
Q psy6208 77 EEASNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEI 156 (197)
Q Consensus 77 ~~~~~~~~~~~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~~~~~~~v~~~~~ 156 (197)
.+...+.+++++.|++...+.+..++... ..+..++|+||||+|||+++++++++.+.+++++++.+
T Consensus 12 ~~kyrP~~~~~~~~~~~~~~~l~~~~~~~------------~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~~- 78 (316)
T PHA02544 12 EQKYRPSTIDECILPAADKETFKSIVKKG------------RIPNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGSD- 78 (316)
T ss_pred eeccCCCcHHHhcCcHHHHHHHHHHHhcC------------CCCeEEEeeCcCCCCHHHHHHHHHHHhCccceEeccCc-
Confidence 34566789999999999999999888631 33455677999999999999999999998999998876
Q ss_pred hhhccCccHHHHHHHHHHH-hcCCCeEEEEcccCccC
Q psy6208 157 MSKLAGESESNLRKAFEEA-DKNSPSIIFIDELDAIA 192 (197)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~a-~~~~~~vl~lDeid~l~ 192 (197)
. . .......+....... ....+.+|+|||+|.+.
T Consensus 79 ~-~-~~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~ 113 (316)
T PHA02544 79 C-R-IDFVRNRLTRFASTVSLTGGGKVIIIDEFDRLG 113 (316)
T ss_pred c-c-HHHHHHHHHHHHHhhcccCCCeEEEEECccccc
Confidence 1 1 111111122211111 11357899999999883
No 74
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.29 E-value=2.1e-11 Score=87.54 Aligned_cols=90 Identities=43% Similarity=0.806 Sum_probs=61.0
Q ss_pred CcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHh---CCeEEEEechhhhhhccCccHH
Q psy6208 90 GCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANET---GAFFFLINGPEIMSKLAGESES 166 (197)
Q Consensus 90 g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~---~~~~~~v~~~~~~~~~~~~~~~ 166 (197)
|.+....++...+.. ....+++|+||||+|||++++.+++.+ +.+++++++.+...........
T Consensus 2 ~~~~~~~~i~~~~~~-------------~~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 68 (151)
T cd00009 2 GQEEAIEALREALEL-------------PPPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELF 68 (151)
T ss_pred chHHHHHHHHHHHhC-------------CCCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHh
Confidence 445556666555532 245679999999999999999999998 8889999987765443211111
Q ss_pred H---HHHHHHHHhcCCCeEEEEcccCccC
Q psy6208 167 N---LRKAFEEADKNSPSIIFIDELDAIA 192 (197)
Q Consensus 167 ~---~~~~~~~a~~~~~~vl~lDeid~l~ 192 (197)
. ............+.+|++||++.+.
T Consensus 69 ~~~~~~~~~~~~~~~~~~~lilDe~~~~~ 97 (151)
T cd00009 69 GHFLVRLLFELAEKAKPGVLFIDEIDSLS 97 (151)
T ss_pred hhhhHhHHHHhhccCCCeEEEEeChhhhh
Confidence 1 1112233344568899999999873
No 75
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.29 E-value=1.7e-11 Score=105.25 Aligned_cols=98 Identities=17% Similarity=0.268 Sum_probs=68.2
Q ss_pred hhcCCCCcccccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHhCC-----------
Q psy6208 78 EASNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGA----------- 146 (197)
Q Consensus 78 ~~~~~~~~~~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~~~----------- 146 (197)
....+.+|++++|++.+.+.+...+... ..++.+||+||||||||++|+++|+.+++
T Consensus 6 ~kyRP~~~~divGq~~i~~~L~~~i~~~------------~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~ 73 (472)
T PRK14962 6 RKYRPKTFSEVVGQDHVKKLIINALKKN------------SISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNE 73 (472)
T ss_pred HHHCCCCHHHccCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcc
Confidence 3456789999999999999888877642 34556899999999999999999998864
Q ss_pred -------------eEEEEechhhhhhccCccHHHHHHHHHHHhc----CCCeEEEEcccCccCc
Q psy6208 147 -------------FFFLINGPEIMSKLAGESESNLRKAFEEADK----NSPSIIFIDELDAIAP 193 (197)
Q Consensus 147 -------------~~~~v~~~~~~~~~~~~~~~~~~~~~~~a~~----~~~~vl~lDeid~l~~ 193 (197)
.++.++++. ...-..++.+.+.+.. +...++||||+|.|..
T Consensus 74 c~~c~~i~~g~~~dv~el~aa~------~~gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt~ 131 (472)
T PRK14962 74 CRACRSIDEGTFMDVIELDAAS------NRGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLTK 131 (472)
T ss_pred cHHHHHHhcCCCCccEEEeCcc------cCCHHHHHHHHHHHhhChhcCCeEEEEEEChHHhHH
Confidence 233333211 1122344444443321 3457999999999864
No 76
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.29 E-value=8.7e-12 Score=108.00 Aligned_cols=100 Identities=16% Similarity=0.263 Sum_probs=72.0
Q ss_pred HhhcCCCCcccccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHhCCe---------
Q psy6208 77 EEASNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAF--------- 147 (197)
Q Consensus 77 ~~~~~~~~~~~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~~~~--------- 147 (197)
...+.+.+|++++|++..++.|.+++... ..+..+||+||+|+|||++|+++|+.+++.
T Consensus 7 ~~kyRP~~f~divGq~~v~~~L~~~~~~~------------~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg 74 (509)
T PRK14958 7 ARKWRPRCFQEVIGQAPVVRALSNALDQQ------------YLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCN 74 (509)
T ss_pred HHHHCCCCHHHhcCCHHHHHHHHHHHHhC------------CCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCC
Confidence 34567889999999999999999998642 345568999999999999999999998652
Q ss_pred ---------------EEEEechhhhhhccCccHHHHHHHHHHHh----cCCCeEEEEcccCccCcc
Q psy6208 148 ---------------FFLINGPEIMSKLAGESESNLRKAFEEAD----KNSPSIIFIDELDAIAPK 194 (197)
Q Consensus 148 ---------------~~~v~~~~~~~~~~~~~~~~~~~~~~~a~----~~~~~vl~lDeid~l~~~ 194 (197)
+++++... ...-..++.+.+.+. .+...|+||||+|.|.+.
T Consensus 75 ~C~~C~~i~~g~~~d~~eidaas------~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~~ 134 (509)
T PRK14958 75 DCENCREIDEGRFPDLFEVDAAS------RTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSGH 134 (509)
T ss_pred CCHHHHHHhcCCCceEEEEcccc------cCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCHH
Confidence 23333221 112234555555432 234579999999998763
No 77
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.28 E-value=2.4e-11 Score=100.17 Aligned_cols=68 Identities=28% Similarity=0.367 Sum_probs=54.7
Q ss_pred HhhcCCCCcccccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHhC-----CeEEEE
Q psy6208 77 EEASNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANETG-----AFFFLI 151 (197)
Q Consensus 77 ~~~~~~~~~~~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~~-----~~~~~v 151 (197)
.+...+.+|++++|++..++++.+++.. ...++++|+||||||||++|+++++++. .+++++
T Consensus 6 ~~ky~P~~~~~~~g~~~~~~~L~~~~~~-------------~~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i 72 (337)
T PRK12402 6 TEKYRPALLEDILGQDEVVERLSRAVDS-------------PNLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEF 72 (337)
T ss_pred HHhhCCCcHHHhcCCHHHHHHHHHHHhC-------------CCCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEe
Confidence 4455678899999999999999888763 2234699999999999999999999873 346788
Q ss_pred echhhh
Q psy6208 152 NGPEIM 157 (197)
Q Consensus 152 ~~~~~~ 157 (197)
+++++.
T Consensus 73 ~~~~~~ 78 (337)
T PRK12402 73 NVADFF 78 (337)
T ss_pred chhhhh
Confidence 887654
No 78
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.28 E-value=2e-11 Score=111.47 Aligned_cols=101 Identities=21% Similarity=0.336 Sum_probs=80.7
Q ss_pred CCCcccccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHh----------CCeEEEE
Q psy6208 82 AVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANET----------GAFFFLI 151 (197)
Q Consensus 82 ~~~~~~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~----------~~~~~~v 151 (197)
+-.++.++|++..++++.+.+.. ....+++|+||||+|||++++.+|+.+ +.+++.+
T Consensus 183 ~~~ld~~iGr~~ei~~~i~~l~r-------------~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l 249 (852)
T TIGR03345 183 EGKIDPVLGRDDEIRQMIDILLR-------------RRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSL 249 (852)
T ss_pred CCCCCcccCCHHHHHHHHHHHhc-------------CCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEe
Confidence 45788999999998888776643 345689999999999999999999876 3456777
Q ss_pred echhhh--hhccCccHHHHHHHHHHHhc-CCCeEEEEcccCccCccc
Q psy6208 152 NGPEIM--SKLAGESESNLRKAFEEADK-NSPSIIFIDELDAIAPKR 195 (197)
Q Consensus 152 ~~~~~~--~~~~~~~~~~~~~~~~~a~~-~~~~vl~lDeid~l~~~r 195 (197)
+...+. ..+.|+.+..++.+++.+.. ..+.||||||+|.|.+.+
T Consensus 250 ~l~~l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g 296 (852)
T TIGR03345 250 DLGLLQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAG 296 (852)
T ss_pred ehhhhhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCC
Confidence 776665 35677888899999998764 457899999999998643
No 79
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.27 E-value=1e-11 Score=108.74 Aligned_cols=104 Identities=15% Similarity=0.221 Sum_probs=70.4
Q ss_pred hhcCCCCcccccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHhCCe----------
Q psy6208 78 EASNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAF---------- 147 (197)
Q Consensus 78 ~~~~~~~~~~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~~~~---------- 147 (197)
.++.+.+|++|+|++..++.|.+++..- ..++.+||+||+|+|||++++.+++.+++.
T Consensus 8 rKYRPqtFddVIGQe~vv~~L~~al~~g------------RLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~ 75 (700)
T PRK12323 8 RKWRPRDFTTLVGQEHVVRALTHALEQQ------------RLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITA 75 (700)
T ss_pred HHhCCCcHHHHcCcHHHHHHHHHHHHhC------------CCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCC
Confidence 4566789999999999999999998742 345568999999999999999999998761
Q ss_pred --EEEE-echhhhh----hc---c---CccHHHHHHHHHHHh----cCCCeEEEEcccCccCc
Q psy6208 148 --FFLI-NGPEIMS----KL---A---GESESNLRKAFEEAD----KNSPSIIFIDELDAIAP 193 (197)
Q Consensus 148 --~~~v-~~~~~~~----~~---~---~~~~~~~~~~~~~a~----~~~~~vl~lDeid~l~~ 193 (197)
+-.. +|..+.. .+ . ...-..++++.+... .+...|+||||+|.|..
T Consensus 76 ~PCG~C~sC~~I~aG~hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~ 138 (700)
T PRK12323 76 QPCGQCRACTEIDAGRFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTN 138 (700)
T ss_pred CCCcccHHHHHHHcCCCCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCH
Confidence 0000 1111110 00 0 112234555554432 34567999999999875
No 80
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.27 E-value=2.9e-11 Score=94.24 Aligned_cols=90 Identities=21% Similarity=0.375 Sum_probs=65.7
Q ss_pred CCCccccc--CcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHh---CCeEEEEechhh
Q psy6208 82 AVGYDDIG--GCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANET---GAFFFLINGPEI 156 (197)
Q Consensus 82 ~~~~~~i~--g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~---~~~~~~v~~~~~ 156 (197)
..+|+++. +.+..++++++++.. ..+.+++|+||+|||||++|+++++.. +.++++++|.++
T Consensus 11 ~~~~~~~~~~~~~~~~~~l~~~~~~-------------~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~ 77 (226)
T TIGR03420 11 DPTFDNFYAGGNAELLAALRQLAAG-------------KGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAEL 77 (226)
T ss_pred chhhcCcCcCCcHHHHHHHHHHHhc-------------CCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHH
Confidence 46677764 566778888777542 346789999999999999999999876 568899999887
Q ss_pred hhhccCccHHHHHHHHHHHhcCCCeEEEEcccCccCcc
Q psy6208 157 MSKLAGESESNLRKAFEEADKNSPSIIFIDELDAIAPK 194 (197)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~a~~~~~~vl~lDeid~l~~~ 194 (197)
.... ...+.... ...+|+|||+|.+...
T Consensus 78 ~~~~--------~~~~~~~~--~~~lLvIDdi~~l~~~ 105 (226)
T TIGR03420 78 AQAD--------PEVLEGLE--QADLVCLDDVEAIAGQ 105 (226)
T ss_pred HHhH--------HHHHhhcc--cCCEEEEeChhhhcCC
Confidence 5322 22232222 2469999999998764
No 81
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.27 E-value=1.7e-11 Score=95.87 Aligned_cols=89 Identities=13% Similarity=0.290 Sum_probs=62.7
Q ss_pred cCCCCccccc--CcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHh---CCeEEEEech
Q psy6208 80 SNAVGYDDIG--GCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANET---GAFFFLINGP 154 (197)
Q Consensus 80 ~~~~~~~~i~--g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~---~~~~~~v~~~ 154 (197)
..+++|+++. +.+.++..+.++... .....+++|+||+|||||||+++++++. +.+++++++.
T Consensus 12 ~~~~~~d~f~~~~~~~~~~~l~~~~~~------------~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~ 79 (227)
T PRK08903 12 PPPPTFDNFVAGENAELVARLRELAAG------------PVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAA 79 (227)
T ss_pred CChhhhcccccCCcHHHHHHHHHHHhc------------cCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehH
Confidence 3457788854 445566666665442 2346689999999999999999999875 6788899887
Q ss_pred hhhhhccCccHHHHHHHHHHHhcCCCeEEEEcccCccCcc
Q psy6208 155 EIMSKLAGESESNLRKAFEEADKNSPSIIFIDELDAIAPK 194 (197)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~a~~~~~~vl~lDeid~l~~~ 194 (197)
++... +. .....++|+|||+|.+.+.
T Consensus 80 ~~~~~------------~~--~~~~~~~liiDdi~~l~~~ 105 (227)
T PRK08903 80 SPLLA------------FD--FDPEAELYAVDDVERLDDA 105 (227)
T ss_pred HhHHH------------Hh--hcccCCEEEEeChhhcCch
Confidence 65321 11 1123578999999988654
No 82
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.26 E-value=1.7e-11 Score=107.48 Aligned_cols=97 Identities=18% Similarity=0.282 Sum_probs=69.8
Q ss_pred hcCCCCcccccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHhCCe-----------
Q psy6208 79 ASNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAF----------- 147 (197)
Q Consensus 79 ~~~~~~~~~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~~~~----------- 147 (197)
...+.+|++++|++...+.|.+++... ..+..+||+||+|+|||++|+++|+.+++.
T Consensus 8 KyRPktFddVIGQe~vv~~L~~aI~~g------------rl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C 75 (702)
T PRK14960 8 KYRPRNFNELVGQNHVSRALSSALERG------------RLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVC 75 (702)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccC
Confidence 456789999999999999999988742 345678999999999999999999998652
Q ss_pred -------------EEEEechhhhhhccCccHHHHHHHHHHHh----cCCCeEEEEcccCccCc
Q psy6208 148 -------------FFLINGPEIMSKLAGESESNLRKAFEEAD----KNSPSIIFIDELDAIAP 193 (197)
Q Consensus 148 -------------~~~v~~~~~~~~~~~~~~~~~~~~~~~a~----~~~~~vl~lDeid~l~~ 193 (197)
++.++++. ...-..++.+.+.+. .++..|+||||+|.|..
T Consensus 76 ~sC~~I~~g~hpDviEIDAAs------~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~ 132 (702)
T PRK14960 76 ATCKAVNEGRFIDLIEIDAAS------RTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLST 132 (702)
T ss_pred HHHHHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCH
Confidence 22222211 012234555554432 24567999999999875
No 83
>PRK12377 putative replication protein; Provisional
Probab=99.26 E-value=2.7e-11 Score=95.87 Aligned_cols=72 Identities=25% Similarity=0.436 Sum_probs=51.3
Q ss_pred CCceEEECCCCCcHHHHHHHHHHHh---CCeEEEEechhhhhhccCccH--HHHHHHHHHHhcCCCeEEEEcccCccCc
Q psy6208 120 PRGILLYGPPGTGKTLIARAVANET---GAFFFLINGPEIMSKLAGESE--SNLRKAFEEADKNSPSIIFIDELDAIAP 193 (197)
Q Consensus 120 ~~~ill~G~~GtGKT~la~ala~~~---~~~~~~v~~~~~~~~~~~~~~--~~~~~~~~~a~~~~~~vl~lDeid~l~~ 193 (197)
..+++|+|||||||||||.|+++.+ +.++++++.+++...+..... ......++.. ...++|+|||++....
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l~~~~~~~~~~~~~l~~l--~~~dLLiIDDlg~~~~ 177 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRLHESYDNGQSGEKFLQEL--CKVDLLVLDEIGIQRE 177 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHHHHHHhccchHHHHHHHh--cCCCEEEEcCCCCCCC
Confidence 4689999999999999999999987 678899998887765432110 0112233333 3578999999976543
No 84
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=99.26 E-value=1.4e-11 Score=100.25 Aligned_cols=177 Identities=18% Similarity=0.267 Sum_probs=123.7
Q ss_pred cCCCcchhhHHHHhHHHhhhcCcccccCCEEEEecCcceEEEEEEEecCCCeEEEcCceEEEEcCCCCc--chhHHhhcC
Q psy6208 4 VPEGEMSNLFEVYLKPYFLEAYRPVHKDDLFIVRGGMRAVEFKIVDTDPAPYCIVAADTVIHCEGDPIK--REEEEEASN 81 (197)
Q Consensus 4 ~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 81 (197)
++++....+++.|..+-|.++...-..+.-+.+.+.....++..+...++.......+.++.+...... +...-..+.
T Consensus 120 ~~g~~~~~l~~~~nf~~~l~~~~~~~~~~~V~~~gq~~lmeitPv~~~~~~~e~~lagav~~L~~~~r~ge~~~~~~~~~ 199 (511)
T COG3283 120 LRGHTAAQLINGFNFLRWLEGEPQRSHNEHVVINGQNFLMEITPVYLQDENDEHVLAGAVVMLRSTNRMGEQLQNVAAQD 199 (511)
T ss_pred hcCccHHHhcCcCCHHHHHhcCCCcCCCceEEEcchhheeeccceeecCCcchhheeheeeeehhhhhHHHHHhhccccc
Confidence 355666677788877765555555566677777777778888888777766555555555555432211 112223345
Q ss_pred CCCcccccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHh---CCeEEEEechhhhh
Q psy6208 82 AVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANET---GAFFFLINGPEIMS 158 (197)
Q Consensus 82 ~~~~~~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~---~~~~~~v~~~~~~~ 158 (197)
...|+.+++.+..++.+.+..... +.-...+||.|++||||..+|++.+..+ ..+|+.+||..+..
T Consensus 200 ~~~F~~~v~~S~~mk~~v~qA~k~-----------AmlDAPLLI~GeTGTGKdLlAkaCH~~S~R~~~pFlalNCA~lPe 268 (511)
T COG3283 200 VSGFEQIVAVSPKMKHVVEQAQKL-----------AMLDAPLLITGETGTGKDLLAKACHLASPRHSKPFLALNCASLPE 268 (511)
T ss_pred ccchHHHhhccHHHHHHHHHHHHh-----------hccCCCeEEecCCCchHHHHHHHHhhcCcccCCCeeEeecCCCch
Confidence 667888999888888876654432 2335579999999999999999999877 67999999988764
Q ss_pred h-----ccCccH--HHHHHHHHHHhcCCCeEEEEcccCccCcc
Q psy6208 159 K-----LAGESE--SNLRKAFEEADKNSPSIIFIDELDAIAPK 194 (197)
Q Consensus 159 ~-----~~~~~~--~~~~~~~~~a~~~~~~vl~lDeid~l~~~ 194 (197)
. ++|... ....++|+.|..+ .+|+|||..|++.
T Consensus 269 ~~aEsElFG~apg~~gk~GffE~AngG---TVlLDeIgEmSp~ 308 (511)
T COG3283 269 DAAESELFGHAPGDEGKKGFFEQANGG---TVLLDEIGEMSPR 308 (511)
T ss_pred hHhHHHHhcCCCCCCCccchhhhccCC---eEEeehhhhcCHH
Confidence 3 333322 4556788888776 5999999999875
No 85
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.26 E-value=1.8e-11 Score=109.63 Aligned_cols=97 Identities=28% Similarity=0.463 Sum_probs=68.7
Q ss_pred hhcCCCCcccccCcHHHHH---HHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHhCCeEEEEech
Q psy6208 78 EASNAVGYDDIGGCRKQLA---QIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGP 154 (197)
Q Consensus 78 ~~~~~~~~~~i~g~~~~~~---~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~~~~~~~v~~~ 154 (197)
+...+-++++++|++..+. .+.+.+.. ....+++|+||||||||++|+++++..+.+++.+++.
T Consensus 20 ek~RP~tldd~vGQe~ii~~~~~L~~~i~~-------------~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~ 86 (725)
T PRK13341 20 DRLRPRTLEEFVGQDHILGEGRLLRRAIKA-------------DRVGSLILYGPPGVGKTTLARIIANHTRAHFSSLNAV 86 (725)
T ss_pred HhcCCCcHHHhcCcHHHhhhhHHHHHHHhc-------------CCCceEEEECCCCCCHHHHHHHHHHHhcCcceeehhh
Confidence 3455788999999999885 45555542 3345799999999999999999999999888888875
Q ss_pred hhhhhccCccHHHHHHHHHHH-----hcCCCeEEEEcccCccCcc
Q psy6208 155 EIMSKLAGESESNLRKAFEEA-----DKNSPSIIFIDELDAIAPK 194 (197)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~a-----~~~~~~vl~lDeid~l~~~ 194 (197)
... ...++..++.+ ......+|||||+|.|...
T Consensus 87 ~~~-------i~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~ 124 (725)
T PRK13341 87 LAG-------VKDLRAEVDRAKERLERHGKRTILFIDEVHRFNKA 124 (725)
T ss_pred hhh-------hHHHHHHHHHHHHHhhhcCCceEEEEeChhhCCHH
Confidence 321 11222222222 1234679999999998754
No 86
>KOG0989|consensus
Probab=99.25 E-value=1.4e-11 Score=98.20 Aligned_cols=103 Identities=24% Similarity=0.332 Sum_probs=70.0
Q ss_pred HHhhcCCCCcccccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHhCC------eEE
Q psy6208 76 EEEASNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGA------FFF 149 (197)
Q Consensus 76 ~~~~~~~~~~~~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~~~------~~~ 149 (197)
..+...+-+++++.|++.++..+.+.+.. ....++|||||||||||+.|+++|.+++. .+.
T Consensus 26 wteKYrPkt~de~~gQe~vV~~L~~a~~~-------------~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl 92 (346)
T KOG0989|consen 26 WTEKYRPKTFDELAGQEHVVQVLKNALLR-------------RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVL 92 (346)
T ss_pred hHHHhCCCcHHhhcchHHHHHHHHHHHhh-------------cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchh
Confidence 34556678999999999999999998864 23557999999999999999999999865 233
Q ss_pred EEechhhhhhccCccHHHHHHHHHHHhc---------CC-CeEEEEcccCccCcc
Q psy6208 150 LINGPEIMSKLAGESESNLRKAFEEADK---------NS-PSIIFIDELDAIAPK 194 (197)
Q Consensus 150 ~v~~~~~~~~~~~~~~~~~~~~~~~a~~---------~~-~~vl~lDeid~l~~~ 194 (197)
..++++..+..+.. ..+ .-|..... .. +.|+||||.|.|..+
T Consensus 93 ~lnaSderGisvvr--~Ki-k~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsd 144 (346)
T KOG0989|consen 93 ELNASDERGISVVR--EKI-KNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSD 144 (346)
T ss_pred hhcccccccccchh--hhh-cCHHHHhhccccccCCCCCcceEEEEechhhhhHH
Confidence 34444433322211 111 11222211 11 269999999998754
No 87
>PRK08727 hypothetical protein; Validated
Probab=99.25 E-value=7.7e-11 Score=92.71 Aligned_cols=93 Identities=27% Similarity=0.374 Sum_probs=61.5
Q ss_pred cCCCCcccc-cCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHh---CCeEEEEechh
Q psy6208 80 SNAVGYDDI-GGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANET---GAFFFLINGPE 155 (197)
Q Consensus 80 ~~~~~~~~i-~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~---~~~~~~v~~~~ 155 (197)
.+..+|+++ +|.+.....+...... .....++|+||+|||||||+++++++. +.++.+++..+
T Consensus 13 ~~~~~f~~f~~~~~n~~~~~~~~~~~-------------~~~~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~ 79 (233)
T PRK08727 13 PSDQRFDSYIAAPDGLLAQLQALAAG-------------QSSDWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQA 79 (233)
T ss_pred CCcCChhhccCCcHHHHHHHHHHHhc-------------cCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHH
Confidence 446788885 4555544444332211 223469999999999999999998765 66778887655
Q ss_pred hhhhccCccHHHHHHHHHHHhcCCCeEEEEcccCccCccc
Q psy6208 156 IMSKLAGESESNLRKAFEEADKNSPSIIFIDELDAIAPKR 195 (197)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~a~~~~~~vl~lDeid~l~~~r 195 (197)
+.. .+...++... ..++|+|||+|.+..++
T Consensus 80 ~~~--------~~~~~~~~l~--~~dlLiIDDi~~l~~~~ 109 (233)
T PRK08727 80 AAG--------RLRDALEALE--GRSLVALDGLESIAGQR 109 (233)
T ss_pred hhh--------hHHHHHHHHh--cCCEEEEeCcccccCCh
Confidence 432 2223444433 35799999999987653
No 88
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=99.24 E-value=2.4e-11 Score=105.88 Aligned_cols=102 Identities=23% Similarity=0.368 Sum_probs=74.7
Q ss_pred cCCCCcccccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHh---CCeEEEEechhh
Q psy6208 80 SNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANET---GAFFFLINGPEI 156 (197)
Q Consensus 80 ~~~~~~~~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~---~~~~~~v~~~~~ 156 (197)
....+|++++|.+..++++.+.+... +....+|+|+|++||||+++|++++... +.+|+.++|..+
T Consensus 198 ~~~~~f~~~ig~s~~~~~~~~~~~~~-----------A~~~~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~ 266 (520)
T PRK10820 198 NDDSAFSQIVAVSPKMRQVVEQARKL-----------AMLDAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASI 266 (520)
T ss_pred cccccccceeECCHHHHHHHHHHHHH-----------hCCCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccC
Confidence 45689999999999999888877643 2456679999999999999999998876 468999999876
Q ss_pred hhh-----ccCccH-------HHHHHHHHHHhcCCCeEEEEcccCccCccc
Q psy6208 157 MSK-----LAGESE-------SNLRKAFEEADKNSPSIIFIDELDAIAPKR 195 (197)
Q Consensus 157 ~~~-----~~~~~~-------~~~~~~~~~a~~~~~~vl~lDeid~l~~~r 195 (197)
... ++|... ....++|+.+. ..+||||||+.|++.-
T Consensus 267 ~~~~~e~elFG~~~~~~~~~~~~~~g~~e~a~---~GtL~LdeI~~L~~~~ 314 (520)
T PRK10820 267 PDDVVESELFGHAPGAYPNALEGKKGFFEQAN---GGSVLLDEIGEMSPRM 314 (520)
T ss_pred CHHHHHHHhcCCCCCCcCCcccCCCChhhhcC---CCEEEEeChhhCCHHH
Confidence 432 222111 11123455543 3479999999998753
No 89
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.24 E-value=6.3e-11 Score=93.33 Aligned_cols=92 Identities=16% Similarity=0.225 Sum_probs=61.1
Q ss_pred cCCCCccccc--CcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHh---CCeEEEEech
Q psy6208 80 SNAVGYDDIG--GCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANET---GAFFFLINGP 154 (197)
Q Consensus 80 ~~~~~~~~i~--g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~---~~~~~~v~~~ 154 (197)
.+..+|+++. ++..++..+.++... ....+++|+||+|+|||||+++++++. +..+.+++..
T Consensus 16 ~~~~~fd~f~~~~n~~a~~~l~~~~~~-------------~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~ 82 (235)
T PRK08084 16 PDDETFASFYPGDNDSLLAALQNALRQ-------------EHSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLD 82 (235)
T ss_pred CCcCCccccccCccHHHHHHHHHHHhC-------------CCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHH
Confidence 4567888854 455566666665432 234579999999999999999999875 4567777765
Q ss_pred hhhhhccCccHHHHHHHHHHHhcCCCeEEEEcccCccCcc
Q psy6208 155 EIMSKLAGESESNLRKAFEEADKNSPSIIFIDELDAIAPK 194 (197)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~a~~~~~~vl~lDeid~l~~~ 194 (197)
..... ..++.+... ..++|+|||++.+..+
T Consensus 83 ~~~~~--------~~~~~~~~~--~~dlliiDdi~~~~~~ 112 (235)
T PRK08084 83 KRAWF--------VPEVLEGME--QLSLVCIDNIECIAGD 112 (235)
T ss_pred HHhhh--------hHHHHHHhh--hCCEEEEeChhhhcCC
Confidence 53211 112222222 2468999999998764
No 90
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.24 E-value=2.2e-11 Score=107.98 Aligned_cols=104 Identities=15% Similarity=0.180 Sum_probs=69.9
Q ss_pred hhcCCCCcccccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHhCCeEE--EE----
Q psy6208 78 EASNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFF--LI---- 151 (197)
Q Consensus 78 ~~~~~~~~~~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~~~~~~--~v---- 151 (197)
+++.+.+|++|+|++..++.|.+++..- ..++.+||+||+|+|||++++++++.+++..- ..
T Consensus 8 rKYRPqtFdEVIGQe~Vv~~L~~aL~~g------------RL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~ 75 (830)
T PRK07003 8 RKWRPKDFASLVGQEHVVRALTHALDGG------------RLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGV 75 (830)
T ss_pred HHhCCCcHHHHcCcHHHHHHHHHHHhcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcc
Confidence 4567889999999999999999988642 33556899999999999999999998865210 00
Q ss_pred --echhhhh----hc------cCccHHHHHHHHHHHh----cCCCeEEEEcccCccCc
Q psy6208 152 --NGPEIMS----KL------AGESESNLRKAFEEAD----KNSPSIIFIDELDAIAP 193 (197)
Q Consensus 152 --~~~~~~~----~~------~~~~~~~~~~~~~~a~----~~~~~vl~lDeid~l~~ 193 (197)
+|..+.. .+ ....-..++.+++.+. .+...|+||||+|.|..
T Consensus 76 C~sCr~I~~G~h~DviEIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~ 133 (830)
T PRK07003 76 CRACREIDEGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTN 133 (830)
T ss_pred cHHHHHHhcCCCceEEEecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCH
Confidence 1111110 00 0112234555555443 23457999999999975
No 91
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.24 E-value=8e-11 Score=98.20 Aligned_cols=107 Identities=23% Similarity=0.373 Sum_probs=74.0
Q ss_pred hhcCCCCcccccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHhC---------CeE
Q psy6208 78 EASNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANETG---------AFF 148 (197)
Q Consensus 78 ~~~~~~~~~~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~~---------~~~ 148 (197)
.+.+.+..+++.|.++++++|..++...... ..+.+++|+||||||||++++++++.+. ..+
T Consensus 7 ~l~~~~~p~~l~gRe~e~~~l~~~l~~~~~~---------~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~ 77 (365)
T TIGR02928 7 LLEPDYVPDRIVHRDEQIEELAKALRPILRG---------SRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVT 77 (365)
T ss_pred hCCCCCCCCCCCCcHHHHHHHHHHHHHHHcC---------CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEE
Confidence 3456777789999999999999988754321 3456799999999999999999987652 578
Q ss_pred EEEechhhhh----------hcc--C-------c-cHHHHHHHHHHHh-cCCCeEEEEcccCccCc
Q psy6208 149 FLINGPEIMS----------KLA--G-------E-SESNLRKAFEEAD-KNSPSIIFIDELDAIAP 193 (197)
Q Consensus 149 ~~v~~~~~~~----------~~~--~-------~-~~~~~~~~~~~a~-~~~~~vl~lDeid~l~~ 193 (197)
++++|....+ .+. + . ....+..+++... ...+.||+|||+|.|..
T Consensus 78 v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~ 143 (365)
T TIGR02928 78 VYVNCQILDTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVG 143 (365)
T ss_pred EEEECCCCCCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhcc
Confidence 8889854321 111 0 0 1122333444332 34567999999999973
No 92
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.23 E-value=7.7e-11 Score=98.46 Aligned_cols=105 Identities=22% Similarity=0.252 Sum_probs=69.3
Q ss_pred HhhcCCCCcccccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHhCCeEEE------
Q psy6208 77 EEASNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFL------ 150 (197)
Q Consensus 77 ~~~~~~~~~~~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~~~~~~~------ 150 (197)
.+...+.+|++++|++..++.+.+.+... ..++.++|+||+|+|||++|+++++.+++....
T Consensus 7 ~~kyrP~~~~~iiGq~~~~~~l~~~~~~~------------~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~ 74 (363)
T PRK14961 7 ARKWRPQYFRDIIGQKHIVTAISNGLSLG------------RIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCR 74 (363)
T ss_pred HHHhCCCchhhccChHHHHHHHHHHHHcC------------CCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCC
Confidence 34566789999999999999999888642 335568999999999999999999988642110
Q ss_pred --Eechhhhhh-------cc---CccHHHHHHHHHHHhc----CCCeEEEEcccCccCc
Q psy6208 151 --INGPEIMSK-------LA---GESESNLRKAFEEADK----NSPSIIFIDELDAIAP 193 (197)
Q Consensus 151 --v~~~~~~~~-------~~---~~~~~~~~~~~~~a~~----~~~~vl~lDeid~l~~ 193 (197)
.+|.++... .. ...-..++.+.+.+.. +...|++|||+|.+..
T Consensus 75 ~c~~c~~~~~~~~~d~~~~~~~~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~ 133 (363)
T PRK14961 75 KCIICKEIEKGLCLDLIEIDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSR 133 (363)
T ss_pred CCHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCH
Confidence 011111110 00 0122345555554332 2356999999999874
No 93
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.23 E-value=4.2e-11 Score=104.65 Aligned_cols=100 Identities=23% Similarity=0.363 Sum_probs=77.9
Q ss_pred cccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHhCCeEEEEechhh------h---
Q psy6208 87 DIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEI------M--- 157 (197)
Q Consensus 87 ~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~~~~~~~v~~~~~------~--- 157 (197)
|=.|++++++++.+++.-..... -....-++|.||||+|||+|++.||+.+++.|+.++...+ .
T Consensus 324 dHYGLekVKeRIlEyLAV~~l~~-------~~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRGHR 396 (782)
T COG0466 324 DHYGLEKVKERILEYLAVQKLTK-------KLKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRGHR 396 (782)
T ss_pred cccCchhHHHHHHHHHHHHHHhc-------cCCCcEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHHhcccc
Confidence 56899999999999886421111 1233457899999999999999999999999999875333 2
Q ss_pred hhccCccHHHHHHHHHHHhcCCCeEEEEcccCccCcc
Q psy6208 158 SKLAGESESNLRKAFEEADKNSPSIIFIDELDAIAPK 194 (197)
Q Consensus 158 ~~~~~~~~~~~~~~~~~a~~~~~~vl~lDeid~l~~~ 194 (197)
..|+|+....+-+....+....| +++|||||.|..+
T Consensus 397 RTYIGamPGrIiQ~mkka~~~NP-v~LLDEIDKm~ss 432 (782)
T COG0466 397 RTYIGAMPGKIIQGMKKAGVKNP-VFLLDEIDKMGSS 432 (782)
T ss_pred ccccccCChHHHHHHHHhCCcCC-eEEeechhhccCC
Confidence 34778888888788888877665 8999999999876
No 94
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.23 E-value=3.1e-11 Score=108.78 Aligned_cols=105 Identities=16% Similarity=0.243 Sum_probs=69.6
Q ss_pred hhcCCCCcccccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHhCCeEE-------E
Q psy6208 78 EASNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFF-------L 150 (197)
Q Consensus 78 ~~~~~~~~~~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~~~~~~-------~ 150 (197)
+.+.+.+|++|+|++.+++.|++++..- +.+..+||+||+|+|||++|+++|+.+++.-. .
T Consensus 8 eKyRP~tFddIIGQe~Iv~~LknaI~~~------------rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~ 75 (944)
T PRK14949 8 RKWRPATFEQMVGQSHVLHALTNALTQQ------------RLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGV 75 (944)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHHhC------------CCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCC
Confidence 3566789999999999999999888642 33455799999999999999999999866310 0
Q ss_pred E-echhhhhh-------ccC---ccHHHHHHHHHHHh----cCCCeEEEEcccCccCcc
Q psy6208 151 I-NGPEIMSK-------LAG---ESESNLRKAFEEAD----KNSPSIIFIDELDAIAPK 194 (197)
Q Consensus 151 v-~~~~~~~~-------~~~---~~~~~~~~~~~~a~----~~~~~vl~lDeid~l~~~ 194 (197)
+ +|..+... +-+ ..-..++.+.+.+. .+...|+||||+|.|...
T Consensus 76 C~sC~~i~~g~~~DviEidAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT~e 134 (944)
T PRK14949 76 CSSCVEIAQGRFVDLIEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRS 134 (944)
T ss_pred chHHHHHhcCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcCHH
Confidence 0 11111110 000 11233454444332 345679999999999753
No 95
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=99.21 E-value=6.1e-11 Score=84.31 Aligned_cols=76 Identities=37% Similarity=0.628 Sum_probs=57.7
Q ss_pred CCceEEECCCCCcHHHHHHHHHHHhCCe---EEEEechhhhhh--------------ccCccHHHHHHHHHHHhcCCCeE
Q psy6208 120 PRGILLYGPPGTGKTLIARAVANETGAF---FFLINGPEIMSK--------------LAGESESNLRKAFEEADKNSPSI 182 (197)
Q Consensus 120 ~~~ill~G~~GtGKT~la~ala~~~~~~---~~~v~~~~~~~~--------------~~~~~~~~~~~~~~~a~~~~~~v 182 (197)
+..++|+||||||||++++.++..+... ++++++...... ............++.+....+++
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 81 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDV 81 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 4579999999999999999999998664 888887654322 11233445667777787776799
Q ss_pred EEEcccCccCccc
Q psy6208 183 IFIDELDAIAPKR 195 (197)
Q Consensus 183 l~lDeid~l~~~r 195 (197)
|++||++.+....
T Consensus 82 iiiDei~~~~~~~ 94 (148)
T smart00382 82 LILDEITSLLDAE 94 (148)
T ss_pred EEEECCcccCCHH
Confidence 9999999987653
No 96
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.21 E-value=9.9e-11 Score=100.54 Aligned_cols=97 Identities=22% Similarity=0.324 Sum_probs=70.4
Q ss_pred hcCCCCcccccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHhCCe-----------
Q psy6208 79 ASNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAF----------- 147 (197)
Q Consensus 79 ~~~~~~~~~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~~~~----------- 147 (197)
.+.+.+|++++|++..++.+.+++..- ..+..+||+||+|+|||++|+.+|+.+++.
T Consensus 6 KyRP~~f~dliGQe~vv~~L~~a~~~~------------ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C 73 (491)
T PRK14964 6 KYRPSSFKDLVGQDVLVRILRNAFTLN------------KIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTC 73 (491)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHHcC------------CCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCcccc
Confidence 456789999999999999998887642 345689999999999999999999876431
Q ss_pred -------------EEEEechhhhhhccCccHHHHHHHHHHHhc----CCCeEEEEcccCccCc
Q psy6208 148 -------------FFLINGPEIMSKLAGESESNLRKAFEEADK----NSPSIIFIDELDAIAP 193 (197)
Q Consensus 148 -------------~~~v~~~~~~~~~~~~~~~~~~~~~~~a~~----~~~~vl~lDeid~l~~ 193 (197)
++++++++ ...-..++.+.+.+.. +...|+||||+|.|..
T Consensus 74 ~~C~~i~~~~~~Dv~eidaas------~~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~ 130 (491)
T PRK14964 74 HNCISIKNSNHPDVIEIDAAS------NTSVDDIKVILENSCYLPISSKFKVYIIDEVHMLSN 130 (491)
T ss_pred HHHHHHhccCCCCEEEEeccc------CCCHHHHHHHHHHHHhccccCCceEEEEeChHhCCH
Confidence 23333321 1123456666655532 3457999999999865
No 97
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=99.21 E-value=6.9e-11 Score=94.00 Aligned_cols=76 Identities=28% Similarity=0.503 Sum_probs=55.1
Q ss_pred CCCCceEEECCCCCcHHHHHHHHHHHh---CCeEEEEechhhhhhccCccHH-HHHHHHHHHhcCCCeEEEEcccCccCc
Q psy6208 118 KPPRGILLYGPPGTGKTLIARAVANET---GAFFFLINGPEIMSKLAGESES-NLRKAFEEADKNSPSIIFIDELDAIAP 193 (197)
Q Consensus 118 ~~~~~ill~G~~GtGKT~la~ala~~~---~~~~~~v~~~~~~~~~~~~~~~-~~~~~~~~a~~~~~~vl~lDeid~l~~ 193 (197)
....+++|+||||+||||||.|+++++ |.++.+++.++++..+...... .....+... -...++|+|||+.....
T Consensus 103 ~~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~~~~~~~~~l~~~-l~~~dlLIiDDlG~~~~ 181 (254)
T COG1484 103 ERGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAFDEGRLEEKLLRE-LKKVDLLIIDDIGYEPF 181 (254)
T ss_pred ccCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhcCchHHHHHHH-hhcCCEEEEecccCccC
Confidence 357789999999999999999999987 7899999999998776432221 111112221 12468999999988654
Q ss_pred c
Q psy6208 194 K 194 (197)
Q Consensus 194 ~ 194 (197)
.
T Consensus 182 ~ 182 (254)
T COG1484 182 S 182 (254)
T ss_pred C
Confidence 3
No 98
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.20 E-value=2e-10 Score=96.83 Aligned_cols=106 Identities=25% Similarity=0.352 Sum_probs=72.8
Q ss_pred hhcCCCCcccccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHh-----CCeEEEEe
Q psy6208 78 EASNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANET-----GAFFFLIN 152 (197)
Q Consensus 78 ~~~~~~~~~~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~-----~~~~~~v~ 152 (197)
.+.+.+..+.+.|.++.++++...+...... ..+.+++|+||||+|||++++.+++.+ +..+++++
T Consensus 22 ~l~~~~~P~~l~~Re~e~~~l~~~l~~~~~~---------~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in 92 (394)
T PRK00411 22 VLEPDYVPENLPHREEQIEELAFALRPALRG---------SRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYIN 92 (394)
T ss_pred hCCCCCcCCCCCCHHHHHHHHHHHHHHHhCC---------CCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEE
Confidence 3455667788999999999999988654321 345679999999999999999999876 46789999
Q ss_pred chhhh----------hhccC-------cc-HHHHHHHHHHHh-cCCCeEEEEcccCccC
Q psy6208 153 GPEIM----------SKLAG-------ES-ESNLRKAFEEAD-KNSPSIIFIDELDAIA 192 (197)
Q Consensus 153 ~~~~~----------~~~~~-------~~-~~~~~~~~~~a~-~~~~~vl~lDeid~l~ 192 (197)
|.... ..+.+ .. ...+..+.+... ...+.||+|||+|.+.
T Consensus 93 ~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~ 151 (394)
T PRK00411 93 CQIDRTRYAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLF 151 (394)
T ss_pred CCcCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhh
Confidence 85432 11111 11 122223333322 2456899999999997
No 99
>PRK07952 DNA replication protein DnaC; Validated
Probab=99.20 E-value=1.2e-10 Score=91.95 Aligned_cols=71 Identities=28% Similarity=0.500 Sum_probs=52.3
Q ss_pred CceEEECCCCCcHHHHHHHHHHHh---CCeEEEEechhhhhhccCc---cHHHHHHHHHHHhcCCCeEEEEcccCccCc
Q psy6208 121 RGILLYGPPGTGKTLIARAVANET---GAFFFLINGPEIMSKLAGE---SESNLRKAFEEADKNSPSIIFIDELDAIAP 193 (197)
Q Consensus 121 ~~ill~G~~GtGKT~la~ala~~~---~~~~~~v~~~~~~~~~~~~---~~~~~~~~~~~a~~~~~~vl~lDeid~l~~ 193 (197)
.+++|+|++|||||||+.++++++ +.++++++..++...+... .......+++... .+++|+|||++....
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~~l~~~~~~~~~~~~~~l~~l~--~~dlLvIDDig~~~~ 176 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAMKDTFSNSETSEEQLLNDLS--NVDLLVIDEIGVQTE 176 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHHHHHHHHhhccccHHHHHHHhc--cCCEEEEeCCCCCCC
Confidence 589999999999999999999987 7789999988887644321 1111223344332 478999999988754
No 100
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.20 E-value=4.9e-11 Score=105.27 Aligned_cols=105 Identities=19% Similarity=0.290 Sum_probs=69.5
Q ss_pred hhcCCCCcccccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHhCCeEEE-------
Q psy6208 78 EASNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFL------- 150 (197)
Q Consensus 78 ~~~~~~~~~~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~~~~~~~------- 150 (197)
.++.+-+|++|+|++..++.|.+.+..- ..+..+||+||+|+|||++|+.+|+.+++....
T Consensus 8 ~KyRP~~f~divGQe~vv~~L~~~l~~~------------rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~ 75 (647)
T PRK07994 8 RKWRPQTFAEVVGQEHVLTALANALDLG------------RLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGE 75 (647)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCC
Confidence 3466789999999999999999888642 334558999999999999999999998663100
Q ss_pred E-echhhhhh-------ccC---ccHHHHHHHHHHHh----cCCCeEEEEcccCccCcc
Q psy6208 151 I-NGPEIMSK-------LAG---ESESNLRKAFEEAD----KNSPSIIFIDELDAIAPK 194 (197)
Q Consensus 151 v-~~~~~~~~-------~~~---~~~~~~~~~~~~a~----~~~~~vl~lDeid~l~~~ 194 (197)
. .|..+... +.+ ..-..++.+.+.+. .+...|+||||+|.|...
T Consensus 76 C~~C~~i~~g~~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~ 134 (647)
T PRK07994 76 CDNCREIEQGRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRH 134 (647)
T ss_pred CHHHHHHHcCCCCCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHH
Confidence 0 01111100 000 12234455444432 345679999999998753
No 101
>PRK06893 DNA replication initiation factor; Validated
Probab=99.19 E-value=8.4e-11 Score=92.25 Aligned_cols=66 Identities=17% Similarity=0.244 Sum_probs=45.3
Q ss_pred CCceEEECCCCCcHHHHHHHHHHHh---CCeEEEEechhhhhhccCccHHHHHHHHHHHhcCCCeEEEEcccCccCccc
Q psy6208 120 PRGILLYGPPGTGKTLIARAVANET---GAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPSIIFIDELDAIAPKR 195 (197)
Q Consensus 120 ~~~ill~G~~GtGKT~la~ala~~~---~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~vl~lDeid~l~~~r 195 (197)
.+.++||||||||||||++++|++. +..+.+++...... .....++... +.++|+|||++.+.+++
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~~~--------~~~~~~~~~~--~~dlLilDDi~~~~~~~ 107 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKSQY--------FSPAVLENLE--QQDLVCLDDLQAVIGNE 107 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHhhh--------hhHHHHhhcc--cCCEEEEeChhhhcCCh
Confidence 3458999999999999999999886 45666666543211 1112233332 46799999999987643
No 102
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=99.19 E-value=2.3e-11 Score=102.58 Aligned_cols=99 Identities=27% Similarity=0.433 Sum_probs=76.6
Q ss_pred CCCcccccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHh---CCeEEEEechhhhh
Q psy6208 82 AVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANET---GAFFFLINGPEIMS 158 (197)
Q Consensus 82 ~~~~~~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~---~~~~~~v~~~~~~~ 158 (197)
...+..|+|.+.++.++.+.+... +....+|||.|++||||..+|++|++.+ +.|++++||+.+..
T Consensus 219 ~~~~~~iIG~S~am~~ll~~i~~V-----------A~Sd~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlPe 287 (550)
T COG3604 219 VLEVGGIIGRSPAMRQLLKEIEVV-----------AKSDSTVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALPE 287 (550)
T ss_pred hcccccceecCHHHHHHHHHHHHH-----------hcCCCeEEEecCCCccHHHHHHHHHhhCcccCCCceeeeccccch
Confidence 456678999999999999998865 4677899999999999999999999988 56999999987753
Q ss_pred -----hccCccHHHH-------HHHHHHHhcCCCeEEEEcccCccCcc
Q psy6208 159 -----KLAGESESNL-------RKAFEEADKNSPSIIFIDELDAIAPK 194 (197)
Q Consensus 159 -----~~~~~~~~~~-------~~~~~~a~~~~~~vl~lDeid~l~~~ 194 (197)
+++|+....+ .+-|+.|.. ..||||||+.|+.+
T Consensus 288 sLlESELFGHeKGAFTGA~~~r~GrFElAdG---GTLFLDEIGelPL~ 332 (550)
T COG3604 288 SLLESELFGHEKGAFTGAINTRRGRFELADG---GTLFLDEIGELPLA 332 (550)
T ss_pred HHHHHHHhcccccccccchhccCcceeecCC---CeEechhhccCCHH
Confidence 3344433222 223444444 47999999999864
No 103
>PRK08181 transposase; Validated
Probab=99.18 E-value=5.8e-11 Score=95.00 Aligned_cols=75 Identities=25% Similarity=0.467 Sum_probs=54.5
Q ss_pred CCCceEEECCCCCcHHHHHHHHHHHh---CCeEEEEechhhhhhccCcc-HHHHHHHHHHHhcCCCeEEEEcccCccCcc
Q psy6208 119 PPRGILLYGPPGTGKTLIARAVANET---GAFFFLINGPEIMSKLAGES-ESNLRKAFEEADKNSPSIIFIDELDAIAPK 194 (197)
Q Consensus 119 ~~~~ill~G~~GtGKT~la~ala~~~---~~~~~~v~~~~~~~~~~~~~-~~~~~~~~~~a~~~~~~vl~lDeid~l~~~ 194 (197)
...+++|+||||||||||+.++++++ +..+++++..++...+.... .......++... .+++|+|||++.+..+
T Consensus 105 ~~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~l~--~~dLLIIDDlg~~~~~ 182 (269)
T PRK08181 105 KGANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLESAIAKLD--KFDLLILDDLAYVTKD 182 (269)
T ss_pred cCceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHHhCCcHHHHHHHHh--cCCEEEEeccccccCC
Confidence 45689999999999999999998765 78899999988877653211 112223333332 4789999999988764
Q ss_pred c
Q psy6208 195 R 195 (197)
Q Consensus 195 r 195 (197)
.
T Consensus 183 ~ 183 (269)
T PRK08181 183 Q 183 (269)
T ss_pred H
Confidence 3
No 104
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.18 E-value=1.7e-10 Score=99.74 Aligned_cols=104 Identities=20% Similarity=0.300 Sum_probs=71.7
Q ss_pred hhcCCCCcccccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHhCCeEEE-------
Q psy6208 78 EASNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFL------- 150 (197)
Q Consensus 78 ~~~~~~~~~~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~~~~~~~------- 150 (197)
....+.+|++++|++..++.+...+..- ..+..+||+||+|+|||++|+++|+.+++....
T Consensus 13 ~kyRP~~f~dliGq~~vv~~L~~ai~~~------------ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~ 80 (507)
T PRK06645 13 RKYRPSNFAELQGQEVLVKVLSYTILND------------RLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIK 80 (507)
T ss_pred hhhCCCCHHHhcCcHHHHHHHHHHHHcC------------CCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcC
Confidence 3466789999999999999998877542 345689999999999999999999998653110
Q ss_pred -----Eechhhhhh-------c---cCccHHHHHHHHHHHhc----CCCeEEEEcccCccCc
Q psy6208 151 -----INGPEIMSK-------L---AGESESNLRKAFEEADK----NSPSIIFIDELDAIAP 193 (197)
Q Consensus 151 -----v~~~~~~~~-------~---~~~~~~~~~~~~~~a~~----~~~~vl~lDeid~l~~ 193 (197)
-+|..+... + .......++.+++.+.. +...|+||||+|.|..
T Consensus 81 ~C~~C~~C~~i~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~ 142 (507)
T PRK06645 81 TCEQCTNCISFNNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSK 142 (507)
T ss_pred CCCCChHHHHHhcCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCH
Confidence 011122111 0 01233456666666542 3457999999999865
No 105
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.18 E-value=7.9e-11 Score=101.94 Aligned_cols=98 Identities=18% Similarity=0.307 Sum_probs=68.4
Q ss_pred hhcCCCCcccccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHhCCe----------
Q psy6208 78 EASNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAF---------- 147 (197)
Q Consensus 78 ~~~~~~~~~~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~~~~---------- 147 (197)
....+.+|++++|++.+++.|.+++... ..+..+||+||||+|||++|+++++.+.+.
T Consensus 6 ~KyRP~~~~dvvGq~~v~~~L~~~i~~~------------~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C 73 (504)
T PRK14963 6 QRARPITFDEVVGQEHVKEVLLAALRQG------------RLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGEC 73 (504)
T ss_pred HhhCCCCHHHhcChHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcC
Confidence 3466789999999999999999988752 334557999999999999999999988531
Q ss_pred -------------EEEEechhhhhhccCccHHHHHHHHHHHh----cCCCeEEEEcccCccCc
Q psy6208 148 -------------FFLINGPEIMSKLAGESESNLRKAFEEAD----KNSPSIIFIDELDAIAP 193 (197)
Q Consensus 148 -------------~~~v~~~~~~~~~~~~~~~~~~~~~~~a~----~~~~~vl~lDeid~l~~ 193 (197)
++.++... ...-..++.+.+.+. .+.+.++||||+|.+..
T Consensus 74 ~sc~~i~~~~h~dv~el~~~~------~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~ 130 (504)
T PRK14963 74 ESCLAVRRGAHPDVLEIDAAS------NNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSK 130 (504)
T ss_pred hhhHHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhhccccCCCeEEEEECccccCH
Confidence 22333211 112233444433332 24567999999998854
No 106
>PRK05642 DNA replication initiation factor; Validated
Probab=99.18 E-value=1.9e-10 Score=90.49 Aligned_cols=66 Identities=21% Similarity=0.357 Sum_probs=49.2
Q ss_pred CCceEEECCCCCcHHHHHHHHHHHh---CCeEEEEechhhhhhccCccHHHHHHHHHHHhcCCCeEEEEcccCccCccc
Q psy6208 120 PRGILLYGPPGTGKTLIARAVANET---GAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPSIIFIDELDAIAPKR 195 (197)
Q Consensus 120 ~~~ill~G~~GtGKT~la~ala~~~---~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~vl~lDeid~l~~~r 195 (197)
..+++|+||+|+|||||+++++++. +..+++++..++.... ..+.+... ..++|+|||++.+.++.
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~~--------~~~~~~~~--~~d~LiiDDi~~~~~~~ 113 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDRG--------PELLDNLE--QYELVCLDDLDVIAGKA 113 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhhh--------HHHHHhhh--hCCEEEEechhhhcCCh
Confidence 3679999999999999999998765 6788999988775421 12223332 24699999999887653
No 107
>KOG0742|consensus
Probab=99.18 E-value=5.9e-11 Score=98.09 Aligned_cols=109 Identities=28% Similarity=0.460 Sum_probs=76.7
Q ss_pred CCCcccccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhhhcc
Q psy6208 82 AVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLA 161 (197)
Q Consensus 82 ~~~~~~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~~~~~~~v~~~~~~~~~~ 161 (197)
.-.+++++-.....+.|.++...--+. .....+-++|++|||||||||++|+.||..+|..+-.+.+.++. .+-
T Consensus 351 k~pl~~ViL~psLe~Rie~lA~aTaNT-----K~h~apfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVA-PlG 424 (630)
T KOG0742|consen 351 KDPLEGVILHPSLEKRIEDLAIATANT-----KKHQAPFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVA-PLG 424 (630)
T ss_pred CCCcCCeecCHHHHHHHHHHHHHhccc-----ccccchhhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCcc-ccc
Confidence 334677777777777776654432111 11124556899999999999999999999999888777665542 222
Q ss_pred CccHHHHHHHHHHHhcCCC-eEEEEcccCccCcccC
Q psy6208 162 GESESNLRKAFEEADKNSP-SIIFIDELDAIAPKRE 196 (197)
Q Consensus 162 ~~~~~~~~~~~~~a~~~~~-~vl~lDeid~l~~~r~ 196 (197)
...-..++.+|+-+..... -+|||||.|.+..+|.
T Consensus 425 ~qaVTkiH~lFDWakkS~rGLllFIDEADAFLceRn 460 (630)
T KOG0742|consen 425 AQAVTKIHKLFDWAKKSRRGLLLFIDEADAFLCERN 460 (630)
T ss_pred hHHHHHHHHHHHHHhhcccceEEEehhhHHHHHHhc
Confidence 2344678899998876544 4799999999988774
No 108
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.18 E-value=4e-11 Score=107.95 Aligned_cols=104 Identities=20% Similarity=0.365 Sum_probs=70.9
Q ss_pred cccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhh-----hcc
Q psy6208 87 DIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMS-----KLA 161 (197)
Q Consensus 87 ~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~~~~~~~v~~~~~~~-----~~~ 161 (197)
.++|++.+++.+.+.+........ . .-.+...+||+||||||||.+|+++|..++.+++.++++++.. .++
T Consensus 459 ~ViGQ~~ai~~l~~~i~~~~~gl~--~--~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~se~~~~~~~~~Li 534 (758)
T PRK11034 459 LVFGQDKAIEALTEAIKMSRAGLG--H--EHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLI 534 (758)
T ss_pred eEeCcHHHHHHHHHHHHHHhcccc--C--CCCCcceEEEECCCCCCHHHHHHHHHHHhCCCcEEeechhhcccccHHHHc
Confidence 479999999999998875321100 0 0123456999999999999999999999999999999987643 233
Q ss_pred CccHH----HHHHHH-HHHhcCCCeEEEEcccCccCcc
Q psy6208 162 GESES----NLRKAF-EEADKNSPSIIFIDELDAIAPK 194 (197)
Q Consensus 162 ~~~~~----~~~~~~-~~a~~~~~~vl~lDeid~l~~~ 194 (197)
|.... .....+ +..++...+||+|||+|.+.+.
T Consensus 535 G~~~gyvg~~~~g~L~~~v~~~p~sVlllDEieka~~~ 572 (758)
T PRK11034 535 GAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHPD 572 (758)
T ss_pred CCCCCcccccccchHHHHHHhCCCcEEEeccHhhhhHH
Confidence 32110 011122 3334445689999999998764
No 109
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.18 E-value=5.8e-11 Score=104.50 Aligned_cols=105 Identities=16% Similarity=0.252 Sum_probs=70.4
Q ss_pred hhcCCCCcccccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHhCCeE------E--
Q psy6208 78 EASNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFF------F-- 149 (197)
Q Consensus 78 ~~~~~~~~~~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~~~~~------~-- 149 (197)
.++.+.+|++++|++..++.|.+++..- ..+..+||+||+|+|||++|+++|+.+++.- .
T Consensus 8 ~KyRP~~f~dviGQe~vv~~L~~~l~~~------------rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~ 75 (618)
T PRK14951 8 RKYRPRSFSEMVGQEHVVQALTNALTQQ------------RLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITA 75 (618)
T ss_pred HHHCCCCHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCC
Confidence 4566789999999999999999988752 3455689999999999999999999986521 0
Q ss_pred ----E-Eechhhhhh-------cc---CccHHHHHHHHHHHhc----CCCeEEEEcccCccCcc
Q psy6208 150 ----L-INGPEIMSK-------LA---GESESNLRKAFEEADK----NSPSIIFIDELDAIAPK 194 (197)
Q Consensus 150 ----~-v~~~~~~~~-------~~---~~~~~~~~~~~~~a~~----~~~~vl~lDeid~l~~~ 194 (197)
. -+|..+... +- ...-..++.+.+.+.. +...|+||||+|.|...
T Consensus 76 ~pCg~C~~C~~i~~g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~ 139 (618)
T PRK14951 76 TPCGVCQACRDIDSGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNT 139 (618)
T ss_pred CCCCccHHHHHHHcCCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHH
Confidence 0 012111110 00 1122345555555432 33579999999998753
No 110
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=99.17 E-value=2.2e-11 Score=105.86 Aligned_cols=100 Identities=27% Similarity=0.384 Sum_probs=74.9
Q ss_pred CCCcccccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHH--------h---CCeEEE
Q psy6208 82 AVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANE--------T---GAFFFL 150 (197)
Q Consensus 82 ~~~~~~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~--------~---~~~~~~ 150 (197)
..+|++++|.+..++++.+.+... .....+|||+|++||||+++|++|++. + +.+|+.
T Consensus 215 ~~~f~~iiG~S~~m~~~~~~i~~~-----------A~s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~ 283 (538)
T PRK15424 215 RYVLGDLLGQSPQMEQVRQTILLY-----------ARSSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVA 283 (538)
T ss_pred ccchhheeeCCHHHHHHHHHHHHH-----------hCCCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEE
Confidence 357889999999999999988754 355778999999999999999999987 3 569999
Q ss_pred Eechhhhhh-----ccCccHH--------HHHHHHHHHhcCCCeEEEEcccCccCccc
Q psy6208 151 INGPEIMSK-----LAGESES--------NLRKAFEEADKNSPSIIFIDELDAIAPKR 195 (197)
Q Consensus 151 v~~~~~~~~-----~~~~~~~--------~~~~~~~~a~~~~~~vl~lDeid~l~~~r 195 (197)
+||..+... ++|..+. ....+|+.+.. .+||||||+.|+..-
T Consensus 284 inCaal~e~lleseLFG~~~gaftga~~~~~~Gl~e~A~g---GTLfLdeI~~Lp~~~ 338 (538)
T PRK15424 284 VNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHG---GTLFLDEIGEMPLPL 338 (538)
T ss_pred eecccCChhhHHHHhcCCccccccCccccccCCchhccCC---CEEEEcChHhCCHHH
Confidence 999876432 2232111 12235555544 479999999998753
No 111
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.17 E-value=1.9e-10 Score=101.65 Aligned_cols=104 Identities=20% Similarity=0.286 Sum_probs=70.6
Q ss_pred hhcCCCCcccccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHhCCeEE-------E
Q psy6208 78 EASNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFF-------L 150 (197)
Q Consensus 78 ~~~~~~~~~~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~~~~~~-------~ 150 (197)
.++.+.+|++|+|++.+++.|.+++... +.+..+||+||+|+|||++|+++++.+++.-. .
T Consensus 8 rKYRP~tFddIIGQe~vv~~L~~ai~~~------------rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~ 75 (709)
T PRK08691 8 RKWRPKTFADLVGQEHVVKALQNALDEG------------RLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGV 75 (709)
T ss_pred HHhCCCCHHHHcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcc
Confidence 3466789999999999999999998742 34567999999999999999999998765311 0
Q ss_pred E-echhhhhh----------ccCccHHHHHHHHHHHh----cCCCeEEEEcccCccCc
Q psy6208 151 I-NGPEIMSK----------LAGESESNLRKAFEEAD----KNSPSIIFIDELDAIAP 193 (197)
Q Consensus 151 v-~~~~~~~~----------~~~~~~~~~~~~~~~a~----~~~~~vl~lDeid~l~~ 193 (197)
. .|..+... ........++.+++.+. .+...|+||||+|.|..
T Consensus 76 C~sCr~i~~g~~~DvlEidaAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~ 133 (709)
T PRK08691 76 CQSCTQIDAGRYVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSK 133 (709)
T ss_pred cHHHHHHhccCccceEEEeccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCH
Confidence 0 01111100 00112335566665432 23457999999998864
No 112
>KOG0735|consensus
Probab=99.16 E-value=7.4e-11 Score=102.97 Aligned_cols=76 Identities=30% Similarity=0.386 Sum_probs=67.9
Q ss_pred CCCCceEEECCCCCcHHHHHHHHHHHh----CCeEEEEechhhhhhccCccHHHHHHHHHHHhcCCCeEEEEcccCccCc
Q psy6208 118 KPPRGILLYGPPGTGKTLIARAVANET----GAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPSIIFIDELDAIAP 193 (197)
Q Consensus 118 ~~~~~ill~G~~GtGKT~la~ala~~~----~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~vl~lDeid~l~~ 193 (197)
..+++|||+||+|+|||.|+++++++. -+++.+++|+.+.........+.+..+|..+.+++|+||+|||+|.|..
T Consensus 429 ~~~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~~e~iQk~l~~vfse~~~~~PSiIvLDdld~l~~ 508 (952)
T KOG0735|consen 429 FRHGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSSLEKIQKFLNNVFSEALWYAPSIIVLDDLDCLAS 508 (952)
T ss_pred cccccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchhHHHHHHHHHHHHHHHHhhCCcEEEEcchhhhhc
Confidence 456789999999999999999999987 4578899999998776666778889999999999999999999999987
No 113
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.15 E-value=1.2e-10 Score=101.49 Aligned_cols=104 Identities=18% Similarity=0.257 Sum_probs=69.7
Q ss_pred hhcCCCCcccccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHhCCeEE-------E
Q psy6208 78 EASNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFF-------L 150 (197)
Q Consensus 78 ~~~~~~~~~~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~~~~~~-------~ 150 (197)
..+.+.+|++++|++.+++.+..++... ..+..+||+||+|+|||++|+.+++.+++... .
T Consensus 8 ~k~rP~~f~divGq~~v~~~L~~~i~~~------------~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~ 75 (527)
T PRK14969 8 RKWRPKSFSELVGQEHVVRALTNALEQQ------------RLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGV 75 (527)
T ss_pred HHhCCCcHHHhcCcHHHHHHHHHHHHcC------------CCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCC
Confidence 3456789999999999999999988742 34556899999999999999999999865210 0
Q ss_pred E-echhhhhh-------c---cCccHHHHHHHHHHHhc----CCCeEEEEcccCccCc
Q psy6208 151 I-NGPEIMSK-------L---AGESESNLRKAFEEADK----NSPSIIFIDELDAIAP 193 (197)
Q Consensus 151 v-~~~~~~~~-------~---~~~~~~~~~~~~~~a~~----~~~~vl~lDeid~l~~ 193 (197)
. .|..+... . ....-..++.+.+.+.. +...|+||||+|.|..
T Consensus 76 C~~C~~i~~~~~~d~~ei~~~~~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~ 133 (527)
T PRK14969 76 CSACLEIDSGRFVDLIEVDAASNTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSK 133 (527)
T ss_pred CHHHHHHhcCCCCceeEeeccccCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCH
Confidence 0 01111000 0 01123345666555432 3457999999999875
No 114
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=99.15 E-value=3.4e-11 Score=104.65 Aligned_cols=101 Identities=27% Similarity=0.418 Sum_probs=75.6
Q ss_pred CCCCcccccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHh---CCeEEEEechhhh
Q psy6208 81 NAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANET---GAFFFLINGPEIM 157 (197)
Q Consensus 81 ~~~~~~~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~---~~~~~~v~~~~~~ 157 (197)
...+|++++|.+..++++.+.+... .....+|||+|++||||+++|++|++.. +.+|+.++|..+.
T Consensus 207 ~~~~f~~iiG~S~~m~~~~~~i~~~-----------A~~~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~ 275 (526)
T TIGR02329 207 TRYRLDDLLGASAPMEQVRALVRLY-----------ARSDATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIA 275 (526)
T ss_pred cccchhheeeCCHHHHHHHHHHHHH-----------hCCCCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCC
Confidence 3467899999999999999988754 3556789999999999999999999876 5699999998764
Q ss_pred hh-----ccCccH--------HHHHHHHHHHhcCCCeEEEEcccCccCccc
Q psy6208 158 SK-----LAGESE--------SNLRKAFEEADKNSPSIIFIDELDAIAPKR 195 (197)
Q Consensus 158 ~~-----~~~~~~--------~~~~~~~~~a~~~~~~vl~lDeid~l~~~r 195 (197)
.. ++|..+ .....+|+.+.. ..||||||+.|+..-
T Consensus 276 e~lleseLFG~~~gaftga~~~~~~Gl~e~A~g---GTLfLdeI~~Lp~~~ 323 (526)
T TIGR02329 276 ESLLEAELFGYEEGAFTGARRGGRTGLIEAAHR---GTLFLDEIGEMPLPL 323 (526)
T ss_pred hhHHHHHhcCCcccccccccccccccchhhcCC---ceEEecChHhCCHHH
Confidence 32 222211 112344555543 479999999998753
No 115
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.15 E-value=3.4e-10 Score=88.40 Aligned_cols=91 Identities=26% Similarity=0.438 Sum_probs=70.9
Q ss_pred CCCCcccccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHh---CCeEEEEechhhh
Q psy6208 81 NAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANET---GAFFFLINGPEIM 157 (197)
Q Consensus 81 ~~~~~~~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~---~~~~~~v~~~~~~ 157 (197)
..+.++++.|.+.+++.+.+....++.. .+..++||||++|||||++++++.++. |..++.+...++.
T Consensus 22 ~~~~l~~L~Gie~Qk~~l~~Nt~~Fl~G---------~pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~L~ 92 (249)
T PF05673_consen 22 DPIRLDDLIGIERQKEALIENTEQFLQG---------LPANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKEDLG 92 (249)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHHcC---------CCCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHHhc
Confidence 3688999999999999998888765443 567789999999999999999999876 7788888876663
Q ss_pred hhccCccHHHHHHHHHHHh-cCCCeEEEEcccC
Q psy6208 158 SKLAGESESNLRKAFEEAD-KNSPSIIFIDELD 189 (197)
Q Consensus 158 ~~~~~~~~~~~~~~~~~a~-~~~~~vl~lDeid 189 (197)
.+..+++..+ +...-|||+||+.
T Consensus 93 ---------~l~~l~~~l~~~~~kFIlf~DDLs 116 (249)
T PF05673_consen 93 ---------DLPELLDLLRDRPYKFILFCDDLS 116 (249)
T ss_pred ---------cHHHHHHHHhcCCCCEEEEecCCC
Confidence 2334444433 3345799999965
No 116
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.14 E-value=2.2e-10 Score=99.71 Aligned_cols=57 Identities=21% Similarity=0.352 Sum_probs=47.9
Q ss_pred hhcCCCCcccccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHhCC
Q psy6208 78 EASNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGA 146 (197)
Q Consensus 78 ~~~~~~~~~~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~~~ 146 (197)
....+.+|++++|++..++.+...+... ..+..+||+||+|+|||++|+.+|+.+++
T Consensus 8 ~KyRP~~f~diiGq~~~v~~L~~~i~~~------------rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c 64 (546)
T PRK14957 8 RKYRPQSFAEVAGQQHALNSLVHALETQ------------KVHHAYLFTGTRGVGKTTLGRLLAKCLNC 64 (546)
T ss_pred HHHCcCcHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4466789999999999999999888642 33456899999999999999999998854
No 117
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.13 E-value=7.2e-11 Score=103.01 Aligned_cols=66 Identities=33% Similarity=0.582 Sum_probs=52.9
Q ss_pred HhhcCCCCcccccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHh----------CC
Q psy6208 77 EEASNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANET----------GA 146 (197)
Q Consensus 77 ~~~~~~~~~~~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~----------~~ 146 (197)
.+...+.+|++++|++..++.++..+.. ..+.+++|+||||||||++|+++++.. +.
T Consensus 56 ~~~~rp~~f~~iiGqs~~i~~l~~al~~-------------~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~ 122 (531)
T TIGR02902 56 SEKTRPKSFDEIIGQEEGIKALKAALCG-------------PNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGA 122 (531)
T ss_pred HHhhCcCCHHHeeCcHHHHHHHHHHHhC-------------CCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCC
Confidence 4456678999999999999999866432 346689999999999999999998752 35
Q ss_pred eEEEEechh
Q psy6208 147 FFFLINGPE 155 (197)
Q Consensus 147 ~~~~v~~~~ 155 (197)
+|+.++|..
T Consensus 123 ~fi~id~~~ 131 (531)
T TIGR02902 123 AFVEIDATT 131 (531)
T ss_pred CEEEEcccc
Confidence 788898863
No 118
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.13 E-value=3.8e-10 Score=95.36 Aligned_cols=57 Identities=21% Similarity=0.307 Sum_probs=48.5
Q ss_pred hhcCCCCcccccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHhCC
Q psy6208 78 EASNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGA 146 (197)
Q Consensus 78 ~~~~~~~~~~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~~~ 146 (197)
+...+.+|++|+|++.+++.|..++... ..+..+||+||+|+|||++|+++|+.+.+
T Consensus 8 ~k~RP~~~~eiiGq~~~~~~L~~~~~~~------------~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c 64 (397)
T PRK14955 8 RKYRPKKFADITAQEHITRTIQNSLRMG------------RVGHGYIFSGLRGVGKTTAARVFAKAVNC 64 (397)
T ss_pred HhcCCCcHhhccChHHHHHHHHHHHHhC------------CcceeEEEECCCCCCHHHHHHHHHHHhcC
Confidence 3456789999999999999998888642 34556999999999999999999999865
No 119
>KOG0991|consensus
Probab=99.13 E-value=7.8e-11 Score=90.95 Aligned_cols=103 Identities=22% Similarity=0.312 Sum_probs=72.2
Q ss_pred HHhhcCCCCcccccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHh-CC----eEEE
Q psy6208 76 EEEASNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANET-GA----FFFL 150 (197)
Q Consensus 76 ~~~~~~~~~~~~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~-~~----~~~~ 150 (197)
+-+...+..+.||+|+++.+..+.-+... ..-++++|.||||+|||+.+.++|+++ |. -++.
T Consensus 17 wVeKYrP~~l~dIVGNe~tv~rl~via~~-------------gnmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLE 83 (333)
T KOG0991|consen 17 WVEKYRPSVLQDIVGNEDTVERLSVIAKE-------------GNMPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLE 83 (333)
T ss_pred HHHhhCchHHHHhhCCHHHHHHHHHHHHc-------------CCCCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhh
Confidence 45667788899999999999999877653 345689999999999999999999987 32 3566
Q ss_pred EechhhhhhccCccHHHHHHHHHHHhc----CCCeEEEEcccCccCcc
Q psy6208 151 INGPEIMSKLAGESESNLRKAFEEADK----NSPSIIFIDELDAIAPK 194 (197)
Q Consensus 151 v~~~~~~~~~~~~~~~~~~~~~~~a~~----~~~~vl~lDeid~l~~~ 194 (197)
+|+++-.+-. -....+ ..|...+- ++..|++|||+|++...
T Consensus 84 LNASdeRGID--vVRn~I-K~FAQ~kv~lp~grhKIiILDEADSMT~g 128 (333)
T KOG0991|consen 84 LNASDERGID--VVRNKI-KMFAQKKVTLPPGRHKIIILDEADSMTAG 128 (333)
T ss_pred ccCccccccH--HHHHHH-HHHHHhhccCCCCceeEEEeeccchhhhH
Confidence 6665432211 112222 23333221 34469999999998653
No 120
>PRK08939 primosomal protein DnaI; Reviewed
Probab=99.13 E-value=2.1e-10 Score=93.59 Aligned_cols=73 Identities=25% Similarity=0.485 Sum_probs=53.1
Q ss_pred CCCceEEECCCCCcHHHHHHHHHHHh---CCeEEEEechhhhhhccCccH-HHHHHHHHHHhcCCCeEEEEcccCccCc
Q psy6208 119 PPRGILLYGPPGTGKTLIARAVANET---GAFFFLINGPEIMSKLAGESE-SNLRKAFEEADKNSPSIIFIDELDAIAP 193 (197)
Q Consensus 119 ~~~~ill~G~~GtGKT~la~ala~~~---~~~~~~v~~~~~~~~~~~~~~-~~~~~~~~~a~~~~~~vl~lDeid~l~~ 193 (197)
...+++|+|++|+|||||+.|+|+++ +.++.++..+++...+..... ......++... ..++|+|||++.-..
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~lk~~~~~~~~~~~l~~l~--~~dlLiIDDiG~e~~ 231 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRELKNSISDGSVKEKIDAVK--EAPVLMLDDIGAEQM 231 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHHHHHHhcCcHHHHHHHhc--CCCEEEEecCCCccc
Confidence 45789999999999999999999988 788899998887765532211 11233333332 478999999986543
No 121
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=99.12 E-value=9.8e-11 Score=99.29 Aligned_cols=98 Identities=23% Similarity=0.402 Sum_probs=76.0
Q ss_pred CCcccccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHh---CCeEEEEechhhhhh
Q psy6208 83 VGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANET---GAFFFLINGPEIMSK 159 (197)
Q Consensus 83 ~~~~~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~---~~~~~~v~~~~~~~~ 159 (197)
....+++|.+..+.++.+.+... +....+|||+|++||||..+|++||+.+ +.||+.+||..+...
T Consensus 138 ~~~~~liG~S~am~~l~~~i~kv-----------A~s~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~ 206 (464)
T COG2204 138 SLGGELVGESPAMQQLRRLIAKV-----------APSDASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPEN 206 (464)
T ss_pred cccCCceecCHHHHHHHHHHHHH-----------hCCCCCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCHH
Confidence 35668999999999999998765 4667889999999999999999999988 459999999877543
Q ss_pred -----ccCccHH-------HHHHHHHHHhcCCCeEEEEcccCccCcc
Q psy6208 160 -----LAGESES-------NLRKAFEEADKNSPSIIFIDELDAIAPK 194 (197)
Q Consensus 160 -----~~~~~~~-------~~~~~~~~a~~~~~~vl~lDeid~l~~~ 194 (197)
++|+... ...+.|+.|..+ +||||||..|+..
T Consensus 207 l~ESELFGhekGAFTGA~~~r~G~fE~A~GG---TLfLDEI~~mpl~ 250 (464)
T COG2204 207 LLESELFGHEKGAFTGAITRRIGRFEQANGG---TLFLDEIGEMPLE 250 (464)
T ss_pred HHHHHhhcccccCcCCcccccCcceeEcCCc---eEEeeccccCCHH
Confidence 3343221 123356666555 7999999998754
No 122
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.12 E-value=1.5e-10 Score=97.44 Aligned_cols=103 Identities=20% Similarity=0.311 Sum_probs=69.8
Q ss_pred CcccccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHhCCeE---------------
Q psy6208 84 GYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFF--------------- 148 (197)
Q Consensus 84 ~~~~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~~~~~--------------- 148 (197)
.|++|+|++.+++.+++.+...... +..++...++.+||+||+|+|||++|+++|+.+.+.-
T Consensus 3 ~f~~IiGq~~~~~~L~~~i~~~~~~---~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~ 79 (394)
T PRK07940 3 VWDDLVGQEAVVAELRAAARAARAD---VAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTV 79 (394)
T ss_pred hhhhccChHHHHHHHHHHHHhcccc---ccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHH
Confidence 5889999999999999999864321 1112223567899999999999999999999875431
Q ss_pred --------EEEechhhhhhccCccHHHHHHHHHHHhc----CCCeEEEEcccCccCcc
Q psy6208 149 --------FLINGPEIMSKLAGESESNLRKAFEEADK----NSPSIIFIDELDAIAPK 194 (197)
Q Consensus 149 --------~~v~~~~~~~~~~~~~~~~~~~~~~~a~~----~~~~vl~lDeid~l~~~ 194 (197)
.++.... ..-.-..++.+++.+.. +...|+||||+|.|.+.
T Consensus 80 ~~~~hpD~~~i~~~~-----~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~ 132 (394)
T PRK07940 80 LAGTHPDVRVVAPEG-----LSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTER 132 (394)
T ss_pred hcCCCCCEEEecccc-----ccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCHH
Confidence 1111100 01123456677666543 34569999999999753
No 123
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.11 E-value=2.9e-10 Score=99.77 Aligned_cols=57 Identities=19% Similarity=0.314 Sum_probs=48.3
Q ss_pred hhcCCCCcccccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHhCC
Q psy6208 78 EASNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGA 146 (197)
Q Consensus 78 ~~~~~~~~~~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~~~ 146 (197)
..+.+.+|++|+|++.+++.|+.++... ..++.+||+||+|+|||++|+++|+.+++
T Consensus 5 ~kyRP~~f~eivGq~~i~~~L~~~i~~~------------r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c 61 (584)
T PRK14952 5 RKYRPATFAEVVGQEHVTEPLSSALDAG------------RINHAYLFSGPRGCGKTSSARILARSLNC 61 (584)
T ss_pred HHhCCCcHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 3466789999999999999999998742 33455899999999999999999998864
No 124
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.11 E-value=2.9e-10 Score=103.02 Aligned_cols=101 Identities=21% Similarity=0.336 Sum_probs=72.0
Q ss_pred cccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhh--------
Q psy6208 87 DIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMS-------- 158 (197)
Q Consensus 87 ~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~~~~~~~v~~~~~~~-------- 158 (197)
+..|++++++.+.+++...... +-.....++|+||||+|||++++.+|..++.+++.++......
T Consensus 323 ~~~g~~~vK~~i~~~l~~~~~~-------~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~g~~ 395 (784)
T PRK10787 323 DHYGLERVKDRILEYLAVQSRV-------NKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHR 395 (784)
T ss_pred hccCHHHHHHHHHHHHHHHHhc-------ccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhccch
Confidence 4889999999998887643211 1123456999999999999999999999999998887654321
Q ss_pred -hccCccHHHHHHHHHHHhcCCCeEEEEcccCccCccc
Q psy6208 159 -KLAGESESNLRKAFEEADKNSPSIIFIDELDAIAPKR 195 (197)
Q Consensus 159 -~~~~~~~~~~~~~~~~a~~~~~~vl~lDeid~l~~~r 195 (197)
.+.|.....+...+..+.... .|++|||+|.+.++.
T Consensus 396 ~~~~g~~~G~~~~~l~~~~~~~-~villDEidk~~~~~ 432 (784)
T PRK10787 396 RTYIGSMPGKLIQKMAKVGVKN-PLFLLDEIDKMSSDM 432 (784)
T ss_pred hccCCCCCcHHHHHHHhcCCCC-CEEEEEChhhccccc
Confidence 234444445555555544333 489999999998763
No 125
>KOG2004|consensus
Probab=99.11 E-value=3.1e-10 Score=99.27 Aligned_cols=100 Identities=24% Similarity=0.419 Sum_probs=77.6
Q ss_pred ccccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhh--------
Q psy6208 86 DDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIM-------- 157 (197)
Q Consensus 86 ~~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~~~~~~~v~~~~~~-------- 157 (197)
+|-.|.+++++.+.+++.--.. .|-..+.-++|+||||+|||+++++||..+|+.|+.++...+.
T Consensus 411 eDHYgm~dVKeRILEfiAV~kL-------rgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIkGH 483 (906)
T KOG2004|consen 411 EDHYGMEDVKERILEFIAVGKL-------RGSVQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIKGH 483 (906)
T ss_pred ccccchHHHHHHHHHHHHHHhh-------cccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccHHhhccc
Confidence 4568999999999998863211 1123455688999999999999999999999999998753332
Q ss_pred -hhccCccHHHHHHHHHHHhcCCCeEEEEcccCccCc
Q psy6208 158 -SKLAGESESNLRKAFEEADKNSPSIIFIDELDAIAP 193 (197)
Q Consensus 158 -~~~~~~~~~~~~~~~~~a~~~~~~vl~lDeid~l~~ 193 (197)
..|+|.....+-+.++......| +++|||||.+..
T Consensus 484 RRTYVGAMPGkiIq~LK~v~t~NP-liLiDEvDKlG~ 519 (906)
T KOG2004|consen 484 RRTYVGAMPGKIIQCLKKVKTENP-LILIDEVDKLGS 519 (906)
T ss_pred ceeeeccCChHHHHHHHhhCCCCc-eEEeehhhhhCC
Confidence 34778887888888888777655 899999999984
No 126
>PRK06835 DNA replication protein DnaC; Validated
Probab=99.10 E-value=6.5e-10 Score=91.43 Aligned_cols=72 Identities=24% Similarity=0.436 Sum_probs=51.8
Q ss_pred CCceEEECCCCCcHHHHHHHHHHHh---CCeEEEEechhhhhhccCc---cHHHHHHHHHHHhcCCCeEEEEcccCccCc
Q psy6208 120 PRGILLYGPPGTGKTLIARAVANET---GAFFFLINGPEIMSKLAGE---SESNLRKAFEEADKNSPSIIFIDELDAIAP 193 (197)
Q Consensus 120 ~~~ill~G~~GtGKT~la~ala~~~---~~~~~~v~~~~~~~~~~~~---~~~~~~~~~~~a~~~~~~vl~lDeid~l~~ 193 (197)
..+++|+|++|+|||||+.++|+++ +..+++++..++...+... ........++... ..++|+|||++....
T Consensus 183 ~~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~~~~~~~~~~~~~l~--~~DLLIIDDlG~e~~ 260 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRFNNDKELEEVYDLLI--NCDLLIIDDLGTEKI 260 (329)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHhccchhHHHHHHHhc--cCCEEEEeccCCCCC
Confidence 4789999999999999999999987 7899999998887654211 0111111133322 468999999987654
No 127
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.10 E-value=4e-10 Score=101.95 Aligned_cols=98 Identities=26% Similarity=0.424 Sum_probs=69.1
Q ss_pred cccCcHHHHHHHHHHHHhcccChhhHhhhCC----CCCCceEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhhh---
Q psy6208 87 DIGGCRKQLAQIKEMVELPLRHPSLFKAIGV----KPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSK--- 159 (197)
Q Consensus 87 ~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~----~~~~~ill~G~~GtGKT~la~ala~~~~~~~~~v~~~~~~~~--- 159 (197)
.++|++.+++.+.+.+... ..|. .+...++|+||+|||||++|+++|..++.+++.++++++...
T Consensus 455 ~v~GQ~~ai~~l~~~i~~~--------~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~~~~~~ 526 (731)
T TIGR02639 455 KIFGQDEAIDSLVSSIKRS--------RAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEYMEKHTV 526 (731)
T ss_pred ceeCcHHHHHHHHHHHHHH--------hcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchhhhcccH
Confidence 4788888888888877642 1111 223458999999999999999999999999999998876432
Q ss_pred --cc-------CccHHHHHHHHHHHhcCCCeEEEEcccCccCcc
Q psy6208 160 --LA-------GESESNLRKAFEEADKNSPSIIFIDELDAIAPK 194 (197)
Q Consensus 160 --~~-------~~~~~~~~~~~~~a~~~~~~vl~lDeid~l~~~ 194 (197)
+. |..+. ..+.+..+....+||+|||+|.+.+.
T Consensus 527 ~~lig~~~gyvg~~~~--~~l~~~~~~~p~~VvllDEieka~~~ 568 (731)
T TIGR02639 527 SRLIGAPPGYVGFEQG--GLLTEAVRKHPHCVLLLDEIEKAHPD 568 (731)
T ss_pred HHHhcCCCCCcccchh--hHHHHHHHhCCCeEEEEechhhcCHH
Confidence 12 21111 12333444556789999999988764
No 128
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.09 E-value=2.2e-10 Score=91.93 Aligned_cols=103 Identities=32% Similarity=0.465 Sum_probs=72.4
Q ss_pred ccCcHHHHHHHHHHHHhcccChhhHhhhCC--------CCCCceEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhh-
Q psy6208 88 IGGCRKQLAQIKEMVELPLRHPSLFKAIGV--------KPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMS- 158 (197)
Q Consensus 88 i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~--------~~~~~ill~G~~GtGKT~la~ala~~~~~~~~~v~~~~~~~- 158 (197)
++|++.+++.+.-++... |.++.. -..++||+.||+|||||.||+.+|+.++.||..-++..+..
T Consensus 63 VIGQe~AKKvLsVAVYNH------YKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtLTEA 136 (408)
T COG1219 63 VIGQEQAKKVLSVAVYNH------YKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTLTEA 136 (408)
T ss_pred eecchhhhceeeeeehhH------HHHHhccCCCCceeeeeccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccchhhc
Confidence 677777776665444332 222211 13467999999999999999999999999999999888764
Q ss_pred hccCcc-HHHHHHHHHHHh----cCCCeEEEEcccCccCcccC
Q psy6208 159 KLAGES-ESNLRKAFEEAD----KNSPSIIFIDELDAIAPKRE 196 (197)
Q Consensus 159 ~~~~~~-~~~~~~~~~~a~----~~~~~vl~lDeid~l~~~r~ 196 (197)
.|+|+. ++.+..++..+. +....|++|||||.++.+.+
T Consensus 137 GYVGEDVENillkLlqaadydV~rAerGIIyIDEIDKIarkSe 179 (408)
T COG1219 137 GYVGEDVENILLKLLQAADYDVERAERGIIYIDEIDKIARKSE 179 (408)
T ss_pred cccchhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhccCC
Confidence 466664 344555554432 23456999999999988753
No 129
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.09 E-value=5.1e-10 Score=98.26 Aligned_cols=58 Identities=21% Similarity=0.287 Sum_probs=48.9
Q ss_pred HhhcCCCCcccccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHhCC
Q psy6208 77 EEASNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGA 146 (197)
Q Consensus 77 ~~~~~~~~~~~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~~~ 146 (197)
.....+.+|++|+|++.+++.|.+++..- .....+||+||+|+|||++|+.+|+.+.+
T Consensus 7 a~KyRP~sf~dIiGQe~v~~~L~~ai~~~------------ri~ha~Lf~GPpG~GKTtiArilAk~L~C 64 (624)
T PRK14959 7 TARYRPQTFAEVAGQETVKAILSRAAQEN------------RVAPAYLFSGTRGVGKTTIARIFAKALNC 64 (624)
T ss_pred HHHhCCCCHHHhcCCHHHHHHHHHHHHcC------------CCCceEEEECCCCCCHHHHHHHHHHhccc
Confidence 34566889999999999999999988642 23567999999999999999999999865
No 130
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.09 E-value=3.1e-10 Score=94.91 Aligned_cols=105 Identities=19% Similarity=0.299 Sum_probs=70.6
Q ss_pred HhhcCCCCcccccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHhCCeEEEEechhh
Q psy6208 77 EEASNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEI 156 (197)
Q Consensus 77 ~~~~~~~~~~~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~~~~~~~v~~~~~ 156 (197)
.+...+.+|++++|++..++.+.+.+... ..+++++||||+|+|||++++++++.+.+......+..+
T Consensus 8 ~~k~rP~~~~~iig~~~~~~~l~~~i~~~------------~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~ 75 (367)
T PRK14970 8 ARKYRPQTFDDVVGQSHITNTLLNAIENN------------HLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDF 75 (367)
T ss_pred HHHHCCCcHHhcCCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCC
Confidence 44567889999999999999999988642 345689999999999999999999987542111000000
Q ss_pred ------hhhccCccHHHHHHHHHHHhc----CCCeEEEEcccCccCc
Q psy6208 157 ------MSKLAGESESNLRKAFEEADK----NSPSIIFIDELDAIAP 193 (197)
Q Consensus 157 ------~~~~~~~~~~~~~~~~~~a~~----~~~~vl~lDeid~l~~ 193 (197)
.+.........++.+++.+.. +.+.+++|||+|.+..
T Consensus 76 ~~~~~~l~~~~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~ 122 (367)
T PRK14970 76 SFNIFELDAASNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSS 122 (367)
T ss_pred CcceEEeccccCCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcCH
Confidence 000011123455566655432 3457999999998864
No 131
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=99.09 E-value=8e-11 Score=88.87 Aligned_cols=74 Identities=27% Similarity=0.545 Sum_probs=50.4
Q ss_pred CCCCceEEECCCCCcHHHHHHHHHHHh---CCeEEEEechhhhhhccCcc-HHHHHHHHHHHhcCCCeEEEEcccCccCc
Q psy6208 118 KPPRGILLYGPPGTGKTLIARAVANET---GAFFFLINGPEIMSKLAGES-ESNLRKAFEEADKNSPSIIFIDELDAIAP 193 (197)
Q Consensus 118 ~~~~~ill~G~~GtGKT~la~ala~~~---~~~~~~v~~~~~~~~~~~~~-~~~~~~~~~~a~~~~~~vl~lDeid~l~~ 193 (197)
....+++|+|++|+||||||.++++++ +.++.+++.++++..+.... .......+.... .+++|+|||+.....
T Consensus 45 ~~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l~--~~dlLilDDlG~~~~ 122 (178)
T PF01695_consen 45 ENGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQSRSDGSYEELLKRLK--RVDLLILDDLGYEPL 122 (178)
T ss_dssp SC--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCHCCTTHCHHHHHHH--TSSCEEEETCTSS--
T ss_pred ccCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccccccccchhhhcCccc--cccEecccccceeee
Confidence 456789999999999999999999876 88999999999887654221 111223344433 367999999986543
No 132
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=99.08 E-value=2.3e-10 Score=100.21 Aligned_cols=100 Identities=27% Similarity=0.393 Sum_probs=72.7
Q ss_pred CCCcccccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHh---CCeEEEEechhhhh
Q psy6208 82 AVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANET---GAFFFLINGPEIMS 158 (197)
Q Consensus 82 ~~~~~~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~---~~~~~~v~~~~~~~ 158 (197)
..++++++|.+..++++.+.+... +....+|+|+|++||||+++|++|+... +.+|+.++|..+..
T Consensus 192 ~~~~~~liG~s~~~~~~~~~~~~~-----------a~~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~~ 260 (534)
T TIGR01817 192 SGKEDGIIGKSPAMRQVVDQARVV-----------ARSNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALSE 260 (534)
T ss_pred cCccCceEECCHHHHHHHHHHHHH-----------hCcCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCCH
Confidence 367889999999999999988764 3456789999999999999999999886 56999999987632
Q ss_pred h-----ccCccHHH-------HHHHHHHHhcCCCeEEEEcccCccCccc
Q psy6208 159 K-----LAGESESN-------LRKAFEEADKNSPSIIFIDELDAIAPKR 195 (197)
Q Consensus 159 ~-----~~~~~~~~-------~~~~~~~a~~~~~~vl~lDeid~l~~~r 195 (197)
. ++|..... ..+.++.+ ...+||||||+.|++.-
T Consensus 261 ~~~~~~lfg~~~~~~~~~~~~~~g~~~~a---~~GtL~ldei~~L~~~~ 306 (534)
T TIGR01817 261 TLLESELFGHEKGAFTGAIAQRKGRFELA---DGGTLFLDEIGEISPAF 306 (534)
T ss_pred HHHHHHHcCCCCCccCCCCcCCCCccccc---CCCeEEEechhhCCHHH
Confidence 2 11211100 01112222 24589999999998753
No 133
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.08 E-value=4.9e-10 Score=97.95 Aligned_cols=58 Identities=21% Similarity=0.232 Sum_probs=48.8
Q ss_pred HhhcCCCCcccccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHhCC
Q psy6208 77 EEASNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGA 146 (197)
Q Consensus 77 ~~~~~~~~~~~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~~~ 146 (197)
.....+.+|++++|++.+++.+.+++... ..++.+||+||+|+|||++|+++|+.+.+
T Consensus 7 ~~KyRP~~F~dIIGQe~iv~~L~~aI~~~------------rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C 64 (605)
T PRK05896 7 YRKYRPHNFKQIIGQELIKKILVNAILNN------------KLTHAYIFSGPRGIGKTSIAKIFAKAINC 64 (605)
T ss_pred HHHhCCCCHHHhcCcHHHHHHHHHHHHcC------------CCCceEEEECCCCCCHHHHHHHHHHHhcC
Confidence 44567889999999999999999887542 34567999999999999999999998853
No 134
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.08 E-value=4.9e-10 Score=89.63 Aligned_cols=38 Identities=42% Similarity=0.540 Sum_probs=33.7
Q ss_pred CCCCceEEECCCCCcHHHHHHHHHHHhCCeEEEEechh
Q psy6208 118 KPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPE 155 (197)
Q Consensus 118 ~~~~~ill~G~~GtGKT~la~ala~~~~~~~~~v~~~~ 155 (197)
..+.+++|.||||||||++|+++|+.++.+++.++|..
T Consensus 19 ~~g~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~ 56 (262)
T TIGR02640 19 KSGYPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDA 56 (262)
T ss_pred hcCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCc
Confidence 34568999999999999999999999999999998753
No 135
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.07 E-value=9.4e-10 Score=98.86 Aligned_cols=110 Identities=24% Similarity=0.301 Sum_probs=74.8
Q ss_pred hhcCCCCcccccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHh----------CCe
Q psy6208 78 EASNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANET----------GAF 147 (197)
Q Consensus 78 ~~~~~~~~~~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~----------~~~ 147 (197)
.+.+.+..+.|.+.++++++|..++...+.. ..++..++|+|+||||||++++.+..++ ...
T Consensus 747 vL~~DYVPD~LPhREeEIeeLasfL~paIkg--------sgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~ 818 (1164)
T PTZ00112 747 MMQLDVVPKYLPCREKEIKEVHGFLESGIKQ--------SGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFN 818 (1164)
T ss_pred HcCcccCCCcCCChHHHHHHHHHHHHHHHhc--------CCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCce
Confidence 3456667788999999999999998765432 1223335799999999999999997765 256
Q ss_pred EEEEechhhhhh----------cc------C-ccHHHHHHHHHHHh--cCCCeEEEEcccCccCccc
Q psy6208 148 FFLINGPEIMSK----------LA------G-ESESNLRKAFEEAD--KNSPSIIFIDELDAIAPKR 195 (197)
Q Consensus 148 ~~~v~~~~~~~~----------~~------~-~~~~~~~~~~~~a~--~~~~~vl~lDeid~l~~~r 195 (197)
+++++|..+... +. + .....+..+|.... .....||+|||||.|..+.
T Consensus 819 vVYINCm~Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~ 885 (1164)
T PTZ00112 819 VFEINGMNVVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKT 885 (1164)
T ss_pred EEEEeCCccCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccH
Confidence 789999543211 10 1 11233445555432 2335799999999998753
No 136
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=99.07 E-value=3.2e-10 Score=93.46 Aligned_cols=94 Identities=26% Similarity=0.334 Sum_probs=66.4
Q ss_pred ccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHh---CCeEEEEechhhhhhc----
Q psy6208 88 IGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANET---GAFFFLINGPEIMSKL---- 160 (197)
Q Consensus 88 i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~---~~~~~~v~~~~~~~~~---- 160 (197)
++|.+..++++.+.+... +....+|||+|++||||+++|++|+... +.+|+.++|..+....
T Consensus 1 liG~S~~m~~~~~~~~~~-----------a~~~~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~~~l~~~ 69 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRL-----------APLDRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSENLLDSE 69 (329)
T ss_pred CCcCCHHHHHHHHHHHHH-----------hCCCCCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCChHHHHHH
Confidence 467788888888877654 3556789999999999999999999876 4699999998663221
Q ss_pred -cCccHH-------HHHHHHHHHhcCCCeEEEEcccCccCccc
Q psy6208 161 -AGESES-------NLRKAFEEADKNSPSIIFIDELDAIAPKR 195 (197)
Q Consensus 161 -~~~~~~-------~~~~~~~~a~~~~~~vl~lDeid~l~~~r 195 (197)
+|.... ...+.|+.+. ..+||||||+.|+..-
T Consensus 70 lfG~~~g~~~ga~~~~~G~~~~a~---gGtL~Ldei~~L~~~~ 109 (329)
T TIGR02974 70 LFGHEAGAFTGAQKRHQGRFERAD---GGTLFLDELATASLLV 109 (329)
T ss_pred HhccccccccCcccccCCchhhCC---CCEEEeCChHhCCHHH
Confidence 121110 1112344443 4589999999998753
No 137
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.07 E-value=4.6e-10 Score=101.94 Aligned_cols=57 Identities=19% Similarity=0.299 Sum_probs=48.7
Q ss_pred hhcCCCCcccccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHhCC
Q psy6208 78 EASNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGA 146 (197)
Q Consensus 78 ~~~~~~~~~~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~~~ 146 (197)
.++.+.+|++|+|++.+++.|.+++..- ..++.+||+||+|+|||++|+.|++.+++
T Consensus 7 ~KyRP~~f~eiiGqe~v~~~L~~~i~~~------------ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C 63 (824)
T PRK07764 7 RRYRPATFAEVIGQEHVTEPLSTALDSG------------RINHAYLFSGPRGCGKTSSARILARSLNC 63 (824)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHHhC------------CCCceEEEECCCCCCHHHHHHHHHHHhCc
Confidence 4567889999999999999999988642 33456899999999999999999999865
No 138
>PRK06526 transposase; Provisional
Probab=99.07 E-value=1.5e-10 Score=92.08 Aligned_cols=75 Identities=21% Similarity=0.413 Sum_probs=52.6
Q ss_pred CCCCceEEECCCCCcHHHHHHHHHHHh---CCeEEEEechhhhhhccCcc-HHHHHHHHHHHhcCCCeEEEEcccCccCc
Q psy6208 118 KPPRGILLYGPPGTGKTLIARAVANET---GAFFFLINGPEIMSKLAGES-ESNLRKAFEEADKNSPSIIFIDELDAIAP 193 (197)
Q Consensus 118 ~~~~~ill~G~~GtGKT~la~ala~~~---~~~~~~v~~~~~~~~~~~~~-~~~~~~~~~~a~~~~~~vl~lDeid~l~~ 193 (197)
....+++|+||||||||||+.+++.+. |.++.++++.++...+.... .......+... ..+++|+|||++.+..
T Consensus 96 ~~~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~~~~~~~~~~~l~~l--~~~dlLIIDD~g~~~~ 173 (254)
T PRK06526 96 TGKENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAHHAGRLQAELVKL--GRYPLLIVDEVGYIPF 173 (254)
T ss_pred hcCceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHHHHhcCcHHHHHHHh--ccCCEEEEcccccCCC
Confidence 345689999999999999999998875 77888888887766542111 11122223322 3478999999998765
Q ss_pred c
Q psy6208 194 K 194 (197)
Q Consensus 194 ~ 194 (197)
.
T Consensus 174 ~ 174 (254)
T PRK06526 174 E 174 (254)
T ss_pred C
Confidence 4
No 139
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.07 E-value=1.7e-10 Score=102.80 Aligned_cols=102 Identities=24% Similarity=0.362 Sum_probs=72.2
Q ss_pred ccccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHhC---CeEEEEechhhhhh---
Q psy6208 86 DDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANETG---AFFFLINGPEIMSK--- 159 (197)
Q Consensus 86 ~~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~~---~~~~~v~~~~~~~~--- 159 (197)
..++|++.++..+.+.+...-..-. . .-+|...+||.||+|+|||.||+++|..+. ..++.++.++++.+
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~---d-p~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~EkHsV 566 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLG---D-PNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEKHSV 566 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCC---C-CCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHHHHHH
Confidence 3589999999999999875311100 0 013334578999999999999999999994 78999999998643
Q ss_pred ---------ccCccHHHHHHHHHHHhcCCCeEEEEcccCccCc
Q psy6208 160 ---------LAGESESNLRKAFEEADKNSPSIIFIDELDAIAP 193 (197)
Q Consensus 160 ---------~~~~~~~~~~~~~~~a~~~~~~vl~lDeid~l~~ 193 (197)
|+|..+. ..+.+..++...+||+||||+.-.|
T Consensus 567 SrLIGaPPGYVGyeeG--G~LTEaVRr~PySViLlDEIEKAHp 607 (786)
T COG0542 567 SRLIGAPPGYVGYEEG--GQLTEAVRRKPYSVILLDEIEKAHP 607 (786)
T ss_pred HHHhCCCCCCceeccc--cchhHhhhcCCCeEEEechhhhcCH
Confidence 3333332 1233444555578999999997655
No 140
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=99.07 E-value=2.7e-10 Score=93.87 Aligned_cols=97 Identities=26% Similarity=0.341 Sum_probs=70.6
Q ss_pred cccccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHh---CCeEEEEechhhhhh--
Q psy6208 85 YDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANET---GAFFFLINGPEIMSK-- 159 (197)
Q Consensus 85 ~~~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~---~~~~~~v~~~~~~~~-- 159 (197)
+++++|.+..++++.+.+... +....+|+|+|++||||+++|++++... +.+|+.++|..+...
T Consensus 5 ~~~liG~S~~~~~~~~~i~~~-----------a~~~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~~~~ 73 (326)
T PRK11608 5 KDNLLGEANSFLEVLEQVSRL-----------APLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLL 73 (326)
T ss_pred cCccEECCHHHHHHHHHHHHH-----------hCCCCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCHHHH
Confidence 567999999999999988765 3556789999999999999999999876 468999999876322
Q ss_pred ---ccCccHH-------HHHHHHHHHhcCCCeEEEEcccCccCccc
Q psy6208 160 ---LAGESES-------NLRKAFEEADKNSPSIIFIDELDAIAPKR 195 (197)
Q Consensus 160 ---~~~~~~~-------~~~~~~~~a~~~~~~vl~lDeid~l~~~r 195 (197)
++|.... ...+.++.+. ..+|||||++.|+..-
T Consensus 74 ~~~lfg~~~~~~~g~~~~~~g~l~~a~---gGtL~l~~i~~L~~~~ 116 (326)
T PRK11608 74 DSELFGHEAGAFTGAQKRHPGRFERAD---GGTLFLDELATAPMLV 116 (326)
T ss_pred HHHHccccccccCCcccccCCchhccC---CCeEEeCChhhCCHHH
Confidence 2221110 0112344433 3589999999998753
No 141
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.06 E-value=5.8e-10 Score=102.02 Aligned_cols=103 Identities=26% Similarity=0.320 Sum_probs=69.8
Q ss_pred ccccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHh---CCeEEEEechhhhhh---
Q psy6208 86 DDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANET---GAFFFLINGPEIMSK--- 159 (197)
Q Consensus 86 ~~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~---~~~~~~v~~~~~~~~--- 159 (197)
..++|++.+++.+.+.+......-. . .-++...++|+||+|+|||++|+++|..+ ...++.++++++...
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~---~-~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse~~~~~~~ 641 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLE---D-PRKPLGVFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQEAHTV 641 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCC---C-CCCCceEEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHHhhhhhhh
Confidence 4589999999999998875311100 0 01222348999999999999999999988 457888998876432
Q ss_pred ---------ccCccHHHHHHHHHHHhcCCCeEEEEcccCccCcc
Q psy6208 160 ---------LAGESESNLRKAFEEADKNSPSIIFIDELDAIAPK 194 (197)
Q Consensus 160 ---------~~~~~~~~~~~~~~~a~~~~~~vl~lDeid~l~~~ 194 (197)
|+|..+.. .+.+..++...+||+||||+.+.+.
T Consensus 642 ~~l~g~~~gyvg~~~~g--~L~~~v~~~p~svvllDEieka~~~ 683 (852)
T TIGR03345 642 SRLKGSPPGYVGYGEGG--VLTEAVRRKPYSVVLLDEVEKAHPD 683 (852)
T ss_pred ccccCCCCCcccccccc--hHHHHHHhCCCcEEEEechhhcCHH
Confidence 22222211 1233444566799999999987653
No 142
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.06 E-value=1e-09 Score=96.72 Aligned_cols=98 Identities=20% Similarity=0.345 Sum_probs=69.1
Q ss_pred hhcCCCCcccccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHhCCe----------
Q psy6208 78 EASNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAF---------- 147 (197)
Q Consensus 78 ~~~~~~~~~~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~~~~---------- 147 (197)
..+.+.+|++|+|++.+++.|.+.+..- ..++.+||+||+|+|||++|+++++.+++.
T Consensus 8 ~k~RP~~f~~iiGq~~v~~~L~~~i~~~------------~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~ 75 (576)
T PRK14965 8 RKYRPQTFSDLTGQEHVSRTLQNAIDTG------------RVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNV 75 (576)
T ss_pred HHhCCCCHHHccCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCc
Confidence 3466789999999999999999988642 345568999999999999999999998542
Q ss_pred --------------EEEEechhhhhhccCccHHHHHHHHHHHhc----CCCeEEEEcccCccCc
Q psy6208 148 --------------FFLINGPEIMSKLAGESESNLRKAFEEADK----NSPSIIFIDELDAIAP 193 (197)
Q Consensus 148 --------------~~~v~~~~~~~~~~~~~~~~~~~~~~~a~~----~~~~vl~lDeid~l~~ 193 (197)
++.+++.. ...-..++.+.+.+.. ....|+||||+|.|..
T Consensus 76 c~~c~~i~~g~~~d~~eid~~s------~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~ 133 (576)
T PRK14965 76 CPPCVEITEGRSVDVFEIDGAS------NTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLST 133 (576)
T ss_pred cHHHHHHhcCCCCCeeeeeccC------ccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCH
Confidence 12222111 1122345555554432 3356999999999875
No 143
>PRK08116 hypothetical protein; Validated
Probab=99.06 E-value=1e-09 Score=87.97 Aligned_cols=70 Identities=27% Similarity=0.536 Sum_probs=49.8
Q ss_pred CCceEEECCCCCcHHHHHHHHHHHh---CCeEEEEechhhhhhccCc----cHHHHHHHHHHHhcCCCeEEEEcccCcc
Q psy6208 120 PRGILLYGPPGTGKTLIARAVANET---GAFFFLINGPEIMSKLAGE----SESNLRKAFEEADKNSPSIIFIDELDAI 191 (197)
Q Consensus 120 ~~~ill~G~~GtGKT~la~ala~~~---~~~~~~v~~~~~~~~~~~~----~~~~~~~~~~~a~~~~~~vl~lDeid~l 191 (197)
+.+++|+|++|+||||||.++++++ +.++++++.+++...+... .......+++... ..++|+|||++..
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~l~--~~dlLviDDlg~e 190 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRSLV--NADLLILDDLGAE 190 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhccccccHHHHHHHhc--CCCEEEEecccCC
Confidence 4579999999999999999999986 7889999988876654211 1112223333332 3579999999653
No 144
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.06 E-value=1.2e-09 Score=95.82 Aligned_cols=104 Identities=18% Similarity=0.259 Sum_probs=70.1
Q ss_pred hhcCCCCcccccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHhCCeE-------EE
Q psy6208 78 EASNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFF-------FL 150 (197)
Q Consensus 78 ~~~~~~~~~~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~~~~~-------~~ 150 (197)
..+.+.+|++++|++...+.+++.+... ..++.+||+||+|+|||++|+.+++.+++.- -.
T Consensus 8 ~k~rP~~f~~viGq~~v~~~L~~~i~~~------------~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~ 75 (559)
T PRK05563 8 RKWRPQTFEDVVGQEHITKTLKNAIKQG------------KISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNE 75 (559)
T ss_pred HHhCCCcHHhccCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCc
Confidence 3456789999999999999999998752 3456689999999999999999999875421 00
Q ss_pred E-echhhhhh----------ccCccHHHHHHHHHHHh----cCCCeEEEEcccCccCc
Q psy6208 151 I-NGPEIMSK----------LAGESESNLRKAFEEAD----KNSPSIIFIDELDAIAP 193 (197)
Q Consensus 151 v-~~~~~~~~----------~~~~~~~~~~~~~~~a~----~~~~~vl~lDeid~l~~ 193 (197)
. +|..+... ..+..-..++.+.+.+. .+...|+||||+|.|..
T Consensus 76 C~~C~~i~~g~~~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~ 133 (559)
T PRK05563 76 CEICKAITNGSLMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLST 133 (559)
T ss_pred cHHHHHHhcCCCCCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCH
Confidence 0 11111110 00122344566655543 23457999999999864
No 145
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=99.06 E-value=8.4e-11 Score=98.08 Aligned_cols=101 Identities=26% Similarity=0.427 Sum_probs=76.8
Q ss_pred CCCCcccccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHh----CCeEEEEechhh
Q psy6208 81 NAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANET----GAFFFLINGPEI 156 (197)
Q Consensus 81 ~~~~~~~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~----~~~~~~v~~~~~ 156 (197)
....+++++|.+...+++.+.+... .....++||.|++||||+.+|++|+... +.||+.+||..+
T Consensus 73 ~~~~~~~LIG~~~~~~~~~eqik~~-----------ap~~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~ 141 (403)
T COG1221 73 KSEALDDLIGESPSLQELREQIKAY-----------APSGLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAY 141 (403)
T ss_pred cchhhhhhhccCHHHHHHHHHHHhh-----------CCCCCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHh
Confidence 3556788999999999998888763 3567789999999999999999998554 568999999887
Q ss_pred hhhc-----cCc-------cHHHHHHHHHHHhcCCCeEEEEcccCccCccc
Q psy6208 157 MSKL-----AGE-------SESNLRKAFEEADKNSPSIIFIDELDAIAPKR 195 (197)
Q Consensus 157 ~~~~-----~~~-------~~~~~~~~~~~a~~~~~~vl~lDeid~l~~~r 195 (197)
.... +|. ......++|+.|..+ +||+|||+.|++.-
T Consensus 142 ~en~~~~eLFG~~kGaftGa~~~k~Glfe~A~GG---tLfLDEI~~LP~~~ 189 (403)
T COG1221 142 SENLQEAELFGHEKGAFTGAQGGKAGLFEQANGG---TLFLDEIHRLPPEG 189 (403)
T ss_pred CcCHHHHHHhccccceeecccCCcCchheecCCC---EEehhhhhhCCHhH
Confidence 5432 221 122334566666655 79999999998864
No 146
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.05 E-value=1.8e-09 Score=89.70 Aligned_cols=98 Identities=20% Similarity=0.355 Sum_probs=68.4
Q ss_pred hhcCCCCcccccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHhCCe----------
Q psy6208 78 EASNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAF---------- 147 (197)
Q Consensus 78 ~~~~~~~~~~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~~~~---------- 147 (197)
+...+.+|++++|++..++.+.+.+... ..++.+||+||||+|||++++++++.+.+.
T Consensus 6 ~~~rp~~~~~iig~~~~~~~l~~~~~~~------------~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~ 73 (355)
T TIGR02397 6 RKYRPQTFEDVIGQEHIVQTLKNAIKNG------------RIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNE 73 (355)
T ss_pred HHhCCCcHhhccCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCC
Confidence 4456789999999999999999888642 345578999999999999999999887432
Q ss_pred --------------EEEEechhhhhhccCccHHHHHHHHHHHhc----CCCeEEEEcccCccCc
Q psy6208 148 --------------FFLINGPEIMSKLAGESESNLRKAFEEADK----NSPSIIFIDELDAIAP 193 (197)
Q Consensus 148 --------------~~~v~~~~~~~~~~~~~~~~~~~~~~~a~~----~~~~vl~lDeid~l~~ 193 (197)
++.++... ......++.+++.+.. +...+++|||+|.+..
T Consensus 74 c~~c~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~~ 131 (355)
T TIGR02397 74 CESCKEINSGSSLDVIEIDAAS------NNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLSK 131 (355)
T ss_pred CHHHHHHhcCCCCCEEEeeccc------cCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcCH
Confidence 12222110 1122345556655433 2346999999998854
No 147
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.05 E-value=9.1e-10 Score=90.02 Aligned_cols=99 Identities=31% Similarity=0.390 Sum_probs=66.3
Q ss_pred HHhhcCCCCcccccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHhC-----CeEEE
Q psy6208 76 EEEASNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANETG-----AFFFL 150 (197)
Q Consensus 76 ~~~~~~~~~~~~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~~-----~~~~~ 150 (197)
+.+...+.+|+++.|++.+++.+..++.. ...++++|+||+|+|||++++++++++. ..++.
T Consensus 7 w~~kyrP~~~~~~~g~~~~~~~l~~~i~~-------------~~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~ 73 (319)
T PRK00440 7 WVEKYRPRTLDEIVGQEEIVERLKSYVKE-------------KNMPHLLFAGPPGTGKTTAALALARELYGEDWRENFLE 73 (319)
T ss_pred cchhhCCCcHHHhcCcHHHHHHHHHHHhC-------------CCCCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEE
Confidence 34556678999999999999999988864 2234689999999999999999999872 23444
Q ss_pred EechhhhhhccCccHHHHHHHHHH-Hh-----cCCCeEEEEcccCccCc
Q psy6208 151 INGPEIMSKLAGESESNLRKAFEE-AD-----KNSPSIIFIDELDAIAP 193 (197)
Q Consensus 151 v~~~~~~~~~~~~~~~~~~~~~~~-a~-----~~~~~vl~lDeid~l~~ 193 (197)
+++++.. ....+...+.. +. ...+.+|+|||+|.+..
T Consensus 74 ~~~~~~~------~~~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l~~ 116 (319)
T PRK00440 74 LNASDER------GIDVIRNKIKEFARTAPVGGAPFKIIFLDEADNLTS 116 (319)
T ss_pred ecccccc------chHHHHHHHHHHHhcCCCCCCCceEEEEeCcccCCH
Confidence 4433211 11111111111 11 12356999999999865
No 148
>PHA02244 ATPase-like protein
Probab=99.04 E-value=1.2e-09 Score=90.24 Aligned_cols=76 Identities=30% Similarity=0.438 Sum_probs=49.7
Q ss_pred CCCCceEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhhhccCc--cHHHHH-HHHHHHhcCCCeEEEEcccCccCcc
Q psy6208 118 KPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGE--SESNLR-KAFEEADKNSPSIIFIDELDAIAPK 194 (197)
Q Consensus 118 ~~~~~ill~G~~GtGKT~la~ala~~~~~~~~~v~~~~~~~~~~~~--~~~~~~-~~~~~a~~~~~~vl~lDeid~l~~~ 194 (197)
..+.+++|+||||||||++|+++|..++.+++.++...-.....+. ....+. .-+-.+.+ ...+|+|||++.+.++
T Consensus 117 ~~~~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l~d~~~L~G~i~~~g~~~dgpLl~A~~-~GgvLiLDEId~a~p~ 195 (383)
T PHA02244 117 NANIPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIMDEFELKGFIDANGKFHETPFYEAFK-KGGLFFIDEIDASIPE 195 (383)
T ss_pred hcCCCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecChHHHhhcccccccccccchHHHHHhh-cCCEEEEeCcCcCCHH
Confidence 4466899999999999999999999999999998742111111110 000111 12222222 3579999999987654
No 149
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.04 E-value=1.5e-09 Score=95.85 Aligned_cols=57 Identities=21% Similarity=0.316 Sum_probs=48.9
Q ss_pred hhcCCCCcccccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHhCC
Q psy6208 78 EASNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGA 146 (197)
Q Consensus 78 ~~~~~~~~~~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~~~ 146 (197)
....+.+|++|+|++.+++.+++.+..- .-+..+||+||+|+|||++|+.+|+.+.+
T Consensus 8 ~kyRP~~f~eivGQe~i~~~L~~~i~~~------------ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c 64 (620)
T PRK14954 8 RKYRPSKFADITAQEHITHTIQNSLRMD------------RVGHGYIFSGLRGVGKTTAARVFAKAVNC 64 (620)
T ss_pred HHHCCCCHHHhcCcHHHHHHHHHHHHcC------------CCCeeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3466789999999999999999987642 34567999999999999999999999866
No 150
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.04 E-value=2.2e-09 Score=89.51 Aligned_cols=107 Identities=26% Similarity=0.449 Sum_probs=75.5
Q ss_pred cCCCCcccccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHhCCe-----EEEEech
Q psy6208 80 SNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAF-----FFLINGP 154 (197)
Q Consensus 80 ~~~~~~~~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~~~~-----~~~v~~~ 154 (197)
.+.+..+.+.+.+.+++++...+...+.. ..+.+++++|+||||||..++.++.++... ++++||.
T Consensus 11 ~~~~iP~~l~~Re~ei~~l~~~l~~~~~~---------~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~ 81 (366)
T COG1474 11 LEDYIPEELPHREEEINQLASFLAPALRG---------ERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCL 81 (366)
T ss_pred CCCCCcccccccHHHHHHHHHHHHHHhcC---------CCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeee
Confidence 34555667999999999999998766543 445679999999999999999999988333 8999996
Q ss_pred hhhhhc---------------cCccHH-HHHHHHHHHh-cCCCeEEEEcccCccCccc
Q psy6208 155 EIMSKL---------------AGESES-NLRKAFEEAD-KNSPSIIFIDELDAIAPKR 195 (197)
Q Consensus 155 ~~~~~~---------------~~~~~~-~~~~~~~~a~-~~~~~vl~lDeid~l~~~r 195 (197)
...+.+ .|.... ....+++... ....-||+|||+|.|..+.
T Consensus 82 ~~~t~~~i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~ 139 (366)
T COG1474 82 ELRTPYQVLSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKD 139 (366)
T ss_pred eCCCHHHHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhcccc
Confidence 654321 122222 2223333322 2456799999999998764
No 151
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=99.04 E-value=3.3e-10 Score=101.90 Aligned_cols=98 Identities=28% Similarity=0.418 Sum_probs=72.5
Q ss_pred CCcccccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHh---CCeEEEEechhhhhh
Q psy6208 83 VGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANET---GAFFFLINGPEIMSK 159 (197)
Q Consensus 83 ~~~~~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~---~~~~~~v~~~~~~~~ 159 (197)
..|++++|.+..++.+.+.+... .....+|+|+|++|||||++|++|+... +.+++.++|..+...
T Consensus 373 ~~~~~liG~S~~~~~~~~~~~~~-----------a~~~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~~ 441 (686)
T PRK15429 373 SEFGEIIGRSEAMYSVLKQVEMV-----------AQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAG 441 (686)
T ss_pred ccccceeecCHHHHHHHHHHHHH-----------hCCCCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCChh
Confidence 57789999999999998888754 3456689999999999999999999876 569999999876432
Q ss_pred -----ccCccH-------HHHHHHHHHHhcCCCeEEEEcccCccCcc
Q psy6208 160 -----LAGESE-------SNLRKAFEEADKNSPSIIFIDELDAIAPK 194 (197)
Q Consensus 160 -----~~~~~~-------~~~~~~~~~a~~~~~~vl~lDeid~l~~~ 194 (197)
++|... ......++.+. ..+||||||+.|+..
T Consensus 442 ~~~~~lfg~~~~~~~g~~~~~~g~le~a~---~GtL~Ldei~~L~~~ 485 (686)
T PRK15429 442 LLESDLFGHERGAFTGASAQRIGRFELAD---KSSLFLDEVGDMPLE 485 (686)
T ss_pred HhhhhhcCcccccccccccchhhHHHhcC---CCeEEEechhhCCHH
Confidence 222111 11123344443 458999999999875
No 152
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.02 E-value=1.5e-09 Score=96.19 Aligned_cols=104 Identities=21% Similarity=0.243 Sum_probs=70.9
Q ss_pred hhcCCCCcccccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHhCCeEEE----E--
Q psy6208 78 EASNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFL----I-- 151 (197)
Q Consensus 78 ~~~~~~~~~~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~~~~~~~----v-- 151 (197)
....+.+|++++|++.+++.|.+++... .....+||+||+|+|||++|+++|+.+++.... -
T Consensus 8 ~kyRP~~f~~liGq~~i~~~L~~~l~~~------------rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~C 75 (620)
T PRK14948 8 HKYRPQRFDELVGQEAIATTLKNALISN------------RIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPC 75 (620)
T ss_pred HHhCCCcHhhccChHHHHHHHHHHHHcC------------CCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCC
Confidence 4456789999999999999999988642 234579999999999999999999998652110 0
Q ss_pred -ec---hhhh----------hhccCccHHHHHHHHHHHhc----CCCeEEEEcccCccCc
Q psy6208 152 -NG---PEIM----------SKLAGESESNLRKAFEEADK----NSPSIIFIDELDAIAP 193 (197)
Q Consensus 152 -~~---~~~~----------~~~~~~~~~~~~~~~~~a~~----~~~~vl~lDeid~l~~ 193 (197)
.| ..+. .......-..++++.+.+.. +...|+||||+|.|..
T Consensus 76 g~C~~C~~i~~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~ 135 (620)
T PRK14948 76 GKCELCRAIAAGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLST 135 (620)
T ss_pred cccHHHHHHhcCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCH
Confidence 01 1110 00011233466666665542 3457999999999864
No 153
>PRK06620 hypothetical protein; Validated
Probab=99.01 E-value=1.2e-09 Score=84.85 Aligned_cols=84 Identities=21% Similarity=0.294 Sum_probs=50.7
Q ss_pred cCCCCccccc-Cc--HHHHHHHHHHHHhcccChhhHhhhCCCC-CCceEEECCCCCcHHHHHHHHHHHhCCeEEEEechh
Q psy6208 80 SNAVGYDDIG-GC--RKQLAQIKEMVELPLRHPSLFKAIGVKP-PRGILLYGPPGTGKTLIARAVANETGAFFFLINGPE 155 (197)
Q Consensus 80 ~~~~~~~~i~-g~--~~~~~~l~~~v~~~~~~~~~~~~~~~~~-~~~ill~G~~GtGKT~la~ala~~~~~~~~~v~~~~ 155 (197)
++.++|++++ |. ..+...++++...+ +..+ ...++||||+|+|||||++++++..+..+ +....
T Consensus 10 ~~~~tfd~Fvvg~~N~~a~~~~~~~~~~~----------~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~--~~~~~ 77 (214)
T PRK06620 10 SSKYHPDEFIVSSSNDQAYNIIKNWQCGF----------GVNPYKFTLLIKGPSSSGKTYLTKIWQNLSNAYI--IKDIF 77 (214)
T ss_pred CCCCCchhhEecccHHHHHHHHHHHHHcc----------ccCCCcceEEEECCCCCCHHHHHHHHHhccCCEE--cchhh
Confidence 4578899853 33 23444444443311 1122 25799999999999999999998876533 22111
Q ss_pred hhhhccCccHHHHHHHHHHHhcCCCeEEEEcccCcc
Q psy6208 156 IMSKLAGESESNLRKAFEEADKNSPSIIFIDELDAI 191 (197)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~a~~~~~~vl~lDeid~l 191 (197)
. .. . + .+ ..++|+|||||.+
T Consensus 78 ~-------~~----~-~---~~-~~d~lliDdi~~~ 97 (214)
T PRK06620 78 F-------NE----E-I---LE-KYNAFIIEDIENW 97 (214)
T ss_pred h-------ch----h-H---Hh-cCCEEEEeccccc
Confidence 1 00 1 1 11 3478999999965
No 154
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.01 E-value=1.3e-09 Score=95.52 Aligned_cols=104 Identities=22% Similarity=0.279 Sum_probs=69.0
Q ss_pred hhcCCCCcccccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHhCCe-------EEE
Q psy6208 78 EASNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAF-------FFL 150 (197)
Q Consensus 78 ~~~~~~~~~~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~~~~-------~~~ 150 (197)
....+.+|++++|++.+++.+..++..- ..++.+||+||+|+|||++|+++|+.+++. +-.
T Consensus 8 ~kyRP~~f~diiGqe~iv~~L~~~i~~~------------~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~ 75 (563)
T PRK06647 8 TKRRPRDFNSLEGQDFVVETLKHSIESN------------KIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGE 75 (563)
T ss_pred HHhCCCCHHHccCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCcc
Confidence 3456789999999999999999998642 345569999999999999999999998642 111
Q ss_pred E-echhhhhh-------ccCc---cHHHHHHHHHHHh----cCCCeEEEEcccCccCc
Q psy6208 151 I-NGPEIMSK-------LAGE---SESNLRKAFEEAD----KNSPSIIFIDELDAIAP 193 (197)
Q Consensus 151 v-~~~~~~~~-------~~~~---~~~~~~~~~~~a~----~~~~~vl~lDeid~l~~ 193 (197)
+ +|..+... +-+. .-..++.+.+.+. .+...|+||||+|.|..
T Consensus 76 C~~C~~i~~~~~~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~ 133 (563)
T PRK06647 76 CSSCKSIDNDNSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSN 133 (563)
T ss_pred chHHHHHHcCCCCCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCH
Confidence 0 11111110 0111 1234444443322 24567999999999864
No 155
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.01 E-value=1.4e-09 Score=91.26 Aligned_cols=89 Identities=27% Similarity=0.369 Sum_probs=66.9
Q ss_pred cccCcHHHHHHHHHHHHhcccChhhHhhhC-CCCCCceEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhh-hccC-c
Q psy6208 87 DIGGCRKQLAQIKEMVELPLRHPSLFKAIG-VKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMS-KLAG-E 163 (197)
Q Consensus 87 ~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~-~~~~~~ill~G~~GtGKT~la~ala~~~~~~~~~v~~~~~~~-~~~~-~ 163 (197)
-|+|++++++.+..++............+. -..+++++|+||||+|||++++++|..++.+++.+++..+.. .|.| .
T Consensus 13 ~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~~e~g~vG~d 92 (441)
T TIGR00390 13 YIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRD 92 (441)
T ss_pred hccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecceeecCCcccCC
Confidence 489999999999887764322211111111 124578999999999999999999999999999999987764 6777 4
Q ss_pred cHHHHHHHHHHH
Q psy6208 164 SESNLRKAFEEA 175 (197)
Q Consensus 164 ~~~~~~~~~~~a 175 (197)
.+..++.+|+.+
T Consensus 93 vE~i~r~l~e~A 104 (441)
T TIGR00390 93 VESMVRDLTDAA 104 (441)
T ss_pred HHHHHHHHHHHH
Confidence 667778887776
No 156
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=99.01 E-value=2.3e-10 Score=99.53 Aligned_cols=98 Identities=24% Similarity=0.394 Sum_probs=72.9
Q ss_pred CcccccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHh---CCeEEEEechhhhhh-
Q psy6208 84 GYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANET---GAFFFLINGPEIMSK- 159 (197)
Q Consensus 84 ~~~~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~---~~~~~~v~~~~~~~~- 159 (197)
.+++++|.+..++++.+.+... ...+.+|+|+|++||||+++|++++... +.+++.++|..+...
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~-----------a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~~~ 253 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVV-----------AASDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPESL 253 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHH-----------hCCCCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCChHH
Confidence 6778999999999999988764 3567789999999999999999999886 569999999877432
Q ss_pred ----ccCccHH-------HHHHHHHHHhcCCCeEEEEcccCccCccc
Q psy6208 160 ----LAGESES-------NLRKAFEEADKNSPSIIFIDELDAIAPKR 195 (197)
Q Consensus 160 ----~~~~~~~-------~~~~~~~~a~~~~~~vl~lDeid~l~~~r 195 (197)
++|.... .....|+.+. ..+|||||||.|++.-
T Consensus 254 ~e~~lfG~~~g~~~ga~~~~~g~~~~a~---gGtL~ldeI~~L~~~~ 297 (509)
T PRK05022 254 AESELFGHVKGAFTGAISNRSGKFELAD---GGTLFLDEIGELPLAL 297 (509)
T ss_pred HHHHhcCccccccCCCcccCCcchhhcC---CCEEEecChhhCCHHH
Confidence 2221111 0112344443 3579999999998753
No 157
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=99.01 E-value=5.2e-10 Score=83.91 Aligned_cols=73 Identities=29% Similarity=0.413 Sum_probs=48.8
Q ss_pred CCCceEEECCCCCcHHHHHHHHHHHhCC----eEEEEechhhhhhccCccHHHHHHHHHHH----hcCCCeEEEEcccCc
Q psy6208 119 PPRGILLYGPPGTGKTLIARAVANETGA----FFFLINGPEIMSKLAGESESNLRKAFEEA----DKNSPSIIFIDELDA 190 (197)
Q Consensus 119 ~~~~ill~G~~GtGKT~la~ala~~~~~----~~~~v~~~~~~~~~~~~~~~~~~~~~~~a----~~~~~~vl~lDeid~ 190 (197)
+..+++|.||+|+|||.+|++++..+.. +++.++++++....- ....+..+...+ ......||+|||||.
T Consensus 2 p~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~~~~--~~~~~~~l~~~~~~~v~~~~~gVVllDEidK 79 (171)
T PF07724_consen 2 PKSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSEGDD--VESSVSKLLGSPPGYVGAEEGGVVLLDEIDK 79 (171)
T ss_dssp -SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCSHHH--CSCHCHHHHHHTTCHHHHHHHTEEEEETGGG
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhcccccch--HHhhhhhhhhcccceeeccchhhhhhHHHhh
Confidence 3457999999999999999999999985 999999988865110 000111111110 001123999999999
Q ss_pred cCc
Q psy6208 191 IAP 193 (197)
Q Consensus 191 l~~ 193 (197)
..+
T Consensus 80 a~~ 82 (171)
T PF07724_consen 80 AHP 82 (171)
T ss_dssp CSH
T ss_pred ccc
Confidence 887
No 158
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=99.00 E-value=6.3e-10 Score=99.36 Aligned_cols=100 Identities=22% Similarity=0.382 Sum_probs=72.9
Q ss_pred CCCcccccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHh---CCeEEEEechhhhh
Q psy6208 82 AVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANET---GAFFFLINGPEIMS 158 (197)
Q Consensus 82 ~~~~~~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~---~~~~~~v~~~~~~~ 158 (197)
..+|+++.|.+..++++.+.+... +....+|+|+|++||||+++|+++++.. +.+|+.++|..+..
T Consensus 321 ~~~~~~l~g~s~~~~~~~~~~~~~-----------a~~~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~ 389 (638)
T PRK11388 321 SHTFDHMPQDSPQMRRLIHFGRQA-----------AKSSFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPD 389 (638)
T ss_pred cccccceEECCHHHHHHHHHHHHH-----------hCcCCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCCh
Confidence 567999999999999988887754 3456679999999999999999999876 46999999987632
Q ss_pred -----hccCcc----HHHHHHHHHHHhcCCCeEEEEcccCccCccc
Q psy6208 159 -----KLAGES----ESNLRKAFEEADKNSPSIIFIDELDAIAPKR 195 (197)
Q Consensus 159 -----~~~~~~----~~~~~~~~~~a~~~~~~vl~lDeid~l~~~r 195 (197)
+++|.. .......|+.+ ...+||||||+.|+..-
T Consensus 390 ~~~~~elfg~~~~~~~~~~~g~~~~a---~~GtL~ldei~~l~~~~ 432 (638)
T PRK11388 390 EALAEEFLGSDRTDSENGRLSKFELA---HGGTLFLEKVEYLSPEL 432 (638)
T ss_pred HHHHHHhcCCCCcCccCCCCCceeEC---CCCEEEEcChhhCCHHH
Confidence 223321 00111123333 34589999999998753
No 159
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.00 E-value=1.7e-09 Score=92.62 Aligned_cols=57 Identities=25% Similarity=0.359 Sum_probs=48.0
Q ss_pred hhcCCCCcccccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHhCC
Q psy6208 78 EASNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGA 146 (197)
Q Consensus 78 ~~~~~~~~~~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~~~ 146 (197)
+...+.+|++++|++..++.+.+.+..- ..+..+||+||+|+|||++|+++|+.+.+
T Consensus 9 ~kyRP~~~~diiGq~~~v~~L~~~i~~~------------~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c 65 (451)
T PRK06305 9 RKYRPQTFSEILGQDAVVAVLKNALRFN------------RAAHAYLFSGIRGTGKTTLARIFAKALNC 65 (451)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHHcC------------CCceEEEEEcCCCCCHHHHHHHHHHHhcC
Confidence 3456789999999999999999988642 33567999999999999999999998744
No 160
>PRK06921 hypothetical protein; Provisional
Probab=98.99 E-value=2.1e-09 Score=86.07 Aligned_cols=69 Identities=29% Similarity=0.391 Sum_probs=48.1
Q ss_pred CCCceEEECCCCCcHHHHHHHHHHHh----CCeEEEEechhhhhhccCccHHHHHHHHHHHhcCCCeEEEEcccCc
Q psy6208 119 PPRGILLYGPPGTGKTLIARAVANET----GAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPSIIFIDELDA 190 (197)
Q Consensus 119 ~~~~ill~G~~GtGKT~la~ala~~~----~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~vl~lDeid~ 190 (197)
...+++|+|++|+|||||+.++++++ +..+++++..++...+.... ......++.. ...++|+|||++.
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~l~~~~-~~~~~~~~~~--~~~dlLiIDDl~~ 188 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGDLKDDF-DLLEAKLNRM--KKVEVLFIDDLFK 188 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHHHHHHH-HHHHHHHHHh--cCCCEEEEecccc
Confidence 35689999999999999999999876 56788888877655432111 1112222222 3478999999944
No 161
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=98.99 E-value=1.5e-09 Score=96.78 Aligned_cols=105 Identities=23% Similarity=0.334 Sum_probs=71.2
Q ss_pred HhhcCCCCcccccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHhCCeEEE---Eec
Q psy6208 77 EEASNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFL---ING 153 (197)
Q Consensus 77 ~~~~~~~~~~~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~~~~~~~---v~~ 153 (197)
.....+.+|++++|++.+++.+.+.+..- ..++.+||+||+|+|||++|+++|+.+.+.-.. -.|
T Consensus 9 ~~KyRP~~f~dIiGQe~~v~~L~~aI~~~------------rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC 76 (725)
T PRK07133 9 YRKYRPKTFDDIVGQDHIVQTLKNIIKSN------------KISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPC 76 (725)
T ss_pred HHHhCCCCHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCch
Confidence 34567889999999999999999998742 345568999999999999999999988653110 011
Q ss_pred hhh---hhh------ccC---ccHHHHHHHHHHHhc----CCCeEEEEcccCccCc
Q psy6208 154 PEI---MSK------LAG---ESESNLRKAFEEADK----NSPSIIFIDELDAIAP 193 (197)
Q Consensus 154 ~~~---~~~------~~~---~~~~~~~~~~~~a~~----~~~~vl~lDeid~l~~ 193 (197)
..- ... .-+ .....++.+.+.+.. +...|++|||+|.|..
T Consensus 77 ~~C~~~~~~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~ 132 (725)
T PRK07133 77 QECIENVNNSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSK 132 (725)
T ss_pred hHHHHhhcCCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCH
Confidence 100 000 001 123446666655542 4457999999999864
No 162
>PRK09183 transposase/IS protein; Provisional
Probab=98.99 E-value=7.9e-10 Score=88.27 Aligned_cols=77 Identities=22% Similarity=0.433 Sum_probs=53.9
Q ss_pred CCCCceEEECCCCCcHHHHHHHHHHHh---CCeEEEEechhhhhhccCc-cHHHHHHHHHHHhcCCCeEEEEcccCccCc
Q psy6208 118 KPPRGILLYGPPGTGKTLIARAVANET---GAFFFLINGPEIMSKLAGE-SESNLRKAFEEADKNSPSIIFIDELDAIAP 193 (197)
Q Consensus 118 ~~~~~ill~G~~GtGKT~la~ala~~~---~~~~~~v~~~~~~~~~~~~-~~~~~~~~~~~a~~~~~~vl~lDeid~l~~ 193 (197)
....+++|+||||+|||||+.+++... |..+.++++.++...+... ....+...+.... ..+++++|||++.+..
T Consensus 100 ~~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~~-~~~dlLiiDdlg~~~~ 178 (259)
T PRK09183 100 ERNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRGV-MAPRLLIIDEIGYLPF 178 (259)
T ss_pred hcCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHHHHHHHCCcHHHHHHHHh-cCCCEEEEcccccCCC
Confidence 446689999999999999999997664 7788888888776544211 1112333444432 3578999999998765
Q ss_pred cc
Q psy6208 194 KR 195 (197)
Q Consensus 194 ~r 195 (197)
.+
T Consensus 179 ~~ 180 (259)
T PRK09183 179 SQ 180 (259)
T ss_pred Ch
Confidence 43
No 163
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.99 E-value=4.1e-09 Score=91.01 Aligned_cols=57 Identities=26% Similarity=0.377 Sum_probs=47.8
Q ss_pred hhcCCCCcccccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHhCC
Q psy6208 78 EASNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGA 146 (197)
Q Consensus 78 ~~~~~~~~~~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~~~ 146 (197)
....+.+|++++|++..++.+.+.+..- ..++.+||+||+|+|||++|+.+|..+++
T Consensus 8 ~kyRP~~f~diiGq~~i~~~L~~~i~~~------------~i~hayLf~Gp~G~GKTtlAr~lAk~L~c 64 (486)
T PRK14953 8 RKYRPKFFKEVIGQEIVVRILKNAVKLQ------------RVSHAYIFAGPRGTGKTTIARILAKVLNC 64 (486)
T ss_pred HhhCCCcHHHccChHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 4456789999999999999999988642 33456889999999999999999998864
No 164
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.98 E-value=1.9e-09 Score=95.02 Aligned_cols=105 Identities=19% Similarity=0.206 Sum_probs=71.8
Q ss_pred HhhcCCCCcccccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHhCCeEEEE-----
Q psy6208 77 EEASNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLI----- 151 (197)
Q Consensus 77 ~~~~~~~~~~~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~~~~~~~v----- 151 (197)
.....+.+|++++|++..++.|.+++..- ..+..+||+||+|+|||++|+++|+.+++.....
T Consensus 15 a~KyRP~~f~dliGq~~~v~~L~~~~~~g------------ri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~ 82 (598)
T PRK09111 15 ARKYRPQTFDDLIGQEAMVRTLTNAFETG------------RIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPT 82 (598)
T ss_pred HhhhCCCCHHHhcCcHHHHHHHHHHHHcC------------CCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCc
Confidence 34466789999999999999999988642 4466799999999999999999999986532111
Q ss_pred --------echhhhhhc-------c---CccHHHHHHHHHHHhc----CCCeEEEEcccCccCc
Q psy6208 152 --------NGPEIMSKL-------A---GESESNLRKAFEEADK----NSPSIIFIDELDAIAP 193 (197)
Q Consensus 152 --------~~~~~~~~~-------~---~~~~~~~~~~~~~a~~----~~~~vl~lDeid~l~~ 193 (197)
+|..+.... . ...-..++.+.+.+.. ....|+||||+|.|..
T Consensus 83 ~~~cg~c~~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~ 146 (598)
T PRK09111 83 IDLCGVGEHCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLST 146 (598)
T ss_pred cccCcccHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCH
Confidence 111111100 0 0123455666555432 3457999999999874
No 165
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.98 E-value=3.5e-09 Score=93.63 Aligned_cols=57 Identities=19% Similarity=0.350 Sum_probs=48.0
Q ss_pred hhcCCCCcccccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHhCC
Q psy6208 78 EASNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGA 146 (197)
Q Consensus 78 ~~~~~~~~~~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~~~ 146 (197)
+...+.+|++++|++..++.|..++... ..+..+||+||+|+|||++++++++.+++
T Consensus 8 ~kyRP~~~~eiiGq~~~~~~L~~~i~~~------------~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c 64 (585)
T PRK14950 8 RKWRSQTFAELVGQEHVVQTLRNAIAEG------------RVAHAYLFTGPRGVGKTSTARILAKAVNC 64 (585)
T ss_pred HHhCCCCHHHhcCCHHHHHHHHHHHHhC------------CCceEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 4567889999999999999998887642 23456899999999999999999998854
No 166
>KOG0745|consensus
Probab=98.98 E-value=1.1e-09 Score=91.10 Aligned_cols=75 Identities=36% Similarity=0.610 Sum_probs=59.5
Q ss_pred CCceEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhh-hccCcc-HHHHHHHHHHHh----cCCCeEEEEcccCccCc
Q psy6208 120 PRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMS-KLAGES-ESNLRKAFEEAD----KNSPSIIFIDELDAIAP 193 (197)
Q Consensus 120 ~~~ill~G~~GtGKT~la~ala~~~~~~~~~v~~~~~~~-~~~~~~-~~~~~~~~~~a~----~~~~~vl~lDeid~l~~ 193 (197)
..+|||.||+|+|||.||+.+|..++.||...+|..+.. .|+|+. +.-+..++..|. +.+..|+||||+|.+..
T Consensus 226 KSNvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEvDKi~~ 305 (564)
T KOG0745|consen 226 KSNVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEVDKITK 305 (564)
T ss_pred cccEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehhhhhcc
Confidence 357999999999999999999999999999999998864 466653 445566665542 23456999999999974
Q ss_pred c
Q psy6208 194 K 194 (197)
Q Consensus 194 ~ 194 (197)
+
T Consensus 306 ~ 306 (564)
T KOG0745|consen 306 K 306 (564)
T ss_pred c
Confidence 3
No 167
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=98.98 E-value=1.1e-09 Score=91.80 Aligned_cols=90 Identities=28% Similarity=0.339 Sum_probs=67.2
Q ss_pred cccCcHHHHHHHHHHHHhcccChhhHhhhC-CCCCCceEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhh-hccC-c
Q psy6208 87 DIGGCRKQLAQIKEMVELPLRHPSLFKAIG-VKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMS-KLAG-E 163 (197)
Q Consensus 87 ~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~-~~~~~~ill~G~~GtGKT~la~ala~~~~~~~~~v~~~~~~~-~~~~-~ 163 (197)
.|+|++.+++.+..++............+. -..+.++||+||||+|||++|+++|..++.+++.+++.++.. .|.| .
T Consensus 16 ~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~e~GyvG~d 95 (443)
T PRK05201 16 YIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRD 95 (443)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChheeecchhhccCCcccCC
Confidence 489999999999888764322111111110 012578999999999999999999999999999999988875 5777 4
Q ss_pred cHHHHHHHHHHHh
Q psy6208 164 SESNLRKAFEEAD 176 (197)
Q Consensus 164 ~~~~~~~~~~~a~ 176 (197)
.+..++.+|+.|.
T Consensus 96 ~e~~ir~L~~~A~ 108 (443)
T PRK05201 96 VESIIRDLVEIAV 108 (443)
T ss_pred HHHHHHHHHHHHH
Confidence 5677778877773
No 168
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=98.97 E-value=3.1e-10 Score=86.79 Aligned_cols=45 Identities=33% Similarity=0.533 Sum_probs=36.5
Q ss_pred cccccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHh
Q psy6208 85 YDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANET 144 (197)
Q Consensus 85 ~~~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~ 144 (197)
|++|.|++.+++.+.-+... ..++||.||||||||++|+++...+
T Consensus 2 f~dI~GQe~aKrAL~iAAaG---------------~h~lLl~GppGtGKTmlA~~l~~lL 46 (206)
T PF01078_consen 2 FSDIVGQEEAKRALEIAAAG---------------GHHLLLIGPPGTGKTMLARRLPSLL 46 (206)
T ss_dssp TCCSSSTHHHHHHHHHHHHC---------------C--EEEES-CCCTHHHHHHHHHHCS
T ss_pred hhhhcCcHHHHHHHHHHHcC---------------CCCeEEECCCCCCHHHHHHHHHHhC
Confidence 78999999999998776642 4689999999999999999998765
No 169
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.97 E-value=3.5e-09 Score=93.98 Aligned_cols=64 Identities=31% Similarity=0.542 Sum_probs=51.3
Q ss_pred cCCCCcccccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHh----------CCeEE
Q psy6208 80 SNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANET----------GAFFF 149 (197)
Q Consensus 80 ~~~~~~~~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~----------~~~~~ 149 (197)
..+.+|++++|++..++.+.+.+.. ..+.+++|+||||||||++|+++++.. +.+++
T Consensus 148 ~rp~~~~~iiGqs~~~~~l~~~ia~-------------~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv 214 (615)
T TIGR02903 148 LRPRAFSEIVGQERAIKALLAKVAS-------------PFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFV 214 (615)
T ss_pred cCcCcHHhceeCcHHHHHHHHHHhc-------------CCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeE
Confidence 4467899999999999988766542 335579999999999999999998765 34688
Q ss_pred EEechhh
Q psy6208 150 LINGPEI 156 (197)
Q Consensus 150 ~v~~~~~ 156 (197)
.++|..+
T Consensus 215 ~i~~~~l 221 (615)
T TIGR02903 215 EVDGTTL 221 (615)
T ss_pred EEechhc
Confidence 8988764
No 170
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=98.96 E-value=2.9e-10 Score=82.29 Aligned_cols=82 Identities=26% Similarity=0.511 Sum_probs=58.0
Q ss_pred cCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHhCC---eEEEEechhhhhhccCccH
Q psy6208 89 GGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGA---FFFLINGPEIMSKLAGESE 165 (197)
Q Consensus 89 ~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~~~---~~~~v~~~~~~~~~~~~~~ 165 (197)
+|.+..++++++.+... .....+|+|+|++||||+++|++++...+. +++.++|..+.
T Consensus 1 vG~S~~~~~l~~~l~~~-----------a~~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~-------- 61 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERL-----------AKSSSPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLP-------- 61 (138)
T ss_dssp --SCHHHHHHHHHHHHH-----------HCSSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTC--------
T ss_pred CCCCHHHHHHHHHHHHH-----------hCCCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCc--------
Confidence 36677788888877654 245678999999999999999999988743 56666776542
Q ss_pred HHHHHHHHHHhcCCCeEEEEcccCccCccc
Q psy6208 166 SNLRKAFEEADKNSPSIIFIDELDAIAPKR 195 (197)
Q Consensus 166 ~~~~~~~~~a~~~~~~vl~lDeid~l~~~r 195 (197)
.+.++.+ ...+|+|+|+|.|++..
T Consensus 62 ---~~~l~~a---~~gtL~l~~i~~L~~~~ 85 (138)
T PF14532_consen 62 ---AELLEQA---KGGTLYLKNIDRLSPEA 85 (138)
T ss_dssp ---HHHHHHC---TTSEEEEECGCCS-HHH
T ss_pred ---HHHHHHc---CCCEEEECChHHCCHHH
Confidence 3344554 45589999999998754
No 171
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=98.94 E-value=7.6e-09 Score=92.47 Aligned_cols=101 Identities=24% Similarity=0.413 Sum_probs=84.7
Q ss_pred CCCcccccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHh----------CCeEEEE
Q psy6208 82 AVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANET----------GAFFFLI 151 (197)
Q Consensus 82 ~~~~~~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~----------~~~~~~v 151 (197)
.-.+|-++|.++.++++.+.+.. +..++-+|.|+||+|||.++..+|.+. +..++.+
T Consensus 166 ~gklDPvIGRd~EI~r~iqIL~R-------------R~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sL 232 (786)
T COG0542 166 EGKLDPVIGRDEEIRRTIQILSR-------------RTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSL 232 (786)
T ss_pred cCCCCCCcChHHHHHHHHHHHhc-------------cCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEe
Confidence 44567899999999999998875 345677889999999999999999875 5677888
Q ss_pred echhhh--hhccCccHHHHHHHHHHHhcCCCeEEEEcccCccCccc
Q psy6208 152 NGPEIM--SKLAGESESNLRKAFEEADKNSPSIIFIDELDAIAPKR 195 (197)
Q Consensus 152 ~~~~~~--~~~~~~~~~~~~~~~~~a~~~~~~vl~lDeid~l~~~r 195 (197)
+...+. .+|.|+.+..++.+.+......+.||||||+|.+.+..
T Consensus 233 D~g~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG 278 (786)
T COG0542 233 DLGSLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAG 278 (786)
T ss_pred cHHHHhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCC
Confidence 877765 46789999999999999988778999999999997753
No 172
>PRK10865 protein disaggregation chaperone; Provisional
Probab=98.93 E-value=3.4e-09 Score=97.19 Aligned_cols=106 Identities=23% Similarity=0.337 Sum_probs=67.9
Q ss_pred cccccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHh---CCeEEEEechhhhhh--
Q psy6208 85 YDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANET---GAFFFLINGPEIMSK-- 159 (197)
Q Consensus 85 ~~~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~---~~~~~~v~~~~~~~~-- 159 (197)
...++|++.++..+.+.+........ . .-.+...++|+||+|||||++|+++|..+ +.+++.++++++...
T Consensus 567 ~~~viGQ~~ai~~l~~~i~~~~~gl~---~-~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id~se~~~~~~ 642 (857)
T PRK10865 567 HHRVIGQNEAVEAVSNAIRRSRAGLS---D-PNRPIGSFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEFMEKHS 642 (857)
T ss_pred CCeEeCCHHHHHHHHHHHHHHHhccc---C-CCCCCceEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEEhHHhhhhhh
Confidence 34689999999999998875311000 0 00122468999999999999999999887 457899998876432
Q ss_pred ---ccCccH----HHHHHHHH-HHhcCCCeEEEEcccCccCcc
Q psy6208 160 ---LAGESE----SNLRKAFE-EADKNSPSIIFIDELDAIAPK 194 (197)
Q Consensus 160 ---~~~~~~----~~~~~~~~-~a~~~~~~vl~lDeid~l~~~ 194 (197)
++|... ..-...+. ..+....++|+|||++.+.+.
T Consensus 643 ~~~LiG~~pgy~g~~~~g~l~~~v~~~p~~vLllDEieka~~~ 685 (857)
T PRK10865 643 VSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKAHPD 685 (857)
T ss_pred HHHHhCCCCcccccchhHHHHHHHHhCCCCeEEEeehhhCCHH
Confidence 121110 00011222 233344589999999987654
No 173
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=98.92 E-value=9.1e-10 Score=89.86 Aligned_cols=75 Identities=23% Similarity=0.201 Sum_probs=54.7
Q ss_pred CCCceEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhhh--ccCccHHH----------HHHHHHHHhcCCCeEEEEc
Q psy6208 119 PPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSK--LAGESESN----------LRKAFEEADKNSPSIIFID 186 (197)
Q Consensus 119 ~~~~ill~G~~GtGKT~la~ala~~~~~~~~~v~~~~~~~~--~~~~~~~~----------~~~~~~~a~~~~~~vl~lD 186 (197)
..++|+|.|+||||||++++++|..++.+++.+++...... +.|...-. ..+.+..|.+ .+.++++|
T Consensus 63 ~~~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~~-~g~illlD 141 (327)
T TIGR01650 63 YDRRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWALQ-HNVALCFD 141 (327)
T ss_pred cCCcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHHh-CCeEEEec
Confidence 35689999999999999999999999999999998766543 34432100 1122333433 36789999
Q ss_pred ccCccCcc
Q psy6208 187 ELDAIAPK 194 (197)
Q Consensus 187 eid~l~~~ 194 (197)
|++...++
T Consensus 142 Ein~a~p~ 149 (327)
T TIGR01650 142 EYDAGRPD 149 (327)
T ss_pred hhhccCHH
Confidence 99988764
No 174
>KOG1969|consensus
Probab=98.92 E-value=3.2e-09 Score=93.19 Aligned_cols=111 Identities=21% Similarity=0.299 Sum_probs=71.8
Q ss_pred cCCCCcccccCcHHHHHHHHHHHHhc--ccChhhHhhh-------------------CCCCCCceEEECCCCCcHHHHHH
Q psy6208 80 SNAVGYDDIGGCRKQLAQIKEMVELP--LRHPSLFKAI-------------------GVKPPRGILLYGPPGTGKTLIAR 138 (197)
Q Consensus 80 ~~~~~~~~i~g~~~~~~~l~~~v~~~--~~~~~~~~~~-------------------~~~~~~~ill~G~~GtGKT~la~ 138 (197)
+.+-.|.|+.|.+.+=+.+..|+... ..+...+.++ +-++.+-+||+||||.|||+||+
T Consensus 265 y~Pk~FtdLLsDe~tNR~~L~WLK~WD~~VFg~~vsrl~~s~~~~~ke~~~~~~~~s~RP~kKilLL~GppGlGKTTLAH 344 (877)
T KOG1969|consen 265 YRPKKFTDLLSDEKTNRRMLGWLKQWDPCVFGQKVSRLLASKGPTEKEVLDMELDPSKRPPKKILLLCGPPGLGKTTLAH 344 (877)
T ss_pred cChhHHHHHhcchhHHHHHHHHHHhhcHHhhcchHhhhccccccchhhhhhcccCccCCCccceEEeecCCCCChhHHHH
Confidence 44556788999998888888887632 1111001111 11223448999999999999999
Q ss_pred HHHHHhCCeEEEEechhhhhhccCccHHHHHHHHHHH----hcCCCeEEEEcccCccC
Q psy6208 139 AVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEA----DKNSPSIIFIDELDAIA 192 (197)
Q Consensus 139 ala~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~a----~~~~~~vl~lDeid~l~ 192 (197)
.+|++.|++++.+|+++-.+.- .....+..+...- ...+|.+|++||||--.
T Consensus 345 ViAkqaGYsVvEINASDeRt~~--~v~~kI~~avq~~s~l~adsrP~CLViDEIDGa~ 400 (877)
T KOG1969|consen 345 VIAKQAGYSVVEINASDERTAP--MVKEKIENAVQNHSVLDADSRPVCLVIDEIDGAP 400 (877)
T ss_pred HHHHhcCceEEEecccccccHH--HHHHHHHHHHhhccccccCCCcceEEEecccCCc
Confidence 9999999999999998653221 1122232222211 12569999999999644
No 175
>CHL00095 clpC Clp protease ATP binding subunit
Probab=98.91 E-value=4.2e-09 Score=96.44 Aligned_cols=103 Identities=22% Similarity=0.330 Sum_probs=68.8
Q ss_pred ccccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHh---CCeEEEEechhhhhh---
Q psy6208 86 DDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANET---GAFFFLINGPEIMSK--- 159 (197)
Q Consensus 86 ~~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~---~~~~~~v~~~~~~~~--- 159 (197)
+.++|++.+++.+.+.+........ . .-.+...++|+||+|+|||++|+++|+.+ ..+++.++++++...
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~---~-~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~~~~~ 584 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLK---N-PNRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYMEKHTV 584 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhccc---C-CCCCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhccccccH
Confidence 4589999999999988864311100 0 01223458999999999999999999987 357888887766321
Q ss_pred --c-------cCccHHHHHHHHHHHhcCCCeEEEEcccCccCcc
Q psy6208 160 --L-------AGESESNLRKAFEEADKNSPSIIFIDELDAIAPK 194 (197)
Q Consensus 160 --~-------~~~~~~~~~~~~~~a~~~~~~vl~lDeid~l~~~ 194 (197)
+ +|..+ ...+.+..+....+||+|||+|.+.+.
T Consensus 585 ~~l~g~~~gyvg~~~--~~~l~~~~~~~p~~VvllDeieka~~~ 626 (821)
T CHL00095 585 SKLIGSPPGYVGYNE--GGQLTEAVRKKPYTVVLFDEIEKAHPD 626 (821)
T ss_pred HHhcCCCCcccCcCc--cchHHHHHHhCCCeEEEECChhhCCHH
Confidence 1 12111 112344445555689999999988764
No 176
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=98.89 E-value=5.3e-09 Score=90.78 Aligned_cols=56 Identities=20% Similarity=0.201 Sum_probs=47.2
Q ss_pred hhcCCCCcccccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHhC
Q psy6208 78 EASNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANETG 145 (197)
Q Consensus 78 ~~~~~~~~~~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~~ 145 (197)
....+.+|++++|++..++.+...+..- ..++.+||+||+|+|||++|+++++.+.
T Consensus 6 ~KyRP~~fdeiiGqe~v~~~L~~~I~~g------------rl~hayLf~Gp~G~GKTt~Ar~LAk~L~ 61 (535)
T PRK08451 6 LKYRPKHFDELIGQESVSKTLSLALDNN------------RLAHAYLFSGLRGSGKTSSARIFARALV 61 (535)
T ss_pred HHHCCCCHHHccCcHHHHHHHHHHHHcC------------CCCeeEEEECCCCCcHHHHHHHHHHHhc
Confidence 3466789999999999999999988642 3455679999999999999999999873
No 177
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=98.87 E-value=1.2e-08 Score=93.84 Aligned_cols=103 Identities=23% Similarity=0.353 Sum_probs=69.5
Q ss_pred ccccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHh---CCeEEEEechhhhhhc--
Q psy6208 86 DDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANET---GAFFFLINGPEIMSKL-- 160 (197)
Q Consensus 86 ~~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~---~~~~~~v~~~~~~~~~-- 160 (197)
..+.|++.+++.+.+.+......-. . .-.+...++|+||+|||||++|+++|..+ +.+++.++++++....
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~---~-~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s~~~~~~~~ 640 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLS---D-PNRPIGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEYMEKHSV 640 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCC---C-CCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEechhhcccchH
Confidence 4589999999999998875311000 0 01234568999999999999999999987 4689999988764321
Q ss_pred ---c-------CccHHHHHHHHHHHhcCCCeEEEEcccCccCcc
Q psy6208 161 ---A-------GESESNLRKAFEEADKNSPSIIFIDELDAIAPK 194 (197)
Q Consensus 161 ---~-------~~~~~~~~~~~~~a~~~~~~vl~lDeid~l~~~ 194 (197)
. |..+. ..+.+..+....+||+||||+.+.+.
T Consensus 641 ~~l~g~~~g~~g~~~~--g~l~~~v~~~p~~vlllDeieka~~~ 682 (852)
T TIGR03346 641 ARLIGAPPGYVGYEEG--GQLTEAVRRKPYSVVLFDEVEKAHPD 682 (852)
T ss_pred HHhcCCCCCccCcccc--cHHHHHHHcCCCcEEEEeccccCCHH
Confidence 1 11111 12233334455679999999988764
No 178
>PRK13531 regulatory ATPase RavA; Provisional
Probab=98.87 E-value=5.7e-09 Score=89.12 Aligned_cols=94 Identities=19% Similarity=0.266 Sum_probs=57.6
Q ss_pred cccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHhCC--eEEEEech-hhhhhccCc
Q psy6208 87 DIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGA--FFFLINGP-EIMSKLAGE 163 (197)
Q Consensus 87 ~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~~~--~~~~v~~~-~~~~~~~~~ 163 (197)
.+.|.++.++.+...+ ....++||.||||||||++|++++...+. +|.++.+. ....+.+|.
T Consensus 21 ~i~gre~vI~lll~aa---------------lag~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~fttp~DLfG~ 85 (498)
T PRK13531 21 GLYERSHAIRLCLLAA---------------LSGESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGP 85 (498)
T ss_pred hccCcHHHHHHHHHHH---------------ccCCCEEEECCCChhHHHHHHHHHHHhcccCcceeeeeeecCcHHhcCc
Confidence 4677777776666554 34678999999999999999999998743 44444432 122233332
Q ss_pred c-HHHH--HHHHHHHhcC---CCeEEEEcccCccCccc
Q psy6208 164 S-ESNL--RKAFEEADKN---SPSIIFIDELDAIAPKR 195 (197)
Q Consensus 164 ~-~~~~--~~~~~~a~~~---~~~vl~lDeid~l~~~r 195 (197)
. -... .+.|.....+ ...+||+|||..+.++-
T Consensus 86 l~i~~~~~~g~f~r~~~G~L~~A~lLfLDEI~rasp~~ 123 (498)
T PRK13531 86 LSIQALKDEGRYQRLTSGYLPEAEIVFLDEIWKAGPAI 123 (498)
T ss_pred HHHhhhhhcCchhhhcCCccccccEEeecccccCCHHH
Confidence 1 0000 1223222222 24599999999887753
No 179
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.85 E-value=4.1e-09 Score=76.13 Aligned_cols=71 Identities=32% Similarity=0.497 Sum_probs=44.4
Q ss_pred ceEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhhh--ccCccHHH------HHHHHHHHhcCCCeEEEEcccCccCc
Q psy6208 122 GILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSK--LAGESESN------LRKAFEEADKNSPSIIFIDELDAIAP 193 (197)
Q Consensus 122 ~ill~G~~GtGKT~la~ala~~~~~~~~~v~~~~~~~~--~~~~~~~~------~~~~~~~a~~~~~~vl~lDeid~l~~ 193 (197)
+|+|+||||+|||++++.+|+.++.+++.+++...... +.+...-. ....+..+.. .+.+++|||++...+
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~~-~~~il~lDEin~a~~ 79 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAMR-KGGILVLDEINRAPP 79 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTHH-EEEEEEESSCGG--H
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeeccccccccccccccccc-ceeEEEECCcccCCH
Confidence 48999999999999999999999999999987654321 11110000 0000000111 468999999997654
No 180
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.83 E-value=3.3e-08 Score=87.70 Aligned_cols=104 Identities=20% Similarity=0.292 Sum_probs=69.4
Q ss_pred hhcCCCCcccccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHhCCeEEEE------
Q psy6208 78 EASNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLI------ 151 (197)
Q Consensus 78 ~~~~~~~~~~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~~~~~~~v------ 151 (197)
....+.+|++|+|++.+++.+..++..- ..+..+||+||+|+|||++|+.+|+.+.+.....
T Consensus 9 ~kyRP~~f~~viGq~~~~~~L~~~i~~~------------~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg 76 (614)
T PRK14971 9 RKYRPSTFESVVGQEALTTTLKNAIATN------------KLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACN 76 (614)
T ss_pred HHHCCCCHHHhcCcHHHHHHHHHHHHcC------------CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCC
Confidence 4466789999999999999999998642 3455699999999999999999999875421000
Q ss_pred ---echhhhhh-------ccC---ccHHHHHHHHHHHhc----CCCeEEEEcccCccCc
Q psy6208 152 ---NGPEIMSK-------LAG---ESESNLRKAFEEADK----NSPSIIFIDELDAIAP 193 (197)
Q Consensus 152 ---~~~~~~~~-------~~~---~~~~~~~~~~~~a~~----~~~~vl~lDeid~l~~ 193 (197)
+|..+... +-+ .....++.+.+.+.. +...|++|||+|.|..
T Consensus 77 ~C~sC~~~~~~~~~n~~~ld~~~~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~ 135 (614)
T PRK14971 77 ECESCVAFNEQRSYNIHELDAASNNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQ 135 (614)
T ss_pred cchHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHhhCcccCCcEEEEEECcccCCH
Confidence 11111100 001 113445555554432 3356999999999865
No 181
>PF13173 AAA_14: AAA domain
Probab=98.82 E-value=1.1e-08 Score=73.03 Aligned_cols=70 Identities=29% Similarity=0.398 Sum_probs=48.2
Q ss_pred CceEEECCCCCcHHHHHHHHHHHhC--CeEEEEechhhhhhccCccHHHHHHHHHHHhcCCCeEEEEcccCccC
Q psy6208 121 RGILLYGPPGTGKTLIARAVANETG--AFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPSIIFIDELDAIA 192 (197)
Q Consensus 121 ~~ill~G~~GtGKT~la~ala~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~vl~lDeid~l~ 192 (197)
..++|+||.|+|||++++.+++... ..++++++.+.......... +...+.........+|||||++.+.
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~iDEiq~~~ 74 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLADPD--LLEYFLELIKPGKKYIFIDEIQYLP 74 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhhhh--hHHHHHHhhccCCcEEEEehhhhhc
Confidence 4689999999999999999998875 78888887765432111100 2233333222256799999999875
No 182
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=98.82 E-value=3.7e-08 Score=76.46 Aligned_cols=92 Identities=24% Similarity=0.380 Sum_probs=69.1
Q ss_pred CCCCcccccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHh---CCeEEEEechhhh
Q psy6208 81 NAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANET---GAFFFLINGPEIM 157 (197)
Q Consensus 81 ~~~~~~~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~---~~~~~~v~~~~~~ 157 (197)
+.+.+.+|.|.+.+++.+.+....+... .+..++||||..|||||+|++|+.++. +...+.|+..++.
T Consensus 55 ~~i~L~~l~Gvd~qk~~L~~NT~~F~~G---------~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k~dl~ 125 (287)
T COG2607 55 DPIDLADLVGVDRQKEALVRNTEQFAEG---------LPANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDKEDLA 125 (287)
T ss_pred CCcCHHHHhCchHHHHHHHHHHHHHHcC---------CcccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcHHHHh
Confidence 4578899999999999998876654332 456789999999999999999999887 6678899887763
Q ss_pred hhccCccHHHHHHHHHHHhc-CCCeEEEEcccCc
Q psy6208 158 SKLAGESESNLRKAFEEADK-NSPSIIFIDELDA 190 (197)
Q Consensus 158 ~~~~~~~~~~~~~~~~~a~~-~~~~vl~lDeid~ 190 (197)
.+..+++..+. ...-|||+||+-.
T Consensus 126 ---------~Lp~l~~~Lr~~~~kFIlFcDDLSF 150 (287)
T COG2607 126 ---------TLPDLVELLRARPEKFILFCDDLSF 150 (287)
T ss_pred ---------hHHHHHHHHhcCCceEEEEecCCCC
Confidence 23334444332 2356899998643
No 183
>KOG0741|consensus
Probab=98.80 E-value=1.1e-08 Score=87.10 Aligned_cols=73 Identities=34% Similarity=0.514 Sum_probs=58.4
Q ss_pred CCceEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhh-hhccCccHHHHHHHHHHHhcCCCeEEEEcccCccC
Q psy6208 120 PRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIM-SKLAGESESNLRKAFEEADKNSPSIIFIDELDAIA 192 (197)
Q Consensus 120 ~~~ill~G~~GtGKT~la~ala~~~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~a~~~~~~vl~lDeid~l~ 192 (197)
-..+||+||||+|||.||..+|..++.||+.+-.++-+ +-...+.-..+...|+.|++..-+||++||++.|.
T Consensus 538 lvSvLl~Gp~~sGKTaLAA~iA~~S~FPFvKiiSpe~miG~sEsaKc~~i~k~F~DAYkS~lsiivvDdiErLi 611 (744)
T KOG0741|consen 538 LVSVLLEGPPGSGKTALAAKIALSSDFPFVKIISPEDMIGLSESAKCAHIKKIFEDAYKSPLSIIVVDDIERLL 611 (744)
T ss_pred ceEEEEecCCCCChHHHHHHHHhhcCCCeEEEeChHHccCccHHHHHHHHHHHHHHhhcCcceEEEEcchhhhh
Confidence 34589999999999999999999999999987655433 22222233467899999999988999999999874
No 184
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=98.78 E-value=4.8e-09 Score=86.75 Aligned_cols=52 Identities=23% Similarity=0.290 Sum_probs=44.3
Q ss_pred cCCCCcccccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHh
Q psy6208 80 SNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANET 144 (197)
Q Consensus 80 ~~~~~~~~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~ 144 (197)
.+.+.|++|+|+++.+..|...+..+ ...+++|.|++|||||+++++++..+
T Consensus 11 ~~~~pf~~ivGq~~~k~al~~~~~~p-------------~~~~vli~G~~GtGKs~~ar~~~~~l 62 (350)
T CHL00081 11 RPVFPFTAIVGQEEMKLALILNVIDP-------------KIGGVMIMGDRGTGKSTTIRALVDLL 62 (350)
T ss_pred CCCCCHHHHhChHHHHHHHHHhccCC-------------CCCeEEEEcCCCCCHHHHHHHHHHHH
Confidence 44789999999999999988776653 34589999999999999999998776
No 185
>PRK09087 hypothetical protein; Validated
Probab=98.78 E-value=1e-08 Score=80.34 Aligned_cols=57 Identities=32% Similarity=0.441 Sum_probs=38.0
Q ss_pred CCceEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhhhccCccHHHHHHHHHHHhcCCCeEEEEcccCccC
Q psy6208 120 PRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPSIIFIDELDAIA 192 (197)
Q Consensus 120 ~~~ill~G~~GtGKT~la~ala~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~vl~lDeid~l~ 192 (197)
.+.++|+||+|+|||||++++++..+.. +++...+.... +..... .+|+|||++.+.
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~~~~--~i~~~~~~~~~-----------~~~~~~---~~l~iDDi~~~~ 100 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKSDAL--LIHPNEIGSDA-----------ANAAAE---GPVLIEDIDAGG 100 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhcCCE--EecHHHcchHH-----------HHhhhc---CeEEEECCCCCC
Confidence 4459999999999999999999876544 45443332211 111111 478889998774
No 186
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.76 E-value=2.4e-08 Score=71.06 Aligned_cols=72 Identities=24% Similarity=0.441 Sum_probs=46.0
Q ss_pred CCceEEECCCCCcHHHHHHHHHHHh--------CCeEEEEechhhhh----------hc----cC-ccHHH-HHHHHHHH
Q psy6208 120 PRGILLYGPPGTGKTLIARAVANET--------GAFFFLINGPEIMS----------KL----AG-ESESN-LRKAFEEA 175 (197)
Q Consensus 120 ~~~ill~G~~GtGKT~la~ala~~~--------~~~~~~v~~~~~~~----------~~----~~-~~~~~-~~~~~~~a 175 (197)
...++|+||+|+|||++++.++... +.++++++++...+ .+ .. ..... ...+.+..
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l 83 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDAL 83 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHH
Confidence 4578999999999999999999887 67888888765431 00 11 12222 23333344
Q ss_pred hcCCCeEEEEcccCcc
Q psy6208 176 DKNSPSIIFIDELDAI 191 (197)
Q Consensus 176 ~~~~~~vl~lDeid~l 191 (197)
......+|+|||+|.|
T Consensus 84 ~~~~~~~lviDe~~~l 99 (131)
T PF13401_consen 84 DRRRVVLLVIDEADHL 99 (131)
T ss_dssp HHCTEEEEEEETTHHH
T ss_pred HhcCCeEEEEeChHhc
Confidence 4444469999999987
No 187
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=98.76 E-value=2e-08 Score=87.29 Aligned_cols=91 Identities=69% Similarity=1.155 Sum_probs=82.5
Q ss_pred cccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhhhccCccHHHHHHHHHHHhcCCCeEEE
Q psy6208 105 PLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPSIIF 184 (197)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~vl~ 184 (197)
++..++.++.++..++.+++++||||+|||.+++++++. +.....+++++....+.+..+..+...|+.+....|++++
T Consensus 3 ~~~~~~~~~~~~~~~~~~v~~~g~~~~~~t~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ii~ 81 (494)
T COG0464 3 PLKEPELFKKLGIEPPKGVLLHGPPGTGKTLLARALANE-GAEFLSINGPEILSKYVGESELRLRELFEEAEKLAPSIIF 81 (494)
T ss_pred CccCHHHHHHhCCCCCCCceeeCCCCCchhHHHHHHHhc-cCcccccCcchhhhhhhhHHHHHHHHHHHHHHHhCCCeEe
Confidence 355677788888999999999999999999999999999 6656888899999999999999999999999999999999
Q ss_pred EcccCccCcccC
Q psy6208 185 IDELDAIAPKRE 196 (197)
Q Consensus 185 lDeid~l~~~r~ 196 (197)
+||++.+.+++.
T Consensus 82 ~d~~~~~~~~~~ 93 (494)
T COG0464 82 IDEIDALAPKRS 93 (494)
T ss_pred echhhhcccCcc
Confidence 999999999875
No 188
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=98.76 E-value=4.5e-09 Score=86.58 Aligned_cols=51 Identities=24% Similarity=0.288 Sum_probs=42.1
Q ss_pred CCCCcccccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHh
Q psy6208 81 NAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANET 144 (197)
Q Consensus 81 ~~~~~~~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~ 144 (197)
.++.|++|.|++.+++.+.-.+.. ....++||.|+||+|||+++++++..+
T Consensus 3 ~~~~f~~i~Gq~~~~~~l~~~~~~-------------~~~~~vLl~G~pG~gKT~lar~la~ll 53 (334)
T PRK13407 3 KPFPFSAIVGQEEMKQAMVLTAID-------------PGIGGVLVFGDRGTGKSTAVRALAALL 53 (334)
T ss_pred CCCCHHHhCCHHHHHHHHHHHHhc-------------cCCCcEEEEcCCCCCHHHHHHHHHHHC
Confidence 367899999999999887754422 123579999999999999999999987
No 189
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=98.76 E-value=2.3e-08 Score=82.35 Aligned_cols=85 Identities=36% Similarity=0.460 Sum_probs=57.2
Q ss_pred CCCcccccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHhC--CeEEEEechhhhhh
Q psy6208 82 AVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANETG--AFFFLINGPEIMSK 159 (197)
Q Consensus 82 ~~~~~~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~~--~~~~~v~~~~~~~~ 159 (197)
....+.++|+.++.+.+--.+...-.. --.++++||.||||||||.||.++|+++| .||..++++++.+.
T Consensus 20 ~~~~~GlVGQ~~AReAagiiv~mIk~~--------K~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~isgSEiyS~ 91 (398)
T PF06068_consen 20 RYIADGLVGQEKAREAAGIIVDMIKEG--------KIAGRAILIAGPPGTGKTALAMAIAKELGEDVPFVSISGSEIYSS 91 (398)
T ss_dssp -SEETTEES-HHHHHHHHHHHHHHHTT----------TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEEEGGGG-BT
T ss_pred eeccccccChHHHHHHHHHHHHHHhcc--------cccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEcccceeeec
Confidence 444568999999998876665543111 12467899999999999999999999995 79999999999776
Q ss_pred ccCccHHHHHHHHHHH
Q psy6208 160 LAGESESNLRKAFEEA 175 (197)
Q Consensus 160 ~~~~~~~~~~~~~~~a 175 (197)
....++ .+.+.|+++
T Consensus 92 e~kKTE-~L~qa~Rra 106 (398)
T PF06068_consen 92 EVKKTE-ALTQAFRRA 106 (398)
T ss_dssp TC-HHH-HHHHHHHCS
T ss_pred ccCchH-HHHHHHHHh
Confidence 554333 444555443
No 190
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=98.75 E-value=7.9e-09 Score=92.12 Aligned_cols=49 Identities=24% Similarity=0.252 Sum_probs=39.7
Q ss_pred CCcccccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHh
Q psy6208 83 VGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANET 144 (197)
Q Consensus 83 ~~~~~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~ 144 (197)
+.|.+|+|++..+..+.-....+ ...+|||.|++|||||++|+++++.+
T Consensus 1 ~pf~~ivGq~~~~~al~~~av~~-------------~~g~vli~G~~GtgKs~lar~l~~~l 49 (633)
T TIGR02442 1 FPFTAIVGQEDLKLALLLNAVDP-------------RIGGVLIRGEKGTAKSTAARGLAALL 49 (633)
T ss_pred CCcchhcChHHHHHHHHHHhhCC-------------CCCeEEEEcCCCCcHHHHHHHHHHhC
Confidence 35789999999887776555432 23579999999999999999999887
No 191
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.74 E-value=2.7e-08 Score=88.04 Aligned_cols=66 Identities=18% Similarity=0.310 Sum_probs=52.0
Q ss_pred hHHhhcCCCCcccccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHhCCeE
Q psy6208 75 EEEEASNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFF 148 (197)
Q Consensus 75 ~~~~~~~~~~~~~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~~~~~ 148 (197)
...+...+.+++++.|++..++++..++..... +..+...++|+||+|+|||++++.+|..++..+
T Consensus 73 pW~eKyrP~~ldel~~~~~ki~~l~~~l~~~~~--------~~~~~~illL~GP~GsGKTTl~~~la~~l~~~~ 138 (637)
T TIGR00602 73 PWVEKYKPETQHELAVHKKKIEEVETWLKAQVL--------ENAPKRILLITGPSGCGKSTTIKILSKELGIQV 138 (637)
T ss_pred chHHHhCCCCHHHhcCcHHHHHHHHHHHHhccc--------ccCCCcEEEEECCCCCCHHHHHHHHHHHhhhHH
Confidence 355667788999999999999999998865321 123344589999999999999999999887544
No 192
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=98.71 E-value=9.3e-09 Score=88.52 Aligned_cols=104 Identities=23% Similarity=0.341 Sum_probs=73.2
Q ss_pred hcCCCCcccccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHhCCeE--E-----E-
Q psy6208 79 ASNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFF--F-----L- 150 (197)
Q Consensus 79 ~~~~~~~~~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~~~~~--~-----~- 150 (197)
.+.+..|+++.|++...+.|...+..- +-..+.+|+||.|+|||++||.+|+.+++.- . .
T Consensus 9 KyRP~~F~evvGQe~v~~~L~nal~~~------------ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C 76 (515)
T COG2812 9 KYRPKTFDDVVGQEHVVKTLSNALENG------------RIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKC 76 (515)
T ss_pred HhCcccHHHhcccHHHHHHHHHHHHhC------------cchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhh
Confidence 466789999999999999999998753 4566799999999999999999999986641 1 0
Q ss_pred Eechhhhhh-cc---------CccHHHHHHHHHHHh----cCCCeEEEEcccCccCcc
Q psy6208 151 INGPEIMSK-LA---------GESESNLRKAFEEAD----KNSPSIIFIDELDAIAPK 194 (197)
Q Consensus 151 v~~~~~~~~-~~---------~~~~~~~~~~~~~a~----~~~~~vl~lDeid~l~~~ 194 (197)
..|.++... +. ...-..++.+.+... .+++.|.+|||+|.|...
T Consensus 77 ~~Ck~I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~ 134 (515)
T COG2812 77 ISCKEINEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQ 134 (515)
T ss_pred hhhHhhhcCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHH
Confidence 012222111 11 112245666666553 345679999999998753
No 193
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.71 E-value=4.4e-08 Score=80.30 Aligned_cols=94 Identities=18% Similarity=0.262 Sum_probs=63.7
Q ss_pred CcccccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHhCCe--------EEEEechh
Q psy6208 84 GYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAF--------FFLINGPE 155 (197)
Q Consensus 84 ~~~~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~~~~--------~~~v~~~~ 155 (197)
+|+++.|++.+++.+.+.+..- ..++.+||+||+|+|||++|+++++.+.+. +..+...
T Consensus 2 ~~~~i~g~~~~~~~l~~~~~~~------------~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~- 68 (313)
T PRK05564 2 SFHTIIGHENIKNRIKNSIIKN------------RFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPI- 68 (313)
T ss_pred ChhhccCcHHHHHHHHHHHHcC------------CCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccc-
Confidence 6899999999999999988642 345678999999999999999999987332 2222211
Q ss_pred hhhhccCccHHHHHHHHHHHh----cCCCeEEEEcccCccCc
Q psy6208 156 IMSKLAGESESNLRKAFEEAD----KNSPSIIFIDELDAIAP 193 (197)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~a~----~~~~~vl~lDeid~l~~ 193 (197)
.+.. -.-..++.+.+.+. .+...|++|||+|.+..
T Consensus 69 -~~~~--i~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m~~ 107 (313)
T PRK05564 69 -NKKS--IGVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKMTE 107 (313)
T ss_pred -cCCC--CCHHHHHHHHHHHhcCcccCCceEEEEechhhcCH
Confidence 0000 12234555544332 24457999999998864
No 194
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.70 E-value=6.2e-08 Score=80.09 Aligned_cols=82 Identities=13% Similarity=0.208 Sum_probs=55.7
Q ss_pred cccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHhCC-------eEEEEec----hh
Q psy6208 87 DIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGA-------FFFLING----PE 155 (197)
Q Consensus 87 ~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~~~-------~~~~v~~----~~ 155 (197)
++.|+++++.++.+++...... .+ .....++|+||||+|||++|+++++.++. +++.+.. +.
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g------~~-~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~~~~~sp 124 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQG------LE-ERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKWNGEESP 124 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhc------CC-CCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEecCCCCC
Confidence 7999999999998887654211 11 23466899999999999999999999865 7777766 33
Q ss_pred hhhhccCccHHHHHHHHHHH
Q psy6208 156 IMSKLAGESESNLRKAFEEA 175 (197)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~a 175 (197)
+.....+-.....+..|...
T Consensus 125 ~~e~Pl~l~p~~~r~~~~~~ 144 (361)
T smart00763 125 MHEDPLHLFPDELREDLEDE 144 (361)
T ss_pred CccCCcccCCHHHHHHHHHH
Confidence 33332233334445555443
No 195
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=98.69 E-value=4e-08 Score=80.44 Aligned_cols=95 Identities=23% Similarity=0.321 Sum_probs=61.9
Q ss_pred cccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHhC---------------------
Q psy6208 87 DIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANETG--------------------- 145 (197)
Q Consensus 87 ~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~~--------------------- 145 (197)
++.+.+....++..++.... ..+..+||+||||+|||++|.++|+.+.
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~-----------~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~ 70 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESG-----------RLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPA 70 (325)
T ss_pred CcccchhHHHHHHHHHHhcC-----------CCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhh
Confidence 45667777777777765321 2333599999999999999999999885
Q ss_pred ---CeEEEEechhhhhhccCccHHHHHHHHHHHhc----CCCeEEEEcccCccCcc
Q psy6208 146 ---AFFFLINGPEIMSKLAGESESNLRKAFEEADK----NSPSIIFIDELDAIAPK 194 (197)
Q Consensus 146 ---~~~~~v~~~~~~~~~~~~~~~~~~~~~~~a~~----~~~~vl~lDeid~l~~~ 194 (197)
-.++.++.++..... -....++.+.+.... +...|++|||+|.|...
T Consensus 71 ~~~~d~lel~~s~~~~~~--i~~~~vr~~~~~~~~~~~~~~~kviiidead~mt~~ 124 (325)
T COG0470 71 GNHPDFLELNPSDLRKID--IIVEQVRELAEFLSESPLEGGYKVVIIDEADKLTED 124 (325)
T ss_pred cCCCceEEecccccCCCc--chHHHHHHHHHHhccCCCCCCceEEEeCcHHHHhHH
Confidence 245566655443211 123344444443322 34679999999998753
No 196
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.68 E-value=6.5e-08 Score=79.03 Aligned_cols=86 Identities=35% Similarity=0.473 Sum_probs=62.9
Q ss_pred CCCCcccccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHhC--CeEEEEechhhhh
Q psy6208 81 NAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANETG--AFFFLINGPEIMS 158 (197)
Q Consensus 81 ~~~~~~~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~~--~~~~~v~~~~~~~ 158 (197)
+...-+.++|+.++.+..--.+...-. |--..+++|+.||||||||.||-++++++| .||..++++++.+
T Consensus 34 ~k~~~dG~VGQ~~AReAaGvIv~mik~--------gk~aGrgiLi~GppgTGKTAlA~gIa~eLG~dvPF~~isgsEiYS 105 (450)
T COG1224 34 AKFIGDGLVGQEEAREAAGVIVKMIKQ--------GKMAGRGILIVGPPGTGKTALAMGIARELGEDVPFVAISGSEIYS 105 (450)
T ss_pred EeEcCCcccchHHHHHhhhHHHHHHHh--------CcccccEEEEECCCCCcHHHHHHHHHHHhCCCCCceeeccceeee
Confidence 344556799999988876554443211 123567899999999999999999999995 6999999999977
Q ss_pred hccCccHHHHHHHHHHH
Q psy6208 159 KLAGESESNLRKAFEEA 175 (197)
Q Consensus 159 ~~~~~~~~~~~~~~~~a 175 (197)
.-...++ .+.++|+++
T Consensus 106 ~E~kKTE-~L~qa~Rra 121 (450)
T COG1224 106 LEVKKTE-ALTQALRRA 121 (450)
T ss_pred ecccHHH-HHHHHHHHh
Confidence 6554443 455556655
No 197
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.65 E-value=1.2e-07 Score=80.45 Aligned_cols=76 Identities=22% Similarity=0.370 Sum_probs=46.0
Q ss_pred CCCceEEECCCCCcHHHHHHHHHHHhCC-----eEEEEec------hhhhhhcc----Ccc--HHHHHHHHHHHhc--CC
Q psy6208 119 PPRGILLYGPPGTGKTLIARAVANETGA-----FFFLING------PEIMSKLA----GES--ESNLRKAFEEADK--NS 179 (197)
Q Consensus 119 ~~~~ill~G~~GtGKT~la~ala~~~~~-----~~~~v~~------~~~~~~~~----~~~--~~~~~~~~~~a~~--~~ 179 (197)
...+++|+||||||||++|+++|..+.. ++..+.. .++...+. +.. ...+..+...|.. ..
T Consensus 193 ~~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~rP~~vgy~~~~G~f~~~~~~A~~~p~~ 272 (459)
T PRK11331 193 IKKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYRPNGVGFRRKDGIFYNFCQQAKEQPEK 272 (459)
T ss_pred cCCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccCCCCCCeEecCchHHHHHHHHHhcccC
Confidence 3568999999999999999999988742 1212221 22221111 100 1123334445543 35
Q ss_pred CeEEEEcccCccCcc
Q psy6208 180 PSIIFIDELDAIAPK 194 (197)
Q Consensus 180 ~~vl~lDeid~l~~~ 194 (197)
|.+|||||+++...+
T Consensus 273 ~~vliIDEINRani~ 287 (459)
T PRK11331 273 KYVFIIDEINRANLS 287 (459)
T ss_pred CcEEEEehhhccCHH
Confidence 789999999986644
No 198
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.64 E-value=9.2e-08 Score=79.93 Aligned_cols=51 Identities=20% Similarity=0.179 Sum_probs=44.6
Q ss_pred CCCcccccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHh
Q psy6208 82 AVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANET 144 (197)
Q Consensus 82 ~~~~~~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~ 144 (197)
+-++++|+|++.+++.+.+.+..- ..+..+||+||+|+||+++|.++|+.+
T Consensus 15 P~~~~~iiGq~~~~~~L~~~~~~~------------rl~HA~Lf~Gp~G~GK~~lA~~~A~~L 65 (365)
T PRK07471 15 PRETTALFGHAAAEAALLDAYRSG------------RLHHAWLIGGPQGIGKATLAYRMARFL 65 (365)
T ss_pred CCchhhccChHHHHHHHHHHHHcC------------CCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 557889999999999999988752 446679999999999999999999987
No 199
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=98.62 E-value=7.7e-08 Score=79.42 Aligned_cols=92 Identities=27% Similarity=0.366 Sum_probs=59.1
Q ss_pred ccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhh--hccCccH
Q psy6208 88 IGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMS--KLAGESE 165 (197)
Q Consensus 88 i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~~~~~~~v~~~~~~~--~~~~~~~ 165 (197)
+.|.++.+..+...+. ...+++|.||||+|||++++++|..++.+++.+.|..... +..|...
T Consensus 26 ~~g~~~~~~~~l~a~~---------------~~~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p~d~~G~~~ 90 (329)
T COG0714 26 VVGDEEVIELALLALL---------------AGGHVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLLGTYA 90 (329)
T ss_pred eeccHHHHHHHHHHHH---------------cCCCEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCCCHHHhcCchh
Confidence 6666666665555443 3568999999999999999999999999999999864432 2222221
Q ss_pred HHHH----HHHHHHhc--CCC--eEEEEcccCccCcc
Q psy6208 166 SNLR----KAFEEADK--NSP--SIIFIDELDAIAPK 194 (197)
Q Consensus 166 ~~~~----~~~~~a~~--~~~--~vl~lDeid~l~~~ 194 (197)
-... ..+....+ -.. .++++|||+...++
T Consensus 91 ~~~~~~~~~~~~~~~gpl~~~~~~ill~DEInra~p~ 127 (329)
T COG0714 91 YAALLLEPGEFRFVPGPLFAAVRVILLLDEINRAPPE 127 (329)
T ss_pred HhhhhccCCeEEEecCCcccccceEEEEeccccCCHH
Confidence 1110 00000000 001 39999999988765
No 200
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=98.61 E-value=3.3e-08 Score=85.55 Aligned_cols=47 Identities=28% Similarity=0.530 Sum_probs=37.4
Q ss_pred CCcccccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHh
Q psy6208 83 VGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANET 144 (197)
Q Consensus 83 ~~~~~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~ 144 (197)
..|+++.|++..++.+.-.+ ....+++|.||||+|||++++.++..+
T Consensus 189 ~d~~dv~Gq~~~~~al~~aa---------------~~g~~vlliG~pGsGKTtlar~l~~ll 235 (499)
T TIGR00368 189 LDLKDIKGQQHAKRALEIAA---------------AGGHNLLLFGPPGSGKTMLASRLQGIL 235 (499)
T ss_pred CCHHHhcCcHHHHhhhhhhc---------------cCCCEEEEEecCCCCHHHHHHHHhccc
Confidence 47889999988866654433 345689999999999999999998643
No 201
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=98.58 E-value=1.2e-07 Score=81.86 Aligned_cols=98 Identities=24% Similarity=0.377 Sum_probs=65.5
Q ss_pred CcccccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHh---CCeEEEEechhhhhh-
Q psy6208 84 GYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANET---GAFFFLINGPEIMSK- 159 (197)
Q Consensus 84 ~~~~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~---~~~~~~v~~~~~~~~- 159 (197)
.+.++.|.+..+..+.+.+... ......++|.|++||||+++|++++... +.+|+.++|..+...
T Consensus 136 ~~~~lig~s~~~~~l~~~~~~~-----------~~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~~~~ 204 (469)
T PRK10923 136 PTTDIIGEAPAMQDVFRIIGRL-----------SRSSISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDL 204 (469)
T ss_pred ccccceecCHHHHHHHHHHHHH-----------hccCCeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCCHHH
Confidence 3456777777777776666532 2456679999999999999999999987 468999999876322
Q ss_pred ----ccCccHHH-------HHHHHHHHhcCCCeEEEEcccCccCccc
Q psy6208 160 ----LAGESESN-------LRKAFEEADKNSPSIIFIDELDAIAPKR 195 (197)
Q Consensus 160 ----~~~~~~~~-------~~~~~~~a~~~~~~vl~lDeid~l~~~r 195 (197)
++|..... ....++.+ ....|||||++.|++.-
T Consensus 205 ~~~~lfg~~~g~~~~~~~~~~g~~~~a---~~Gtl~l~~i~~l~~~~ 248 (469)
T PRK10923 205 IESELFGHEKGAFTGANTIRQGRFEQA---DGGTLFLDEIGDMPLDV 248 (469)
T ss_pred HHHHhcCCCCCCCCCCCcCCCCCeeEC---CCCEEEEeccccCCHHH
Confidence 11211100 01112222 24579999999988753
No 202
>PHA00729 NTP-binding motif containing protein
Probab=98.58 E-value=6.6e-08 Score=75.16 Aligned_cols=25 Identities=32% Similarity=0.466 Sum_probs=22.8
Q ss_pred CceEEECCCCCcHHHHHHHHHHHhC
Q psy6208 121 RGILLYGPPGTGKTLIARAVANETG 145 (197)
Q Consensus 121 ~~ill~G~~GtGKT~la~ala~~~~ 145 (197)
.+++|+|+|||||||+|.+++..++
T Consensus 18 ~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4799999999999999999998864
No 203
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.58 E-value=2.3e-07 Score=77.21 Aligned_cols=53 Identities=23% Similarity=0.240 Sum_probs=45.5
Q ss_pred CCCcccccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHhCC
Q psy6208 82 AVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGA 146 (197)
Q Consensus 82 ~~~~~~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~~~ 146 (197)
+-.+++++|++.+.+.+...+..- ..+..+||+||+|+|||++|+.+++.+.+
T Consensus 19 P~~~~~l~Gh~~a~~~L~~a~~~g------------rl~ha~L~~G~~G~GKttlA~~lA~~Llc 71 (351)
T PRK09112 19 PSENTRLFGHEEAEAFLAQAYREG------------KLHHALLFEGPEGIGKATLAFHLANHILS 71 (351)
T ss_pred CCchhhccCcHHHHHHHHHHHHcC------------CCCeeEeeECCCCCCHHHHHHHHHHHHcC
Confidence 567889999999999999988752 44567999999999999999999998854
No 204
>KOG1051|consensus
Probab=98.53 E-value=4.2e-07 Score=82.58 Aligned_cols=101 Identities=22% Similarity=0.338 Sum_probs=72.1
Q ss_pred ccccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHh---CCeEEEEechhhhh----
Q psy6208 86 DDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANET---GAFFFLINGPEIMS---- 158 (197)
Q Consensus 86 ~~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~---~~~~~~v~~~~~~~---- 158 (197)
+.|+|+++++..+-+++...-..- .+. .+...++|.||.|+|||-||+++|..+ .-.++.++.+++..
T Consensus 562 ~~V~gQ~eAv~aIa~AI~~sr~gl--~~~---~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriDmse~~evskl 636 (898)
T KOG1051|consen 562 ERVIGQDEAVAAIAAAIRRSRAGL--KDP---NPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLDMSEFQEVSKL 636 (898)
T ss_pred hhccchHHHHHHHHHHHHhhhccc--CCC---CCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEechhhhhhhhhc
Confidence 358999999999999987542110 000 245668999999999999999999987 44788999886432
Q ss_pred -----hccCccHHHHHHHHHHHhcCCCeEEEEcccCccCc
Q psy6208 159 -----KLAGESESNLRKAFEEADKNSPSIIFIDELDAIAP 193 (197)
Q Consensus 159 -----~~~~~~~~~~~~~~~~a~~~~~~vl~lDeid~l~~ 193 (197)
.|.|..+ ...+.+..++...+||+|||||.--+
T Consensus 637 igsp~gyvG~e~--gg~LteavrrrP~sVVLfdeIEkAh~ 674 (898)
T KOG1051|consen 637 IGSPPGYVGKEE--GGQLTEAVKRRPYSVVLFEEIEKAHP 674 (898)
T ss_pred cCCCcccccchh--HHHHHHHHhcCCceEEEEechhhcCH
Confidence 1333333 23556666677779999999997543
No 205
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=98.53 E-value=3.4e-08 Score=84.61 Aligned_cols=98 Identities=23% Similarity=0.304 Sum_probs=65.8
Q ss_pred CcccccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHh---CCeEEEEechhhhhhc
Q psy6208 84 GYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANET---GAFFFLINGPEIMSKL 160 (197)
Q Consensus 84 ~~~~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~---~~~~~~v~~~~~~~~~ 160 (197)
.+.++.|.+..+.++.+.+... .....+++|+|++||||+++|++++... +.+++.++|..+....
T Consensus 137 ~~~~lig~s~~~~~l~~~i~~~-----------a~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~~~~ 205 (445)
T TIGR02915 137 ALRGLITSSPGMQKICRTIEKI-----------APSDITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPENL 205 (445)
T ss_pred cccceeecCHHHHHHHHHHHHH-----------hCCCCCEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCChHH
Confidence 3456778887777777766532 2345679999999999999999999876 4689999998763221
Q ss_pred -----cCccHH-------HHHHHHHHHhcCCCeEEEEcccCccCccc
Q psy6208 161 -----AGESES-------NLRKAFEEADKNSPSIIFIDELDAIAPKR 195 (197)
Q Consensus 161 -----~~~~~~-------~~~~~~~~a~~~~~~vl~lDeid~l~~~r 195 (197)
+|.... ...+.++.+ ...+|||||++.|++.-
T Consensus 206 ~~~~lfg~~~~~~~~~~~~~~g~~~~a---~~gtl~l~~i~~l~~~~ 249 (445)
T TIGR02915 206 LESELFGYEKGAFTGAVKQTLGKIEYA---HGGTLFLDEIGDLPLNL 249 (445)
T ss_pred HHHHhcCCCCCCcCCCccCCCCceeEC---CCCEEEEechhhCCHHH
Confidence 111100 001112222 34689999999998753
No 206
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.53 E-value=3.8e-07 Score=66.70 Aligned_cols=71 Identities=30% Similarity=0.478 Sum_probs=46.8
Q ss_pred eEEECCCCCcHHHHHHHHHHHh---CCeEEEEechhhhhhc----------------------cCc--cHHHHHHHHHHH
Q psy6208 123 ILLYGPPGTGKTLIARAVANET---GAFFFLINGPEIMSKL----------------------AGE--SESNLRKAFEEA 175 (197)
Q Consensus 123 ill~G~~GtGKT~la~ala~~~---~~~~~~v~~~~~~~~~----------------------~~~--~~~~~~~~~~~a 175 (197)
++|+|+||+|||+++..++... +.++++++........ ... ...........+
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKAERLR 81 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHHHHHHHHH
Confidence 6899999999999999998776 5677777764332211 000 111112223445
Q ss_pred hcCCCeEEEEcccCccCc
Q psy6208 176 DKNSPSIIFIDELDAIAP 193 (197)
Q Consensus 176 ~~~~~~vl~lDeid~l~~ 193 (197)
....+.+++|||+..+..
T Consensus 82 ~~~~~~~lviDe~~~~~~ 99 (165)
T cd01120 82 ERGGDDLIILDELTRLVR 99 (165)
T ss_pred hCCCCEEEEEEcHHHHHH
Confidence 566789999999997643
No 207
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=98.52 E-value=2.8e-08 Score=83.92 Aligned_cols=47 Identities=30% Similarity=0.528 Sum_probs=39.4
Q ss_pred CCCcccccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHH
Q psy6208 82 AVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANE 143 (197)
Q Consensus 82 ~~~~~~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~ 143 (197)
...|.|+.|++.+++.+.-... ...++|++||||||||++|+.+...
T Consensus 175 ~~D~~DV~GQ~~AKrAleiAAA---------------GgHnLl~~GpPGtGKTmla~Rl~~l 221 (490)
T COG0606 175 APDFKDVKGQEQAKRALEIAAA---------------GGHNLLLVGPPGTGKTMLASRLPGL 221 (490)
T ss_pred CcchhhhcCcHHHHHHHHHHHh---------------cCCcEEEecCCCCchHHhhhhhccc
Confidence 3478899999999998877653 4679999999999999999988543
No 208
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.51 E-value=6e-07 Score=68.16 Aligned_cols=76 Identities=18% Similarity=0.212 Sum_probs=45.5
Q ss_pred CCCceEEECCCCCcHHHHHHHHHHHhCCe-------E-EEEechhhhhh----------cc-CccHHHHHHHHHHHhc--
Q psy6208 119 PPRGILLYGPPGTGKTLIARAVANETGAF-------F-FLINGPEIMSK----------LA-GESESNLRKAFEEADK-- 177 (197)
Q Consensus 119 ~~~~ill~G~~GtGKT~la~ala~~~~~~-------~-~~v~~~~~~~~----------~~-~~~~~~~~~~~~~a~~-- 177 (197)
.+..+||+||+|+|||++++++++.+.+. . ...+|..+... .. .-....++.+.+.+..
T Consensus 13 ~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~~~~ 92 (188)
T TIGR00678 13 LAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEGQSIKVDQVRELVEFLSRTP 92 (188)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccccCcCCHHHHHHHHHHHccCc
Confidence 45679999999999999999999987432 0 00011111000 00 0122345545554433
Q ss_pred --CCCeEEEEcccCccCcc
Q psy6208 178 --NSPSIIFIDELDAIAPK 194 (197)
Q Consensus 178 --~~~~vl~lDeid~l~~~ 194 (197)
+...|++|||+|.|...
T Consensus 93 ~~~~~kviiide~~~l~~~ 111 (188)
T TIGR00678 93 QESGRRVVIIEDAERMNEA 111 (188)
T ss_pred ccCCeEEEEEechhhhCHH
Confidence 34679999999998753
No 209
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=98.47 E-value=3.7e-07 Score=78.42 Aligned_cols=98 Identities=22% Similarity=0.317 Sum_probs=64.7
Q ss_pred CcccccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHh---CCeEEEEechhhhhhc
Q psy6208 84 GYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANET---GAFFFLINGPEIMSKL 160 (197)
Q Consensus 84 ~~~~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~---~~~~~~v~~~~~~~~~ 160 (197)
.+..+.|.+..+..+.+.+... .....+++++|++||||+++|++++... +.+++.++|..+....
T Consensus 141 ~~~~ii~~S~~~~~~~~~~~~~-----------a~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~~~~ 209 (457)
T PRK11361 141 QWGHILTNSPAMMDICKDTAKI-----------ALSQASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPESL 209 (457)
T ss_pred cccceecccHHHhHHHHHHHHH-----------cCCCcEEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCCHHH
Confidence 3455777777777766655433 2445679999999999999999998876 4689999998764321
Q ss_pred -----cCccHHH-------HHHHHHHHhcCCCeEEEEcccCccCccc
Q psy6208 161 -----AGESESN-------LRKAFEEADKNSPSIIFIDELDAIAPKR 195 (197)
Q Consensus 161 -----~~~~~~~-------~~~~~~~a~~~~~~vl~lDeid~l~~~r 195 (197)
+|..... ..+.++.+ ...+|||||++.|++..
T Consensus 210 ~~~~lfg~~~~~~~~~~~~~~g~~~~a---~~gtl~ld~i~~l~~~~ 253 (457)
T PRK11361 210 LESELFGHEKGAFTGAQTLRQGLFERA---NEGTLLLDEIGEMPLVL 253 (457)
T ss_pred HHHHhcCCCCCCCCCCCCCCCCceEEC---CCCEEEEechhhCCHHH
Confidence 1111000 01122222 24589999999998753
No 210
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=98.44 E-value=3.3e-07 Score=75.15 Aligned_cols=49 Identities=16% Similarity=0.287 Sum_probs=43.3
Q ss_pred CcccccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHh
Q psy6208 84 GYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANET 144 (197)
Q Consensus 84 ~~~~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~ 144 (197)
.|++|+|++.+++.+.+.+..- .-++.+||+||+|+||+++|.++++.+
T Consensus 2 ~f~~iiGq~~~~~~L~~~i~~~------------rl~ha~Lf~G~~G~Gk~~~A~~~a~~l 50 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIKQN------------RIAPAYLFAGPEGVGRKLAALCFIEGL 50 (314)
T ss_pred cHHHhCCHHHHHHHHHHHHHhC------------CCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 4789999999999999998752 346789999999999999999999887
No 211
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=98.43 E-value=2.9e-07 Score=76.08 Aligned_cols=49 Identities=24% Similarity=0.251 Sum_probs=39.7
Q ss_pred CCcccccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHh
Q psy6208 83 VGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANET 144 (197)
Q Consensus 83 ~~~~~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~ 144 (197)
+.|..|+|++..+..+.-.+.. +...+++|.|++|+|||+++++++..+
T Consensus 1 ~pf~~ivgq~~~~~al~~~~~~-------------~~~g~vli~G~~G~gKttl~r~~~~~~ 49 (337)
T TIGR02030 1 FPFTAIVGQDEMKLALLLNVID-------------PKIGGVMVMGDRGTGKSTAVRALAALL 49 (337)
T ss_pred CCccccccHHHHHHHHHHHhcC-------------CCCCeEEEEcCCCCCHHHHHHHHHHhh
Confidence 3578899999999887655533 234679999999999999999999776
No 212
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=98.43 E-value=4.5e-07 Score=74.90 Aligned_cols=50 Identities=16% Similarity=0.201 Sum_probs=41.2
Q ss_pred CcccccC-cHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHhC
Q psy6208 84 GYDDIGG-CRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANETG 145 (197)
Q Consensus 84 ~~~~i~g-~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~~ 145 (197)
.|++|.| ++.+++.+.+.+..- ..++.+||+||+|+||+++|+++++.+.
T Consensus 3 ~~~~i~~~q~~~~~~L~~~~~~~------------~l~ha~Lf~G~~G~gk~~~a~~la~~l~ 53 (329)
T PRK08058 3 TWEQLTALQPVVVKMLQNSIAKN------------RLSHAYLFEGAKGTGKKATALWLAKSLF 53 (329)
T ss_pred cHHHHHhhHHHHHHHHHHHHHcC------------CCCceEEEECCCCCCHHHHHHHHHHHHC
Confidence 4777777 888999998887642 4466789999999999999999998873
No 213
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=98.40 E-value=9.3e-07 Score=68.15 Aligned_cols=77 Identities=27% Similarity=0.454 Sum_probs=50.4
Q ss_pred CCCCCCceEEECCCCCcHHHHHHHHHHHh---CCeEEEEechhhhhh-cc---C-------------------ccHHHHH
Q psy6208 116 GVKPPRGILLYGPPGTGKTLIARAVANET---GAFFFLINGPEIMSK-LA---G-------------------ESESNLR 169 (197)
Q Consensus 116 ~~~~~~~ill~G~~GtGKT~la~ala~~~---~~~~~~v~~~~~~~~-~~---~-------------------~~~~~~~ 169 (197)
|+....-++|+||||+|||+++..++... +.+++++++.++... +. . +....+.
T Consensus 8 Gi~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~~~~~rl~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 87 (209)
T TIGR02237 8 GVERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEGLSPERFKQIAEDRPERALSNFIVFEVFDFDEQGVAIQ 87 (209)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHhChHHHhcCEEEEECCCHHHHHHHHH
Confidence 45666778999999999999999987654 678899988652110 00 0 0011123
Q ss_pred HHHHHHhcCCCeEEEEcccCccC
Q psy6208 170 KAFEEADKNSPSIIFIDELDAIA 192 (197)
Q Consensus 170 ~~~~~a~~~~~~vl~lDeid~l~ 192 (197)
.+.+......+++|+||-+..+.
T Consensus 88 ~l~~~~~~~~~~lvVIDSis~l~ 110 (209)
T TIGR02237 88 KTSKFIDRDSASLVVVDSFTALY 110 (209)
T ss_pred HHHHHHhhcCccEEEEeCcHHHh
Confidence 33333444468999999998774
No 214
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=98.40 E-value=1.6e-06 Score=69.50 Aligned_cols=94 Identities=19% Similarity=0.342 Sum_probs=61.4
Q ss_pred CCcccccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHhC---CeEEEEec-hhhhh
Q psy6208 83 VGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANETG---AFFFLING-PEIMS 158 (197)
Q Consensus 83 ~~~~~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~~---~~~~~v~~-~~~~~ 158 (197)
.++++++-.....+.+.+++.. ....++|.|++|+|||++++++..... ..++.+.- .++.-
T Consensus 57 ~~l~~lg~~~~~~~~l~~~~~~--------------~~GlilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~~~ 122 (264)
T cd01129 57 LDLEKLGLKPENLEIFRKLLEK--------------PHGIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEYQI 122 (264)
T ss_pred CCHHHcCCCHHHHHHHHHHHhc--------------CCCEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCceecC
Confidence 4567777667777777666532 344689999999999999999977663 34555432 12211
Q ss_pred h------ccCccHHHHHHHHHHHhcCCCeEEEEcccCc
Q psy6208 159 K------LAGESESNLRKAFEEADKNSPSIIFIDELDA 190 (197)
Q Consensus 159 ~------~~~~~~~~~~~~~~~a~~~~~~vl~lDeid~ 190 (197)
. ............++.+.+..|++|+++|+..
T Consensus 123 ~~~~q~~v~~~~~~~~~~~l~~~lR~~PD~i~vgEiR~ 160 (264)
T cd01129 123 PGINQVQVNEKAGLTFARGLRAILRQDPDIIMVGEIRD 160 (264)
T ss_pred CCceEEEeCCcCCcCHHHHHHHHhccCCCEEEeccCCC
Confidence 0 0111112456677777888999999999854
No 215
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=98.37 E-value=8.6e-07 Score=74.65 Aligned_cols=67 Identities=18% Similarity=0.314 Sum_probs=45.9
Q ss_pred CCCCceEEECCCCCcHHHHHHHHHHHh----CCeEEEEechhhhhhccCccHHHHHHHHHHHhcCCCeEEEEcccCccCc
Q psy6208 118 KPPRGILLYGPPGTGKTLIARAVANET----GAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPSIIFIDELDAIAP 193 (197)
Q Consensus 118 ~~~~~ill~G~~GtGKT~la~ala~~~----~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~vl~lDeid~l~~ 193 (197)
..+.++++.||+||||||++.+++... | .+++.+.+...+.. ..+.. -..+++|+|||+..+.-
T Consensus 207 e~~~Nli~lGp~GTGKThla~~l~~~~a~~sG---~f~T~a~Lf~~L~~-------~~lg~--v~~~DlLI~DEvgylp~ 274 (449)
T TIGR02688 207 EPNYNLIELGPKGTGKSYIYNNLSPYVILISG---GTITVAKLFYNIST-------RQIGL--VGRWDVVAFDEVATLKF 274 (449)
T ss_pred hcCCcEEEECCCCCCHHHHHHHHhHHHHHHcC---CcCcHHHHHHHHHH-------HHHhh--hccCCEEEEEcCCCCcC
Confidence 567899999999999999999987662 3 34455555443221 11121 23478999999999776
Q ss_pred ccC
Q psy6208 194 KRE 196 (197)
Q Consensus 194 ~r~ 196 (197)
.++
T Consensus 275 ~~~ 277 (449)
T TIGR02688 275 AKP 277 (449)
T ss_pred Cch
Confidence 543
No 216
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.37 E-value=2.5e-06 Score=72.92 Aligned_cols=96 Identities=23% Similarity=0.341 Sum_probs=64.4
Q ss_pred CCCCcccccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHhCCe---EEEEech-hh
Q psy6208 81 NAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAF---FFLINGP-EI 156 (197)
Q Consensus 81 ~~~~~~~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~~~~---~~~v~~~-~~ 156 (197)
...++++++........+.+.+.. +..-+|++||+|+|||+.+.++.+.++.+ ++.+.-+ +.
T Consensus 233 ~~l~l~~Lg~~~~~~~~~~~~~~~--------------p~GliLvTGPTGSGKTTTLY~~L~~ln~~~~nI~TiEDPVE~ 298 (500)
T COG2804 233 VILDLEKLGMSPFQLARLLRLLNR--------------PQGLILVTGPTGSGKTTTLYAALSELNTPERNIITIEDPVEY 298 (500)
T ss_pred ccCCHHHhCCCHHHHHHHHHHHhC--------------CCeEEEEeCCCCCCHHHHHHHHHHHhcCCCceEEEeeCCeee
Confidence 357788899888888888888753 34457899999999999999998888543 3332211 11
Q ss_pred hhhc-----c-CccHHHHHHHHHHHhcCCCeEEEEcccCc
Q psy6208 157 MSKL-----A-GESESNLRKAFEEADKNSPSIIFIDELDA 190 (197)
Q Consensus 157 ~~~~-----~-~~~~~~~~~~~~~a~~~~~~vl~lDeid~ 190 (197)
.-.- + ....-.....++...+..|+||++.||..
T Consensus 299 ~~~gI~Q~qVN~k~gltfa~~LRa~LRqDPDvImVGEIRD 338 (500)
T COG2804 299 QLPGINQVQVNPKIGLTFARALRAILRQDPDVIMVGEIRD 338 (500)
T ss_pred ecCCcceeecccccCCCHHHHHHHHhccCCCeEEEeccCC
Confidence 1000 0 01111234556667778999999999864
No 217
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=98.36 E-value=4.7e-07 Score=63.55 Aligned_cols=31 Identities=32% Similarity=0.688 Sum_probs=28.1
Q ss_pred eEEECCCCCcHHHHHHHHHHHhCCeEEEEec
Q psy6208 123 ILLYGPPGTGKTLIARAVANETGAFFFLING 153 (197)
Q Consensus 123 ill~G~~GtGKT~la~ala~~~~~~~~~v~~ 153 (197)
|+|.|+||+||||+|+.+++.++.+++.++.
T Consensus 2 I~I~G~~gsGKST~a~~La~~~~~~~i~~d~ 32 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERLGFPVISMDD 32 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTCEEEEEHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeEEEecc
Confidence 7899999999999999999999988876665
No 218
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.35 E-value=7.3e-07 Score=69.09 Aligned_cols=43 Identities=44% Similarity=0.727 Sum_probs=33.5
Q ss_pred cCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHh
Q psy6208 89 GGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANET 144 (197)
Q Consensus 89 ~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~ 144 (197)
.|.+..+++|.+++.. .....++|+||.|+|||+|++.+.+..
T Consensus 2 ~gR~~el~~l~~~l~~-------------~~~~~~~l~G~rg~GKTsLl~~~~~~~ 44 (234)
T PF01637_consen 2 FGREKELEKLKELLES-------------GPSQHILLYGPRGSGKTSLLKEFINEL 44 (234)
T ss_dssp -S-HHHHHHHHHCHHH---------------SSEEEEEESTTSSHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHh-------------hcCcEEEEEcCCcCCHHHHHHHHHHHh
Confidence 5777788888777653 345679999999999999999999887
No 219
>PRK15115 response regulator GlrR; Provisional
Probab=98.35 E-value=9.4e-07 Score=75.69 Aligned_cols=75 Identities=27% Similarity=0.473 Sum_probs=50.8
Q ss_pred CCCCceEEECCCCCcHHHHHHHHHHHh---CCeEEEEechhhhhhc-----cCccHH-------HHHHHHHHHhcCCCeE
Q psy6208 118 KPPRGILLYGPPGTGKTLIARAVANET---GAFFFLINGPEIMSKL-----AGESES-------NLRKAFEEADKNSPSI 182 (197)
Q Consensus 118 ~~~~~ill~G~~GtGKT~la~ala~~~---~~~~~~v~~~~~~~~~-----~~~~~~-------~~~~~~~~a~~~~~~v 182 (197)
.....++|+|++|+|||++|+++++.. +.+++.++|..+.... +|.... ...+.++.+ ...+
T Consensus 155 ~~~~~vli~Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a---~~gt 231 (444)
T PRK15115 155 QSDVSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAA---EGGT 231 (444)
T ss_pred cCCCeEEEEcCCcchHHHHHHHHHHhcCCCCCCeEEEeCCCCCHHHHHHHhcCCCcCCCCCCccCCCCcEEEC---CCCE
Confidence 345679999999999999999999886 4689999998763321 111000 000112222 2458
Q ss_pred EEEcccCccCccc
Q psy6208 183 IFIDELDAIAPKR 195 (197)
Q Consensus 183 l~lDeid~l~~~r 195 (197)
|||||||.|++..
T Consensus 232 l~l~~i~~l~~~~ 244 (444)
T PRK15115 232 LFLDEIGDMPAPL 244 (444)
T ss_pred EEEEccccCCHHH
Confidence 9999999998764
No 220
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=98.34 E-value=5.5e-07 Score=73.41 Aligned_cols=71 Identities=21% Similarity=0.366 Sum_probs=48.8
Q ss_pred CCCceEEECCCCCcHHHHHHHHHHHh-----CCeEEEEec-hhhhhh-------ccCccHHHHHHHHHHHhcCCCeEEEE
Q psy6208 119 PPRGILLYGPPGTGKTLIARAVANET-----GAFFFLING-PEIMSK-------LAGESESNLRKAFEEADKNSPSIIFI 185 (197)
Q Consensus 119 ~~~~ill~G~~GtGKT~la~ala~~~-----~~~~~~v~~-~~~~~~-------~~~~~~~~~~~~~~~a~~~~~~vl~l 185 (197)
...++++.|++|+|||++++++.... +..++.+.- .++.-. ...........+++.+.+..|+.|++
T Consensus 131 ~~~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El~~~~~~~v~~~~~~~~~~~~~~l~~aLR~~pD~iiv 210 (299)
T TIGR02782 131 ARKNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTRELQCAAPNVVQLRTSDDAISMTRLLKATLRLRPDRIIV 210 (299)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhhcCCCCCEEEEEecCCCCCHHHHHHHHhcCCCCEEEE
Confidence 45689999999999999999999876 234444432 122100 01111125677888888899999999
Q ss_pred cccC
Q psy6208 186 DELD 189 (197)
Q Consensus 186 Deid 189 (197)
.|+-
T Consensus 211 GEiR 214 (299)
T TIGR02782 211 GEVR 214 (299)
T ss_pred eccC
Confidence 9985
No 221
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.34 E-value=5.2e-06 Score=66.30 Aligned_cols=26 Identities=31% Similarity=0.408 Sum_probs=22.9
Q ss_pred CCceEEECCCCCcHHHHHHHHHHHhC
Q psy6208 120 PRGILLYGPPGTGKTLIARAVANETG 145 (197)
Q Consensus 120 ~~~ill~G~~GtGKT~la~ala~~~~ 145 (197)
...++|+||+|+|||++++.+++.+.
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~ 68 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLD 68 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcC
Confidence 34588999999999999999999875
No 222
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=98.34 E-value=6.1e-07 Score=71.99 Aligned_cols=98 Identities=24% Similarity=0.423 Sum_probs=61.8
Q ss_pred CCCcccccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHh--C-CeEEEEec-hhhh
Q psy6208 82 AVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANET--G-AFFFLING-PEIM 157 (197)
Q Consensus 82 ~~~~~~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~--~-~~~~~v~~-~~~~ 157 (197)
.+++++++-.....+.+.+++... +....++++.|++|+|||+++.++.... . .+++.+.- .++.
T Consensus 100 ~~sle~l~~~~~~~~~~~~~l~~~-----------v~~~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E~~ 168 (270)
T PF00437_consen 100 PFSLEDLGESGSIPEEIAEFLRSA-----------VRGRGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPELR 168 (270)
T ss_dssp --CHCCCCHTHHCHHHHHHHHHHC-----------HHTTEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-S-
T ss_pred cccHhhccCchhhHHHHHHHHhhc-----------cccceEEEEECCCccccchHHHHHhhhccccccceEEecccccee
Confidence 567777776666666666666543 2346689999999999999999999877 2 45555442 2221
Q ss_pred hh------cc-CccHHHHHHHHHHHhcCCCeEEEEcccCc
Q psy6208 158 SK------LA-GESESNLRKAFEEADKNSPSIIFIDELDA 190 (197)
Q Consensus 158 ~~------~~-~~~~~~~~~~~~~a~~~~~~vl~lDeid~ 190 (197)
-. +. .........++..+.+..|++|+++|+..
T Consensus 169 l~~~~~~~~~~~~~~~~~~~~l~~~LR~~pD~iiigEiR~ 208 (270)
T PF00437_consen 169 LPGPNQIQIQTRRDEISYEDLLKSALRQDPDVIIIGEIRD 208 (270)
T ss_dssp -SCSSEEEEEEETTTBSHHHHHHHHTTS--SEEEESCE-S
T ss_pred ecccceEEEEeecCcccHHHHHHHHhcCCCCcccccccCC
Confidence 11 00 11233456777888888999999999864
No 223
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=98.34 E-value=1.6e-06 Score=68.04 Aligned_cols=68 Identities=26% Similarity=0.408 Sum_probs=50.6
Q ss_pred CCCceEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhhhccCccHHHHHHHHHHHhcCCCeEEEEcccCccCc
Q psy6208 119 PPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPSIIFIDELDAIAP 193 (197)
Q Consensus 119 ~~~~ill~G~~GtGKT~la~ala~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~vl~lDeid~l~~ 193 (197)
...+-.+.||+|||||..++.+|+.+|+.++.++|++-++ ...+.+++.-+... -+.+++||++.|..
T Consensus 31 ~~~~~~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~~------~~~l~ril~G~~~~-GaW~cfdefnrl~~ 98 (231)
T PF12774_consen 31 LNLGGALSGPAGTGKTETIKDLARALGRFVVVFNCSEQMD------YQSLSRILKGLAQS-GAWLCFDEFNRLSE 98 (231)
T ss_dssp TTTEEEEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS-------HHHHHHHHHHHHHH-T-EEEEETCCCSSH
T ss_pred cCCCCCCcCCCCCCchhHHHHHHHHhCCeEEEeccccccc------HHHHHHHHHHHhhc-CchhhhhhhhhhhH
Confidence 4556789999999999999999999999999999987643 33455566544332 46899999998864
No 224
>PRK08118 topology modulation protein; Reviewed
Probab=98.33 E-value=1.9e-06 Score=64.42 Aligned_cols=32 Identities=25% Similarity=0.467 Sum_probs=29.5
Q ss_pred ceEEECCCCCcHHHHHHHHHHHhCCeEEEEec
Q psy6208 122 GILLYGPPGTGKTLIARAVANETGAFFFLING 153 (197)
Q Consensus 122 ~ill~G~~GtGKT~la~ala~~~~~~~~~v~~ 153 (197)
.|+|.|+||+||||+|+.|++.++.+++.++.
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~ 34 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDA 34 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecch
Confidence 58999999999999999999999999887774
No 225
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=98.33 E-value=1.5e-06 Score=66.62 Aligned_cols=68 Identities=24% Similarity=0.460 Sum_probs=43.6
Q ss_pred ceEEECCCCCcHHHHHHHHHHHhC----CeEEEEech-hhhhh---------ccCccHHHHHHHHHHHhcCCCeEEEEcc
Q psy6208 122 GILLYGPPGTGKTLIARAVANETG----AFFFLINGP-EIMSK---------LAGESESNLRKAFEEADKNSPSIIFIDE 187 (197)
Q Consensus 122 ~ill~G~~GtGKT~la~ala~~~~----~~~~~v~~~-~~~~~---------~~~~~~~~~~~~~~~a~~~~~~vl~lDe 187 (197)
-++|.||+|+|||+++++++.... ..++.+..+ ++... ..+.....+...++.+.+..|+++++||
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E~~~~~~~~~i~q~~vg~~~~~~~~~i~~aLr~~pd~ii~gE 82 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEFVHESKRSLINQREVGLDTLSFENALKAALRQDPDVILVGE 82 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCccccccCccceeeecccCCCccCHHHHHHHHhcCCcCEEEEcC
Confidence 479999999999999999887763 233333221 21110 0121223355566677777899999999
Q ss_pred cC
Q psy6208 188 LD 189 (197)
Q Consensus 188 id 189 (197)
+.
T Consensus 83 ir 84 (198)
T cd01131 83 MR 84 (198)
T ss_pred CC
Confidence 83
No 226
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.32 E-value=2.2e-06 Score=62.89 Aligned_cols=26 Identities=31% Similarity=0.507 Sum_probs=23.0
Q ss_pred CCCceEEECCCCCcHHHHHHHHHHHh
Q psy6208 119 PPRGILLYGPPGTGKTLIARAVANET 144 (197)
Q Consensus 119 ~~~~ill~G~~GtGKT~la~ala~~~ 144 (197)
....++++|+||+|||+++..++..+
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e~L 29 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAEKL 29 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHH
Confidence 34569999999999999999999877
No 227
>PRK07261 topology modulation protein; Provisional
Probab=98.32 E-value=2e-06 Score=64.52 Aligned_cols=33 Identities=21% Similarity=0.368 Sum_probs=28.7
Q ss_pred ceEEECCCCCcHHHHHHHHHHHhCCeEEEEech
Q psy6208 122 GILLYGPPGTGKTLIARAVANETGAFFFLINGP 154 (197)
Q Consensus 122 ~ill~G~~GtGKT~la~ala~~~~~~~~~v~~~ 154 (197)
.|+|.|+||+|||++|+.++..++.+++..+.-
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~ 34 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTL 34 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCE
Confidence 489999999999999999999998887776643
No 228
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=98.32 E-value=1.4e-06 Score=75.82 Aligned_cols=69 Identities=25% Similarity=0.301 Sum_probs=54.2
Q ss_pred HHhhcCCCCcccccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHhCCeEEEEe
Q psy6208 76 EEEASNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLIN 152 (197)
Q Consensus 76 ~~~~~~~~~~~~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~~~~~~~v~ 152 (197)
+-+...+.+.+++.-..+-+++++.++...+.. ....+-++|+||+|||||++++.+|++++..+....
T Consensus 9 W~~ky~P~~~~eLavhkkKv~eV~~wl~~~~~~--------~~~~~iLlLtGP~G~GKtttv~~La~elg~~v~Ew~ 77 (519)
T PF03215_consen 9 WVEKYAPKTLDELAVHKKKVEEVRSWLEEMFSG--------SSPKRILLLTGPSGCGKTTTVKVLAKELGFEVQEWI 77 (519)
T ss_pred cchhcCCCCHHHhhccHHHHHHHHHHHHHHhcc--------CCCcceEEEECCCCCCHHHHHHHHHHHhCCeeEEec
Confidence 344566788899999999999999999754221 123446789999999999999999999988777653
No 229
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=98.31 E-value=1.9e-06 Score=71.58 Aligned_cols=71 Identities=25% Similarity=0.462 Sum_probs=47.0
Q ss_pred CCCceEEECCCCCcHHHHHHHHHHHhC----CeEEEEech-hhhh---------hccCccHHHHHHHHHHHhcCCCeEEE
Q psy6208 119 PPRGILLYGPPGTGKTLIARAVANETG----AFFFLINGP-EIMS---------KLAGESESNLRKAFEEADKNSPSIIF 184 (197)
Q Consensus 119 ~~~~ill~G~~GtGKT~la~ala~~~~----~~~~~v~~~-~~~~---------~~~~~~~~~~~~~~~~a~~~~~~vl~ 184 (197)
+...++|.||+|+|||++++++..... ..++.+.-+ ++.. ...+.........++.+.+..|++|+
T Consensus 121 ~~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~~~~~~~~i~q~evg~~~~~~~~~l~~~lr~~pd~i~ 200 (343)
T TIGR01420 121 PRGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYVHRNKRSLINQREVGLDTLSFANALRAALREDPDVIL 200 (343)
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhhccCccceEEccccCCCCcCHHHHHHHhhccCCCEEE
Confidence 345689999999999999999988663 334444221 2210 01122222456667777788999999
Q ss_pred EcccC
Q psy6208 185 IDELD 189 (197)
Q Consensus 185 lDeid 189 (197)
+||+.
T Consensus 201 vgEir 205 (343)
T TIGR01420 201 IGEMR 205 (343)
T ss_pred EeCCC
Confidence 99984
No 230
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.31 E-value=4e-06 Score=67.34 Aligned_cols=73 Identities=25% Similarity=0.488 Sum_probs=51.1
Q ss_pred CCCCceEEECCCCCcHHHHHHHHHHHhCC----eEEEEech-h--------hh-hhccCccHHHHHHHHHHHhcCCCeEE
Q psy6208 118 KPPRGILLYGPPGTGKTLIARAVANETGA----FFFLINGP-E--------IM-SKLAGESESNLRKAFEEADKNSPSII 183 (197)
Q Consensus 118 ~~~~~ill~G~~GtGKT~la~ala~~~~~----~~~~v~~~-~--------~~-~~~~~~~~~~~~~~~~~a~~~~~~vl 183 (197)
.+..-||++||+|+|||+.+.++....|. +.+.+.-+ + +. ..-+|.........++.|.+..|+||
T Consensus 123 ~~~GLILVTGpTGSGKSTTlAamId~iN~~~~~HIlTIEDPIE~vh~skkslI~QREvG~dT~sF~~aLraALReDPDVI 202 (353)
T COG2805 123 SPRGLILVTGPTGSGKSTTLAAMIDYINKHKAKHILTIEDPIEYVHESKKSLINQREVGRDTLSFANALRAALREDPDVI 202 (353)
T ss_pred CCCceEEEeCCCCCcHHHHHHHHHHHHhccCCcceEEecCchHhhhcchHhhhhHHHhcccHHHHHHHHHHHhhcCCCEE
Confidence 34455899999999999999999887743 34443321 1 11 22345555666777888888899999
Q ss_pred EEcccCc
Q psy6208 184 FIDELDA 190 (197)
Q Consensus 184 ~lDeid~ 190 (197)
++-|+-.
T Consensus 203 lvGEmRD 209 (353)
T COG2805 203 LVGEMRD 209 (353)
T ss_pred EEecccc
Confidence 9999754
No 231
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=98.31 E-value=2.4e-06 Score=63.55 Aligned_cols=90 Identities=23% Similarity=0.375 Sum_probs=56.0
Q ss_pred CcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHhCCe----------------------
Q psy6208 90 GCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAF---------------------- 147 (197)
Q Consensus 90 g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~~~~---------------------- 147 (197)
|++.+++.+.+.+..- .-+..+||+||+|+||+++|.++++.+-+.
T Consensus 1 gq~~~~~~L~~~~~~~------------~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~ 68 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSG------------RLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHP 68 (162)
T ss_dssp S-HHHHHHHHHHHHCT------------C--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CT
T ss_pred CcHHHHHHHHHHHHcC------------CcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCc
Confidence 6788888888887642 456679999999999999999999887221
Q ss_pred -EEEEechhhhhhccCccHHHHHHHHHHHhc----CCCeEEEEcccCccCcc
Q psy6208 148 -FFLINGPEIMSKLAGESESNLRKAFEEADK----NSPSIIFIDELDAIAPK 194 (197)
Q Consensus 148 -~~~v~~~~~~~~~~~~~~~~~~~~~~~a~~----~~~~vl~lDeid~l~~~ 194 (197)
+..++...... .-....++.+.+.+.. +...|++|||+|.|...
T Consensus 69 d~~~~~~~~~~~---~i~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l~~~ 117 (162)
T PF13177_consen 69 DFIIIKPDKKKK---SIKIDQIREIIEFLSLSPSEGKYKVIIIDEADKLTEE 117 (162)
T ss_dssp TEEEEETTTSSS---SBSHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS-HH
T ss_pred ceEEEecccccc---hhhHHHHHHHHHHHHHHHhcCCceEEEeehHhhhhHH
Confidence 11221111000 1123455655554432 34679999999998653
No 232
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=98.30 E-value=2.2e-06 Score=68.92 Aligned_cols=76 Identities=24% Similarity=0.485 Sum_probs=52.0
Q ss_pred CCCCCceEEECCCCCcHHHHHHHHHH------HhCCeEEEEechhhhhh-----ccCccHH-------HHHHHHHHHhcC
Q psy6208 117 VKPPRGILLYGPPGTGKTLIARAVAN------ETGAFFFLINGPEIMSK-----LAGESES-------NLRKAFEEADKN 178 (197)
Q Consensus 117 ~~~~~~ill~G~~GtGKT~la~ala~------~~~~~~~~v~~~~~~~~-----~~~~~~~-------~~~~~~~~a~~~ 178 (197)
+....++||.||+|.||+.||+.+.. ++..+|+.+||..+.+. ++|+... .-..++..+
T Consensus 205 ~rsr~p~ll~gptgagksflarriyelk~arhq~sg~fvevncatlrgd~amsalfghvkgaftga~~~r~gllrsa--- 281 (531)
T COG4650 205 IRSRAPILLNGPTGAGKSFLARRIYELKQARHQFSGAFVEVNCATLRGDTAMSALFGHVKGAFTGARESREGLLRSA--- 281 (531)
T ss_pred hhccCCeEeecCCCcchhHHHHHHHHHHHHHHhcCCceEEEeeeeecCchHHHHHHhhhccccccchhhhhhhhccC---
Confidence 46677899999999999999998853 34678999999877533 2222111 112222222
Q ss_pred CCeEEEEcccCccCccc
Q psy6208 179 SPSIIFIDELDAIAPKR 195 (197)
Q Consensus 179 ~~~vl~lDeid~l~~~r 195 (197)
...+||+|||..|....
T Consensus 282 dggmlfldeigelgade 298 (531)
T COG4650 282 DGGMLFLDEIGELGADE 298 (531)
T ss_pred CCceEehHhhhhcCccH
Confidence 34589999999987654
No 233
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=98.27 E-value=2.9e-06 Score=75.43 Aligned_cols=84 Identities=27% Similarity=0.375 Sum_probs=59.9
Q ss_pred CCCcccccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHhCCe----EEEEechh--
Q psy6208 82 AVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAF----FFLINGPE-- 155 (197)
Q Consensus 82 ~~~~~~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~~~~----~~~v~~~~-- 155 (197)
..-++++.|++..++.+...+.. ..+++|+||||||||++++++++.++.. ++++..+.
T Consensus 14 ~~~~~~viG~~~a~~~l~~a~~~---------------~~~~ll~G~pG~GKT~la~~la~~l~~~~~~~~~~~~n~~~~ 78 (608)
T TIGR00764 14 ERLIDQVIGQEEAVEIIKKAAKQ---------------KRNVLLIGEPGVGKSMLAKAMAELLPDEELEDILVYPNPEDP 78 (608)
T ss_pred hhhHhhccCHHHHHHHHHHHHHc---------------CCCEEEECCCCCCHHHHHHHHHHHcCchhheeEEEEeCCCCC
Confidence 45678999999999988887753 3489999999999999999999998543 33333222
Q ss_pred ----hhhhccCccHHHHHHHHHHHhcCCC
Q psy6208 156 ----IMSKLAGESESNLRKAFEEADKNSP 180 (197)
Q Consensus 156 ----~~~~~~~~~~~~~~~~~~~a~~~~~ 180 (197)
+..-..+..++.++..|..+++..+
T Consensus 79 ~~~~~~~v~~~~g~~~~~~~~~~~~~~~~ 107 (608)
T TIGR00764 79 NMPRIVEVPAGEGREIVEDYKKKAFKQPS 107 (608)
T ss_pred chHHHHHHHHhhchHHHHHHHHHhhcccc
Confidence 1222345566677777777766544
No 234
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=98.26 E-value=8.5e-07 Score=62.86 Aligned_cols=70 Identities=34% Similarity=0.520 Sum_probs=38.2
Q ss_pred ceEEECCCCCcHHHHHHHHHHHhCCeEEEEech-hhh-hhccCc----cHHHHHHHHHHHhcC--CCeEEEEcccCccCc
Q psy6208 122 GILLYGPPGTGKTLIARAVANETGAFFFLINGP-EIM-SKLAGE----SESNLRKAFEEADKN--SPSIIFIDELDAIAP 193 (197)
Q Consensus 122 ~ill~G~~GtGKT~la~ala~~~~~~~~~v~~~-~~~-~~~~~~----~~~~~~~~~~~a~~~--~~~vl~lDeid~l~~ 193 (197)
++||+|+||+|||++++++|..++..|..|.+. ++. ++..|. .+. ..|+- ..+ -..|+++|||.+.++
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~v~~~~~---~~f~~-~~GPif~~ill~DEiNrapp 76 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFPVYDQET---GEFEF-RPGPIFTNILLADEINRAPP 76 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEEEEETTT---TEEEE-EE-TT-SSEEEEETGGGS-H
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeeeeeccCC---CeeEe-ecChhhhceeeecccccCCH
Confidence 489999999999999999999999999988763 232 221111 000 00000 000 025999999999887
Q ss_pred cc
Q psy6208 194 KR 195 (197)
Q Consensus 194 ~r 195 (197)
+-
T Consensus 77 kt 78 (131)
T PF07726_consen 77 KT 78 (131)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 235
>PRK11823 DNA repair protein RadA; Provisional
Probab=98.25 E-value=2.5e-06 Score=73.19 Aligned_cols=78 Identities=27% Similarity=0.525 Sum_probs=54.4
Q ss_pred CCCCCCceEEECCCCCcHHHHHHHHHHHh---CCeEEEEechhhhhhcc------Cc--------cHHHHHHHHHHHhcC
Q psy6208 116 GVKPPRGILLYGPPGTGKTLIARAVANET---GAFFFLINGPEIMSKLA------GE--------SESNLRKAFEEADKN 178 (197)
Q Consensus 116 ~~~~~~~ill~G~~GtGKT~la~ala~~~---~~~~~~v~~~~~~~~~~------~~--------~~~~~~~~~~~a~~~ 178 (197)
|+.+...++|+|+||+|||+|+..++... +.+++|++..+-..... +. .+..+..+++.....
T Consensus 76 Gi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees~~qi~~ra~rlg~~~~~l~~~~e~~l~~i~~~i~~~ 155 (446)
T PRK11823 76 GLVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEESASQIKLRAERLGLPSDNLYLLAETNLEAILATIEEE 155 (446)
T ss_pred CccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccccHHHHHHHHHHcCCChhcEEEeCCCCHHHHHHHHHhh
Confidence 35566678999999999999999998765 67888888755332211 10 112234555555566
Q ss_pred CCeEEEEcccCccCc
Q psy6208 179 SPSIIFIDELDAIAP 193 (197)
Q Consensus 179 ~~~vl~lDeid~l~~ 193 (197)
.|.+|+||++..+..
T Consensus 156 ~~~lVVIDSIq~l~~ 170 (446)
T PRK11823 156 KPDLVVIDSIQTMYS 170 (446)
T ss_pred CCCEEEEechhhhcc
Confidence 789999999998764
No 236
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=98.25 E-value=2.7e-06 Score=64.15 Aligned_cols=31 Identities=35% Similarity=0.371 Sum_probs=25.8
Q ss_pred eEEECCCCCcHHHHHHHHHHHh---CCeEEEEec
Q psy6208 123 ILLYGPPGTGKTLIARAVANET---GAFFFLING 153 (197)
Q Consensus 123 ill~G~~GtGKT~la~ala~~~---~~~~~~v~~ 153 (197)
++++||||+|||+++..++... +.++++++.
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~ 35 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTL 35 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEEC
Confidence 6899999999999999886654 667877765
No 237
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=98.25 E-value=4.3e-06 Score=68.54 Aligned_cols=78 Identities=27% Similarity=0.391 Sum_probs=52.1
Q ss_pred CCCCCceEEECCCCCcHHHHHHHHHHHh---CCeEEEEechhhhhhc----------------cCccHHHHHHHHHHHhc
Q psy6208 117 VKPPRGILLYGPPGTGKTLIARAVANET---GAFFFLINGPEIMSKL----------------AGESESNLRKAFEEADK 177 (197)
Q Consensus 117 ~~~~~~ill~G~~GtGKT~la~ala~~~---~~~~~~v~~~~~~~~~----------------~~~~~~~~~~~~~~a~~ 177 (197)
+.....++|+||||+|||+|+..++... +.+++++++.+-.... ....+..+..+....+.
T Consensus 52 lp~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~~~~~li~~ 131 (321)
T TIGR02012 52 LPRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYARKLGVDIDNLLVSQPDTGEQALEIAETLVRS 131 (321)
T ss_pred CcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchhHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhhc
Confidence 5566678999999999999988776544 6778888875432210 11122233333333445
Q ss_pred CCCeEEEEcccCccCcc
Q psy6208 178 NSPSIIFIDELDAIAPK 194 (197)
Q Consensus 178 ~~~~vl~lDeid~l~~~ 194 (197)
..+++|+||-+..|.+.
T Consensus 132 ~~~~lIVIDSv~al~~~ 148 (321)
T TIGR02012 132 GAVDIIVVDSVAALVPK 148 (321)
T ss_pred cCCcEEEEcchhhhccc
Confidence 67899999999988764
No 238
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=98.24 E-value=2.1e-06 Score=71.95 Aligned_cols=77 Identities=26% Similarity=0.482 Sum_probs=52.9
Q ss_pred CCCCCceEEECCCCCcHHHHHHHHHHHh---CCeEEEEechhhhhhc------cC--------ccHHHHHHHHHHHhcCC
Q psy6208 117 VKPPRGILLYGPPGTGKTLIARAVANET---GAFFFLINGPEIMSKL------AG--------ESESNLRKAFEEADKNS 179 (197)
Q Consensus 117 ~~~~~~ill~G~~GtGKT~la~ala~~~---~~~~~~v~~~~~~~~~------~~--------~~~~~~~~~~~~a~~~~ 179 (197)
+.+..-++|+|+||+|||+++..++... +.++++++..+-.... .+ ..+..+..+++......
T Consensus 79 i~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~~qi~~Ra~rlg~~~~~l~l~~e~~le~I~~~i~~~~ 158 (372)
T cd01121 79 LVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQIKLRADRLGISTENLYLLAETNLEDILASIEELK 158 (372)
T ss_pred ccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCHHHHHHHHHHcCCCcccEEEEccCcHHHHHHHHHhcC
Confidence 5566678999999999999999998765 4578888765422211 01 01123445555555667
Q ss_pred CeEEEEcccCccCc
Q psy6208 180 PSIIFIDELDAIAP 193 (197)
Q Consensus 180 ~~vl~lDeid~l~~ 193 (197)
|++|+||++..+..
T Consensus 159 ~~lVVIDSIq~l~~ 172 (372)
T cd01121 159 PDLVIIDSIQTVYS 172 (372)
T ss_pred CcEEEEcchHHhhc
Confidence 99999999988753
No 239
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=98.24 E-value=2.3e-06 Score=73.63 Aligned_cols=95 Identities=22% Similarity=0.395 Sum_probs=62.3
Q ss_pred cccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHh---CCeEEEEechhhhhhc---
Q psy6208 87 DIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANET---GAFFFLINGPEIMSKL--- 160 (197)
Q Consensus 87 ~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~---~~~~~~v~~~~~~~~~--- 160 (197)
.+.|.+..+.++.+.+... ......+++.|++||||+++|++++... +.+++.++|..+...+
T Consensus 135 ~lig~s~~~~~v~~~i~~~-----------a~~~~~vli~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~c~~~~~~~~~~ 203 (463)
T TIGR01818 135 ELIGEAPAMQEVFRAIGRL-----------SRSDITVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIPKDLIES 203 (463)
T ss_pred ceeecCHHHHHHHHHHHHH-----------hCcCCeEEEECCCCCCHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHH
Confidence 4667776666666655432 2345679999999999999999999876 5689999997763321
Q ss_pred --cCccHHHH-------HHHHHHHhcCCCeEEEEcccCccCccc
Q psy6208 161 --AGESESNL-------RKAFEEADKNSPSIIFIDELDAIAPKR 195 (197)
Q Consensus 161 --~~~~~~~~-------~~~~~~a~~~~~~vl~lDeid~l~~~r 195 (197)
+|...... .+.++ .....+||||||+.|+...
T Consensus 204 ~lfg~~~~~~~~~~~~~~g~~~---~a~~gtl~l~ei~~l~~~~ 244 (463)
T TIGR01818 204 ELFGHEKGAFTGANTRRQGRFE---QADGGTLFLDEIGDMPLDA 244 (463)
T ss_pred HhcCCCCCCCCCcccCCCCcEE---ECCCCeEEEEchhhCCHHH
Confidence 12110000 01122 2234689999999998753
No 240
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=98.24 E-value=5.3e-06 Score=71.92 Aligned_cols=95 Identities=19% Similarity=0.353 Sum_probs=61.4
Q ss_pred CCCcccccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHhC---CeEEEEech-hhh
Q psy6208 82 AVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANETG---AFFFLINGP-EIM 157 (197)
Q Consensus 82 ~~~~~~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~~---~~~~~v~~~-~~~ 157 (197)
..++++++-..+..+.+.+.+.. +..-++++||+|+|||+++.++.+.++ ..++.+.-+ ++.
T Consensus 218 ~~~l~~Lg~~~~~~~~l~~~~~~--------------~~GlilitGptGSGKTTtL~a~L~~l~~~~~~iiTiEDpvE~~ 283 (486)
T TIGR02533 218 RLDLETLGMSPELLSRFERLIRR--------------PHGIILVTGPTGSGKTTTLYAALSRLNTPERNILTVEDPVEYQ 283 (486)
T ss_pred CCCHHHcCCCHHHHHHHHHHHhc--------------CCCEEEEEcCCCCCHHHHHHHHHhccCCCCCcEEEEcCCeeee
Confidence 45677887777777777776642 233478999999999999998877663 344444321 111
Q ss_pred h----h--ccCccHHHHHHHHHHHhcCCCeEEEEcccCc
Q psy6208 158 S----K--LAGESESNLRKAFEEADKNSPSIIFIDELDA 190 (197)
Q Consensus 158 ~----~--~~~~~~~~~~~~~~~a~~~~~~vl~lDeid~ 190 (197)
- . .............+.+.+..|++|++.|+..
T Consensus 284 ~~~~~q~~v~~~~g~~f~~~lr~~LR~dPDvI~vGEiRd 322 (486)
T TIGR02533 284 IEGIGQIQVNPKIGLTFAAGLRAILRQDPDIIMVGEIRD 322 (486)
T ss_pred cCCCceEEEccccCccHHHHHHHHHhcCCCEEEEeCCCC
Confidence 0 0 0011112345566777788999999999854
No 241
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=98.23 E-value=3.5e-06 Score=69.64 Aligned_cols=73 Identities=23% Similarity=0.352 Sum_probs=49.9
Q ss_pred CCCCceEEECCCCCcHHHHHHHHHHHhC--CeEEEEe-chhhhh-h-------c-----cCccHHHHHHHHHHHhcCCCe
Q psy6208 118 KPPRGILLYGPPGTGKTLIARAVANETG--AFFFLIN-GPEIMS-K-------L-----AGESESNLRKAFEEADKNSPS 181 (197)
Q Consensus 118 ~~~~~ill~G~~GtGKT~la~ala~~~~--~~~~~v~-~~~~~~-~-------~-----~~~~~~~~~~~~~~a~~~~~~ 181 (197)
....++++.|++|+|||++++++..... .+++.+. ..++.- . . .+...-....+++.+.+..|+
T Consensus 158 ~~~~nili~G~tgSGKTTll~aL~~~ip~~~ri~tiEd~~El~l~~~~n~~~~~~~~~~~~~~~~~~~~ll~~~LR~~PD 237 (332)
T PRK13900 158 ISKKNIIISGGTSTGKTTFTNAALREIPAIERLITVEDAREIVLSNHPNRVHLLASKGGQGRAKVTTQDLIEACLRLRPD 237 (332)
T ss_pred HcCCcEEEECCCCCCHHHHHHHHHhhCCCCCeEEEecCCCccccccCCCEEEEEecCCCCCcCcCcHHHHHHHHhccCCC
Confidence 4567899999999999999999998874 3444432 122211 0 0 011122456778888889999
Q ss_pred EEEEcccCc
Q psy6208 182 IIFIDELDA 190 (197)
Q Consensus 182 vl~lDeid~ 190 (197)
.|+++|+..
T Consensus 238 ~IivGEiR~ 246 (332)
T PRK13900 238 RIIVGELRG 246 (332)
T ss_pred eEEEEecCC
Confidence 999999863
No 242
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.22 E-value=1.2e-06 Score=65.73 Aligned_cols=59 Identities=24% Similarity=0.519 Sum_probs=36.6
Q ss_pred ccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHhCC---eEEEEechhh
Q psy6208 88 IGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGA---FFFLINGPEI 156 (197)
Q Consensus 88 i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~~~---~~~~v~~~~~ 156 (197)
++|.+++++++...+. ... ...++.++|+|++|+|||++++++...+.. .++.+++...
T Consensus 2 fvgR~~e~~~l~~~l~-~~~---------~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~~~~~~~~~~~~~ 63 (185)
T PF13191_consen 2 FVGREEEIERLRDLLD-AAQ---------SGSPRNLLLTGESGSGKTSLLRALLDRLAERGGYVISINCDDS 63 (185)
T ss_dssp -TT-HHHHHHHHHTTG-GTS---------S-----EEE-B-TTSSHHHHHHHHHHHHHHHT--EEEEEEETT
T ss_pred CCCHHHHHHHHHHHHH-HHH---------cCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEEEecc
Confidence 5788888998888875 211 245678999999999999999998776622 2666665444
No 243
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.22 E-value=5.8e-06 Score=67.44 Aligned_cols=71 Identities=28% Similarity=0.378 Sum_probs=52.4
Q ss_pred cccCcHHHHHHHHHHHHhcccChhhHhhhC-CCCCCceEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhh
Q psy6208 87 DIGGCRKQLAQIKEMVELPLRHPSLFKAIG-VKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIM 157 (197)
Q Consensus 87 ~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~-~~~~~~ill~G~~GtGKT~la~ala~~~~~~~~~v~~~~~~ 157 (197)
-|+|++++++.+.-++..-.++..+-..+. --.|.+||+.||+|+|||.+|+.+|+..+.||+.+.+..+.
T Consensus 16 yIIGQ~~AKkaVAIALRNR~RR~qL~~~lr~EV~PKNILMIGpTGVGKTEIARRLAkl~~aPFiKVEATKfT 87 (444)
T COG1220 16 YIIGQDEAKKAVAIALRNRWRRMQLEEELRDEVTPKNILMIGPTGVGKTEIARRLAKLAGAPFIKVEATKFT 87 (444)
T ss_pred HhcCcHHHHHHHHHHHHHHHHHHhcCHHHhhccCccceEEECCCCCcHHHHHHHHHHHhCCCeEEEEeeeee
Confidence 389999999887665543222211111111 23578999999999999999999999999999999887664
No 244
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=98.21 E-value=1.7e-06 Score=71.10 Aligned_cols=71 Identities=23% Similarity=0.371 Sum_probs=48.0
Q ss_pred CCCceEEECCCCCcHHHHHHHHHHHh-----CCeEEEEe-chhhhhh------ccCccHHHHHHHHHHHhcCCCeEEEEc
Q psy6208 119 PPRGILLYGPPGTGKTLIARAVANET-----GAFFFLIN-GPEIMSK------LAGESESNLRKAFEEADKNSPSIIFID 186 (197)
Q Consensus 119 ~~~~ill~G~~GtGKT~la~ala~~~-----~~~~~~v~-~~~~~~~------~~~~~~~~~~~~~~~a~~~~~~vl~lD 186 (197)
...++++.|++|+|||++++++.... +..++.+. ..++.-. +.....-....+++.+.+..|+.|++.
T Consensus 143 ~~~nilI~G~tGSGKTTll~aL~~~i~~~~~~~rivtiEd~~El~~~~~n~v~l~~~~~~~~~~lv~~aLR~~PD~IivG 222 (323)
T PRK13833 143 SRLNIVISGGTGSGKTTLANAVIAEIVASAPEDRLVILEDTAEIQCAAENAVALHTSDTVDMARLLKSTMRLRPDRIIVG 222 (323)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHHHhcCCCCceEEEecCCcccccCCCCEEEeccCCCcCHHHHHHHHhCCCCCEEEEe
Confidence 45689999999999999999998875 23444433 2232210 111112245677788888999999999
Q ss_pred ccC
Q psy6208 187 ELD 189 (197)
Q Consensus 187 eid 189 (197)
|+-
T Consensus 223 EiR 225 (323)
T PRK13833 223 EVR 225 (323)
T ss_pred ecC
Confidence 984
No 245
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=98.21 E-value=6.9e-06 Score=67.43 Aligned_cols=78 Identities=27% Similarity=0.393 Sum_probs=51.5
Q ss_pred CCCCCceEEECCCCCcHHHHHHHHHHHh---CCeEEEEechhhhhh-------------c---cCccHHHHHHHHHHHhc
Q psy6208 117 VKPPRGILLYGPPGTGKTLIARAVANET---GAFFFLINGPEIMSK-------------L---AGESESNLRKAFEEADK 177 (197)
Q Consensus 117 ~~~~~~ill~G~~GtGKT~la~ala~~~---~~~~~~v~~~~~~~~-------------~---~~~~~~~~~~~~~~a~~ 177 (197)
++...-+.|+||||+|||+|+..++... +..++++++.+-... + ....+..+..+....+.
T Consensus 52 lp~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~i~~~li~s 131 (325)
T cd00983 52 YPKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHALDPVYAKKLGVDLDNLLISQPDTGEQALEIADSLVRS 131 (325)
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccccHHHHHHHHcCCCHHHheecCCCCHHHHHHHHHHHHhc
Confidence 4556668999999999999999887543 778888887442211 0 11122222222223345
Q ss_pred CCCeEEEEcccCccCcc
Q psy6208 178 NSPSIIFIDELDAIAPK 194 (197)
Q Consensus 178 ~~~~vl~lDeid~l~~~ 194 (197)
..+++|+||-+..+.+.
T Consensus 132 ~~~~lIVIDSvaal~~~ 148 (325)
T cd00983 132 GAVDLIVVDSVAALVPK 148 (325)
T ss_pred cCCCEEEEcchHhhccc
Confidence 67899999999988763
No 246
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.20 E-value=1.3e-05 Score=64.78 Aligned_cols=100 Identities=15% Similarity=0.196 Sum_probs=58.7
Q ss_pred cccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHh---------CCeEEEEechhhh
Q psy6208 87 DIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANET---------GAFFFLINGPEIM 157 (197)
Q Consensus 87 ~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~---------~~~~~~v~~~~~~ 157 (197)
.-+|...+.+.+...-.. +..|. .....+++|+|++|.|||++++.++..- ..|++++.++.-.
T Consensus 35 rWIgY~~A~~~L~~L~~L-l~~P~------~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p 107 (302)
T PF05621_consen 35 RWIGYPRAKEALDRLEEL-LEYPK------RHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEP 107 (302)
T ss_pred CeecCHHHHHHHHHHHHH-HhCCc------ccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCC
Confidence 345665555554443221 22222 2345679999999999999999998653 2477787754321
Q ss_pred h----------h----cc--CccHHHHHHHHHHHhcCCCeEEEEcccCccCc
Q psy6208 158 S----------K----LA--GESESNLRKAFEEADKNSPSIIFIDELDAIAP 193 (197)
Q Consensus 158 ~----------~----~~--~~~~~~~~~~~~~a~~~~~~vl~lDeid~l~~ 193 (197)
+ . +. .........+....+...+.+|+|||+|.+..
T Consensus 108 ~~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLa 159 (302)
T PF05621_consen 108 DERRFYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLA 159 (302)
T ss_pred ChHHHHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhc
Confidence 1 1 10 11112222333444556688999999999643
No 247
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=98.20 E-value=1.9e-06 Score=70.86 Aligned_cols=72 Identities=26% Similarity=0.436 Sum_probs=48.5
Q ss_pred CCCCceEEECCCCCcHHHHHHHHHHHh-----CCeEEEEe-chhhhh------hccCccHHHHHHHHHHHhcCCCeEEEE
Q psy6208 118 KPPRGILLYGPPGTGKTLIARAVANET-----GAFFFLIN-GPEIMS------KLAGESESNLRKAFEEADKNSPSIIFI 185 (197)
Q Consensus 118 ~~~~~ill~G~~GtGKT~la~ala~~~-----~~~~~~v~-~~~~~~------~~~~~~~~~~~~~~~~a~~~~~~vl~l 185 (197)
....++++.|++|+|||+++++++... ...++.+. ..++.- .+.....-....+++.+.+..|+.|++
T Consensus 146 ~~~~~ilI~G~tGSGKTTll~aL~~~~~~~~~~~rivtIEd~~El~~~~~~~v~~~~~~~~~~~~ll~~aLR~~PD~Iiv 225 (319)
T PRK13894 146 RAHRNILVIGGTGSGKTTLVNAIINEMVIQDPTERVFIIEDTGEIQCAAENYVQYHTSIDVNMTALLKTTLRMRPDRILV 225 (319)
T ss_pred HcCCeEEEECCCCCCHHHHHHHHHHhhhhcCCCceEEEEcCCCccccCCCCEEEEecCCCCCHHHHHHHHhcCCCCEEEE
Confidence 346789999999999999999998763 23344332 122210 011111234667888888999999999
Q ss_pred cccC
Q psy6208 186 DELD 189 (197)
Q Consensus 186 Deid 189 (197)
.|+-
T Consensus 226 GEiR 229 (319)
T PRK13894 226 GEVR 229 (319)
T ss_pred eccC
Confidence 9985
No 248
>PRK04296 thymidine kinase; Provisional
Probab=98.19 E-value=6.9e-06 Score=62.60 Aligned_cols=71 Identities=21% Similarity=0.280 Sum_probs=42.1
Q ss_pred ceEEECCCCCcHHHHHHHHHHHh---CCeEEEEech----h----hhhhccCc-cH----HHHHHHHHHH--hcCCCeEE
Q psy6208 122 GILLYGPPGTGKTLIARAVANET---GAFFFLINGP----E----IMSKLAGE-SE----SNLRKAFEEA--DKNSPSII 183 (197)
Q Consensus 122 ~ill~G~~GtGKT~la~ala~~~---~~~~~~v~~~----~----~~~~~~~~-~~----~~~~~~~~~a--~~~~~~vl 183 (197)
-.+++||+|+|||+++..++... +..++.+... . +.+.+ +. .. .....++..+ ....+++|
T Consensus 4 i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~~~d~~~~~~~i~~~l-g~~~~~~~~~~~~~~~~~~~~~~~~~dvv 82 (190)
T PRK04296 4 LEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKPAIDDRYGEGKVVSRI-GLSREAIPVSSDTDIFELIEEEGEKIDCV 82 (190)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEeccccccccCCcEecCC-CCcccceEeCChHHHHHHHHhhCCCCCEE
Confidence 46899999999999998887765 5566655431 1 11111 10 00 0112222222 33467899
Q ss_pred EEcccCccCc
Q psy6208 184 FIDELDAIAP 193 (197)
Q Consensus 184 ~lDeid~l~~ 193 (197)
+|||++.|..
T Consensus 83 iIDEaq~l~~ 92 (190)
T PRK04296 83 LIDEAQFLDK 92 (190)
T ss_pred EEEccccCCH
Confidence 9999988754
No 249
>PRK10436 hypothetical protein; Provisional
Probab=98.18 E-value=7.1e-06 Score=70.58 Aligned_cols=95 Identities=22% Similarity=0.377 Sum_probs=63.5
Q ss_pred CCCcccccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHhC---CeEEEEech-hhh
Q psy6208 82 AVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANETG---AFFFLINGP-EIM 157 (197)
Q Consensus 82 ~~~~~~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~~---~~~~~v~~~-~~~ 157 (197)
..++++++-.....+.+.+.+.. +...+|++||+|+|||+++.++....+ .+++.+.-+ +..
T Consensus 194 ~~~L~~LG~~~~~~~~l~~~~~~--------------~~GliLvtGpTGSGKTTtL~a~l~~~~~~~~~i~TiEDPvE~~ 259 (462)
T PRK10436 194 ALDLETLGMTPAQLAQFRQALQQ--------------PQGLILVTGPTGSGKTVTLYSALQTLNTAQINICSVEDPVEIP 259 (462)
T ss_pred CCCHHHcCcCHHHHHHHHHHHHh--------------cCCeEEEECCCCCChHHHHHHHHHhhCCCCCEEEEecCCcccc
Confidence 35778888778888888877643 355689999999999999988777663 344444321 211
Q ss_pred hhc-----cC-ccHHHHHHHHHHHhcCCCeEEEEcccCc
Q psy6208 158 SKL-----AG-ESESNLRKAFEEADKNSPSIIFIDELDA 190 (197)
Q Consensus 158 ~~~-----~~-~~~~~~~~~~~~a~~~~~~vl~lDeid~ 190 (197)
-.. ++ .........++.+.+..|++|++.|+-.
T Consensus 260 l~gi~Q~~v~~~~g~~f~~~lr~~LR~dPDvI~vGEIRD 298 (462)
T PRK10436 260 LAGINQTQIHPKAGLTFQRVLRALLRQDPDVIMVGEIRD 298 (462)
T ss_pred CCCcceEeeCCccCcCHHHHHHHHhcCCCCEEEECCCCC
Confidence 110 11 1122456677778888999999999853
No 250
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=98.18 E-value=5.4e-06 Score=69.43 Aligned_cols=71 Identities=20% Similarity=0.299 Sum_probs=47.4
Q ss_pred CCceEEECCCCCcHHHHHHHHHHHh-----CCeEEEEech-hhhh-----------hccCccHHHHHHHHHHHhcCCCeE
Q psy6208 120 PRGILLYGPPGTGKTLIARAVANET-----GAFFFLINGP-EIMS-----------KLAGESESNLRKAFEEADKNSPSI 182 (197)
Q Consensus 120 ~~~ill~G~~GtGKT~la~ala~~~-----~~~~~~v~~~-~~~~-----------~~~~~~~~~~~~~~~~a~~~~~~v 182 (197)
...++++||+|+|||++++++.... +.+++.+.-+ ++.- ..++.........++.+.+..|++
T Consensus 149 ~GlilI~G~TGSGKTT~l~al~~~i~~~~~~~~IvtiEdp~E~~~~~~~~~~~~~q~evg~~~~~~~~~l~~aLR~~PD~ 228 (372)
T TIGR02525 149 AGLGLICGETGSGKSTLAASIYQHCGETYPDRKIVTYEDPIEYILGSPDDLLPPAQSQIGRDVDSFANGIRLALRRAPKI 228 (372)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEecCchhccCCCceeecccccccCCCccCHHHHHHHhhccCCCE
Confidence 3468999999999999999998766 2345555322 2210 011222224556677788889999
Q ss_pred EEEcccCc
Q psy6208 183 IFIDELDA 190 (197)
Q Consensus 183 l~lDeid~ 190 (197)
|+++|+..
T Consensus 229 I~vGEiRd 236 (372)
T TIGR02525 229 IGVGEIRD 236 (372)
T ss_pred EeeCCCCC
Confidence 99999853
No 251
>KOG2170|consensus
Probab=98.17 E-value=6.4e-06 Score=66.13 Aligned_cols=97 Identities=19% Similarity=0.290 Sum_probs=59.5
Q ss_pred ccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHh---CC--eEE--EEechhh----
Q psy6208 88 IGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANET---GA--FFF--LINGPEI---- 156 (197)
Q Consensus 88 i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~---~~--~~~--~v~~~~~---- 156 (197)
+.|+.-+++.+-..+......+.. ..|-.+-++|++||||++.++.||+.+ |. +++ ++....+
T Consensus 84 lfGQHla~~~Vv~alk~~~~n~~p------~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V~~fvat~hFP~~~ 157 (344)
T KOG2170|consen 84 LFGQHLAKQLVVNALKSHWANPNP------RKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPFVHHFVATLHFPHAS 157 (344)
T ss_pred hhchHHHHHHHHHHHHHHhcCCCC------CCCeEEEecCCCCCchhHHHHHHHHHHHhccccchhHHHhhhhccCCChH
Confidence 678877777777777765544331 233446799999999999999999876 21 211 1111111
Q ss_pred -hhhccCccHHHHHHHHHHHhcCCCeEEEEcccCccCc
Q psy6208 157 -MSKLAGESESNLRKAFEEADKNSPSIIFIDELDAIAP 193 (197)
Q Consensus 157 -~~~~~~~~~~~~~~~~~~a~~~~~~vl~lDeid~l~~ 193 (197)
...|. ++....+.......+.++.++||+|.|.+
T Consensus 158 ~ie~Yk---~eL~~~v~~~v~~C~rslFIFDE~DKmp~ 192 (344)
T KOG2170|consen 158 KIEDYK---EELKNRVRGTVQACQRSLFIFDEVDKLPP 192 (344)
T ss_pred HHHHHH---HHHHHHHHHHHHhcCCceEEechhhhcCH
Confidence 11111 11122333445566778999999999976
No 252
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=98.17 E-value=3.5e-06 Score=63.99 Aligned_cols=72 Identities=24% Similarity=0.356 Sum_probs=46.5
Q ss_pred CCCCceEEECCCCCcHHHHHHHHHHHhC--CeEEEEech-hhhhh------c-------cCccHHHHHHHHHHHhcCCCe
Q psy6208 118 KPPRGILLYGPPGTGKTLIARAVANETG--AFFFLINGP-EIMSK------L-------AGESESNLRKAFEEADKNSPS 181 (197)
Q Consensus 118 ~~~~~ill~G~~GtGKT~la~ala~~~~--~~~~~v~~~-~~~~~------~-------~~~~~~~~~~~~~~a~~~~~~ 181 (197)
.....++|.||+|+|||+++++++.... ...+.+... ++... + .+........+++.+.+..|+
T Consensus 23 ~~g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lR~~pd 102 (186)
T cd01130 23 EARKNILISGGTGSGKTTLLNALLAFIPPDERIITIEDTAELQLPHPNWVRLVTRPGNVEGSGEVTMADLLRSALRMRPD 102 (186)
T ss_pred hCCCEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCccccCCCCCCEEEEEEecCCCCCCCccCHHHHHHHHhccCCC
Confidence 4567899999999999999999988762 223333211 11100 0 001123455667777777899
Q ss_pred EEEEcccC
Q psy6208 182 IIFIDELD 189 (197)
Q Consensus 182 vl~lDeid 189 (197)
+++++|+-
T Consensus 103 ~i~igEir 110 (186)
T cd01130 103 RIIVGEVR 110 (186)
T ss_pred EEEEEccC
Confidence 99999985
No 253
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=98.17 E-value=7.4e-07 Score=61.61 Aligned_cols=23 Identities=43% Similarity=0.892 Sum_probs=20.6
Q ss_pred eEEECCCCCcHHHHHHHHHHHhC
Q psy6208 123 ILLYGPPGTGKTLIARAVANETG 145 (197)
Q Consensus 123 ill~G~~GtGKT~la~ala~~~~ 145 (197)
|+|+|+||+|||++++.|+..+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~ 23 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLL 23 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHH
Confidence 68999999999999999987763
No 254
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=98.16 E-value=7.9e-06 Score=64.19 Aligned_cols=38 Identities=21% Similarity=0.294 Sum_probs=28.6
Q ss_pred CCCCCceEEECCCCCcHHHHHHHHHHHh---CCeEEEEech
Q psy6208 117 VKPPRGILLYGPPGTGKTLIARAVANET---GAFFFLINGP 154 (197)
Q Consensus 117 ~~~~~~ill~G~~GtGKT~la~ala~~~---~~~~~~v~~~ 154 (197)
+.....+++.|++|+|||+++..++... +..+++++..
T Consensus 21 i~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e 61 (230)
T PRK08533 21 IPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQ 61 (230)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCC
Confidence 4566679999999999999986665433 5677777643
No 255
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=98.16 E-value=9.7e-06 Score=63.01 Aligned_cols=73 Identities=26% Similarity=0.344 Sum_probs=48.0
Q ss_pred CCCceEEECCCCCcHHHHHHHHHHHh--------CCeEEEEec-hhhhhhccCccH-------------HHHHHHHHHHh
Q psy6208 119 PPRGILLYGPPGTGKTLIARAVANET--------GAFFFLING-PEIMSKLAGESE-------------SNLRKAFEEAD 176 (197)
Q Consensus 119 ~~~~ill~G~~GtGKT~la~ala~~~--------~~~~~~v~~-~~~~~~~~~~~~-------------~~~~~~~~~a~ 176 (197)
...+.|+.||||+|||++.+-+|.-+ +..+..++- +++.....+... ..-..+....+
T Consensus 136 g~lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIag~~~gvpq~~~g~R~dVld~cpk~~gmmmaIr 215 (308)
T COG3854 136 GWLNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIAGCLNGVPQHGRGRRMDVLDPCPKAEGMMMAIR 215 (308)
T ss_pred CceeeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccchhhccccCCchhhhhhhhhhcccchHHHHHHHHHH
Confidence 34568999999999999999998765 234445543 344333322211 12234455667
Q ss_pred cCCCeEEEEcccCcc
Q psy6208 177 KNSPSIIFIDELDAI 191 (197)
Q Consensus 177 ~~~~~vl~lDeid~l 191 (197)
...|.|+++|||...
T Consensus 216 sm~PEViIvDEIGt~ 230 (308)
T COG3854 216 SMSPEVIIVDEIGTE 230 (308)
T ss_pred hcCCcEEEEeccccH
Confidence 788999999999754
No 256
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=98.16 E-value=8.8e-06 Score=58.62 Aligned_cols=35 Identities=40% Similarity=0.756 Sum_probs=28.0
Q ss_pred eEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhhh
Q psy6208 123 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSK 159 (197)
Q Consensus 123 ill~G~~GtGKT~la~ala~~~~~~~~~v~~~~~~~~ 159 (197)
+++.|+||+||||+++.++..++ ...++...+...
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~--~~~i~~D~~~~~ 36 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLG--AVVISQDEIRRR 36 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHST--EEEEEHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHCC--CEEEeHHHHHHH
Confidence 68999999999999999999988 444565555443
No 257
>KOG1970|consensus
Probab=98.16 E-value=1.3e-05 Score=69.10 Aligned_cols=71 Identities=20% Similarity=0.313 Sum_probs=52.6
Q ss_pred HHhhcCCCCcccccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHhCCeEEEEe
Q psy6208 76 EEEASNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLIN 152 (197)
Q Consensus 76 ~~~~~~~~~~~~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~~~~~~~v~ 152 (197)
+-+...+-+.+++.-..+-+.+++.++... .. +. .-...+-+||+||+|||||+.++.++.++|..++...
T Consensus 72 W~eKy~P~t~eeLAVHkkKI~eVk~WL~~~-~~---~~--~~l~~~iLLltGPsGcGKSTtvkvLskelg~~~~Ew~ 142 (634)
T KOG1970|consen 72 WVEKYKPRTLEELAVHKKKISEVKQWLKQV-AE---FT--PKLGSRILLLTGPSGCGKSTTVKVLSKELGYQLIEWS 142 (634)
T ss_pred hHHhcCcccHHHHhhhHHhHHHHHHHHHHH-HH---hc--cCCCceEEEEeCCCCCCchhHHHHHHHhhCceeeeec
Confidence 345566778888888888888888888721 10 00 0123445899999999999999999999999888765
No 258
>KOG0990|consensus
Probab=98.15 E-value=4.6e-07 Score=73.08 Aligned_cols=104 Identities=18% Similarity=0.172 Sum_probs=67.2
Q ss_pred hHHhhcCCCCcccccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHhCCeE------
Q psy6208 75 EEEEASNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFF------ 148 (197)
Q Consensus 75 ~~~~~~~~~~~~~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~~~~~------ 148 (197)
.+.+..++-..+++++.++....+.++... ..-.++|+|||||+|||....+.|..+-++.
T Consensus 30 pwvekyrP~~l~dv~~~~ei~st~~~~~~~-------------~~lPh~L~YgPPGtGktsti~a~a~~ly~~~~~~~m~ 96 (360)
T KOG0990|consen 30 PWVEKYRPPFLGIVIKQEPIWSTENRYSGM-------------PGLPHLLFYGPPGTGKTSTILANARDFYSPHPTTSML 96 (360)
T ss_pred CCccCCCCchhhhHhcCCchhhHHHHhccC-------------CCCCcccccCCCCCCCCCchhhhhhhhcCCCCchhHH
Confidence 345556677888999999999999888543 2334899999999999999999999885431
Q ss_pred EEEechhhhhhccCccHHHHHHHHHHHhc-------CCCeEEEEcccCccCcc
Q psy6208 149 FLINGPEIMSKLAGESESNLRKAFEEADK-------NSPSIIFIDELDAIAPK 194 (197)
Q Consensus 149 ~~v~~~~~~~~~~~~~~~~~~~~~~~a~~-------~~~~vl~lDeid~l~~~ 194 (197)
..+++++-.+ ++ .-..-...|...+. ..+.++++||+|.+...
T Consensus 97 lelnaSd~rg--id-~vr~qi~~fast~~~~~fst~~~fKlvILDEADaMT~~ 146 (360)
T KOG0990|consen 97 LELNASDDRG--ID-PVRQQIHLFASTQQPTTYSTHAAFKLVILDEADAMTRD 146 (360)
T ss_pred HHhhccCccC--Cc-chHHHHHHHHhhccceeccccCceeEEEecchhHhhHH
Confidence 1111111110 01 11122233443332 25789999999998654
No 259
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=98.15 E-value=9.1e-06 Score=63.38 Aligned_cols=39 Identities=36% Similarity=0.558 Sum_probs=32.4
Q ss_pred CCCCCCceEEECCCCCcHHHHHHHHHHHh---CCeEEEEech
Q psy6208 116 GVKPPRGILLYGPPGTGKTLIARAVANET---GAFFFLINGP 154 (197)
Q Consensus 116 ~~~~~~~ill~G~~GtGKT~la~ala~~~---~~~~~~v~~~ 154 (197)
|+....-++|+|+||+|||+++..++... +.+++++++.
T Consensus 19 Gi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e 60 (225)
T PRK09361 19 GFERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE 60 (225)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 35556668999999999999999998754 7788999887
No 260
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=98.15 E-value=3e-06 Score=73.89 Aligned_cols=63 Identities=16% Similarity=0.332 Sum_probs=46.9
Q ss_pred CCcccccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHh-CCeEEEEe
Q psy6208 83 VGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANET-GAFFFLIN 152 (197)
Q Consensus 83 ~~~~~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~-~~~~~~v~ 152 (197)
--|+|+.|+++++.++.+++...... ++ ....-++|.||||+|||+|+++|++.+ ..+++.+.
T Consensus 73 ~fF~d~yGlee~ieriv~~l~~Aa~g------l~-~~~~IL~LvGPpG~GKSsLa~~la~~le~~~~Y~~k 136 (644)
T PRK15455 73 PAFEEFYGMEEAIEQIVSYFRHAAQG------LE-EKKQILYLLGPVGGGKSSLAERLKSLMERVPIYVLK 136 (644)
T ss_pred cchhcccCcHHHHHHHHHHHHHHHHh------cC-CCCceEEEecCCCCCchHHHHHHHHHHHhCcceeec
Confidence 35778999999999999888543221 11 234568999999999999999999887 33544443
No 261
>smart00350 MCM minichromosome maintenance proteins.
Probab=98.14 E-value=1.5e-06 Score=75.87 Aligned_cols=72 Identities=24% Similarity=0.341 Sum_probs=41.8
Q ss_pred CCceEEECCCCCcHHHHHHHHHHHhCCeEEEE----echhhhhhccCc---cHHHH-HHHHHHHhcCCCeEEEEcccCcc
Q psy6208 120 PRGILLYGPPGTGKTLIARAVANETGAFFFLI----NGPEIMSKLAGE---SESNL-RKAFEEADKNSPSIIFIDELDAI 191 (197)
Q Consensus 120 ~~~ill~G~~GtGKT~la~ala~~~~~~~~~v----~~~~~~~~~~~~---~~~~~-~~~~~~a~~~~~~vl~lDeid~l 191 (197)
..++||+|+||+|||++|+++++.+....+.. ++..+....... .+..+ .+.+..| ...+++|||++.+
T Consensus 236 ~~~vLL~G~pGtGKs~lar~l~~~~~r~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~G~l~~A---~~Gil~iDEi~~l 312 (509)
T smart00350 236 DINILLLGDPGTAKSQLLKYVEKTAPRAVYTTGKGSSAVGLTAAVTRDPETREFTLEGGALVLA---DNGVCCIDEFDKM 312 (509)
T ss_pred cceEEEeCCCChhHHHHHHHHHHHcCcceEcCCCCCCcCCccccceEccCcceEEecCccEEec---CCCEEEEechhhC
Confidence 34799999999999999999999875432211 222221111000 00000 0111222 3459999999998
Q ss_pred Ccc
Q psy6208 192 APK 194 (197)
Q Consensus 192 ~~~ 194 (197)
.++
T Consensus 313 ~~~ 315 (509)
T smart00350 313 DDS 315 (509)
T ss_pred CHH
Confidence 765
No 262
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=98.14 E-value=2.3e-05 Score=63.02 Aligned_cols=89 Identities=19% Similarity=0.266 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHH--hCC---eEEEEechhh----------
Q psy6208 92 RKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANE--TGA---FFFLINGPEI---------- 156 (197)
Q Consensus 92 ~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~--~~~---~~~~v~~~~~---------- 156 (197)
+..+++|.+.+... ......+.|+|++|+|||+||..+++. ... .+++++...-
T Consensus 2 e~~~~~l~~~L~~~-----------~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i 70 (287)
T PF00931_consen 2 EKEIEKLKDWLLDN-----------SNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQI 70 (287)
T ss_dssp HHHHHHHHHHHHTT-----------TTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHH
T ss_pred HHHHHHHHHHhhCC-----------CCCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccc
Confidence 44566666666542 134556899999999999999999977 322 2344443221
Q ss_pred hhhc--------cCccHHHHHHHHHHHhcCCCeEEEEcccCcc
Q psy6208 157 MSKL--------AGESESNLRKAFEEADKNSPSIIFIDELDAI 191 (197)
Q Consensus 157 ~~~~--------~~~~~~~~~~~~~~a~~~~~~vl~lDeid~l 191 (197)
...+ ...........+.......+++|+||+++..
T Consensus 71 ~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~ 113 (287)
T PF00931_consen 71 LRQLGEPDSSISDPKDIEELQDQLRELLKDKRCLLVLDDVWDE 113 (287)
T ss_dssp HHHHTCC-STSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SH
T ss_pred cccccccccccccccccccccccchhhhccccceeeeeeeccc
Confidence 1111 1112233344444444556999999998753
No 263
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=98.14 E-value=4.8e-06 Score=58.87 Aligned_cols=53 Identities=21% Similarity=0.347 Sum_probs=40.6
Q ss_pred ccccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHh
Q psy6208 86 DDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANET 144 (197)
Q Consensus 86 ~~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~ 144 (197)
+.+.|+.-+.+.+.+++...+..+. -..+--+.|+|+||||||++++.||+.+
T Consensus 25 ~~l~GQhla~~~v~~ai~~~l~~~~------p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 25 RNLFGQHLAVEVVVNAIKGHLANPN------PRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HHccCcHHHHHHHHHHHHHHHcCCC------CCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 3589999999988888887655432 1223335699999999999999999986
No 264
>PRK00131 aroK shikimate kinase; Reviewed
Probab=98.13 E-value=3.3e-06 Score=62.80 Aligned_cols=34 Identities=32% Similarity=0.409 Sum_probs=29.7
Q ss_pred CCCceEEECCCCCcHHHHHHHHHHHhCCeEEEEe
Q psy6208 119 PPRGILLYGPPGTGKTLIARAVANETGAFFFLIN 152 (197)
Q Consensus 119 ~~~~ill~G~~GtGKT~la~ala~~~~~~~~~v~ 152 (197)
++..|+|+|+||||||++++++++.++.+++..+
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~l~~~~~d~d 36 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDTD 36 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 4567999999999999999999999998777543
No 265
>KOG1942|consensus
Probab=98.12 E-value=6.5e-06 Score=66.10 Aligned_cols=83 Identities=31% Similarity=0.418 Sum_probs=54.6
Q ss_pred CcccccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHhC--CeEEEEechhhhhhcc
Q psy6208 84 GYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANETG--AFFFLINGPEIMSKLA 161 (197)
Q Consensus 84 ~~~~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~~--~~~~~v~~~~~~~~~~ 161 (197)
.-..++|+.++.+..--.+... +.. --..+.+||.||||||||.||-++++++| .||..+.+++..+.-+
T Consensus 36 ~~~g~vGQ~~AReAagiivdli-k~K-------kmaGravLlaGppgtGKTAlAlaisqELG~kvPFcpmvgSEvyS~Ev 107 (456)
T KOG1942|consen 36 VAAGFVGQENAREAAGIIVDLI-KSK-------KMAGRAVLLAGPPGTGKTALALAISQELGPKVPFCPMVGSEVYSNEV 107 (456)
T ss_pred cccccccchhhhhhhhHHHHHH-Hhh-------hccCcEEEEecCCCCchhHHHHHHHHHhCCCCCcccccchhhhhhhh
Confidence 3356888888777654333321 110 12466899999999999999999999995 5777777777766544
Q ss_pred CccHHHHHHHHHHH
Q psy6208 162 GESESNLRKAFEEA 175 (197)
Q Consensus 162 ~~~~~~~~~~~~~a 175 (197)
...+ -+.+.|+++
T Consensus 108 KKTE-vLmenfRRa 120 (456)
T KOG1942|consen 108 KKTE-VLMENFRRA 120 (456)
T ss_pred hHHH-HHHHHHHHH
Confidence 3332 334444443
No 266
>PHA02624 large T antigen; Provisional
Probab=98.12 E-value=1.3e-05 Score=70.25 Aligned_cols=40 Identities=33% Similarity=0.404 Sum_probs=34.2
Q ss_pred CCCCCCceEEECCCCCcHHHHHHHHHHHhCCeEEEEechh
Q psy6208 116 GVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPE 155 (197)
Q Consensus 116 ~~~~~~~ill~G~~GtGKT~la~ala~~~~~~~~~v~~~~ 155 (197)
+++..+.++|+||+|||||+++.+|++.++..++.++++.
T Consensus 427 giPKk~~il~~GPpnTGKTtf~~sLl~~L~G~vlsVNsPt 466 (647)
T PHA02624 427 NVPKRRYWLFKGPVNSGKTTLAAALLDLCGGKSLNVNCPP 466 (647)
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHcCCeEEEeeCCc
Confidence 4566678999999999999999999999977777787654
No 267
>KOG2227|consensus
Probab=98.12 E-value=3.2e-05 Score=65.55 Aligned_cols=109 Identities=19% Similarity=0.335 Sum_probs=72.7
Q ss_pred hcCCCCcccccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHh----CC-eEEEEec
Q psy6208 79 ASNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANET----GA-FFFLING 153 (197)
Q Consensus 79 ~~~~~~~~~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~----~~-~~~~v~~ 153 (197)
......-..+.|.+..+..+++++..++. ...++.+++.|.||+|||.+..-+.... .. ..++++|
T Consensus 143 l~~t~~p~~l~gRe~e~~~v~~F~~~hle---------~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc 213 (529)
T KOG2227|consen 143 LLNTAPPGTLKGRELEMDIVREFFSLHLE---------LNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINC 213 (529)
T ss_pred HHhcCCCCCccchHHHHHHHHHHHHhhhh---------cccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEee
Confidence 33445566799999999999999987644 3567789999999999999999775554 22 3488888
Q ss_pred hhhhh----------hc----cCc-cHHHHHHHHHHH-hcC-CCeEEEEcccCccCcccC
Q psy6208 154 PEIMS----------KL----AGE-SESNLRKAFEEA-DKN-SPSIIFIDELDAIAPKRE 196 (197)
Q Consensus 154 ~~~~~----------~~----~~~-~~~~~~~~~~~a-~~~-~~~vl~lDeid~l~~~r~ 196 (197)
..+.. .+ .+. .+......|+.- ... .+-++++||+|.|..+++
T Consensus 214 ~sl~~~~aiF~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~ 273 (529)
T KOG2227|consen 214 TSLTEASAIFKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQ 273 (529)
T ss_pred ccccchHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhccc
Confidence 75421 11 111 112223333332 222 367999999999986554
No 268
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=98.12 E-value=9.1e-06 Score=63.82 Aligned_cols=39 Identities=28% Similarity=0.514 Sum_probs=31.7
Q ss_pred CCCCCCceEEECCCCCcHHHHHHHHHHHh---CCeEEEEech
Q psy6208 116 GVKPPRGILLYGPPGTGKTLIARAVANET---GAFFFLINGP 154 (197)
Q Consensus 116 ~~~~~~~ill~G~~GtGKT~la~ala~~~---~~~~~~v~~~ 154 (197)
|+..+..++++|+||+|||+++.+++... +.++++++..
T Consensus 21 G~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e 62 (234)
T PRK06067 21 GIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTE 62 (234)
T ss_pred CCcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcC
Confidence 45677789999999999999999996543 6788888754
No 269
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=98.10 E-value=5.1e-06 Score=69.35 Aligned_cols=73 Identities=22% Similarity=0.400 Sum_probs=43.3
Q ss_pred CCCCCceEEECCCCCcHHHHHHHHHHHhCC-eEEEEechhhhhhccCc------cHHHHHHHHHHHhcCCCeEEEEcccC
Q psy6208 117 VKPPRGILLYGPPGTGKTLIARAVANETGA-FFFLINGPEIMSKLAGE------SESNLRKAFEEADKNSPSIIFIDELD 189 (197)
Q Consensus 117 ~~~~~~ill~G~~GtGKT~la~ala~~~~~-~~~~v~~~~~~~~~~~~------~~~~~~~~~~~a~~~~~~vl~lDeid 189 (197)
...++|++|||++|+|||+|+..+.+.+.. .-..++-.+++...... ....+..+.+... ....+|++||++
T Consensus 59 ~~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh~Fm~~vh~~l~~~~~~~~~l~~va~~l~-~~~~lLcfDEF~ 137 (362)
T PF03969_consen 59 PPPPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFHEFMLDVHSRLHQLRGQDDPLPQVADELA-KESRLLCFDEFQ 137 (362)
T ss_pred CCCCceEEEECCCCCchhHHHHHHHHhCCccccccccccHHHHHHHHHHHHHhCCCccHHHHHHHHH-hcCCEEEEeeee
Confidence 457899999999999999999999888743 22222222332211100 1112222322222 234699999987
Q ss_pred c
Q psy6208 190 A 190 (197)
Q Consensus 190 ~ 190 (197)
-
T Consensus 138 V 138 (362)
T PF03969_consen 138 V 138 (362)
T ss_pred c
Confidence 4
No 270
>PRK13764 ATPase; Provisional
Probab=98.10 E-value=7.4e-06 Score=72.30 Aligned_cols=71 Identities=21% Similarity=0.365 Sum_probs=43.1
Q ss_pred CCCceEEECCCCCcHHHHHHHHHHHhC---CeEEEEe-chhh-----hhhccCccHHHHHHHHHHHhcCCCeEEEEcccC
Q psy6208 119 PPRGILLYGPPGTGKTLIARAVANETG---AFFFLIN-GPEI-----MSKLAGESESNLRKAFEEADKNSPSIIFIDELD 189 (197)
Q Consensus 119 ~~~~ill~G~~GtGKT~la~ala~~~~---~~~~~v~-~~~~-----~~~~~~~~~~~~~~~~~~a~~~~~~vl~lDeid 189 (197)
...+++++||||+||||++++++..+. ..+..+. ..++ ...+. ............+.+..|+++++||+.
T Consensus 256 ~~~~ILIsG~TGSGKTTll~AL~~~i~~~~riV~TiEDp~El~~~~~i~q~~-~~~~~~~~~~~~lLR~rPD~IivGEiR 334 (602)
T PRK13764 256 RAEGILIAGAPGAGKSTFAQALAEFYADMGKIVKTMESPRDLQVPPEITQYS-KLEGSMEETADILLLVRPDYTIYDEMR 334 (602)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHHHhhCCCEEEEECCCccccCCCcceEEe-eccccHHHHHHHHHhhCCCEEEECCCC
Confidence 356799999999999999999998773 3333432 1122 11111 000111222233346679999999985
Q ss_pred c
Q psy6208 190 A 190 (197)
Q Consensus 190 ~ 190 (197)
.
T Consensus 335 d 335 (602)
T PRK13764 335 K 335 (602)
T ss_pred C
Confidence 3
No 271
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=98.09 E-value=1.5e-05 Score=70.44 Aligned_cols=94 Identities=23% Similarity=0.301 Sum_probs=62.0
Q ss_pred CCcccccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHhC---CeEEEEech-hhhh
Q psy6208 83 VGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANETG---AFFFLINGP-EIMS 158 (197)
Q Consensus 83 ~~~~~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~~---~~~~~v~~~-~~~~ 158 (197)
.++++++-.....+.+.+++.. +...++++||+|+|||+++.++.+.++ .+++.+.-+ +..-
T Consensus 293 ~~l~~lg~~~~~~~~l~~~~~~--------------~~Glilv~G~tGSGKTTtl~a~l~~~~~~~~~i~tiEdpvE~~~ 358 (564)
T TIGR02538 293 LDIDKLGFEPDQKALFLEAIHK--------------PQGMVLVTGPTGSGKTVSLYTALNILNTEEVNISTAEDPVEINL 358 (564)
T ss_pred CCHHHcCCCHHHHHHHHHHHHh--------------cCCeEEEECCCCCCHHHHHHHHHHhhCCCCceEEEecCCceecC
Confidence 4667888777777777776643 345689999999999999988877764 334443221 1110
Q ss_pred ----h-ccC-ccHHHHHHHHHHHhcCCCeEEEEcccCc
Q psy6208 159 ----K-LAG-ESESNLRKAFEEADKNSPSIIFIDELDA 190 (197)
Q Consensus 159 ----~-~~~-~~~~~~~~~~~~a~~~~~~vl~lDeid~ 190 (197)
. .+. .........++.+.+..|++|++.|+..
T Consensus 359 ~~~~q~~v~~~~g~~~~~~l~~~LR~dPDvI~vGEiRd 396 (564)
T TIGR02538 359 PGINQVNVNPKIGLTFAAALRSFLRQDPDIIMVGEIRD 396 (564)
T ss_pred CCceEEEeccccCCCHHHHHHHHhccCCCEEEeCCCCC
Confidence 0 011 1112456667778888999999999864
No 272
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=98.09 E-value=6.3e-06 Score=68.05 Aligned_cols=73 Identities=22% Similarity=0.326 Sum_probs=46.1
Q ss_pred CCCCceEEECCCCCcHHHHHHHHHHHhCCe------------------------EEEEechhhhhhccCccHHHHHHHHH
Q psy6208 118 KPPRGILLYGPPGTGKTLIARAVANETGAF------------------------FFLINGPEIMSKLAGESESNLRKAFE 173 (197)
Q Consensus 118 ~~~~~ill~G~~GtGKT~la~ala~~~~~~------------------------~~~v~~~~~~~~~~~~~~~~~~~~~~ 173 (197)
+.+..+||+||+|+||+++|+++|+.+.+. ++.+....- +. .-.-..++++.+
T Consensus 20 r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~-~~--~i~id~iR~l~~ 96 (328)
T PRK05707 20 RHPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEA-DK--TIKVDQVRELVS 96 (328)
T ss_pred CcceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCC-CC--CCCHHHHHHHHH
Confidence 346679999999999999999999988442 111111000 00 012245555554
Q ss_pred HHh----cCCCeEEEEcccCccCc
Q psy6208 174 EAD----KNSPSIIFIDELDAIAP 193 (197)
Q Consensus 174 ~a~----~~~~~vl~lDeid~l~~ 193 (197)
.+. .+...|++||++|.|..
T Consensus 97 ~~~~~~~~~~~kv~iI~~a~~m~~ 120 (328)
T PRK05707 97 FVVQTAQLGGRKVVLIEPAEAMNR 120 (328)
T ss_pred HHhhccccCCCeEEEECChhhCCH
Confidence 443 34567999999999865
No 273
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=98.08 E-value=8.3e-06 Score=69.72 Aligned_cols=75 Identities=27% Similarity=0.442 Sum_probs=50.5
Q ss_pred CCCCceEEECCCCCcHHHHHHHHHHHh---CCeEEEEechhhhhhc-----cCccHHH-------HHHHHHHHhcCCCeE
Q psy6208 118 KPPRGILLYGPPGTGKTLIARAVANET---GAFFFLINGPEIMSKL-----AGESESN-------LRKAFEEADKNSPSI 182 (197)
Q Consensus 118 ~~~~~ill~G~~GtGKT~la~ala~~~---~~~~~~v~~~~~~~~~-----~~~~~~~-------~~~~~~~a~~~~~~v 182 (197)
.....++++|++|+||++++++++... +.+|+.++|..+.... .|..... ..+.+.. ....+
T Consensus 160 ~~~~~vli~ge~g~gk~~~a~~ih~~s~~~~~~~i~~~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~---a~~gt 236 (441)
T PRK10365 160 PSEATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVE---ADGGT 236 (441)
T ss_pred CCCCeEEEEecCCCCHHHHHHHHHHcCCCCCCCeeeeeCCCCCHHHHHHHhcCCCCCCcCCCCcCCCCceeE---CCCCE
Confidence 345679999999999999999999776 4689999998663221 1111000 0011122 23568
Q ss_pred EEEcccCccCccc
Q psy6208 183 IFIDELDAIAPKR 195 (197)
Q Consensus 183 l~lDeid~l~~~r 195 (197)
||||||+.|++..
T Consensus 237 l~ldei~~l~~~~ 249 (441)
T PRK10365 237 LFLDEIGDISPMM 249 (441)
T ss_pred EEEeccccCCHHH
Confidence 9999999998753
No 274
>PF05729 NACHT: NACHT domain
Probab=98.08 E-value=8.2e-06 Score=59.88 Aligned_cols=73 Identities=23% Similarity=0.396 Sum_probs=43.0
Q ss_pred ceEEECCCCCcHHHHHHHHHHHh------C---CeEEEEechhhhhhcc------------CccHHHHHH-HHHHHhcCC
Q psy6208 122 GILLYGPPGTGKTLIARAVANET------G---AFFFLINGPEIMSKLA------------GESESNLRK-AFEEADKNS 179 (197)
Q Consensus 122 ~ill~G~~GtGKT~la~ala~~~------~---~~~~~v~~~~~~~~~~------------~~~~~~~~~-~~~~a~~~~ 179 (197)
-++|+|++|+|||++++.++..+ . ..++++.+.+...... ......... .........
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 81 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKNK 81 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcCC
Confidence 47899999999999999998776 1 1233444433322110 001111111 112233455
Q ss_pred CeEEEEcccCccCcc
Q psy6208 180 PSIIFIDELDAIAPK 194 (197)
Q Consensus 180 ~~vl~lDeid~l~~~ 194 (197)
..+|+||.+|.+...
T Consensus 82 ~~llilDglDE~~~~ 96 (166)
T PF05729_consen 82 RVLLILDGLDELEEQ 96 (166)
T ss_pred ceEEEEechHhcccc
Confidence 679999999998874
No 275
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.08 E-value=9.5e-06 Score=64.43 Aligned_cols=30 Identities=27% Similarity=0.436 Sum_probs=25.6
Q ss_pred CCCCCceEEECCCCCcHHHHHHHHHHHhCC
Q psy6208 117 VKPPRGILLYGPPGTGKTLIARAVANETGA 146 (197)
Q Consensus 117 ~~~~~~ill~G~~GtGKT~la~ala~~~~~ 146 (197)
+..+..++|.||+|+|||++++.+++....
T Consensus 13 i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~ 42 (249)
T cd01128 13 IGKGQRGLIVAPPKAGKTTLLQSIANAITK 42 (249)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhcccc
Confidence 345677999999999999999999987743
No 276
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=98.07 E-value=7.3e-06 Score=67.96 Aligned_cols=73 Identities=23% Similarity=0.376 Sum_probs=48.8
Q ss_pred CCCCCceEEECCCCCcHHHHHHHHHHHhC--CeEEEEe-chhhhhh------c------cCccHHHHHHHHHHHhcCCCe
Q psy6208 117 VKPPRGILLYGPPGTGKTLIARAVANETG--AFFFLIN-GPEIMSK------L------AGESESNLRKAFEEADKNSPS 181 (197)
Q Consensus 117 ~~~~~~ill~G~~GtGKT~la~ala~~~~--~~~~~v~-~~~~~~~------~------~~~~~~~~~~~~~~a~~~~~~ 181 (197)
+....++++.|++|+|||++++++..... ..++.+. ..++.-. + .+...-....+++.+.+..|+
T Consensus 159 v~~~~nilI~G~tGSGKTTll~aLl~~i~~~~rivtiEd~~El~l~~~~~v~l~~~~~~~~~~~~t~~~ll~~~LR~~pD 238 (344)
T PRK13851 159 VVGRLTMLLCGPTGSGKTTMSKTLISAIPPQERLITIEDTLELVIPHENHVRLLYSKNGAGLGAVTAEHLLQASLRMRPD 238 (344)
T ss_pred HHcCCeEEEECCCCccHHHHHHHHHcccCCCCCEEEECCCccccCCCCCEEEEEeeccccCcCccCHHHHHHHHhcCCCC
Confidence 45677899999999999999999998763 2333332 1122100 0 011122355677888888999
Q ss_pred EEEEcccC
Q psy6208 182 IIFIDELD 189 (197)
Q Consensus 182 vl~lDeid 189 (197)
.|++.|+-
T Consensus 239 ~IivGEiR 246 (344)
T PRK13851 239 RILLGEMR 246 (344)
T ss_pred eEEEEeeC
Confidence 99999975
No 277
>PRK06762 hypothetical protein; Provisional
Probab=98.07 E-value=2.4e-05 Score=57.99 Aligned_cols=38 Identities=26% Similarity=0.397 Sum_probs=31.1
Q ss_pred CceEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhh
Q psy6208 121 RGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMS 158 (197)
Q Consensus 121 ~~ill~G~~GtGKT~la~ala~~~~~~~~~v~~~~~~~ 158 (197)
.-++|.|+||+|||++|+.+++.++..+..++...+..
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~~D~~r~ 40 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQDVVRR 40 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCeEEecHHHHHH
Confidence 45889999999999999999999866676777665544
No 278
>KOG1514|consensus
Probab=98.07 E-value=1.7e-05 Score=70.07 Aligned_cols=103 Identities=25% Similarity=0.386 Sum_probs=65.1
Q ss_pred ccccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHh----------CCeEEEEechh
Q psy6208 86 DDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANET----------GAFFFLINGPE 155 (197)
Q Consensus 86 ~~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~----------~~~~~~v~~~~ 155 (197)
+.+...+....+|..++...+.. ......++|+|-||||||++++.+-..+ ...++++|+-.
T Consensus 396 ~sLpcRe~E~~~I~~f~~~~i~~--------~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~ 467 (767)
T KOG1514|consen 396 ESLPCRENEFSEIEDFLRSFISD--------QGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLR 467 (767)
T ss_pred ccccchhHHHHHHHHHHHhhcCC--------CCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEccee
Confidence 45677777777777777665332 0223468999999999999999987754 34677788644
Q ss_pred hhh----------hccCccH------HHHHHHHHHH-hcCCCeEEEEcccCccCcccC
Q psy6208 156 IMS----------KLAGESE------SNLRKAFEEA-DKNSPSIIFIDELDAIAPKRE 196 (197)
Q Consensus 156 ~~~----------~~~~~~~------~~~~~~~~~a-~~~~~~vl~lDeid~l~~~r~ 196 (197)
+.+ .+.++.- ..+..-|... ....++||+|||+|.|..++|
T Consensus 468 l~~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~Q 525 (767)
T KOG1514|consen 468 LASPREIYEKIWEALSGERVTWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQ 525 (767)
T ss_pred ecCHHHHHHHHHHhcccCcccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccH
Confidence 432 2222211 1122222210 124578999999999998765
No 279
>KOG3347|consensus
Probab=98.06 E-value=4.5e-06 Score=60.45 Aligned_cols=34 Identities=38% Similarity=0.617 Sum_probs=29.7
Q ss_pred CCCceEEECCCCCcHHHHHHHHHHHhCCeEEEEe
Q psy6208 119 PPRGILLYGPPGTGKTLIARAVANETGAFFFLIN 152 (197)
Q Consensus 119 ~~~~ill~G~~GtGKT~la~ala~~~~~~~~~v~ 152 (197)
..++||++|-||+|||+++.++|..++.+++.++
T Consensus 6 ~~PNILvtGTPG~GKstl~~~lae~~~~~~i~is 39 (176)
T KOG3347|consen 6 ERPNILVTGTPGTGKSTLAERLAEKTGLEYIEIS 39 (176)
T ss_pred cCCCEEEeCCCCCCchhHHHHHHHHhCCceEehh
Confidence 3568999999999999999999999998876654
No 280
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=98.05 E-value=2.5e-06 Score=66.36 Aligned_cols=22 Identities=45% Similarity=0.794 Sum_probs=20.0
Q ss_pred CCceEEECCCCCcHHHHHHHHH
Q psy6208 120 PRGILLYGPPGTGKTLIARAVA 141 (197)
Q Consensus 120 ~~~ill~G~~GtGKT~la~ala 141 (197)
+..+||||+||+|||++|+.++
T Consensus 12 ~~~~liyG~~G~GKtt~a~~~~ 33 (220)
T TIGR01618 12 PNMYLIYGKPGTGKTSTIKYLP 33 (220)
T ss_pred CcEEEEECCCCCCHHHHHHhcC
Confidence 5569999999999999999986
No 281
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=98.05 E-value=1.3e-05 Score=65.67 Aligned_cols=74 Identities=22% Similarity=0.372 Sum_probs=48.2
Q ss_pred CCCCCceEEECCCCCcHHHHHHHHHHHhC--CeEEEEe-chhhhhh------cc------CccHHHHHHHHHHHhcCCCe
Q psy6208 117 VKPPRGILLYGPPGTGKTLIARAVANETG--AFFFLIN-GPEIMSK------LA------GESESNLRKAFEEADKNSPS 181 (197)
Q Consensus 117 ~~~~~~ill~G~~GtGKT~la~ala~~~~--~~~~~v~-~~~~~~~------~~------~~~~~~~~~~~~~a~~~~~~ 181 (197)
+....++++.|++|+|||+++++++.... ...+.+. ..++.-. +. +...-....++..+.+..|+
T Consensus 141 v~~~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ied~~El~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~Lr~~pd 220 (308)
T TIGR02788 141 IASRKNIIISGGTGSGKTTFLKSLVDEIPKDERIITIEDTREIFLPHPNYVHLFYSKGGQGLAKVTPKDLLQSCLRMRPD 220 (308)
T ss_pred hhCCCEEEEECCCCCCHHHHHHHHHccCCccccEEEEcCccccCCCCCCEEEEEecCCCCCcCccCHHHHHHHHhcCCCC
Confidence 45677899999999999999999987762 2233332 1121100 00 11112345677777788999
Q ss_pred EEEEcccCc
Q psy6208 182 IIFIDELDA 190 (197)
Q Consensus 182 vl~lDeid~ 190 (197)
+|++||+-.
T Consensus 221 ~ii~gE~r~ 229 (308)
T TIGR02788 221 RIILGELRG 229 (308)
T ss_pred eEEEeccCC
Confidence 999999853
No 282
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.04 E-value=3.5e-06 Score=73.01 Aligned_cols=46 Identities=28% Similarity=0.458 Sum_probs=34.0
Q ss_pred CcccccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHh
Q psy6208 84 GYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANET 144 (197)
Q Consensus 84 ~~~~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~ 144 (197)
.+.++.|+...++.+.-. +....+++|.||+|+|||++++.++..+
T Consensus 189 d~~~v~Gq~~~~~al~la---------------a~~G~~llliG~~GsGKTtLak~L~gll 234 (506)
T PRK09862 189 DLSDVIGQEQGKRGLEIT---------------AAGGHNLLLIGPPGTGKTMLASRINGLL 234 (506)
T ss_pred CeEEEECcHHHHhhhhee---------------ccCCcEEEEECCCCCcHHHHHHHHhccC
Confidence 566777776655543211 2456789999999999999999998754
No 283
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=98.03 E-value=7.1e-05 Score=57.33 Aligned_cols=34 Identities=35% Similarity=0.478 Sum_probs=25.2
Q ss_pred CCceEEECCCCCcHHHHHHHHHHHh---CCeEEEEec
Q psy6208 120 PRGILLYGPPGTGKTLIARAVANET---GAFFFLING 153 (197)
Q Consensus 120 ~~~ill~G~~GtGKT~la~ala~~~---~~~~~~v~~ 153 (197)
.+..++.|++|||||++++.+...+ +..++.+..
T Consensus 18 ~~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~ap 54 (196)
T PF13604_consen 18 DRVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAP 54 (196)
T ss_dssp CSEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEES
T ss_pred CeEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECC
Confidence 4567889999999999999987655 556666654
No 284
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=98.03 E-value=2.8e-06 Score=74.03 Aligned_cols=73 Identities=29% Similarity=0.468 Sum_probs=52.2
Q ss_pred CCCCceEEECCCCCcHHHHHHHHHHHh--CCeEEEEechhhhhhc-----cCccH--------HHHHHHHHHHhcCCCeE
Q psy6208 118 KPPRGILLYGPPGTGKTLIARAVANET--GAFFFLINGPEIMSKL-----AGESE--------SNLRKAFEEADKNSPSI 182 (197)
Q Consensus 118 ~~~~~ill~G~~GtGKT~la~ala~~~--~~~~~~v~~~~~~~~~-----~~~~~--------~~~~~~~~~a~~~~~~v 182 (197)
.....+++.|+|||||..+++++++.. ..+|+.+||..+.... +|... +..+..++.+.. ..
T Consensus 334 ~~~~pvll~GEtGtGKe~laraiH~~s~~~gpfvAvNCaAip~~liesELFGy~~GafTga~~kG~~g~~~~A~g---Gt 410 (606)
T COG3284 334 ATDLPVLLQGETGTGKEVLARAIHQNSEAAGPFVAVNCAAIPEALIESELFGYVAGAFTGARRKGYKGKLEQADG---GT 410 (606)
T ss_pred hcCCCeEecCCcchhHHHHHHHHHhcccccCCeEEEEeccchHHhhhHHHhccCccccccchhccccccceecCC---Cc
Confidence 445679999999999999999999887 4589999998776443 22222 222333344433 36
Q ss_pred EEEcccCccCc
Q psy6208 183 IFIDELDAIAP 193 (197)
Q Consensus 183 l~lDeid~l~~ 193 (197)
+|+|||+.|+-
T Consensus 411 lFldeIgd~p~ 421 (606)
T COG3284 411 LFLDEIGDMPL 421 (606)
T ss_pred cHHHHhhhchH
Confidence 99999998864
No 285
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.02 E-value=1.4e-05 Score=66.97 Aligned_cols=27 Identities=30% Similarity=0.487 Sum_probs=23.4
Q ss_pred CCCCceEEECCCCCcHHHHHHHHHHHh
Q psy6208 118 KPPRGILLYGPPGTGKTLIARAVANET 144 (197)
Q Consensus 118 ~~~~~ill~G~~GtGKT~la~ala~~~ 144 (197)
..+...+|.||+|+|||+|++.+++..
T Consensus 167 GkGQR~lIvgppGvGKTTLaK~Ian~I 193 (416)
T PRK09376 167 GKGQRGLIVAPPKAGKTVLLQNIANSI 193 (416)
T ss_pred ccCceEEEeCCCCCChhHHHHHHHHHH
Confidence 345568999999999999999999876
No 286
>PRK09354 recA recombinase A; Provisional
Probab=98.01 E-value=2.4e-05 Score=64.76 Aligned_cols=77 Identities=25% Similarity=0.380 Sum_probs=51.0
Q ss_pred CCCCCceEEECCCCCcHHHHHHHHHHH---hCCeEEEEechhhhhh------------c----cCccHHHHHHHHHHHhc
Q psy6208 117 VKPPRGILLYGPPGTGKTLIARAVANE---TGAFFFLINGPEIMSK------------L----AGESESNLRKAFEEADK 177 (197)
Q Consensus 117 ~~~~~~ill~G~~GtGKT~la~ala~~---~~~~~~~v~~~~~~~~------------~----~~~~~~~~~~~~~~a~~ 177 (197)
+....-+.|+||+|+|||+|+..++.. .+..+++++..+-... + ....+..+..+-...+.
T Consensus 57 ip~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~s~~~~~a~~lGvdld~lli~qp~~~Eq~l~i~~~li~s 136 (349)
T PRK09354 57 LPRGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYAKKLGVDIDNLLVSQPDTGEQALEIADTLVRS 136 (349)
T ss_pred CcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhhc
Confidence 555666899999999999999987644 3778888887542211 0 11122222222223345
Q ss_pred CCCeEEEEcccCccCc
Q psy6208 178 NSPSIIFIDELDAIAP 193 (197)
Q Consensus 178 ~~~~vl~lDeid~l~~ 193 (197)
..+++|+||-+..|.+
T Consensus 137 ~~~~lIVIDSvaaL~~ 152 (349)
T PRK09354 137 GAVDLIVVDSVAALVP 152 (349)
T ss_pred CCCCEEEEeChhhhcc
Confidence 6789999999998876
No 287
>PRK03839 putative kinase; Provisional
Probab=98.01 E-value=6e-06 Score=62.18 Aligned_cols=31 Identities=29% Similarity=0.504 Sum_probs=27.9
Q ss_pred ceEEECCCCCcHHHHHHHHHHHhCCeEEEEe
Q psy6208 122 GILLYGPPGTGKTLIARAVANETGAFFFLIN 152 (197)
Q Consensus 122 ~ill~G~~GtGKT~la~ala~~~~~~~~~v~ 152 (197)
.|+|.|+||+||||+++.+|+.++.+++.++
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~~~~id~d 32 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLGYEYVDLT 32 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEehh
Confidence 4899999999999999999999998887654
No 288
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=98.01 E-value=6e-06 Score=73.21 Aligned_cols=73 Identities=23% Similarity=0.327 Sum_probs=47.8
Q ss_pred CCceEEECCCCCcHHHHHHHHHHHhCC--eEEEEechhhhhhccCccH--HHHH--------HHHHHHhcCCCeEEEEcc
Q psy6208 120 PRGILLYGPPGTGKTLIARAVANETGA--FFFLINGPEIMSKLAGESE--SNLR--------KAFEEADKNSPSIIFIDE 187 (197)
Q Consensus 120 ~~~ill~G~~GtGKT~la~ala~~~~~--~~~~v~~~~~~~~~~~~~~--~~~~--------~~~~~a~~~~~~vl~lDe 187 (197)
-.+|||.|++|||||+++++++..++. +|+.+........++|... ..+. +.+..+ ...+|||||
T Consensus 16 ~g~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~~t~d~L~G~idl~~~~~~g~~~~~~G~L~~A---~~GvL~lDE 92 (589)
T TIGR02031 16 LGGVAIRARAGTGKTALARALAEILPPIMPFVELPLGVTEDRLIGGIDVEESLAGGQRVTQPGLLDEA---PRGVLYVDM 92 (589)
T ss_pred cceEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCcccchhhcccchhhhhhhhcCcccCCCCCeeeC---CCCcEeccc
Confidence 357999999999999999999998754 5887775433334444321 0000 011111 235899999
Q ss_pred cCccCccc
Q psy6208 188 LDAIAPKR 195 (197)
Q Consensus 188 id~l~~~r 195 (197)
++.+.++-
T Consensus 93 i~rl~~~~ 100 (589)
T TIGR02031 93 ANLLDDGL 100 (589)
T ss_pred hhhCCHHH
Confidence 99998753
No 289
>PRK13947 shikimate kinase; Provisional
Probab=97.99 E-value=7.4e-06 Score=61.02 Aligned_cols=31 Identities=35% Similarity=0.421 Sum_probs=28.2
Q ss_pred ceEEECCCCCcHHHHHHHHHHHhCCeEEEEe
Q psy6208 122 GILLYGPPGTGKTLIARAVANETGAFFFLIN 152 (197)
Q Consensus 122 ~ill~G~~GtGKT~la~ala~~~~~~~~~v~ 152 (197)
+|+|.|+||+|||++++.+|+.++.+++..+
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~~id~d 33 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFGFIDTD 33 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEEECc
Confidence 5999999999999999999999999886654
No 290
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=97.99 E-value=1.2e-05 Score=67.01 Aligned_cols=23 Identities=48% Similarity=0.640 Sum_probs=21.3
Q ss_pred ceEEECCCCCcHHHHHHHHHHHh
Q psy6208 122 GILLYGPPGTGKTLIARAVANET 144 (197)
Q Consensus 122 ~ill~G~~GtGKT~la~ala~~~ 144 (197)
-+++.|.||||||.+|-.++..+
T Consensus 3 v~~I~G~aGTGKTvla~~l~~~l 25 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNLAKEL 25 (352)
T ss_pred EEEEEecCCcCHHHHHHHHHHHh
Confidence 47899999999999999999887
No 291
>PRK10536 hypothetical protein; Provisional
Probab=97.99 E-value=6.4e-05 Score=59.70 Aligned_cols=23 Identities=43% Similarity=0.508 Sum_probs=20.9
Q ss_pred CceEEECCCCCcHHHHHHHHHHH
Q psy6208 121 RGILLYGPPGTGKTLIARAVANE 143 (197)
Q Consensus 121 ~~ill~G~~GtGKT~la~ala~~ 143 (197)
..+++.||+|||||+||.+++.+
T Consensus 75 ~lV~i~G~aGTGKT~La~a~a~~ 97 (262)
T PRK10536 75 QLIFATGEAGCGKTWISAAKAAE 97 (262)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999999874
No 292
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.99 E-value=2.1e-05 Score=58.38 Aligned_cols=28 Identities=32% Similarity=0.491 Sum_probs=24.3
Q ss_pred CCCCCceEEECCCCCcHHHHHHHHHHHh
Q psy6208 117 VKPPRGILLYGPPGTGKTLIARAVANET 144 (197)
Q Consensus 117 ~~~~~~ill~G~~GtGKT~la~ala~~~ 144 (197)
+.++..+.|+||+|||||+|.+++|...
T Consensus 26 v~~Ge~iaitGPSG~GKStllk~va~Li 53 (223)
T COG4619 26 VRAGEFIAITGPSGCGKSTLLKIVASLI 53 (223)
T ss_pred ecCCceEEEeCCCCccHHHHHHHHHhcc
Confidence 4566679999999999999999998754
No 293
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=97.98 E-value=1.8e-05 Score=68.06 Aligned_cols=78 Identities=26% Similarity=0.449 Sum_probs=52.5
Q ss_pred CCCCCCceEEECCCCCcHHHHHHHHHHHh---CCeEEEEechhhhhhc------cCc--------cHHHHHHHHHHHhcC
Q psy6208 116 GVKPPRGILLYGPPGTGKTLIARAVANET---GAFFFLINGPEIMSKL------AGE--------SESNLRKAFEEADKN 178 (197)
Q Consensus 116 ~~~~~~~ill~G~~GtGKT~la~ala~~~---~~~~~~v~~~~~~~~~------~~~--------~~~~~~~~~~~a~~~ 178 (197)
|+.+..-++|.|+||+|||+|+..++... +.+++|++..+-..+. .+- .+..+..+.+.....
T Consensus 90 Gi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs~~qi~~ra~rlg~~~~~l~~~~e~~~~~I~~~i~~~ 169 (454)
T TIGR00416 90 GIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEESLQQIKMRAIRLGLPEPNLYVLSETNWEQICANIEEE 169 (454)
T ss_pred CccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCCHHHHHHHHHHcCCChHHeEEcCCCCHHHHHHHHHhc
Confidence 35667779999999999999999997655 4578888865432211 010 011234444455556
Q ss_pred CCeEEEEcccCccCc
Q psy6208 179 SPSIIFIDELDAIAP 193 (197)
Q Consensus 179 ~~~vl~lDeid~l~~ 193 (197)
.|++++||.+..+..
T Consensus 170 ~~~~vVIDSIq~l~~ 184 (454)
T TIGR00416 170 NPQACVIDSIQTLYS 184 (454)
T ss_pred CCcEEEEecchhhcc
Confidence 799999999988753
No 294
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=97.97 E-value=2.2e-05 Score=55.26 Aligned_cols=23 Identities=43% Similarity=0.530 Sum_probs=20.0
Q ss_pred ceEEECCCCCcHHHHHHHHHHHh
Q psy6208 122 GILLYGPPGTGKTLIARAVANET 144 (197)
Q Consensus 122 ~ill~G~~GtGKT~la~ala~~~ 144 (197)
++++.||+|+|||+++..++...
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~~~ 24 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILEL 24 (144)
T ss_pred CEEEECCCCCchhHHHHHHHHHH
Confidence 68999999999999888876665
No 295
>PRK00625 shikimate kinase; Provisional
Probab=97.96 E-value=9.1e-06 Score=61.05 Aligned_cols=31 Identities=35% Similarity=0.462 Sum_probs=28.4
Q ss_pred ceEEECCCCCcHHHHHHHHHHHhCCeEEEEe
Q psy6208 122 GILLYGPPGTGKTLIARAVANETGAFFFLIN 152 (197)
Q Consensus 122 ~ill~G~~GtGKT~la~ala~~~~~~~~~v~ 152 (197)
+|+|.|.||+|||++++.+++.++.+++.++
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~~~id~D 32 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSLPFFDTD 32 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEEhh
Confidence 5899999999999999999999998887765
No 296
>PRK06217 hypothetical protein; Validated
Probab=97.95 E-value=9.5e-06 Score=61.36 Aligned_cols=31 Identities=23% Similarity=0.320 Sum_probs=28.0
Q ss_pred ceEEECCCCCcHHHHHHHHHHHhCCeEEEEe
Q psy6208 122 GILLYGPPGTGKTLIARAVANETGAFFFLIN 152 (197)
Q Consensus 122 ~ill~G~~GtGKT~la~ala~~~~~~~~~v~ 152 (197)
.|+|.|.||+|||++++++++.++.+++..+
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D 33 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDIPHLDTD 33 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEEEcC
Confidence 4899999999999999999999998877655
No 297
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=97.95 E-value=4.8e-05 Score=59.98 Aligned_cols=39 Identities=26% Similarity=0.388 Sum_probs=30.7
Q ss_pred CCCCCCceEEECCCCCcHHHHHHHHHHH---hCCeEEEEech
Q psy6208 116 GVKPPRGILLYGPPGTGKTLIARAVANE---TGAFFFLINGP 154 (197)
Q Consensus 116 ~~~~~~~ill~G~~GtGKT~la~ala~~---~~~~~~~v~~~ 154 (197)
|+.++..++++|+||+|||+++..++.+ .|.++++++..
T Consensus 17 G~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~e 58 (237)
T TIGR03877 17 GIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALE 58 (237)
T ss_pred CCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEee
Confidence 4677788999999999999999877554 26677777643
No 298
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=97.95 E-value=3.6e-05 Score=59.11 Aligned_cols=24 Identities=29% Similarity=0.490 Sum_probs=20.9
Q ss_pred CCCceEEECCCCCcHHHHHHHHHH
Q psy6208 119 PPRGILLYGPPGTGKTLIARAVAN 142 (197)
Q Consensus 119 ~~~~ill~G~~GtGKT~la~ala~ 142 (197)
....++|.||+|+|||++++.++.
T Consensus 24 ~g~~~~ltGpNg~GKSTllr~i~~ 47 (199)
T cd03283 24 KKNGILITGSNMSGKSTFLRTIGV 47 (199)
T ss_pred CCcEEEEECCCCCChHHHHHHHHH
Confidence 345689999999999999999974
No 299
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=97.95 E-value=3.9e-05 Score=63.15 Aligned_cols=28 Identities=21% Similarity=0.221 Sum_probs=24.6
Q ss_pred CCCCceEEECCCCCcHHHHHHHHHHHhC
Q psy6208 118 KPPRGILLYGPPGTGKTLIARAVANETG 145 (197)
Q Consensus 118 ~~~~~ill~G~~GtGKT~la~ala~~~~ 145 (197)
.-+..+||+||+|+||+++|+++|+.+.
T Consensus 22 rl~HA~Lf~G~~G~GK~~lA~~~A~~ll 49 (325)
T PRK06871 22 LGHHALLFKADSGLGTEQLIRALAQWLM 49 (325)
T ss_pred CcceeEEeECCCCCCHHHHHHHHHHHHc
Confidence 4466899999999999999999998873
No 300
>PHA02774 E1; Provisional
Probab=97.94 E-value=3.4e-05 Score=67.46 Aligned_cols=37 Identities=22% Similarity=0.521 Sum_probs=29.8
Q ss_pred CCCCCceEEECCCCCcHHHHHHHHHHHhCC-eEEEEec
Q psy6208 117 VKPPRGILLYGPPGTGKTLIARAVANETGA-FFFLING 153 (197)
Q Consensus 117 ~~~~~~ill~G~~GtGKT~la~ala~~~~~-~~~~v~~ 153 (197)
.+..++++|+||||||||+++.+|++.++. .+.++|.
T Consensus 431 ~PKknciv~~GPP~TGKS~fa~sL~~~L~G~vi~fvN~ 468 (613)
T PHA02774 431 IPKKNCLVIYGPPDTGKSMFCMSLIKFLKGKVISFVNS 468 (613)
T ss_pred CCcccEEEEECCCCCCHHHHHHHHHHHhCCCEEEEEEC
Confidence 444568999999999999999999999854 4455664
No 301
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=97.94 E-value=1.1e-05 Score=58.88 Aligned_cols=31 Identities=35% Similarity=0.538 Sum_probs=27.4
Q ss_pred ceEEECCCCCcHHHHHHHHHHHhCCeEEEEe
Q psy6208 122 GILLYGPPGTGKTLIARAVANETGAFFFLIN 152 (197)
Q Consensus 122 ~ill~G~~GtGKT~la~ala~~~~~~~~~v~ 152 (197)
+|+|+|+||+|||++++.++..++.+++..+
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l~~~~~~~d 31 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKALGLPFVDLD 31 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCCCEEEch
Confidence 4899999999999999999999998876544
No 302
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=97.93 E-value=2e-05 Score=63.29 Aligned_cols=69 Identities=23% Similarity=0.319 Sum_probs=42.4
Q ss_pred CceEEECCCCCcHHHHHHHHHHHhC----------CeEEEEe-chhhhhhcc-------Cc------cHHHHHHHHHHHh
Q psy6208 121 RGILLYGPPGTGKTLIARAVANETG----------AFFFLIN-GPEIMSKLA-------GE------SESNLRKAFEEAD 176 (197)
Q Consensus 121 ~~ill~G~~GtGKT~la~ala~~~~----------~~~~~v~-~~~~~~~~~-------~~------~~~~~~~~~~~a~ 176 (197)
.+++|.||+|+|||+++++++..+. ..+..++ ..++..... +. .......++...+
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~~~r~~v~~~~~k~~~~~~~i~ 191 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQHDVGIRTDVLDGCPKAEGMMMLIR 191 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHHHHhcccccccccccccccccchHHHHHHHHHH
Confidence 5899999999999999999998762 1222222 123321110 00 0112234455555
Q ss_pred cCCCeEEEEcccC
Q psy6208 177 KNSPSIIFIDELD 189 (197)
Q Consensus 177 ~~~~~vl~lDeid 189 (197)
...|+++++||+.
T Consensus 192 ~~~P~villDE~~ 204 (270)
T TIGR02858 192 SMSPDVIVVDEIG 204 (270)
T ss_pred hCCCCEEEEeCCC
Confidence 5789999999964
No 303
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=97.91 E-value=1.2e-05 Score=60.47 Aligned_cols=29 Identities=21% Similarity=0.421 Sum_probs=25.1
Q ss_pred eEEECCCCCcHHHHHHHHHHHhCCeEEEE
Q psy6208 123 ILLYGPPGTGKTLIARAVANETGAFFFLI 151 (197)
Q Consensus 123 ill~G~~GtGKT~la~ala~~~~~~~~~v 151 (197)
|+|.|+||+|||++++.++..++...+..
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~~~~is~ 30 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFGFTHLSA 30 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEEC
Confidence 68999999999999999999998655443
No 304
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=97.91 E-value=0.00012 Score=59.25 Aligned_cols=67 Identities=28% Similarity=0.352 Sum_probs=42.3
Q ss_pred CCceEEECCCCCcHHHHHHHHHHHh----C-CeEEEEechhhh-------hh---------ccCccHHHHHHHHHHHhcC
Q psy6208 120 PRGILLYGPPGTGKTLIARAVANET----G-AFFFLINGPEIM-------SK---------LAGESESNLRKAFEEADKN 178 (197)
Q Consensus 120 ~~~ill~G~~GtGKT~la~ala~~~----~-~~~~~v~~~~~~-------~~---------~~~~~~~~~~~~~~~a~~~ 178 (197)
+..++|.||+|+||||++..++..+ + ..+..+++.... .. ........+...++...
T Consensus 194 ~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~~~~~~~~l~~~l~~~~-- 271 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRIGAVEQLKTYAKILGVPVKVARDPKELRKALDRLR-- 271 (282)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccchhHHHHHHHHHHHhCCceeccCCHHHHHHHHHHcc--
Confidence 4468899999999999999998755 3 566667654321 00 01122334444444442
Q ss_pred CCeEEEEccc
Q psy6208 179 SPSIIFIDEL 188 (197)
Q Consensus 179 ~~~vl~lDei 188 (197)
..++|+||..
T Consensus 272 ~~d~vliDt~ 281 (282)
T TIGR03499 272 DKDLILIDTA 281 (282)
T ss_pred CCCEEEEeCC
Confidence 3689999975
No 305
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.90 E-value=3.9e-05 Score=59.51 Aligned_cols=39 Identities=46% Similarity=0.599 Sum_probs=31.4
Q ss_pred CCCCCCceEEECCCCCcHHHHHHHHHHHh---CCeEEEEech
Q psy6208 116 GVKPPRGILLYGPPGTGKTLIARAVANET---GAFFFLINGP 154 (197)
Q Consensus 116 ~~~~~~~ill~G~~GtGKT~la~ala~~~---~~~~~~v~~~ 154 (197)
|+....-++|+|+||+|||+++..++... +.++++++..
T Consensus 15 Gi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e 56 (218)
T cd01394 15 GVERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTE 56 (218)
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECC
Confidence 35556668999999999999999998765 5688888654
No 306
>PRK14532 adenylate kinase; Provisional
Probab=97.90 E-value=1.3e-05 Score=60.68 Aligned_cols=30 Identities=30% Similarity=0.633 Sum_probs=26.4
Q ss_pred ceEEECCCCCcHHHHHHHHHHHhCCeEEEE
Q psy6208 122 GILLYGPPGTGKTLIARAVANETGAFFFLI 151 (197)
Q Consensus 122 ~ill~G~~GtGKT~la~ala~~~~~~~~~v 151 (197)
.|+|.|+||+|||++++.+|+..+..++..
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g~~~is~ 31 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERGMVQLST 31 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeEEeC
Confidence 489999999999999999999998766544
No 307
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.89 E-value=1.4e-05 Score=64.40 Aligned_cols=28 Identities=36% Similarity=0.555 Sum_probs=23.5
Q ss_pred CCCCceEEECCCCCcHHHHHHHHHHHhC
Q psy6208 118 KPPRGILLYGPPGTGKTLIARAVANETG 145 (197)
Q Consensus 118 ~~~~~ill~G~~GtGKT~la~ala~~~~ 145 (197)
....++||.||+|||||.+++.+-..+.
T Consensus 31 ~~~~pvLl~G~~GtGKT~li~~~l~~l~ 58 (272)
T PF12775_consen 31 SNGRPVLLVGPSGTGKTSLIQNFLSSLD 58 (272)
T ss_dssp HCTEEEEEESSTTSSHHHHHHHHHHCST
T ss_pred HcCCcEEEECCCCCchhHHHHhhhccCC
Confidence 3467899999999999999998776653
No 308
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.88 E-value=2e-05 Score=59.52 Aligned_cols=27 Identities=41% Similarity=0.774 Sum_probs=23.6
Q ss_pred ceEEECCCCCcHHHHHHHHHHHhCCeE
Q psy6208 122 GILLYGPPGTGKTLIARAVANETGAFF 148 (197)
Q Consensus 122 ~ill~G~~GtGKT~la~ala~~~~~~~ 148 (197)
.|+|.||||+||||+|+.|++.++.+-
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~i~h 28 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLGLPH 28 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCcE
Confidence 489999999999999999999965543
No 309
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=97.88 E-value=5.5e-05 Score=62.66 Aligned_cols=28 Identities=18% Similarity=0.280 Sum_probs=24.7
Q ss_pred CCCCceEEECCCCCcHHHHHHHHHHHhC
Q psy6208 118 KPPRGILLYGPPGTGKTLIARAVANETG 145 (197)
Q Consensus 118 ~~~~~ill~G~~GtGKT~la~ala~~~~ 145 (197)
+.+..+||+||+|+||+++|.++|+.+-
T Consensus 22 rl~HA~Lf~G~~G~Gk~~lA~~~A~~Ll 49 (334)
T PRK07993 22 RGHHALLIQALPGMGDDALIYALSRWLM 49 (334)
T ss_pred CcceEEeeECCCCCCHHHHHHHHHHHHc
Confidence 4567899999999999999999998873
No 310
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=97.88 E-value=4.7e-05 Score=72.65 Aligned_cols=52 Identities=27% Similarity=0.489 Sum_probs=40.1
Q ss_pred CCcccccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHhC
Q psy6208 83 VGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANETG 145 (197)
Q Consensus 83 ~~~~~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~~ 145 (197)
..+++++|.+..++++...+... ....+-+-|+|++|+||||||+++++...
T Consensus 181 ~~~~~~vG~~~~l~~l~~lL~l~-----------~~~~~vvgI~G~gGiGKTTLA~~l~~~l~ 232 (1153)
T PLN03210 181 NDFEDFVGIEDHIAKMSSLLHLE-----------SEEVRMVGIWGSSGIGKTTIARALFSRLS 232 (1153)
T ss_pred cccccccchHHHHHHHHHHHccc-----------cCceEEEEEEcCCCCchHHHHHHHHHHHh
Confidence 45667888888888887776421 23445688999999999999999988763
No 311
>PRK13949 shikimate kinase; Provisional
Probab=97.87 E-value=1.4e-05 Score=59.77 Aligned_cols=31 Identities=39% Similarity=0.581 Sum_probs=28.5
Q ss_pred ceEEECCCCCcHHHHHHHHHHHhCCeEEEEe
Q psy6208 122 GILLYGPPGTGKTLIARAVANETGAFFFLIN 152 (197)
Q Consensus 122 ~ill~G~~GtGKT~la~ala~~~~~~~~~v~ 152 (197)
.|+|.|+||+|||++++.+|+.++.+++..+
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~~~~id~D 33 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELGLSFIDLD 33 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCCeeccc
Confidence 5899999999999999999999998887766
No 312
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=97.87 E-value=1.5e-05 Score=59.77 Aligned_cols=34 Identities=29% Similarity=0.352 Sum_probs=28.2
Q ss_pred CceEEECCCCCcHHHHHHHHHHHhCCeEEEEech
Q psy6208 121 RGILLYGPPGTGKTLIARAVANETGAFFFLINGP 154 (197)
Q Consensus 121 ~~ill~G~~GtGKT~la~ala~~~~~~~~~v~~~ 154 (197)
.-|+|.|+||+|||+++++++..++.+++.++..
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~D 36 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLAEPWLHFGVD 36 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhCCCccccCcc
Confidence 4689999999999999999999987766655443
No 313
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=97.86 E-value=4.6e-05 Score=63.67 Aligned_cols=72 Identities=18% Similarity=0.299 Sum_probs=45.0
Q ss_pred CCCceEEECCCCCcHHHHHHHHHHHhC------CeEEEEech-hhhhh-------c-----cCccHHHHHHHHHHHhcCC
Q psy6208 119 PPRGILLYGPPGTGKTLIARAVANETG------AFFFLINGP-EIMSK-------L-----AGESESNLRKAFEEADKNS 179 (197)
Q Consensus 119 ~~~~ill~G~~GtGKT~la~ala~~~~------~~~~~v~~~-~~~~~-------~-----~~~~~~~~~~~~~~a~~~~ 179 (197)
+...++++||+|+|||+++++++.... ..++.+.-+ ++.-. . .+.........++.+.+..
T Consensus 133 ~~glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~EdpiE~~~~~~~~~~~~v~Q~~v~~~~~~~~~~l~~aLR~~ 212 (358)
T TIGR02524 133 QEGIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPIEFVYDEIETISASVCQSEIPRHLNNFAAGVRNALRRK 212 (358)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCceEeccccccccceeeeeeccccccCHHHHHHHHhccC
Confidence 355699999999999999999987761 234333211 11100 0 0111123445566677778
Q ss_pred CeEEEEcccCc
Q psy6208 180 PSIIFIDELDA 190 (197)
Q Consensus 180 ~~vl~lDeid~ 190 (197)
|+++++.|+..
T Consensus 213 Pd~i~vGEiRd 223 (358)
T TIGR02524 213 PHAILVGEARD 223 (358)
T ss_pred CCEEeeeeeCC
Confidence 99999999753
No 314
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.86 E-value=0.00014 Score=62.16 Aligned_cols=73 Identities=26% Similarity=0.345 Sum_probs=46.4
Q ss_pred CCCceEEECCCCCcHHHHHHHHHHHh---CCeEEEEechhhhh-----------h----ccCc-----cHHHHHHHHHHH
Q psy6208 119 PPRGILLYGPPGTGKTLIARAVANET---GAFFFLINGPEIMS-----------K----LAGE-----SESNLRKAFEEA 175 (197)
Q Consensus 119 ~~~~ill~G~~GtGKT~la~ala~~~---~~~~~~v~~~~~~~-----------~----~~~~-----~~~~~~~~~~~a 175 (197)
.+..++++|++|+|||+++..+|..+ +.++..+++..... . .... ....+...++.+
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~~~ 173 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLEKF 173 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHHh
Confidence 46678999999999999999998776 56666666543211 0 1111 111233444444
Q ss_pred hcCCCeEEEEcccCccCc
Q psy6208 176 DKNSPSIIFIDELDAIAP 193 (197)
Q Consensus 176 ~~~~~~vl~lDeid~l~~ 193 (197)
.. .++|+||....+..
T Consensus 174 ~~--~DvVIIDTAGr~~~ 189 (437)
T PRK00771 174 KK--ADVIIVDTAGRHAL 189 (437)
T ss_pred hc--CCEEEEECCCcccc
Confidence 33 38999999877653
No 315
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=97.86 E-value=1.7e-05 Score=57.79 Aligned_cols=28 Identities=36% Similarity=0.629 Sum_probs=24.8
Q ss_pred eEEECCCCCcHHHHHHHHHHHhCCeEEE
Q psy6208 123 ILLYGPPGTGKTLIARAVANETGAFFFL 150 (197)
Q Consensus 123 ill~G~~GtGKT~la~ala~~~~~~~~~ 150 (197)
++|.|+||+|||++++.+++.++..++.
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~~~~~i~ 29 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERLGAPFID 29 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhcCCEEEe
Confidence 6899999999999999999998876654
No 316
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=97.86 E-value=5e-05 Score=55.22 Aligned_cols=71 Identities=23% Similarity=0.367 Sum_probs=41.8
Q ss_pred CCCCCceEEECCCCCcHHHHHHHHHHHhCC--eEEEEechh---hhhhccCccHHHHHHHHHHHhcCCCeEEEEcccC
Q psy6208 117 VKPPRGILLYGPPGTGKTLIARAVANETGA--FFFLINGPE---IMSKLAGESESNLRKAFEEADKNSPSIIFIDELD 189 (197)
Q Consensus 117 ~~~~~~ill~G~~GtGKT~la~ala~~~~~--~~~~v~~~~---~~~~~~~~~~~~~~~~~~~a~~~~~~vl~lDeid 189 (197)
+.++..+.|.|++|+|||+|+++++..... --+.++... +...+. ..+ ..+-.+..+...+|.++++||-.
T Consensus 23 ~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~~~i~~~~~lS-~G~-~~rv~laral~~~p~illlDEP~ 98 (144)
T cd03221 23 INPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTVKIGYFEQLS-GGE-KMRLALAKLLLENPNLLLLDEPT 98 (144)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCeEEEEEEccCC-HHH-HHHHHHHHHHhcCCCEEEEeCCc
Confidence 356667899999999999999999876521 011222110 000111 111 22223455555679999999964
No 317
>PRK14974 cell division protein FtsY; Provisional
Probab=97.85 E-value=0.00024 Score=58.84 Aligned_cols=74 Identities=23% Similarity=0.313 Sum_probs=45.5
Q ss_pred CCceEEECCCCCcHHHHHHHHHHHh---CCeEEEEechhhh-------hh--------cc----Ccc-HHHHHHHHHHHh
Q psy6208 120 PRGILLYGPPGTGKTLIARAVANET---GAFFFLINGPEIM-------SK--------LA----GES-ESNLRKAFEEAD 176 (197)
Q Consensus 120 ~~~ill~G~~GtGKT~la~ala~~~---~~~~~~v~~~~~~-------~~--------~~----~~~-~~~~~~~~~~a~ 176 (197)
+.-++|.|++|+|||+++..+|..+ +.++..+++..+. .. .. +.. ...+....+.+.
T Consensus 140 ~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~~~~ 219 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIEHAK 219 (336)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHHHHH
Confidence 5568999999999999998888765 5566556543211 00 00 000 112233334444
Q ss_pred cCCCeEEEEcccCccCc
Q psy6208 177 KNSPSIIFIDELDAIAP 193 (197)
Q Consensus 177 ~~~~~vl~lDeid~l~~ 193 (197)
....++|+||..+.+..
T Consensus 220 ~~~~DvVLIDTaGr~~~ 236 (336)
T PRK14974 220 ARGIDVVLIDTAGRMHT 236 (336)
T ss_pred hCCCCEEEEECCCccCC
Confidence 44568999999988754
No 318
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=97.85 E-value=1.2e-05 Score=61.85 Aligned_cols=36 Identities=39% Similarity=0.553 Sum_probs=27.7
Q ss_pred eEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhh
Q psy6208 123 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMS 158 (197)
Q Consensus 123 ill~G~~GtGKT~la~ala~~~~~~~~~v~~~~~~~ 158 (197)
++|+||+|||||.++-++|+..|.+++..+.-....
T Consensus 4 ~~i~GpT~tGKt~~ai~lA~~~g~pvI~~Driq~y~ 39 (233)
T PF01745_consen 4 YLIVGPTGTGKTALAIALAQKTGAPVISLDRIQCYP 39 (233)
T ss_dssp EEEE-STTSSHHHHHHHHHHHH--EEEEE-SGGG-G
T ss_pred EEEECCCCCChhHHHHHHHHHhCCCEEEecceeccc
Confidence 689999999999999999999999999988655443
No 319
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=97.85 E-value=1.8e-05 Score=58.59 Aligned_cols=29 Identities=41% Similarity=0.567 Sum_probs=25.0
Q ss_pred eEEECCCCCcHHHHHHHHHHHhCCeEEEE
Q psy6208 123 ILLYGPPGTGKTLIARAVANETGAFFFLI 151 (197)
Q Consensus 123 ill~G~~GtGKT~la~ala~~~~~~~~~v 151 (197)
++|.||+|+|||++++.++..++..++..
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~~v~~ 29 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAKFIEG 29 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCeEEeC
Confidence 57899999999999999999998666543
No 320
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=97.85 E-value=2.3e-05 Score=69.88 Aligned_cols=51 Identities=27% Similarity=0.430 Sum_probs=43.2
Q ss_pred cCCCCcccccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHhC
Q psy6208 80 SNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANETG 145 (197)
Q Consensus 80 ~~~~~~~~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~~ 145 (197)
.++..|+++.|++.++..+...+.. ..+++|+||||+|||++++++++.+.
T Consensus 25 ~~~~~~~~vigq~~a~~~L~~~~~~---------------~~~~l~~G~~G~GKttla~~l~~~l~ 75 (637)
T PRK13765 25 VPERLIDQVIGQEHAVEVIKKAAKQ---------------RRHVMMIGSPGTGKSMLAKAMAELLP 75 (637)
T ss_pred cCcccHHHcCChHHHHHHHHHHHHh---------------CCeEEEECCCCCcHHHHHHHHHHHcC
Confidence 3457889999999999988877653 34799999999999999999998874
No 321
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.84 E-value=0.00022 Score=60.13 Aligned_cols=72 Identities=21% Similarity=0.266 Sum_probs=44.8
Q ss_pred CCceEEECCCCCcHHHHHHHHHHHh-------CCeEEEEechhhh----------hh------ccCccHHHHHHHHHHHh
Q psy6208 120 PRGILLYGPPGTGKTLIARAVANET-------GAFFFLINGPEIM----------SK------LAGESESNLRKAFEEAD 176 (197)
Q Consensus 120 ~~~ill~G~~GtGKT~la~ala~~~-------~~~~~~v~~~~~~----------~~------~~~~~~~~~~~~~~~a~ 176 (197)
+..++|.||+|+|||+++..+|..+ +..+..+++.... .. ........+...+...
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~- 252 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS- 252 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh-
Confidence 4568999999999999999998764 2445444432211 00 0112223344444443
Q ss_pred cCCCeEEEEcccCccCc
Q psy6208 177 KNSPSIIFIDELDAIAP 193 (197)
Q Consensus 177 ~~~~~vl~lDeid~l~~ 193 (197)
...++|+||.++.+..
T Consensus 253 -~~~DlVLIDTaGr~~~ 268 (388)
T PRK12723 253 -KDFDLVLVDTIGKSPK 268 (388)
T ss_pred -CCCCEEEEcCCCCCcc
Confidence 3468999999998764
No 322
>PRK14530 adenylate kinase; Provisional
Probab=97.84 E-value=2.2e-05 Score=60.89 Aligned_cols=31 Identities=35% Similarity=0.488 Sum_probs=27.1
Q ss_pred CceEEECCCCCcHHHHHHHHHHHhCCeEEEE
Q psy6208 121 RGILLYGPPGTGKTLIARAVANETGAFFFLI 151 (197)
Q Consensus 121 ~~ill~G~~GtGKT~la~ala~~~~~~~~~v 151 (197)
..|+|.|+||+|||++++.++..++.+++..
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~~~~~~i~~ 34 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEEFGVEHVTT 34 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 3699999999999999999999998776643
No 323
>PRK14531 adenylate kinase; Provisional
Probab=97.84 E-value=2.1e-05 Score=59.47 Aligned_cols=31 Identities=29% Similarity=0.518 Sum_probs=27.0
Q ss_pred CceEEECCCCCcHHHHHHHHHHHhCCeEEEE
Q psy6208 121 RGILLYGPPGTGKTLIARAVANETGAFFFLI 151 (197)
Q Consensus 121 ~~ill~G~~GtGKT~la~ala~~~~~~~~~v 151 (197)
..|++.|+||+|||++++.++..++..++..
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g~~~is~ 33 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHGLRHLST 33 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeEec
Confidence 3599999999999999999999998776543
No 324
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=97.82 E-value=6.5e-05 Score=62.87 Aligned_cols=78 Identities=24% Similarity=0.441 Sum_probs=58.2
Q ss_pred CCCCCceEEECCCCCcHHHHHHHHHHHh--CCeEEEEechhhhhhc--------------cCccHHHHHHHHHHHhcCCC
Q psy6208 117 VKPPRGILLYGPPGTGKTLIARAVANET--GAFFFLINGPEIMSKL--------------AGESESNLRKAFEEADKNSP 180 (197)
Q Consensus 117 ~~~~~~ill~G~~GtGKT~la~ala~~~--~~~~~~v~~~~~~~~~--------------~~~~~~~~~~~~~~a~~~~~ 180 (197)
+-+..-+||-|.||.|||+|+-.++..+ ..+++|++.++-..+. .-..+.++..+.+.....+|
T Consensus 90 ~V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~~vLYVsGEES~~QiklRA~RL~~~~~~l~l~aEt~~e~I~~~l~~~~p 169 (456)
T COG1066 90 LVPGSVILIGGDPGIGKSTLLLQVAARLAKRGKVLYVSGEESLQQIKLRADRLGLPTNNLYLLAETNLEDIIAELEQEKP 169 (456)
T ss_pred cccccEEEEccCCCCCHHHHHHHHHHHHHhcCcEEEEeCCcCHHHHHHHHHHhCCCccceEEehhcCHHHHHHHHHhcCC
Confidence 3456668999999999999999888776 3389999976543221 11234566777777777889
Q ss_pred eEEEEcccCccCcc
Q psy6208 181 SIIFIDELDAIAPK 194 (197)
Q Consensus 181 ~vl~lDeid~l~~~ 194 (197)
++++||-|+.+...
T Consensus 170 ~lvVIDSIQT~~s~ 183 (456)
T COG1066 170 DLVVIDSIQTLYSE 183 (456)
T ss_pred CEEEEeccceeecc
Confidence 99999999887654
No 325
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=97.82 E-value=2.1e-05 Score=59.63 Aligned_cols=29 Identities=41% Similarity=0.618 Sum_probs=25.7
Q ss_pred eEEECCCCCcHHHHHHHHHHHhCCeEEEE
Q psy6208 123 ILLYGPPGTGKTLIARAVANETGAFFFLI 151 (197)
Q Consensus 123 ill~G~~GtGKT~la~ala~~~~~~~~~v 151 (197)
|+|.|+||+|||++++.|+..++..++.+
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~~~~i~~ 30 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYGLPHIST 30 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEEC
Confidence 79999999999999999999988766554
No 326
>PRK04132 replication factor C small subunit; Provisional
Probab=97.82 E-value=3.2e-05 Score=70.78 Aligned_cols=66 Identities=29% Similarity=0.347 Sum_probs=48.1
Q ss_pred eEEEC--CCCCcHHHHHHHHHHHh-----CCeEEEEechhhhhhccCccHHHHHHHHHHHhcC------CCeEEEEcccC
Q psy6208 123 ILLYG--PPGTGKTLIARAVANET-----GAFFFLINGPEIMSKLAGESESNLRKAFEEADKN------SPSIIFIDELD 189 (197)
Q Consensus 123 ill~G--~~GtGKT~la~ala~~~-----~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~a~~~------~~~vl~lDeid 189 (197)
-++.| |++.|||++|+++|+++ +..++.+|+++.. .-..++...+.+... ...|+||||+|
T Consensus 567 ~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~r------gid~IR~iIk~~a~~~~~~~~~~KVvIIDEaD 640 (846)
T PRK04132 567 NFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDER------GINVIREKVKEFARTKPIGGASFKIIFLDEAD 640 (846)
T ss_pred hhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCcc------cHHHHHHHHHHHHhcCCcCCCCCEEEEEECcc
Confidence 46678 99999999999999997 4579999998742 223455544433221 23699999999
Q ss_pred ccCcc
Q psy6208 190 AIAPK 194 (197)
Q Consensus 190 ~l~~~ 194 (197)
.|...
T Consensus 641 ~Lt~~ 645 (846)
T PRK04132 641 ALTQD 645 (846)
T ss_pred cCCHH
Confidence 99754
No 327
>PRK13948 shikimate kinase; Provisional
Probab=97.82 E-value=2.7e-05 Score=58.99 Aligned_cols=35 Identities=26% Similarity=0.308 Sum_probs=31.3
Q ss_pred CCCCceEEECCCCCcHHHHHHHHHHHhCCeEEEEe
Q psy6208 118 KPPRGILLYGPPGTGKTLIARAVANETGAFFFLIN 152 (197)
Q Consensus 118 ~~~~~ill~G~~GtGKT~la~ala~~~~~~~~~v~ 152 (197)
.++..|+|.|.+|+|||++++.+++.++.+++..+
T Consensus 8 ~~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D 42 (182)
T PRK13948 8 RPVTWVALAGFMGTGKSRIGWELSRALMLHFIDTD 42 (182)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEECC
Confidence 45678999999999999999999999999988655
No 328
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=97.81 E-value=5.5e-05 Score=60.01 Aligned_cols=34 Identities=26% Similarity=0.478 Sum_probs=27.9
Q ss_pred eEEECCCCCcHHHHHHHHHHHh---CCeEEEEechhh
Q psy6208 123 ILLYGPPGTGKTLIARAVANET---GAFFFLINGPEI 156 (197)
Q Consensus 123 ill~G~~GtGKT~la~ala~~~---~~~~~~v~~~~~ 156 (197)
|+|.|.||+|||++|++++..+ +..++.++...+
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~l 38 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDLI 38 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccHHH
Confidence 7899999999999999999887 456777765444
No 329
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=97.80 E-value=2.3e-05 Score=56.56 Aligned_cols=30 Identities=30% Similarity=0.576 Sum_probs=27.3
Q ss_pred eEEECCCCCcHHHHHHHHHHHhCCeEEEEe
Q psy6208 123 ILLYGPPGTGKTLIARAVANETGAFFFLIN 152 (197)
Q Consensus 123 ill~G~~GtGKT~la~ala~~~~~~~~~v~ 152 (197)
|.|.|+||+|||++++.++..++.+++..+
T Consensus 2 I~i~G~~GsGKst~a~~la~~~~~~~~~~~ 31 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKLGLPYLDTG 31 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceeccc
Confidence 689999999999999999999998887665
No 330
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=97.80 E-value=7.2e-05 Score=60.13 Aligned_cols=69 Identities=25% Similarity=0.355 Sum_probs=37.8
Q ss_pred eEEECCCCCcHHHHHHHHHHHh---CCeEEEEechhhhh---hc-cCccHHHHHHH----HHHHhcCCCeEEEEcccCcc
Q psy6208 123 ILLYGPPGTGKTLIARAVANET---GAFFFLINGPEIMS---KL-AGESESNLRKA----FEEADKNSPSIIFIDELDAI 191 (197)
Q Consensus 123 ill~G~~GtGKT~la~ala~~~---~~~~~~v~~~~~~~---~~-~~~~~~~~~~~----~~~a~~~~~~vl~lDeid~l 191 (197)
|+|+|-||+|||++|+.|+..+ +..+..++...+.- .| -...++..+.. ++++.. ...|+|+|+...+
T Consensus 4 iil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~~~~~~y~~~~~Ek~~R~~l~s~v~r~ls-~~~iVI~Dd~nYi 82 (270)
T PF08433_consen 4 IILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLGIDRNDYADSKKEKEARGSLKSAVERALS-KDTIVILDDNNYI 82 (270)
T ss_dssp EEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH-TTSSS--GGGHHHHHHHHHHHHHHHHT-T-SEEEE-S---S
T ss_pred EEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccccchhhhhchhhhHHHHHHHHHHHHHhhc-cCeEEEEeCCchH
Confidence 7899999999999999998875 56777777554431 11 12234444433 344433 3479999997655
Q ss_pred C
Q psy6208 192 A 192 (197)
Q Consensus 192 ~ 192 (197)
-
T Consensus 83 K 83 (270)
T PF08433_consen 83 K 83 (270)
T ss_dssp H
T ss_pred H
Confidence 3
No 331
>PRK06547 hypothetical protein; Provisional
Probab=97.79 E-value=3.5e-05 Score=57.86 Aligned_cols=35 Identities=31% Similarity=0.420 Sum_probs=28.8
Q ss_pred CCCCceEEECCCCCcHHHHHHHHHHHhCCeEEEEe
Q psy6208 118 KPPRGILLYGPPGTGKTLIARAVANETGAFFFLIN 152 (197)
Q Consensus 118 ~~~~~ill~G~~GtGKT~la~ala~~~~~~~~~v~ 152 (197)
..+.-|+|.|++|+|||++++.+++.++..++..+
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~~d 47 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAARTGFQLVHLD 47 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhCCCeeccc
Confidence 34556889999999999999999999887766543
No 332
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.79 E-value=9.5e-05 Score=56.68 Aligned_cols=73 Identities=25% Similarity=0.318 Sum_probs=43.6
Q ss_pred CceEEECCCCCcHHHHHHHHHHHh---CCeEEEEechhhh--------------h-hcc----C-ccHHHHHHHHHHHhc
Q psy6208 121 RGILLYGPPGTGKTLIARAVANET---GAFFFLINGPEIM--------------S-KLA----G-ESESNLRKAFEEADK 177 (197)
Q Consensus 121 ~~ill~G~~GtGKT~la~ala~~~---~~~~~~v~~~~~~--------------~-~~~----~-~~~~~~~~~~~~a~~ 177 (197)
.-++|.||+|+|||+.+-.+|..+ +..+..+++.... + .+. . .......+.++....
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~~~ 81 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKFRK 81 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHHhh
Confidence 458999999999999999888766 5555555532221 0 000 1 112234455566555
Q ss_pred CCCeEEEEcccCccCc
Q psy6208 178 NSPSIIFIDELDAIAP 193 (197)
Q Consensus 178 ~~~~vl~lDeid~l~~ 193 (197)
...++|+||-......
T Consensus 82 ~~~D~vlIDT~Gr~~~ 97 (196)
T PF00448_consen 82 KGYDLVLIDTAGRSPR 97 (196)
T ss_dssp TTSSEEEEEE-SSSST
T ss_pred cCCCEEEEecCCcchh
Confidence 5578999998766543
No 333
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.79 E-value=0.00033 Score=59.02 Aligned_cols=74 Identities=22% Similarity=0.194 Sum_probs=48.1
Q ss_pred CCceEEECCCCCcHHHHHHHHHHHh---CCeEEEEechhhh-------hhc---------cCccHHHHHHHHHHHhc-CC
Q psy6208 120 PRGILLYGPPGTGKTLIARAVANET---GAFFFLINGPEIM-------SKL---------AGESESNLRKAFEEADK-NS 179 (197)
Q Consensus 120 ~~~ill~G~~GtGKT~la~ala~~~---~~~~~~v~~~~~~-------~~~---------~~~~~~~~~~~~~~a~~-~~ 179 (197)
+..++|.||+|+|||+++..||..+ +.++..+++.... ..+ .......+...+..+.. ..
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~~ 320 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEAR 320 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhccC
Confidence 4678999999999999999998776 4556666553221 011 12234455555555543 24
Q ss_pred CeEEEEcccCccCc
Q psy6208 180 PSIIFIDELDAIAP 193 (197)
Q Consensus 180 ~~vl~lDeid~l~~ 193 (197)
.++||||-..+...
T Consensus 321 ~DvVLIDTaGRs~k 334 (436)
T PRK11889 321 VDYILIDTAGKNYR 334 (436)
T ss_pred CCEEEEeCccccCc
Confidence 68999998877553
No 334
>PLN02674 adenylate kinase
Probab=97.79 E-value=6.7e-05 Score=59.35 Aligned_cols=38 Identities=26% Similarity=0.578 Sum_probs=29.9
Q ss_pred CCCCceEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhh
Q psy6208 118 KPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIM 157 (197)
Q Consensus 118 ~~~~~ill~G~~GtGKT~la~ala~~~~~~~~~v~~~~~~ 157 (197)
.....|+|.||||+||+++++.++..++... +++.+++
T Consensus 29 ~~~~~i~l~G~PGsGKgT~a~~La~~~~~~h--is~Gdll 66 (244)
T PLN02674 29 KPDKRLILIGPPGSGKGTQSPIIKDEYCLCH--LATGDML 66 (244)
T ss_pred ccCceEEEECCCCCCHHHHHHHHHHHcCCcE--EchhHHH
Confidence 3346799999999999999999999998544 4444444
No 335
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=97.79 E-value=2.3e-05 Score=58.45 Aligned_cols=32 Identities=34% Similarity=0.435 Sum_probs=29.5
Q ss_pred CceEEECCCCCcHHHHHHHHHHHhCCeEEEEe
Q psy6208 121 RGILLYGPPGTGKTLIARAVANETGAFFFLIN 152 (197)
Q Consensus 121 ~~ill~G~~GtGKT~la~ala~~~~~~~~~v~ 152 (197)
.+|+|.|++|+|||++.+++|+.++.+|+-.+
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D 34 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPFIDTD 34 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCCcccch
Confidence 47999999999999999999999999987765
No 336
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=97.78 E-value=9.8e-05 Score=59.02 Aligned_cols=39 Identities=23% Similarity=0.319 Sum_probs=30.4
Q ss_pred CCCCCCceEEECCCCCcHHHHHHHHHHHh---CCeEEEEech
Q psy6208 116 GVKPPRGILLYGPPGTGKTLIARAVANET---GAFFFLINGP 154 (197)
Q Consensus 116 ~~~~~~~ill~G~~GtGKT~la~ala~~~---~~~~~~v~~~ 154 (197)
|+.....++++|+||+|||+++..++... +.++++++..
T Consensus 32 Gip~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~E 73 (259)
T TIGR03878 32 GIPAYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVE 73 (259)
T ss_pred CeECCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEec
Confidence 35566778999999999999999886643 6677777754
No 337
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.78 E-value=0.0001 Score=62.45 Aligned_cols=70 Identities=24% Similarity=0.319 Sum_probs=44.4
Q ss_pred ceEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhhhccCccHHHHHHHHHHHhcCCCeEEEEcccCccCc
Q psy6208 122 GILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPSIIFIDELDAIAP 193 (197)
Q Consensus 122 ~ill~G~~GtGKT~la~ala~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~vl~lDeid~l~~ 193 (197)
.++|+||.++|||++++.+........++++..+.......- ......+..........+|||||+.+..
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~~~~~iy~~~~d~~~~~~~l--~d~~~~~~~~~~~~~~yifLDEIq~v~~ 108 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGLLEEIIYINFDDLRLDRIEL--LDLLRAYIELKEREKSYIFLDEIQNVPD 108 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhCCcceEEEEecchhcchhhH--HHHHHHHHHhhccCCceEEEecccCchh
Confidence 789999999999999988888775546666655443322111 1112222222222457899999998753
No 338
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=97.78 E-value=9.6e-05 Score=54.65 Aligned_cols=29 Identities=31% Similarity=0.251 Sum_probs=23.3
Q ss_pred ceEEECCCCCcHHHHHHHHHHHh---CCeEEE
Q psy6208 122 GILLYGPPGTGKTLIARAVANET---GAFFFL 150 (197)
Q Consensus 122 ~ill~G~~GtGKT~la~ala~~~---~~~~~~ 150 (197)
-+.+|+++|.|||++|-++|-+. |.++..
T Consensus 4 ~i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~ 35 (159)
T cd00561 4 LIQVYTGNGKGKTTAALGLALRALGHGYRVGV 35 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 47899999999999999987665 555555
No 339
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.77 E-value=9.4e-05 Score=62.26 Aligned_cols=28 Identities=25% Similarity=0.466 Sum_probs=24.2
Q ss_pred CCCCCceEEECCCCCcHHHHHHHHHHHh
Q psy6208 117 VKPPRGILLYGPPGTGKTLIARAVANET 144 (197)
Q Consensus 117 ~~~~~~ill~G~~GtGKT~la~ala~~~ 144 (197)
+..+..++|.||+|+|||++++.+++..
T Consensus 165 ig~Gq~~~IvG~~g~GKTtL~~~i~~~I 192 (415)
T TIGR00767 165 IGKGQRGLIVAPPKAGKTVLLQKIAQAI 192 (415)
T ss_pred eCCCCEEEEECCCCCChhHHHHHHHHhh
Confidence 3456669999999999999999999875
No 340
>PRK04328 hypothetical protein; Provisional
Probab=97.77 E-value=0.00014 Score=57.76 Aligned_cols=38 Identities=26% Similarity=0.390 Sum_probs=29.6
Q ss_pred CCCCCCceEEECCCCCcHHHHHHHHHHHh---CCeEEEEec
Q psy6208 116 GVKPPRGILLYGPPGTGKTLIARAVANET---GAFFFLING 153 (197)
Q Consensus 116 ~~~~~~~ill~G~~GtGKT~la~ala~~~---~~~~~~v~~ 153 (197)
|+..+..++++|+||+|||+|+..++... +.+.++++.
T Consensus 19 Gip~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ 59 (249)
T PRK04328 19 GIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVAL 59 (249)
T ss_pred CCcCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEe
Confidence 35667789999999999999999876442 667777764
No 341
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=97.76 E-value=2.1e-05 Score=71.91 Aligned_cols=74 Identities=19% Similarity=0.142 Sum_probs=42.6
Q ss_pred CCCCceEEECCCCCcHHHHHHHHHHHhC-------CeEEEEechhhhhhcc-CccHHHH-HHHHHHHhcCCCeEEEEccc
Q psy6208 118 KPPRGILLYGPPGTGKTLIARAVANETG-------AFFFLINGPEIMSKLA-GESESNL-RKAFEEADKNSPSIIFIDEL 188 (197)
Q Consensus 118 ~~~~~ill~G~~GtGKT~la~ala~~~~-------~~~~~v~~~~~~~~~~-~~~~~~~-~~~~~~a~~~~~~vl~lDei 188 (197)
....+|||.|+||||||.+|+++++... .++..+.+........ ...+..+ .+.+..| ...+++|||+
T Consensus 490 RgdihVLLvGDPGTGKSqLAr~Ih~lspR~~ytsG~~~s~vgLTa~~~~~d~~tG~~~le~GaLvlA---dgGtL~IDEi 566 (915)
T PTZ00111 490 RGIINVLLCGDPGTAKSQLLHYTHLLSPRSIYTSGKSSSSVGLTASIKFNESDNGRAMIQPGAVVLA---NGGVCCIDEL 566 (915)
T ss_pred cCCceEEEeCCCCccHHHHHHHHHHhCCccccCCCCCCccccccchhhhcccccCcccccCCcEEEc---CCCeEEecch
Confidence 4455799999999999999999998653 2333333332211000 0000000 0112222 2358999999
Q ss_pred CccCcc
Q psy6208 189 DAIAPK 194 (197)
Q Consensus 189 d~l~~~ 194 (197)
+.|.++
T Consensus 567 dkms~~ 572 (915)
T PTZ00111 567 DKCHNE 572 (915)
T ss_pred hhCCHH
Confidence 998764
No 342
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=97.76 E-value=4e-05 Score=57.50 Aligned_cols=34 Identities=35% Similarity=0.589 Sum_probs=29.9
Q ss_pred CCceEEECCCCCcHHHHHHHHHHHhCCeEEEEec
Q psy6208 120 PRGILLYGPPGTGKTLIARAVANETGAFFFLING 153 (197)
Q Consensus 120 ~~~ill~G~~GtGKT~la~ala~~~~~~~~~v~~ 153 (197)
...|+|.|++|+|||++++.++..++.+++..+.
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l~~~~vd~D~ 37 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQ 37 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHcCCcEEECCc
Confidence 4579999999999999999999999988876653
No 343
>PTZ00088 adenylate kinase 1; Provisional
Probab=97.76 E-value=3.8e-05 Score=60.27 Aligned_cols=33 Identities=27% Similarity=0.528 Sum_probs=28.4
Q ss_pred CCceEEECCCCCcHHHHHHHHHHHhCCeEEEEe
Q psy6208 120 PRGILLYGPPGTGKTLIARAVANETGAFFFLIN 152 (197)
Q Consensus 120 ~~~ill~G~~GtGKT~la~ala~~~~~~~~~v~ 152 (197)
+..|+|.||||+|||++++.+++.++.+++.++
T Consensus 6 ~mrIvl~G~PGsGK~T~a~~La~~~g~~~is~g 38 (229)
T PTZ00088 6 PLKIVLFGAPGVGKGTFAEILSKKENLKHINMG 38 (229)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCcEEECC
Confidence 345999999999999999999999987776554
No 344
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=97.75 E-value=0.00042 Score=55.82 Aligned_cols=74 Identities=24% Similarity=0.378 Sum_probs=45.2
Q ss_pred CCCceEEECCCCCcHHHHHHHHHHHh---CCeEEEEechhhh-------hhc--------c----C-ccHHHHHHHHHHH
Q psy6208 119 PPRGILLYGPPGTGKTLIARAVANET---GAFFFLINGPEIM-------SKL--------A----G-ESESNLRKAFEEA 175 (197)
Q Consensus 119 ~~~~ill~G~~GtGKT~la~ala~~~---~~~~~~v~~~~~~-------~~~--------~----~-~~~~~~~~~~~~a 175 (197)
.+..+.+.||+|+|||+++..+|..+ +..+..+++..+. ..| . + .........+..+
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l~~~ 150 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAIQKA 150 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHHHHH
Confidence 45568899999999999999998766 5667666654210 000 0 0 0112222333444
Q ss_pred hcCCCeEEEEcccCccC
Q psy6208 176 DKNSPSIIFIDELDAIA 192 (197)
Q Consensus 176 ~~~~~~vl~lDeid~l~ 192 (197)
.....++++||=...+.
T Consensus 151 ~~~~~D~ViIDT~G~~~ 167 (272)
T TIGR00064 151 KARNIDVVLIDTAGRLQ 167 (272)
T ss_pred HHCCCCEEEEeCCCCCc
Confidence 44557899999777654
No 345
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.75 E-value=9.2e-05 Score=57.96 Aligned_cols=40 Identities=20% Similarity=0.284 Sum_probs=31.1
Q ss_pred CCCCCCceEEECCCCCcHHHHHHHHHHHh---------CCeEEEEechh
Q psy6208 116 GVKPPRGILLYGPPGTGKTLIARAVANET---------GAFFFLINGPE 155 (197)
Q Consensus 116 ~~~~~~~ill~G~~GtGKT~la~ala~~~---------~~~~~~v~~~~ 155 (197)
|+....-+.|+|+||+|||+++..++... +..+++++..+
T Consensus 15 Gi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~ 63 (235)
T cd01123 15 GIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEG 63 (235)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCC
Confidence 35566678999999999999999997542 25788887644
No 346
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=97.74 E-value=3.2e-05 Score=56.81 Aligned_cols=28 Identities=39% Similarity=0.609 Sum_probs=25.9
Q ss_pred eEEECCCCCcHHHHHHHHHHHhCCeEEE
Q psy6208 123 ILLYGPPGTGKTLIARAVANETGAFFFL 150 (197)
Q Consensus 123 ill~G~~GtGKT~la~ala~~~~~~~~~ 150 (197)
|-+.|+|||||||+++.+|..+|.+++.
T Consensus 3 ItIsG~pGsG~TTva~~lAe~~gl~~vs 30 (179)
T COG1102 3 ITISGLPGSGKTTVARELAEHLGLKLVS 30 (179)
T ss_pred EEeccCCCCChhHHHHHHHHHhCCceee
Confidence 6789999999999999999999998876
No 347
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.74 E-value=9.4e-05 Score=54.90 Aligned_cols=73 Identities=16% Similarity=0.196 Sum_probs=43.3
Q ss_pred CCCCCceEEECCCCCcHHHHHHHHHHHhCC--eEEEEechhh--------hhhccC-----ccHHHHHHHHHHHhcCCCe
Q psy6208 117 VKPPRGILLYGPPGTGKTLIARAVANETGA--FFFLINGPEI--------MSKLAG-----ESESNLRKAFEEADKNSPS 181 (197)
Q Consensus 117 ~~~~~~ill~G~~GtGKT~la~ala~~~~~--~~~~v~~~~~--------~~~~~~-----~~~~~~~~~~~~a~~~~~~ 181 (197)
+.++..+.|.||+|+|||+|++.++..... --+.++...+ ....++ ......+-.+..+....|.
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~qLS~G~~qrl~laral~~~p~ 102 (163)
T cd03216 23 VRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAMVYQLSVGERQMVEIARALARNAR 102 (163)
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeEEEEecCHHHHHHHHHHHHHhcCCC
Confidence 456677999999999999999999876411 1122222111 111010 0111223345556667799
Q ss_pred EEEEcccC
Q psy6208 182 IIFIDELD 189 (197)
Q Consensus 182 vl~lDeid 189 (197)
++++||-.
T Consensus 103 illlDEP~ 110 (163)
T cd03216 103 LLILDEPT 110 (163)
T ss_pred EEEEECCC
Confidence 99999954
No 348
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.73 E-value=0.00016 Score=56.10 Aligned_cols=21 Identities=29% Similarity=0.559 Sum_probs=19.6
Q ss_pred CceEEECCCCCcHHHHHHHHH
Q psy6208 121 RGILLYGPPGTGKTLIARAVA 141 (197)
Q Consensus 121 ~~ill~G~~GtGKT~la~ala 141 (197)
+.++|+||.|+|||++++.++
T Consensus 30 ~~~~itGpNg~GKStlLk~i~ 50 (213)
T cd03281 30 SIMVITGPNSSGKSVYLKQVA 50 (213)
T ss_pred eEEEEECCCCCChHHHHHHHH
Confidence 568999999999999999997
No 349
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=97.73 E-value=4.2e-05 Score=57.03 Aligned_cols=32 Identities=31% Similarity=0.465 Sum_probs=28.5
Q ss_pred CceEEECCCCCcHHHHHHHHHHHhCCeEEEEe
Q psy6208 121 RGILLYGPPGTGKTLIARAVANETGAFFFLIN 152 (197)
Q Consensus 121 ~~ill~G~~GtGKT~la~ala~~~~~~~~~v~ 152 (197)
..++|.|.+|+|||++++.+|..++.+++..+
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~lg~~~~d~D 34 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQALGYRFVDTD 34 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEEcc
Confidence 36899999999999999999999999887654
No 350
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=97.73 E-value=8.6e-05 Score=64.54 Aligned_cols=76 Identities=30% Similarity=0.324 Sum_probs=52.4
Q ss_pred CCCCCCceEEECCCCCcHHHHHHHHHHHh---CCeEEEEechhhhhhcc------C----------------------cc
Q psy6208 116 GVKPPRGILLYGPPGTGKTLIARAVANET---GAFFFLINGPEIMSKLA------G----------------------ES 164 (197)
Q Consensus 116 ~~~~~~~ill~G~~GtGKT~la~ala~~~---~~~~~~v~~~~~~~~~~------~----------------------~~ 164 (197)
|+.+...+|+.||||+|||+|+..++... +-++++++..+-...+. | ..
T Consensus 259 G~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs~~~i~~~~~~lg~~~~~~~~~g~l~~~~~~p~~~~~ 338 (484)
T TIGR02655 259 GFFKDSIILATGATGTGKTLLVSKFLENACANKERAILFAYEESRAQLLRNAYSWGIDFEEMEQQGLLKIICAYPESAGL 338 (484)
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCHHHHHHHHHHcCCChHHHhhCCcEEEEEcccccCCh
Confidence 35667779999999999999999997755 56778877543321110 0 01
Q ss_pred HHHHHHHHHHHhcCCCeEEEEcccCcc
Q psy6208 165 ESNLRKAFEEADKNSPSIIFIDELDAI 191 (197)
Q Consensus 165 ~~~~~~~~~~a~~~~~~vl~lDeid~l 191 (197)
+..+..+.+......|++++||-+..+
T Consensus 339 ~~~~~~i~~~i~~~~~~~vvIDsi~~~ 365 (484)
T TIGR02655 339 EDHLQIIKSEIADFKPARIAIDSLSAL 365 (484)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCHHHH
Confidence 344555556666667899999988765
No 351
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.72 E-value=0.00013 Score=56.75 Aligned_cols=40 Identities=28% Similarity=0.404 Sum_probs=31.2
Q ss_pred CCCCCCceEEECCCCCcHHHHHHHHHHHh---C------CeEEEEechh
Q psy6208 116 GVKPPRGILLYGPPGTGKTLIARAVANET---G------AFFFLINGPE 155 (197)
Q Consensus 116 ~~~~~~~ill~G~~GtGKT~la~ala~~~---~------~~~~~v~~~~ 155 (197)
|+....-+.|+|+||+|||+++..++... + ..+++++...
T Consensus 15 G~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~ 63 (226)
T cd01393 15 GIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEG 63 (226)
T ss_pred CCcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCC
Confidence 35566678999999999999999997653 3 6778887643
No 352
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=97.72 E-value=7.3e-05 Score=55.09 Aligned_cols=40 Identities=35% Similarity=0.530 Sum_probs=33.5
Q ss_pred CceEEECCCCCcHHHHHHHHHHHh---CCeEEEEechhhhhhc
Q psy6208 121 RGILLYGPPGTGKTLIARAVANET---GAFFFLINGPEIMSKL 160 (197)
Q Consensus 121 ~~ill~G~~GtGKT~la~ala~~~---~~~~~~v~~~~~~~~~ 160 (197)
..|+|+|.||+|||++|+++.+.+ +.+++.++...+...+
T Consensus 3 ~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~lR~~l 45 (156)
T PF01583_consen 3 FVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGDNLRHGL 45 (156)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHHCTTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcchhhcc
Confidence 358899999999999999999887 7899999988776543
No 353
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.72 E-value=5.9e-05 Score=56.86 Aligned_cols=72 Identities=25% Similarity=0.182 Sum_probs=41.8
Q ss_pred CCCCCceEEECCCCCcHHHHHHHHHHHhCC--eEEEEechhh--hhhc--cCccHHHHHHHHHHHhcCCCeEEEEcccC
Q psy6208 117 VKPPRGILLYGPPGTGKTLIARAVANETGA--FFFLINGPEI--MSKL--AGESESNLRKAFEEADKNSPSIIFIDELD 189 (197)
Q Consensus 117 ~~~~~~ill~G~~GtGKT~la~ala~~~~~--~~~~v~~~~~--~~~~--~~~~~~~~~~~~~~a~~~~~~vl~lDeid 189 (197)
+.+...+.|.||+|+|||+|++.++..... =-+.++...+ ..+. ....+ ..+-.+..+....|.++++||--
T Consensus 22 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~q~~~LSgGq-~qrv~laral~~~p~lllLDEPt 99 (177)
T cd03222 22 VKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPVYKPQYIDLSGGE-LQRVAIAAALLRNATFYLFDEPS 99 (177)
T ss_pred ECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEEEEEEcccCCCCHHH-HHHHHHHHHHhcCCCEEEEECCc
Confidence 355667889999999999999999876411 1122221111 0010 11111 22233445555679999999964
No 354
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=97.72 E-value=0.0001 Score=55.16 Aligned_cols=32 Identities=31% Similarity=0.379 Sum_probs=27.6
Q ss_pred eEEECCCCCcHHHHHHHHHHHhCCeEEEEech
Q psy6208 123 ILLYGPPGTGKTLIARAVANETGAFFFLINGP 154 (197)
Q Consensus 123 ill~G~~GtGKT~la~ala~~~~~~~~~v~~~ 154 (197)
++++|++|+|||++|..++...+.+++++...
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~~~~~~y~at~ 33 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAELGGPVTYIATA 33 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCeEEEEcc
Confidence 68999999999999999998877778777643
No 355
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.72 E-value=0.00012 Score=61.37 Aligned_cols=74 Identities=22% Similarity=0.313 Sum_probs=44.2
Q ss_pred CCCCceEEECCCCCcHHHHHHHHHHHh----C-CeEEEEechhhh-------h---hcc------CccHHHHHHHHHHHh
Q psy6208 118 KPPRGILLYGPPGTGKTLIARAVANET----G-AFFFLINGPEIM-------S---KLA------GESESNLRKAFEEAD 176 (197)
Q Consensus 118 ~~~~~ill~G~~GtGKT~la~ala~~~----~-~~~~~v~~~~~~-------~---~~~------~~~~~~~~~~~~~a~ 176 (197)
..+..++|.||+|+||||++..++... + ..+..+++..+. . +.. ......+...+...
T Consensus 135 ~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l- 213 (374)
T PRK14722 135 ERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAEL- 213 (374)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHh-
Confidence 345678999999999999999998763 3 345555543321 0 000 11112233333332
Q ss_pred cCCCeEEEEcccCccCc
Q psy6208 177 KNSPSIIFIDELDAIAP 193 (197)
Q Consensus 177 ~~~~~vl~lDeid~l~~ 193 (197)
...++|+||..+....
T Consensus 214 -~~~DlVLIDTaG~~~~ 229 (374)
T PRK14722 214 -RNKHMVLIDTIGMSQR 229 (374)
T ss_pred -cCCCEEEEcCCCCCcc
Confidence 3468999999986643
No 356
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=97.72 E-value=7.1e-05 Score=58.45 Aligned_cols=40 Identities=28% Similarity=0.391 Sum_probs=31.5
Q ss_pred CCCCCCceEEECCCCCcHHHHHHHHHHHh---CCeEEEEechh
Q psy6208 116 GVKPPRGILLYGPPGTGKTLIARAVANET---GAFFFLINGPE 155 (197)
Q Consensus 116 ~~~~~~~ill~G~~GtGKT~la~ala~~~---~~~~~~v~~~~ 155 (197)
|+.....+++.|+||+|||+++..++... +.++++++..+
T Consensus 16 Gi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~e~ 58 (229)
T TIGR03881 16 GIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTTEE 58 (229)
T ss_pred CCcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEccC
Confidence 45677789999999999999999876432 66788887643
No 357
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=97.71 E-value=0.00011 Score=52.71 Aligned_cols=29 Identities=28% Similarity=0.373 Sum_probs=25.4
Q ss_pred CCCCceEEECCCCCcHHHHHHHHHHHhCC
Q psy6208 118 KPPRGILLYGPPGTGKTLIARAVANETGA 146 (197)
Q Consensus 118 ~~~~~ill~G~~GtGKT~la~ala~~~~~ 146 (197)
.+...++|.|+.|+|||++++.+++.++.
T Consensus 20 ~~~~~i~l~G~lGaGKTtl~~~l~~~lg~ 48 (133)
T TIGR00150 20 DFGTVVLLKGDLGAGKTTLVQGLLQGLGI 48 (133)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 45567899999999999999999999865
No 358
>PRK13946 shikimate kinase; Provisional
Probab=97.71 E-value=3.9e-05 Score=58.11 Aligned_cols=34 Identities=29% Similarity=0.446 Sum_probs=30.2
Q ss_pred CCCceEEECCCCCcHHHHHHHHHHHhCCeEEEEe
Q psy6208 119 PPRGILLYGPPGTGKTLIARAVANETGAFFFLIN 152 (197)
Q Consensus 119 ~~~~ill~G~~GtGKT~la~ala~~~~~~~~~v~ 152 (197)
....|++.|.+|+|||++++.+++.++.+++..+
T Consensus 9 ~~~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D 42 (184)
T PRK13946 9 GKRTVVLVGLMGAGKSTVGRRLATMLGLPFLDAD 42 (184)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcCCCeECcC
Confidence 3467999999999999999999999999987655
No 359
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=97.71 E-value=4.3e-05 Score=63.41 Aligned_cols=72 Identities=22% Similarity=0.344 Sum_probs=48.3
Q ss_pred CCCCceEEECCCCCcHHHHHHHHHHHhC--CeEEEEe-chhhhhh------cc-------CccHHHHHHHHHHHhcCCCe
Q psy6208 118 KPPRGILLYGPPGTGKTLIARAVANETG--AFFFLIN-GPEIMSK------LA-------GESESNLRKAFEEADKNSPS 181 (197)
Q Consensus 118 ~~~~~ill~G~~GtGKT~la~ala~~~~--~~~~~v~-~~~~~~~------~~-------~~~~~~~~~~~~~a~~~~~~ 181 (197)
....++++.|++|+|||+++++++.... ...+.+. ..++.-. +. +...-....+++.+.+..|+
T Consensus 176 ~~~~~ili~G~tGsGKTTll~al~~~i~~~~riv~iEd~~El~~~~~~~~~l~~r~~~~~g~~~~t~~~ll~~aLR~~PD 255 (340)
T TIGR03819 176 AARLAFLISGGTGSGKTTLLSALLALVAPDERIVLVEDAAELRPDHPHVVRLEARPANVEGAGAVTLTDLVRQALRMRPD 255 (340)
T ss_pred hCCCeEEEECCCCCCHHHHHHHHHccCCCCCcEEEECCcceecCCCCCeeeEEeccccccCcCccCHHHHHHHHhccCCC
Confidence 3467899999999999999999987762 2333332 1222210 00 11223456778888888999
Q ss_pred EEEEcccC
Q psy6208 182 IIFIDELD 189 (197)
Q Consensus 182 vl~lDeid 189 (197)
.|++.|+-
T Consensus 256 ~IivGEiR 263 (340)
T TIGR03819 256 RIVVGEVR 263 (340)
T ss_pred eEEEeCcC
Confidence 99999985
No 360
>PLN02200 adenylate kinase family protein
Probab=97.70 E-value=5.2e-05 Score=59.71 Aligned_cols=38 Identities=21% Similarity=0.411 Sum_probs=30.0
Q ss_pred CCCCceEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhh
Q psy6208 118 KPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIM 157 (197)
Q Consensus 118 ~~~~~ill~G~~GtGKT~la~ala~~~~~~~~~v~~~~~~ 157 (197)
..+..++|.|+||+|||++++.++..++... +++.++.
T Consensus 41 ~~~~ii~I~G~PGSGKsT~a~~La~~~g~~h--is~gdll 78 (234)
T PLN02200 41 KTPFITFVLGGPGSGKGTQCEKIVETFGFKH--LSAGDLL 78 (234)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhCCeE--EEccHHH
Confidence 3445689999999999999999999998654 5554554
No 361
>PF13245 AAA_19: Part of AAA domain
Probab=97.70 E-value=8.4e-05 Score=48.08 Aligned_cols=33 Identities=33% Similarity=0.542 Sum_probs=21.7
Q ss_pred CceEEECCCCCcHH-HHHHHHHHHh------CCeEEEEec
Q psy6208 121 RGILLYGPPGTGKT-LIARAVANET------GAFFFLING 153 (197)
Q Consensus 121 ~~ill~G~~GtGKT-~la~ala~~~------~~~~~~v~~ 153 (197)
+.+++.|||||||| ++++.++... +..++.+..
T Consensus 11 ~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~ 50 (76)
T PF13245_consen 11 PLFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAP 50 (76)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECC
Confidence 34566999999999 4555555544 445666643
No 362
>PRK14528 adenylate kinase; Provisional
Probab=97.70 E-value=4.3e-05 Score=58.02 Aligned_cols=30 Identities=27% Similarity=0.463 Sum_probs=26.5
Q ss_pred ceEEECCCCCcHHHHHHHHHHHhCCeEEEE
Q psy6208 122 GILLYGPPGTGKTLIARAVANETGAFFFLI 151 (197)
Q Consensus 122 ~ill~G~~GtGKT~la~ala~~~~~~~~~v 151 (197)
.+++.||||+|||++++.++..++.+++..
T Consensus 3 ~i~i~G~pGsGKtt~a~~la~~~~~~~is~ 32 (186)
T PRK14528 3 NIIFMGPPGAGKGTQAKILCERLSIPQIST 32 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCeeeC
Confidence 589999999999999999999998776544
No 363
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=97.70 E-value=0.00021 Score=58.63 Aligned_cols=36 Identities=33% Similarity=0.486 Sum_probs=31.8
Q ss_pred CCCCCceEEECCCCCcHHHHHHHHHHHhCCeEEEEe
Q psy6208 117 VKPPRGILLYGPPGTGKTLIARAVANETGAFFFLIN 152 (197)
Q Consensus 117 ~~~~~~ill~G~~GtGKT~la~ala~~~~~~~~~v~ 152 (197)
..+...|+|.|.+|+|||++++.++..++.+++.++
T Consensus 130 ~~~~~~I~l~G~~GsGKStvg~~La~~Lg~~~id~D 165 (309)
T PRK08154 130 AARRRRIALIGLRGAGKSTLGRMLAARLGVPFVELN 165 (309)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEeHH
Confidence 456778999999999999999999999999988544
No 364
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=97.69 E-value=7.8e-05 Score=61.51 Aligned_cols=28 Identities=36% Similarity=0.453 Sum_probs=24.7
Q ss_pred CCCCceEEECCCCCcHHHHHHHHHHHhC
Q psy6208 118 KPPRGILLYGPPGTGKTLIARAVANETG 145 (197)
Q Consensus 118 ~~~~~ill~G~~GtGKT~la~ala~~~~ 145 (197)
+.+..+||+||+|+|||++|+.+|+.+.
T Consensus 19 r~~hA~Lf~G~~G~GK~~la~~~a~~ll 46 (325)
T PRK08699 19 RRPNAWLFAGKKGIGKTAFARFAAQALL 46 (325)
T ss_pred CcceEEEeECCCCCCHHHHHHHHHHHHc
Confidence 4566899999999999999999998874
No 365
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.69 E-value=0.00013 Score=59.94 Aligned_cols=28 Identities=36% Similarity=0.587 Sum_probs=24.4
Q ss_pred CCCCceEEECCCCCcHHHHHHHHHHHhC
Q psy6208 118 KPPRGILLYGPPGTGKTLIARAVANETG 145 (197)
Q Consensus 118 ~~~~~ill~G~~GtGKT~la~ala~~~~ 145 (197)
.-+..+||+||+|+||+++|.++|+.+-
T Consensus 24 rl~HA~Lf~Gp~G~GK~~lA~~lA~~Ll 51 (319)
T PRK08769 24 RLGHGLLICGPEGLGKRAVALALAEHVL 51 (319)
T ss_pred CcceeEeeECCCCCCHHHHHHHHHHHHh
Confidence 4466799999999999999999998773
No 366
>PF13479 AAA_24: AAA domain
Probab=97.69 E-value=0.0001 Score=57.21 Aligned_cols=67 Identities=31% Similarity=0.478 Sum_probs=39.1
Q ss_pred CCceEEECCCCCcHHHHHHHHHHHhCCeEEEEechhh---hhhc------cCccHHHHHHHHHHH--hcCCCeEEEEccc
Q psy6208 120 PRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEI---MSKL------AGESESNLRKAFEEA--DKNSPSIIFIDEL 188 (197)
Q Consensus 120 ~~~ill~G~~GtGKT~la~ala~~~~~~~~~v~~~~~---~~~~------~~~~~~~~~~~~~~a--~~~~~~vl~lDei 188 (197)
+-.++|||+||+|||+++..+ + ..+++++..= ...+ .-.+-..+.+.+... ......+|+||-+
T Consensus 3 ~~~~lIyG~~G~GKTt~a~~~----~-k~l~id~E~g~~~~~~~~~~~~i~i~s~~~~~~~~~~l~~~~~~y~tiVIDsi 77 (213)
T PF13479_consen 3 PIKILIYGPPGSGKTTLAASL----P-KPLFIDTENGSDSLKFLDDGDVIPITSWEDFLEALDELEEDEADYDTIVIDSI 77 (213)
T ss_pred ceEEEEECCCCCCHHHHHHhC----C-CeEEEEeCCCccchhhhcCCCeeCcCCHHHHHHHHHHHHhccCCCCEEEEECH
Confidence 446899999999999999988 2 2334443221 1010 001223344444332 2345689999988
Q ss_pred Ccc
Q psy6208 189 DAI 191 (197)
Q Consensus 189 d~l 191 (197)
+.+
T Consensus 78 s~~ 80 (213)
T PF13479_consen 78 SWL 80 (213)
T ss_pred HHH
Confidence 765
No 367
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=97.68 E-value=4.8e-05 Score=57.29 Aligned_cols=29 Identities=24% Similarity=0.406 Sum_probs=25.1
Q ss_pred ceEEECCCCCcHHHHHHHHHHHhCCeEEE
Q psy6208 122 GILLYGPPGTGKTLIARAVANETGAFFFL 150 (197)
Q Consensus 122 ~ill~G~~GtGKT~la~ala~~~~~~~~~ 150 (197)
-+++.|+||+|||++++.++..++...+.
T Consensus 5 ii~i~G~~GsGKsTl~~~l~~~~g~~~~~ 33 (188)
T TIGR01360 5 IIFIVGGPGSGKGTQCEKIVEKYGFTHLS 33 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEe
Confidence 58899999999999999999998765443
No 368
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.68 E-value=8.6e-05 Score=47.02 Aligned_cols=30 Identities=27% Similarity=0.564 Sum_probs=23.7
Q ss_pred eEEECCCCCcHHHHHHHHHHHh-CCeEEEEe
Q psy6208 123 ILLYGPPGTGKTLIARAVANET-GAFFFLIN 152 (197)
Q Consensus 123 ill~G~~GtGKT~la~ala~~~-~~~~~~v~ 152 (197)
+.+.|++|+|||++++++++.+ +.++..++
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l~~~~~~~i~ 32 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQLGGRSVVVLD 32 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHhcCCCEEEEe
Confidence 6789999999999999999986 23444443
No 369
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=97.68 E-value=4e-05 Score=62.79 Aligned_cols=71 Identities=24% Similarity=0.358 Sum_probs=50.4
Q ss_pred CCCCceEEECCCCCcHHHHHHHHHHHhC--CeEEEEe-chhhh-------------hhccCccHHHHHHHHHHHhcCCCe
Q psy6208 118 KPPRGILLYGPPGTGKTLIARAVANETG--AFFFLIN-GPEIM-------------SKLAGESESNLRKAFEEADKNSPS 181 (197)
Q Consensus 118 ~~~~~ill~G~~GtGKT~la~ala~~~~--~~~~~v~-~~~~~-------------~~~~~~~~~~~~~~~~~a~~~~~~ 181 (197)
....++|+.|.+|+|||||+.++..... -.++.+. ..++. ....|..+-....+.+.+.+..|+
T Consensus 171 ~~r~NILisGGTGSGKTTlLNal~~~i~~~eRvItiEDtaELql~~ph~vrL~TR~~n~Eg~gevtm~dLvkn~LRmRPD 250 (355)
T COG4962 171 GIRCNILISGGTGSGKTTLLNALSGFIDSDERVITIEDTAELQLAHPHVVRLETRPPNVEGTGEVTMRDLVKNALRMRPD 250 (355)
T ss_pred hhceeEEEeCCCCCCHHHHHHHHHhcCCCcccEEEEeehhhhccCCCceEEEeecCCCCCCcceEEHHHHHHHHhhcCcc
Confidence 3457899999999999999999988762 2444432 22321 111233455678889999999999
Q ss_pred EEEEccc
Q psy6208 182 IIFIDEL 188 (197)
Q Consensus 182 vl~lDei 188 (197)
-+++-|+
T Consensus 251 RIiVGEV 257 (355)
T COG4962 251 RIIVGEV 257 (355)
T ss_pred ceEEEEe
Confidence 9999876
No 370
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=97.67 E-value=3.5e-05 Score=54.16 Aligned_cols=22 Identities=45% Similarity=0.674 Sum_probs=20.7
Q ss_pred eEEECCCCCcHHHHHHHHHHHh
Q psy6208 123 ILLYGPPGTGKTLIARAVANET 144 (197)
Q Consensus 123 ill~G~~GtGKT~la~ala~~~ 144 (197)
|+|.|+||+|||++++.|++.+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999986
No 371
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=97.67 E-value=4.5e-05 Score=58.94 Aligned_cols=29 Identities=34% Similarity=0.621 Sum_probs=25.6
Q ss_pred eEEECCCCCcHHHHHHHHHHHhCCeEEEE
Q psy6208 123 ILLYGPPGTGKTLIARAVANETGAFFFLI 151 (197)
Q Consensus 123 ill~G~~GtGKT~la~ala~~~~~~~~~v 151 (197)
|+|.||||+|||++++.++...+..++..
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g~~~is~ 30 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYGLPHIST 30 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeeeh
Confidence 78999999999999999999988766543
No 372
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=97.67 E-value=3.5e-05 Score=57.19 Aligned_cols=30 Identities=33% Similarity=0.510 Sum_probs=26.7
Q ss_pred ceEEECCCCCcHHHHHHHHHHHhCCeEEEEe
Q psy6208 122 GILLYGPPGTGKTLIARAVANETGAFFFLIN 152 (197)
Q Consensus 122 ~ill~G~~GtGKT~la~ala~~~~~~~~~v~ 152 (197)
.|+++|.||+|||++++.++ .++..++.++
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~-~lg~~~i~l~ 31 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR-ELGYKVIELN 31 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH-HhCCceeeHH
Confidence 47899999999999999999 8888877665
No 373
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.67 E-value=0.00029 Score=52.60 Aligned_cols=32 Identities=38% Similarity=0.441 Sum_probs=26.7
Q ss_pred eEEECCCCCcHHHHHHHHHHHh---CCeEEEEech
Q psy6208 123 ILLYGPPGTGKTLIARAVANET---GAFFFLINGP 154 (197)
Q Consensus 123 ill~G~~GtGKT~la~ala~~~---~~~~~~v~~~ 154 (197)
+++.|+||+|||+++..++..+ +..+..+++.
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D 37 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAAD 37 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcC
Confidence 6899999999999999998765 5677777764
No 374
>PRK02496 adk adenylate kinase; Provisional
Probab=97.67 E-value=4.7e-05 Score=57.49 Aligned_cols=30 Identities=27% Similarity=0.423 Sum_probs=26.2
Q ss_pred ceEEECCCCCcHHHHHHHHHHHhCCeEEEE
Q psy6208 122 GILLYGPPGTGKTLIARAVANETGAFFFLI 151 (197)
Q Consensus 122 ~ill~G~~GtGKT~la~ala~~~~~~~~~v 151 (197)
.++|.|+||+|||++++.++..++.+.+..
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~~~~~i~~ 32 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHLHIPHIST 32 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEEh
Confidence 489999999999999999999998766544
No 375
>PRK06696 uridine kinase; Validated
Probab=97.66 E-value=0.00016 Score=56.37 Aligned_cols=37 Identities=24% Similarity=0.293 Sum_probs=29.6
Q ss_pred CCCceEEECCCCCcHHHHHHHHHHHh---CCeEEEEechh
Q psy6208 119 PPRGILLYGPPGTGKTLIARAVANET---GAFFFLINGPE 155 (197)
Q Consensus 119 ~~~~ill~G~~GtGKT~la~ala~~~---~~~~~~v~~~~ 155 (197)
.+.-|.|.|++|+||||+|+.|+..+ +.+++.++..+
T Consensus 21 ~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Dd 60 (223)
T PRK06696 21 RPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDD 60 (223)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecccc
Confidence 35568899999999999999999988 56676655433
No 376
>PRK14527 adenylate kinase; Provisional
Probab=97.66 E-value=4.4e-05 Score=58.10 Aligned_cols=33 Identities=30% Similarity=0.491 Sum_probs=27.7
Q ss_pred CCCCceEEECCCCCcHHHHHHHHHHHhCCeEEE
Q psy6208 118 KPPRGILLYGPPGTGKTLIARAVANETGAFFFL 150 (197)
Q Consensus 118 ~~~~~ill~G~~GtGKT~la~ala~~~~~~~~~ 150 (197)
+.+.-+++.||||+|||++++.+++.++...+.
T Consensus 4 ~~~~~i~i~G~pGsGKsT~a~~La~~~~~~~is 36 (191)
T PRK14527 4 TKNKVVIFLGPPGAGKGTQAERLAQELGLKKLS 36 (191)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhCCCCCC
Confidence 345679999999999999999999998765544
No 377
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=97.66 E-value=3.2e-05 Score=60.32 Aligned_cols=22 Identities=27% Similarity=0.668 Sum_probs=20.0
Q ss_pred eEEECCCCCcHHHHHHHHHHHh
Q psy6208 123 ILLYGPPGTGKTLIARAVANET 144 (197)
Q Consensus 123 ill~G~~GtGKT~la~ala~~~ 144 (197)
++++|+||+|||++++.+....
T Consensus 1 ~vv~G~pGsGKSt~i~~~~~~~ 22 (234)
T PF01443_consen 1 IVVHGVPGSGKSTLIKKLLKDR 22 (234)
T ss_pred CEEEcCCCCCHHHHHHHHHHhc
Confidence 5799999999999999998874
No 378
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=97.64 E-value=0.00023 Score=58.53 Aligned_cols=27 Identities=19% Similarity=0.320 Sum_probs=24.3
Q ss_pred CCCCceEEECCCCCcHHHHHHHHHHHh
Q psy6208 118 KPPRGILLYGPPGTGKTLIARAVANET 144 (197)
Q Consensus 118 ~~~~~ill~G~~GtGKT~la~ala~~~ 144 (197)
+-+..+||+||.|+||+.+|+++|+.+
T Consensus 23 rl~hA~L~~G~~G~Gk~~lA~~~a~~l 49 (319)
T PRK06090 23 RIPGALLLQSDEGLGVESLVELFSRAL 49 (319)
T ss_pred CcceeEeeECCCCCCHHHHHHHHHHHH
Confidence 456689999999999999999999877
No 379
>PRK00279 adk adenylate kinase; Reviewed
Probab=97.63 E-value=6e-05 Score=58.47 Aligned_cols=30 Identities=33% Similarity=0.576 Sum_probs=26.2
Q ss_pred ceEEECCCCCcHHHHHHHHHHHhCCeEEEE
Q psy6208 122 GILLYGPPGTGKTLIARAVANETGAFFFLI 151 (197)
Q Consensus 122 ~ill~G~~GtGKT~la~ala~~~~~~~~~v 151 (197)
.|+++|+||+|||++++.+|..++...+.+
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~~~~~is~ 31 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKYGIPHIST 31 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEEC
Confidence 389999999999999999999998766553
No 380
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=97.63 E-value=0.00026 Score=54.32 Aligned_cols=23 Identities=30% Similarity=0.479 Sum_probs=20.5
Q ss_pred CCCceEEECCCCCcHHHHHHHHH
Q psy6208 119 PPRGILLYGPPGTGKTLIARAVA 141 (197)
Q Consensus 119 ~~~~ill~G~~GtGKT~la~ala 141 (197)
.+..++|+||.|+|||++++.++
T Consensus 28 ~~~~~~l~G~Ng~GKStll~~i~ 50 (202)
T cd03243 28 SGRLLLITGPNMGGKSTYLRSIG 50 (202)
T ss_pred CCeEEEEECCCCCccHHHHHHHH
Confidence 34569999999999999999998
No 381
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=97.63 E-value=0.00013 Score=54.65 Aligned_cols=33 Identities=27% Similarity=0.370 Sum_probs=28.6
Q ss_pred ceEEECCCCCcHHHHHHHHHHHhCCeEEEEech
Q psy6208 122 GILLYGPPGTGKTLIARAVANETGAFFFLINGP 154 (197)
Q Consensus 122 ~ill~G~~GtGKT~la~ala~~~~~~~~~v~~~ 154 (197)
.+++.|+||+|||++|..++...+.+++++...
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~~~~~iat~ 35 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGLQVLYIATA 35 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCCCcEeCcCC
Confidence 489999999999999999999988777777653
No 382
>COG1485 Predicted ATPase [General function prediction only]
Probab=97.62 E-value=0.00018 Score=59.13 Aligned_cols=29 Identities=31% Similarity=0.562 Sum_probs=25.6
Q ss_pred CCCCceEEECCCCCcHHHHHHHHHHHhCC
Q psy6208 118 KPPRGILLYGPPGTGKTLIARAVANETGA 146 (197)
Q Consensus 118 ~~~~~ill~G~~GtGKT~la~ala~~~~~ 146 (197)
..++|+++||+.|.|||+|+..+...+..
T Consensus 63 ~~~~GlYl~GgVGrGKT~LMD~Fy~~lp~ 91 (367)
T COG1485 63 GPVRGLYLWGGVGRGKTMLMDLFYESLPG 91 (367)
T ss_pred CCCceEEEECCCCccHHHHHHHHHhhCCc
Confidence 46789999999999999999999887743
No 383
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=97.62 E-value=0.00026 Score=54.21 Aligned_cols=43 Identities=30% Similarity=0.500 Sum_probs=32.1
Q ss_pred CCCCceEEECCCCCcHHHHHHHHHHHh-CCeEEEEechhhhhhc
Q psy6208 118 KPPRGILLYGPPGTGKTLIARAVANET-GAFFFLINGPEIMSKL 160 (197)
Q Consensus 118 ~~~~~ill~G~~GtGKT~la~ala~~~-~~~~~~v~~~~~~~~~ 160 (197)
..|.-+++.|+||+|||+++..+...+ +..++.++..++....
T Consensus 13 ~~P~~~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~r~~~ 56 (199)
T PF06414_consen 13 EKPTLIIIAGQPGSGKSTLARQLLEEFGGGGIVVIDADEFRQFH 56 (199)
T ss_dssp SS-EEEEEES-TTSTTHHHHHHHHHHT-TT-SEEE-GGGGGGGS
T ss_pred cCCEEEEEeCCCCCCHHHHHHHhhhhccCCCeEEEehHHHHHhc
Confidence 456678999999999999999999888 6778888887765443
No 384
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=97.62 E-value=0.00034 Score=53.01 Aligned_cols=19 Identities=32% Similarity=0.562 Sum_probs=18.0
Q ss_pred eEEECCCCCcHHHHHHHHH
Q psy6208 123 ILLYGPPGTGKTLIARAVA 141 (197)
Q Consensus 123 ill~G~~GtGKT~la~ala 141 (197)
++|+||.|+|||++++.++
T Consensus 2 ~~ltG~N~~GKst~l~~i~ 20 (185)
T smart00534 2 VIITGPNMGGKSTYLRQVG 20 (185)
T ss_pred EEEECCCCCcHHHHHHHHH
Confidence 6899999999999999997
No 385
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=97.61 E-value=0.0003 Score=64.22 Aligned_cols=74 Identities=16% Similarity=0.140 Sum_probs=43.4
Q ss_pred CCceEEECCCCCcHHHHHHHHHHHh---CCeEEEEechhh----hhhccCccHHHHHHHHHHHh-----cCCCeEEEEcc
Q psy6208 120 PRGILLYGPPGTGKTLIARAVANET---GAFFFLINGPEI----MSKLAGESESNLRKAFEEAD-----KNSPSIIFIDE 187 (197)
Q Consensus 120 ~~~ill~G~~GtGKT~la~ala~~~---~~~~~~v~~~~~----~~~~~~~~~~~~~~~~~~a~-----~~~~~vl~lDe 187 (197)
..-.+|.|++|||||++++++...+ +..++.+..... +....+.....+..+..... -...++|++||
T Consensus 368 ~~~~il~G~aGTGKTtll~~i~~~~~~~g~~V~~~ApTg~Aa~~L~~~~g~~a~Ti~~~~~~~~~~~~~~~~~~llIvDE 447 (744)
T TIGR02768 368 GDIAVVVGRAGTGKSTMLKAAREAWEAAGYRVIGAALSGKAAEGLQAESGIESRTLASLEYAWANGRDLLSDKDVLVIDE 447 (744)
T ss_pred CCEEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEeCcHHHHHHHHhccCCceeeHHHHHhhhccCcccCCCCcEEEEEC
Confidence 3457899999999999999987554 666666543222 22222222222333221111 12457999999
Q ss_pred cCccCc
Q psy6208 188 LDAIAP 193 (197)
Q Consensus 188 id~l~~ 193 (197)
+..+..
T Consensus 448 asMv~~ 453 (744)
T TIGR02768 448 AGMVGS 453 (744)
T ss_pred cccCCH
Confidence 887653
No 386
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=97.61 E-value=0.00023 Score=57.81 Aligned_cols=34 Identities=35% Similarity=0.474 Sum_probs=26.7
Q ss_pred ceEEECCCCCcHHHHHHHHHHHh-CCeEEEEechhhh
Q psy6208 122 GILLYGPPGTGKTLIARAVANET-GAFFFLINGPEIM 157 (197)
Q Consensus 122 ~ill~G~~GtGKT~la~ala~~~-~~~~~~v~~~~~~ 157 (197)
-+++.|+||||||++|+.+++.+ +. ..++...+.
T Consensus 4 liil~G~pGSGKSTla~~L~~~~~~~--~~l~~D~~r 38 (300)
T PHA02530 4 IILTVGVPGSGKSTWAREFAAKNPKA--VNVNRDDLR 38 (300)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHCCCC--EEEeccHHH
Confidence 57899999999999999999998 54 444544443
No 387
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=97.61 E-value=7.1e-05 Score=57.86 Aligned_cols=23 Identities=39% Similarity=0.624 Sum_probs=16.8
Q ss_pred ceEEECCCCCcHHHHHHHHHHHh
Q psy6208 122 GILLYGPPGTGKTLIARAVANET 144 (197)
Q Consensus 122 ~ill~G~~GtGKT~la~ala~~~ 144 (197)
-.+++||||||||+++..+...+
T Consensus 19 ~~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 19 ITLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp -EEEE-STTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCChHHHHHHHHHHh
Confidence 38999999999998766665544
No 388
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=97.61 E-value=0.00025 Score=58.62 Aligned_cols=53 Identities=21% Similarity=0.386 Sum_probs=41.1
Q ss_pred ccccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHhC
Q psy6208 86 DDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANETG 145 (197)
Q Consensus 86 ~~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~~ 145 (197)
+++.|.++.+.++.+++...-. .++ ...+-++|.||+|+|||++++.+.+-+.
T Consensus 61 ~~~~G~~~~i~~lV~~fk~AA~------g~~-~~krIl~L~GPvg~GKSsl~~~Lk~~le 113 (358)
T PF08298_consen 61 DEFYGMEETIERLVNYFKSAAQ------GLE-ERKRILLLLGPVGGGKSSLAELLKRGLE 113 (358)
T ss_pred ccccCcHHHHHHHHHHHHHHHh------ccC-ccceEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3799999999999988775422 121 3345588999999999999999988773
No 389
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.61 E-value=0.00093 Score=56.77 Aligned_cols=72 Identities=19% Similarity=0.261 Sum_probs=42.8
Q ss_pred CCceEEECCCCCcHHHHHHHHHHHh----CCeEEEEechhhhh-------hc------cCccHHHHHHHHHHHhcCCCeE
Q psy6208 120 PRGILLYGPPGTGKTLIARAVANET----GAFFFLINGPEIMS-------KL------AGESESNLRKAFEEADKNSPSI 182 (197)
Q Consensus 120 ~~~ill~G~~GtGKT~la~ala~~~----~~~~~~v~~~~~~~-------~~------~~~~~~~~~~~~~~a~~~~~~v 182 (197)
+..++|.||+|+|||+++..+|... +..+..+++..... .+ ..........+.+.+.....++
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D~ 302 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSEL 302 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCCE
Confidence 3458899999999999999998654 45566665543211 00 0011112333333344445789
Q ss_pred EEEcccCcc
Q psy6208 183 IFIDELDAI 191 (197)
Q Consensus 183 l~lDeid~l 191 (197)
|+||=....
T Consensus 303 VLIDTaGr~ 311 (432)
T PRK12724 303 ILIDTAGYS 311 (432)
T ss_pred EEEeCCCCC
Confidence 999965544
No 390
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=97.60 E-value=0.001 Score=54.82 Aligned_cols=75 Identities=24% Similarity=0.310 Sum_probs=45.7
Q ss_pred CCCceEEECCCCCcHHHHHHHHHHHh---CCeEEEEechhhh-------hh--------cc----Ccc-HHHHHHHHHHH
Q psy6208 119 PPRGILLYGPPGTGKTLIARAVANET---GAFFFLINGPEIM-------SK--------LA----GES-ESNLRKAFEEA 175 (197)
Q Consensus 119 ~~~~ill~G~~GtGKT~la~ala~~~---~~~~~~v~~~~~~-------~~--------~~----~~~-~~~~~~~~~~a 175 (197)
.+.-++|.||+|+|||+++..+|..+ +..+..+++.... .. +. +.. .......+..+
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~~ 192 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQAA 192 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 35568899999999999999998776 5566666553211 00 00 001 11122333344
Q ss_pred hcCCCeEEEEcccCccCc
Q psy6208 176 DKNSPSIIFIDELDAIAP 193 (197)
Q Consensus 176 ~~~~~~vl~lDeid~l~~ 193 (197)
.....++|+||=...+..
T Consensus 193 ~~~~~D~ViIDTaGr~~~ 210 (318)
T PRK10416 193 KARGIDVLIIDTAGRLHN 210 (318)
T ss_pred HhCCCCEEEEeCCCCCcC
Confidence 445678999998777653
No 391
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.59 E-value=0.00024 Score=52.20 Aligned_cols=73 Identities=27% Similarity=0.408 Sum_probs=43.1
Q ss_pred CCCCCceEEECCCCCcHHHHHHHHHHHhCC--eEEEEechhhhh-------h---c---cCccHHHHHHHHHHHhcCCCe
Q psy6208 117 VKPPRGILLYGPPGTGKTLIARAVANETGA--FFFLINGPEIMS-------K---L---AGESESNLRKAFEEADKNSPS 181 (197)
Q Consensus 117 ~~~~~~ill~G~~GtGKT~la~ala~~~~~--~~~~v~~~~~~~-------~---~---~~~~~~~~~~~~~~a~~~~~~ 181 (197)
+.+...+.|.|++|+|||+|+++++..... --++++...+.. . + ....+ ..+-.+..+....|.
T Consensus 22 i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~qlS~G~-~~r~~l~~~l~~~~~ 100 (157)
T cd00267 22 LKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVPQLSGGQ-RQRVALARALLLNPD 100 (157)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEEeeCCHHH-HHHHHHHHHHhcCCC
Confidence 355667899999999999999999876532 122333221110 0 0 11112 222224444455689
Q ss_pred EEEEcccCc
Q psy6208 182 IIFIDELDA 190 (197)
Q Consensus 182 vl~lDeid~ 190 (197)
++++||...
T Consensus 101 i~ilDEp~~ 109 (157)
T cd00267 101 LLLLDEPTS 109 (157)
T ss_pred EEEEeCCCc
Confidence 999999753
No 392
>PRK04040 adenylate kinase; Provisional
Probab=97.59 E-value=8.6e-05 Score=56.53 Aligned_cols=31 Identities=19% Similarity=0.318 Sum_probs=25.8
Q ss_pred CceEEECCCCCcHHHHHHHHHHHh--CCeEEEE
Q psy6208 121 RGILLYGPPGTGKTLIARAVANET--GAFFFLI 151 (197)
Q Consensus 121 ~~ill~G~~GtGKT~la~ala~~~--~~~~~~v 151 (197)
..++++|+||+|||++++.+++.+ +..++..
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~~~~ 35 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKLKEDYKIVNF 35 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHhccCCeEEec
Confidence 458999999999999999999998 5555433
No 393
>PRK08233 hypothetical protein; Provisional
Probab=97.59 E-value=9e-05 Score=55.52 Aligned_cols=31 Identities=16% Similarity=0.224 Sum_probs=25.3
Q ss_pred ceEEECCCCCcHHHHHHHHHHHhC-CeEEEEe
Q psy6208 122 GILLYGPPGTGKTLIARAVANETG-AFFFLIN 152 (197)
Q Consensus 122 ~ill~G~~GtGKT~la~ala~~~~-~~~~~v~ 152 (197)
-|.|.|+||+||||+++.++..++ .+++..+
T Consensus 5 iI~I~G~~GsGKtTla~~L~~~l~~~~~~~~d 36 (182)
T PRK08233 5 IITIAAVSGGGKTTLTERLTHKLKNSKALYFD 36 (182)
T ss_pred EEEEECCCCCCHHHHHHHHHhhCCCCceEEEC
Confidence 478899999999999999999885 4455444
No 394
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=97.58 E-value=0.00036 Score=53.49 Aligned_cols=21 Identities=29% Similarity=0.596 Sum_probs=19.4
Q ss_pred CceEEECCCCCcHHHHHHHHH
Q psy6208 121 RGILLYGPPGTGKTLIARAVA 141 (197)
Q Consensus 121 ~~ill~G~~GtGKT~la~ala 141 (197)
+.++|+||.|+|||++++.++
T Consensus 29 ~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 29 RVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred eEEEEECCCCCChHHHHHHHH
Confidence 359999999999999999987
No 395
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=97.58 E-value=0.00023 Score=59.63 Aligned_cols=27 Identities=26% Similarity=0.552 Sum_probs=24.1
Q ss_pred CCCCceEEECCCCCcHHHHHHHHHHHh
Q psy6208 118 KPPRGILLYGPPGTGKTLIARAVANET 144 (197)
Q Consensus 118 ~~~~~ill~G~~GtGKT~la~ala~~~ 144 (197)
..+..+++.|+.|||||++.+++.+.+
T Consensus 20 ~~~~~~fv~G~~GtGKs~l~~~i~~~~ 46 (364)
T PF05970_consen 20 EEGLNFFVTGPAGTGKSFLIKAIIDYL 46 (364)
T ss_pred cCCcEEEEEcCCCCChhHHHHHHHHHh
Confidence 456789999999999999999998877
No 396
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=97.58 E-value=0.00026 Score=58.48 Aligned_cols=39 Identities=15% Similarity=0.153 Sum_probs=32.0
Q ss_pred CCceEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhh
Q psy6208 120 PRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMS 158 (197)
Q Consensus 120 ~~~ill~G~~GtGKT~la~ala~~~~~~~~~v~~~~~~~ 158 (197)
...++|.|++|+|||+|++.++...+.+++.--..+...
T Consensus 162 ~~~~~~~G~~~~gkstl~~~l~~~~~~~~v~E~~R~~~~ 200 (325)
T TIGR01526 162 VKTVAILGGESTGKSTLVNKLAAVFNTTSAWEYAREYVE 200 (325)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCCCEEeehhHHHHH
Confidence 447999999999999999999999988886655554443
No 397
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=97.58 E-value=0.0004 Score=63.15 Aligned_cols=73 Identities=23% Similarity=0.377 Sum_probs=42.1
Q ss_pred CCceEEECCCCCcHHHHHHHHHHHh---C--CeEEEEech----hhhhhccCccHHHHHHHHHHH---------h-cCCC
Q psy6208 120 PRGILLYGPPGTGKTLIARAVANET---G--AFFFLINGP----EIMSKLAGESESNLRKAFEEA---------D-KNSP 180 (197)
Q Consensus 120 ~~~ill~G~~GtGKT~la~ala~~~---~--~~~~~v~~~----~~~~~~~~~~~~~~~~~~~~a---------~-~~~~ 180 (197)
.+.++|.|+||||||++++++...+ + .+++.+... .-+.+..+.....+..++... . ....
T Consensus 338 ~~~~iitGgpGTGKTt~l~~i~~~~~~~~~~~~v~l~ApTg~AA~~L~e~~g~~a~Tih~lL~~~~~~~~~~~~~~~~~~ 417 (720)
T TIGR01448 338 HKVVILTGGPGTGKTTITRAIIELAEELGGLLPVGLAAPTGRAAKRLGEVTGLTASTIHRLLGYGPDTFRHNHLEDPIDC 417 (720)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCceEEEEeCchHHHHHHHHhcCCccccHHHHhhccCCccchhhhhccccC
Confidence 3468999999999999999987655 3 333333211 112222222223333333211 0 1235
Q ss_pred eEEEEcccCccC
Q psy6208 181 SIIFIDELDAIA 192 (197)
Q Consensus 181 ~vl~lDeid~l~ 192 (197)
++|++||+..+.
T Consensus 418 ~llIvDEaSMvd 429 (720)
T TIGR01448 418 DLLIVDESSMMD 429 (720)
T ss_pred CEEEEeccccCC
Confidence 799999998765
No 398
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=97.57 E-value=0.00012 Score=53.55 Aligned_cols=35 Identities=34% Similarity=0.636 Sum_probs=28.7
Q ss_pred eEEECCCCCcHHHHHHHHHHHh---CCeEEEEechhhh
Q psy6208 123 ILLYGPPGTGKTLIARAVANET---GAFFFLINGPEIM 157 (197)
Q Consensus 123 ill~G~~GtGKT~la~ala~~~---~~~~~~v~~~~~~ 157 (197)
++|.|+||+|||++++.++..+ +...+.++...+.
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~~r 39 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNVR 39 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHHHH
Confidence 6899999999999999999988 6667777655443
No 399
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.57 E-value=0.00035 Score=52.60 Aligned_cols=26 Identities=15% Similarity=0.236 Sum_probs=22.1
Q ss_pred CCCCCceEEECCCCCcHHHHHHHHHH
Q psy6208 117 VKPPRGILLYGPPGTGKTLIARAVAN 142 (197)
Q Consensus 117 ~~~~~~ill~G~~GtGKT~la~ala~ 142 (197)
+.++.-+.|.||+|+|||+|.+++..
T Consensus 18 i~~G~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 18 IPLNVLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhh
Confidence 45566789999999999999999863
No 400
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=97.55 E-value=0.00013 Score=58.15 Aligned_cols=40 Identities=35% Similarity=0.565 Sum_probs=32.6
Q ss_pred CCCCCCceEEECCCCCcHHHHHHHHHHHh---CCeEEEEechh
Q psy6208 116 GVKPPRGILLYGPPGTGKTLIARAVANET---GAFFFLINGPE 155 (197)
Q Consensus 116 ~~~~~~~ill~G~~GtGKT~la~ala~~~---~~~~~~v~~~~ 155 (197)
|+.....++++|+||||||.++..++... |.++++++..+
T Consensus 19 G~p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~e 61 (260)
T COG0467 19 GLPRGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVSTEE 61 (260)
T ss_pred CCcCCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEEecC
Confidence 35677789999999999999999887655 67888887543
No 401
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.55 E-value=0.0007 Score=56.81 Aligned_cols=76 Identities=22% Similarity=0.190 Sum_probs=48.1
Q ss_pred CCCCceEEECCCCCcHHHHHHHHHHHh---CCeEEEEechhhhh----h------------ccCccHHHHHHHHHHHhc-
Q psy6208 118 KPPRGILLYGPPGTGKTLIARAVANET---GAFFFLINGPEIMS----K------------LAGESESNLRKAFEEADK- 177 (197)
Q Consensus 118 ~~~~~ill~G~~GtGKT~la~ala~~~---~~~~~~v~~~~~~~----~------------~~~~~~~~~~~~~~~a~~- 177 (197)
..+..++|.||+|+|||+++..+|..+ +.++..+++..... . +.......+...++.+..
T Consensus 204 ~~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~~~ 283 (407)
T PRK12726 204 SNHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMTYV 283 (407)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHHhc
Confidence 345668999999999999999998765 55666666532210 0 112233445555554432
Q ss_pred CCCeEEEEcccCccCc
Q psy6208 178 NSPSIIFIDELDAIAP 193 (197)
Q Consensus 178 ~~~~vl~lDeid~l~~ 193 (197)
...++|+||=......
T Consensus 284 ~~~D~VLIDTAGr~~~ 299 (407)
T PRK12726 284 NCVDHILIDTVGRNYL 299 (407)
T ss_pred CCCCEEEEECCCCCcc
Confidence 3468999998877543
No 402
>PF14516 AAA_35: AAA-like domain
Probab=97.55 E-value=0.00084 Score=55.59 Aligned_cols=39 Identities=21% Similarity=0.238 Sum_probs=31.8
Q ss_pred CCCCceEEECCCCCcHHHHHHHHHHHh---CCeEEEEechhh
Q psy6208 118 KPPRGILLYGPPGTGKTLIARAVANET---GAFFFLINGPEI 156 (197)
Q Consensus 118 ~~~~~ill~G~~GtGKT~la~ala~~~---~~~~~~v~~~~~ 156 (197)
.++..+.|.||..+|||+++..+.+.+ +..++++++..+
T Consensus 29 ~~G~~~~I~apRq~GKTSll~~l~~~l~~~~~~~v~id~~~~ 70 (331)
T PF14516_consen 29 QPGSYIRIKAPRQMGKTSLLLRLLERLQQQGYRCVYIDLQQL 70 (331)
T ss_pred cCCCEEEEECcccCCHHHHHHHHHHHHHHCCCEEEEEEeecC
Confidence 346678999999999999999987665 778888887654
No 403
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=97.54 E-value=0.00026 Score=60.01 Aligned_cols=31 Identities=19% Similarity=0.236 Sum_probs=27.1
Q ss_pred CCceEEECCCCCcHHHHHHHHHHHhCCeEEE
Q psy6208 120 PRGILLYGPPGTGKTLIARAVANETGAFFFL 150 (197)
Q Consensus 120 ~~~ill~G~~GtGKT~la~ala~~~~~~~~~ 150 (197)
...|.|.|++|||||+|+++|+...|..++.
T Consensus 219 ~~~IvI~G~~gsGKTTL~~~La~~~g~~~v~ 249 (399)
T PRK08099 219 VRTVAILGGESSGKSTLVNKLANIFNTTSAW 249 (399)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHhCCCeee
Confidence 4569999999999999999999998876544
No 404
>COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=97.54 E-value=0.0004 Score=55.25 Aligned_cols=84 Identities=20% Similarity=0.430 Sum_probs=58.6
Q ss_pred ccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHhC----CeEEEEech-hhh---------hhccCccHHHHHHH
Q psy6208 106 LRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANETG----AFFFLINGP-EIM---------SKLAGESESNLRKA 171 (197)
Q Consensus 106 ~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~~----~~~~~v~~~-~~~---------~~~~~~~~~~~~~~ 171 (197)
+.-|+..+.+.+.+..-+++.|++|+|||+...++...-+ .+.+.+.-+ ++. ..-+|-....+..+
T Consensus 113 L~LPevlk~la~~kRGLviiVGaTGSGKSTtmAaMi~yRN~~s~gHIiTIEDPIEfih~h~~CIvTQREvGvDTesw~~A 192 (375)
T COG5008 113 LKLPEVLKDLALAKRGLVIIVGATGSGKSTTMAAMIGYRNKNSTGHIITIEDPIEFIHKHKRCIVTQREVGVDTESWEVA 192 (375)
T ss_pred cCCcHHHHHhhcccCceEEEECCCCCCchhhHHHHhcccccCCCCceEEecChHHHHhcccceeEEeeeeccchHHHHHH
Confidence 4567777777777777789999999999998777754332 234444322 222 12345555677778
Q ss_pred HHHHhcCCCeEEEEcccC
Q psy6208 172 FEEADKNSPSIIFIDELD 189 (197)
Q Consensus 172 ~~~a~~~~~~vl~lDeid 189 (197)
++...+.+|+||+|.|+.
T Consensus 193 lkNtlRQapDvI~IGEvR 210 (375)
T COG5008 193 LKNTLRQAPDVILIGEVR 210 (375)
T ss_pred HHHHHhcCCCeEEEeecc
Confidence 888888899999999985
No 405
>PRK05541 adenylylsulfate kinase; Provisional
Probab=97.54 E-value=0.00015 Score=54.33 Aligned_cols=39 Identities=28% Similarity=0.395 Sum_probs=30.1
Q ss_pred CCCCceEEECCCCCcHHHHHHHHHHHhC---CeEEEEechhh
Q psy6208 118 KPPRGILLYGPPGTGKTLIARAVANETG---AFFFLINGPEI 156 (197)
Q Consensus 118 ~~~~~ill~G~~GtGKT~la~ala~~~~---~~~~~v~~~~~ 156 (197)
..+..|+|.|++|+|||++++.++..+. ...+.++...+
T Consensus 5 ~~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~~d~~ 46 (176)
T PRK05541 5 PNGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDGDEL 46 (176)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEecHHH
Confidence 3456789999999999999999998884 33556665444
No 406
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=97.54 E-value=9.1e-05 Score=54.81 Aligned_cols=34 Identities=35% Similarity=0.456 Sum_probs=23.8
Q ss_pred eEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhh
Q psy6208 123 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEIM 157 (197)
Q Consensus 123 ill~G~~GtGKT~la~ala~~~~~~~~~v~~~~~~ 157 (197)
|.|+|++|||||+|+++|+.. |.+++.-....+.
T Consensus 2 I~i~G~~stGKTTL~~~L~~~-g~~~v~E~ar~~~ 35 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR-GYPVVPEYAREII 35 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH-T-EEE--TTHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHc-CCeEEeecHHHHH
Confidence 789999999999999999988 8877644444443
No 407
>PRK14526 adenylate kinase; Provisional
Probab=97.53 E-value=0.00013 Score=56.50 Aligned_cols=28 Identities=36% Similarity=0.765 Sum_probs=24.5
Q ss_pred ceEEECCCCCcHHHHHHHHHHHhCCeEE
Q psy6208 122 GILLYGPPGTGKTLIARAVANETGAFFF 149 (197)
Q Consensus 122 ~ill~G~~GtGKT~la~ala~~~~~~~~ 149 (197)
.++|.||||+|||++++.++..++..++
T Consensus 2 ~i~l~G~pGsGKsT~a~~La~~~~~~~i 29 (211)
T PRK14526 2 KLVFLGPPGSGKGTIAKILSNELNYYHI 29 (211)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcee
Confidence 4789999999999999999998876554
No 408
>PRK05973 replicative DNA helicase; Provisional
Probab=97.53 E-value=0.00016 Score=56.95 Aligned_cols=39 Identities=33% Similarity=0.401 Sum_probs=31.4
Q ss_pred CCCCCCceEEECCCCCcHHHHHHHHHHHh---CCeEEEEech
Q psy6208 116 GVKPPRGILLYGPPGTGKTLIARAVANET---GAFFFLINGP 154 (197)
Q Consensus 116 ~~~~~~~ill~G~~GtGKT~la~ala~~~---~~~~~~v~~~ 154 (197)
|+.+...++|.|+||+|||+++..++... |.++++++.+
T Consensus 60 Gl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlE 101 (237)
T PRK05973 60 QLKPGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLE 101 (237)
T ss_pred CCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEe
Confidence 56667779999999999999999886644 7778777754
No 409
>PRK04182 cytidylate kinase; Provisional
Probab=97.53 E-value=0.0001 Score=55.07 Aligned_cols=29 Identities=41% Similarity=0.621 Sum_probs=26.1
Q ss_pred ceEEECCCCCcHHHHHHHHHHHhCCeEEE
Q psy6208 122 GILLYGPPGTGKTLIARAVANETGAFFFL 150 (197)
Q Consensus 122 ~ill~G~~GtGKT~la~ala~~~~~~~~~ 150 (197)
.|+|.|++|+|||++++.++..++.+++.
T Consensus 2 ~I~i~G~~GsGKstia~~la~~lg~~~id 30 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKLGLKHVS 30 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEec
Confidence 37899999999999999999999987764
No 410
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.52 E-value=0.00019 Score=53.57 Aligned_cols=28 Identities=25% Similarity=0.563 Sum_probs=24.4
Q ss_pred CCCCCceEEECCCCCcHHHHHHHHHHHh
Q psy6208 117 VKPPRGILLYGPPGTGKTLIARAVANET 144 (197)
Q Consensus 117 ~~~~~~ill~G~~GtGKT~la~ala~~~ 144 (197)
+.++..+.|.||+|+|||+|++.++...
T Consensus 25 i~~G~~~~l~G~nGsGKstLl~~i~G~~ 52 (171)
T cd03228 25 IKPGEKVAIVGPSGSGKSTLLKLLLRLY 52 (171)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 4566779999999999999999998765
No 411
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=97.51 E-value=0.00026 Score=52.86 Aligned_cols=42 Identities=26% Similarity=0.467 Sum_probs=35.2
Q ss_pred CCCCceEEECCCCCcHHHHHHHHHHHh---CCeEEEEechhhhhh
Q psy6208 118 KPPRGILLYGPPGTGKTLIARAVANET---GAFFFLINGPEIMSK 159 (197)
Q Consensus 118 ~~~~~ill~G~~GtGKT~la~ala~~~---~~~~~~v~~~~~~~~ 159 (197)
..+..|.|+|.+|+|||++|.++...+ |.+++.+++..+...
T Consensus 21 ~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnvR~g 65 (197)
T COG0529 21 QKGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNVRHG 65 (197)
T ss_pred CCCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecChhHhhc
Confidence 345578999999999999999999887 889999998776543
No 412
>KOG2680|consensus
Probab=97.51 E-value=0.00014 Score=58.70 Aligned_cols=89 Identities=29% Similarity=0.364 Sum_probs=61.9
Q ss_pred hhcCCCCcccccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHhC--CeEEEEechh
Q psy6208 78 EASNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANETG--AFFFLINGPE 155 (197)
Q Consensus 78 ~~~~~~~~~~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~~--~~~~~v~~~~ 155 (197)
.+.+.+..+.++|+-.+.+..--.+...-. |--..+.+|+.|+||+|||.+|..+++.+| .||..+.+++
T Consensus 32 ~le~~~~s~GmVGQ~~AR~Aagvi~kmi~e--------gkiaGraiLiaG~pgtGKtAiAmg~sksLG~~tpF~~i~gSE 103 (454)
T KOG2680|consen 32 VLEPRYVSEGMVGQVKARKAAGVILKMIRE--------GKIAGRAILIAGQPGTGKTAIAMGMSKSLGDDTPFTSISGSE 103 (454)
T ss_pred ccCcccccccchhhHHHHHHhHHHHHHHHc--------CcccceEEEEecCCCCCceeeeeehhhhhCCCCceeeeecce
Confidence 344566667788888877765444433211 112356799999999999999999999996 4899999999
Q ss_pred hhhhccCccHHHHHHHHHHH
Q psy6208 156 IMSKLAGESESNLRKAFEEA 175 (197)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~a 175 (197)
+.+.-....+ .+.++|..+
T Consensus 104 I~SlEmsKTE-AltQAfRks 122 (454)
T KOG2680|consen 104 IYSLEMSKTE-ALTQAFRKS 122 (454)
T ss_pred eeeecccHHH-HHHHHHHHh
Confidence 8765544333 455556554
No 413
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=97.51 E-value=0.00011 Score=54.40 Aligned_cols=29 Identities=34% Similarity=0.608 Sum_probs=26.0
Q ss_pred eEEECCCCCcHHHHHHHHHHHhCCeEEEE
Q psy6208 123 ILLYGPPGTGKTLIARAVANETGAFFFLI 151 (197)
Q Consensus 123 ill~G~~GtGKT~la~ala~~~~~~~~~v 151 (197)
|.|+|++|+|||++++.+++.++.+++..
T Consensus 3 I~i~G~~GSGKstia~~la~~lg~~~~~~ 31 (171)
T TIGR02173 3 ITISGPPGSGKTTVAKILAEKLSLKLISA 31 (171)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCceecH
Confidence 78999999999999999999998886553
No 414
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=97.50 E-value=8.5e-05 Score=54.29 Aligned_cols=32 Identities=31% Similarity=0.604 Sum_probs=25.8
Q ss_pred EECCCCCcHHHHHHHHHHHhCCeEEEEechhhhh
Q psy6208 125 LYGPPGTGKTLIARAVANETGAFFFLINGPEIMS 158 (197)
Q Consensus 125 l~G~~GtGKT~la~ala~~~~~~~~~v~~~~~~~ 158 (197)
|.||||+|||++++.||...+.. +++..++..
T Consensus 1 i~G~PgsGK~t~~~~la~~~~~~--~is~~~llr 32 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYGLV--HISVGDLLR 32 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHTSE--EEEHHHHHH
T ss_pred CcCCCCCChHHHHHHHHHhcCcc--eechHHHHH
Confidence 67999999999999999999754 555555543
No 415
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=97.50 E-value=0.00012 Score=55.84 Aligned_cols=73 Identities=23% Similarity=0.293 Sum_probs=31.4
Q ss_pred eEEECCCCCcHHHHHHHH-HHHh---CCeEEEEechhhhhhccCc-----cHH------------HHHHHHHHHhcCCCe
Q psy6208 123 ILLYGPPGTGKTLIARAV-ANET---GAFFFLINGPEIMSKLAGE-----SES------------NLRKAFEEADKNSPS 181 (197)
Q Consensus 123 ill~G~~GtGKT~la~al-a~~~---~~~~~~v~~~~~~~~~~~~-----~~~------------~~~~~~~~a~~~~~~ 181 (197)
.+++|.||+|||..|-.. .... |++++. |-..+.-+.... ... ..............+
T Consensus 3 ~~~~G~pGsGKS~~av~~~i~~~l~~gr~V~t-ni~gL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (193)
T PF05707_consen 3 YLITGKPGSGKSYYAVSYVIIPALKKGRPVYT-NIPGLNIEKIQPVLGYDIPTRLIDLSDPDFEEDWDDPDDWRKLPKGS 81 (193)
T ss_dssp EEEE--TTSSHHHHHHHHHHH-GGGS---EEE---TTB-S--EEEE--TTT-S-----S--SSSEEGGGHHHHTTSGTT-
T ss_pred EEEEcCCCCcHhHHHHHHHHHHHHhCCCEEEE-ccCCcchhhhhhhccccccccccccccccchhhhhhhhhhcccCCCc
Confidence 578999999999988655 3322 555544 543222111100 000 000111111111467
Q ss_pred EEEEcccCccCcccC
Q psy6208 182 IIFIDELDAIAPKRE 196 (197)
Q Consensus 182 vl~lDeid~l~~~r~ 196 (197)
+|+|||++.+.++|.
T Consensus 82 liviDEa~~~~~~r~ 96 (193)
T PF05707_consen 82 LIVIDEAQNFFPSRS 96 (193)
T ss_dssp EEEETTGGGTSB---
T ss_pred EEEEECChhhcCCCc
Confidence 999999999999875
No 416
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=97.49 E-value=0.0004 Score=63.13 Aligned_cols=77 Identities=26% Similarity=0.383 Sum_probs=49.8
Q ss_pred CCCCCceEEECCCCCcHHHHHHHHHHH---hCCeEEEEechhhhhh------------c----cCccHHHHHHHHHHHhc
Q psy6208 117 VKPPRGILLYGPPGTGKTLIARAVANE---TGAFFFLINGPEIMSK------------L----AGESESNLRKAFEEADK 177 (197)
Q Consensus 117 ~~~~~~ill~G~~GtGKT~la~ala~~---~~~~~~~v~~~~~~~~------------~----~~~~~~~~~~~~~~a~~ 177 (197)
+.....++|+||+|+|||+|+..++.. .+..+++++.++-... + ....+..+..+-.....
T Consensus 57 ip~GsiteI~G~~GsGKTtLal~~~~~a~~~G~~v~yId~E~t~~~~~A~~lGvDl~~llv~~~~~~E~~l~~i~~lv~~ 136 (790)
T PRK09519 57 LPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDTGEQALEIADMLIRS 136 (790)
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchhHHHHHHcCCChhHeEEecCCCHHHHHHHHHHHhhc
Confidence 556667899999999999999766443 3677888886543220 0 01112222222222344
Q ss_pred CCCeEEEEcccCccCc
Q psy6208 178 NSPSIIFIDELDAIAP 193 (197)
Q Consensus 178 ~~~~vl~lDeid~l~~ 193 (197)
..+++|+||-+..|.+
T Consensus 137 ~~~~LVVIDSI~aL~~ 152 (790)
T PRK09519 137 GALDIVVIDSVAALVP 152 (790)
T ss_pred CCCeEEEEcchhhhcc
Confidence 5799999999998886
No 417
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.48 E-value=0.00027 Score=59.02 Aligned_cols=27 Identities=26% Similarity=0.444 Sum_probs=23.6
Q ss_pred CCCCceEEECCCCCcHHHHHHHHHHHh
Q psy6208 118 KPPRGILLYGPPGTGKTLIARAVANET 144 (197)
Q Consensus 118 ~~~~~ill~G~~GtGKT~la~ala~~~ 144 (197)
......+|.||+|+|||++++.+++.+
T Consensus 131 GkGQR~LIvG~pGtGKTTLl~~la~~i 157 (380)
T PRK12608 131 GKGQRGLIVAPPRAGKTVLLQQIAAAV 157 (380)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 445668999999999999999998876
No 418
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=97.47 E-value=0.00013 Score=55.21 Aligned_cols=29 Identities=28% Similarity=0.488 Sum_probs=24.4
Q ss_pred CceEEECCCCCcHHHHHHHHHHHhCCeEE
Q psy6208 121 RGILLYGPPGTGKTLIARAVANETGAFFF 149 (197)
Q Consensus 121 ~~ill~G~~GtGKT~la~ala~~~~~~~~ 149 (197)
..++|.||+|+|||++++.++...+..+.
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~~~~~~ 31 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQREQTQLL 31 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccCCCeEE
Confidence 36889999999999999999988765443
No 419
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=97.47 E-value=0.00013 Score=56.96 Aligned_cols=38 Identities=29% Similarity=0.497 Sum_probs=29.3
Q ss_pred CCCCCCceEEECCCCCcHHHHHHHHHHHh----CCeEEEEec
Q psy6208 116 GVKPPRGILLYGPPGTGKTLIARAVANET----GAFFFLING 153 (197)
Q Consensus 116 ~~~~~~~ill~G~~GtGKT~la~ala~~~----~~~~~~v~~ 153 (197)
|+..+..+++.|+||+|||.++..++... +.++++++.
T Consensus 15 Gip~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ 56 (226)
T PF06745_consen 15 GIPKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSF 56 (226)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEES
T ss_pred CCCCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEe
Confidence 45677789999999999999999876433 788888875
No 420
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=97.47 E-value=0.00016 Score=61.27 Aligned_cols=25 Identities=44% Similarity=0.723 Sum_probs=23.0
Q ss_pred CCceEEECCCCCcHHHHHHHHHHHh
Q psy6208 120 PRGILLYGPPGTGKTLIARAVANET 144 (197)
Q Consensus 120 ~~~ill~G~~GtGKT~la~ala~~~ 144 (197)
..|||+.||||.|||++|+|+|..+
T Consensus 263 aeGILIAG~PGaGKsTFaqAlAefy 287 (604)
T COG1855 263 AEGILIAGAPGAGKSTFAQALAEFY 287 (604)
T ss_pred hcceEEecCCCCChhHHHHHHHHHH
Confidence 4589999999999999999999876
No 421
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=97.47 E-value=0.00019 Score=59.51 Aligned_cols=29 Identities=31% Similarity=0.437 Sum_probs=25.5
Q ss_pred CCCCceEEECCCCCcHHHHHHHHHHHhCC
Q psy6208 118 KPPRGILLYGPPGTGKTLIARAVANETGA 146 (197)
Q Consensus 118 ~~~~~ill~G~~GtGKT~la~ala~~~~~ 146 (197)
..+..+||+||+|+||+++|+++|+.+.+
T Consensus 19 rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC 47 (342)
T PRK06964 19 RLPHALLLHGQAGIGKLDFAQHLAQGLLC 47 (342)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHHHHcC
Confidence 45678999999999999999999988744
No 422
>PRK01184 hypothetical protein; Provisional
Probab=97.46 E-value=0.00014 Score=54.91 Aligned_cols=29 Identities=31% Similarity=0.480 Sum_probs=24.4
Q ss_pred ceEEECCCCCcHHHHHHHHHHHhCCeEEEE
Q psy6208 122 GILLYGPPGTGKTLIARAVANETGAFFFLI 151 (197)
Q Consensus 122 ~ill~G~~GtGKT~la~ala~~~~~~~~~v 151 (197)
-|+|+|+||+||||+++ ++++.+.+++..
T Consensus 3 ~i~l~G~~GsGKsT~a~-~~~~~g~~~i~~ 31 (184)
T PRK01184 3 IIGVVGMPGSGKGEFSK-IAREMGIPVVVM 31 (184)
T ss_pred EEEEECCCCCCHHHHHH-HHHHcCCcEEEh
Confidence 47899999999999987 788888777654
No 423
>PRK14529 adenylate kinase; Provisional
Probab=97.45 E-value=0.00017 Score=56.36 Aligned_cols=28 Identities=29% Similarity=0.507 Sum_probs=25.0
Q ss_pred ceEEECCCCCcHHHHHHHHHHHhCCeEE
Q psy6208 122 GILLYGPPGTGKTLIARAVANETGAFFF 149 (197)
Q Consensus 122 ~ill~G~~GtGKT~la~ala~~~~~~~~ 149 (197)
.|+|.||||+|||++++.|+..++.+.+
T Consensus 2 ~I~l~G~PGsGK~T~a~~La~~~~~~~i 29 (223)
T PRK14529 2 NILIFGPNGSGKGTQGALVKKKYDLAHI 29 (223)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCc
Confidence 4889999999999999999999986654
No 424
>KOG2035|consensus
Probab=97.44 E-value=0.00054 Score=54.79 Aligned_cols=52 Identities=19% Similarity=0.254 Sum_probs=39.1
Q ss_pred cCCCCcccccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHh
Q psy6208 80 SNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANET 144 (197)
Q Consensus 80 ~~~~~~~~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~ 144 (197)
..+-+++.+.+..+....++..... ..-+++++|||+|+||-+.+.++-+++
T Consensus 7 yrpksl~~l~~~~e~~~~Lksl~~~-------------~d~PHll~yGPSGaGKKTrimclL~el 58 (351)
T KOG2035|consen 7 YRPKSLDELIYHEELANLLKSLSST-------------GDFPHLLVYGPSGAGKKTRIMCLLREL 58 (351)
T ss_pred cCcchhhhcccHHHHHHHHHHhccc-------------CCCCeEEEECCCCCCchhhHHHHHHHH
Confidence 3445667777777777777766541 223579999999999999999998876
No 425
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=97.44 E-value=0.0015 Score=55.78 Aligned_cols=74 Identities=20% Similarity=0.209 Sum_probs=47.1
Q ss_pred CCceEEECCCCCcHHHHHHHHHHHh---CCeEEEEechhhh----------hh-----ccC----cc-HHHHHHHHHHHh
Q psy6208 120 PRGILLYGPPGTGKTLIARAVANET---GAFFFLINGPEIM----------SK-----LAG----ES-ESNLRKAFEEAD 176 (197)
Q Consensus 120 ~~~ill~G~~GtGKT~la~ala~~~---~~~~~~v~~~~~~----------~~-----~~~----~~-~~~~~~~~~~a~ 176 (197)
+.-++|.|++|+||||++..+|..+ |..+..+++.... .. +.. .. .......++.+.
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~~ 179 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKFK 179 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHHH
Confidence 4568999999999999999998776 6677777663221 00 010 01 112233445555
Q ss_pred cCCCeEEEEcccCccCc
Q psy6208 177 KNSPSIIFIDELDAIAP 193 (197)
Q Consensus 177 ~~~~~vl~lDeid~l~~ 193 (197)
....++||+|=...+..
T Consensus 180 ~~~~DvViIDTaGr~~~ 196 (429)
T TIGR01425 180 KENFDIIIVDTSGRHKQ 196 (429)
T ss_pred hCCCCEEEEECCCCCcc
Confidence 55578999998776654
No 426
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=97.43 E-value=0.00071 Score=55.59 Aligned_cols=40 Identities=15% Similarity=0.189 Sum_probs=30.3
Q ss_pred CCCCCCceEEECCCCCcHHHHHHHHHHH---------hCCeEEEEechh
Q psy6208 116 GVKPPRGILLYGPPGTGKTLIARAVANE---------TGAFFFLINGPE 155 (197)
Q Consensus 116 ~~~~~~~ill~G~~GtGKT~la~ala~~---------~~~~~~~v~~~~ 155 (197)
|+....-..|+||||+|||.++..++-. .+..++|++...
T Consensus 92 Gi~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~ 140 (313)
T TIGR02238 92 GIESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEG 140 (313)
T ss_pred CCcCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCC
Confidence 3555566789999999999999987632 145788888654
No 427
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=97.43 E-value=0.00014 Score=59.76 Aligned_cols=73 Identities=25% Similarity=0.397 Sum_probs=51.0
Q ss_pred CCCCceEEECCCCCcHHHHHHHHHHHhC--CeEEEEe-chhhhh-------hcc-----CccHHHHHHHHHHHhcCCCeE
Q psy6208 118 KPPRGILLYGPPGTGKTLIARAVANETG--AFFFLIN-GPEIMS-------KLA-----GESESNLRKAFEEADKNSPSI 182 (197)
Q Consensus 118 ~~~~~ill~G~~GtGKT~la~ala~~~~--~~~~~v~-~~~~~~-------~~~-----~~~~~~~~~~~~~a~~~~~~v 182 (197)
....+++++|++|+|||+++.++..... .+++.+. ..++.- ... +..+-....+++.+.+.+|+.
T Consensus 141 e~~~siii~G~t~sGKTt~lnall~~Ip~~~rivtIEdt~E~~~~~~n~~~l~~r~~~~~~~~v~~~dll~aalR~rPd~ 220 (312)
T COG0630 141 EARKSIIICGGTASGKTTLLNALLDFIPPEERIVTIEDTPELKLPHENWVQLVTREGESGSSEVSLEDLLRAALRQRPDY 220 (312)
T ss_pred HcCCcEEEECCCCCCHHHHHHHHHHhCCchhcEEEEeccccccCCCCCEEEEEecCCCCCccccCHHHHHHHHHhcCCCe
Confidence 4577899999999999999999988773 2333332 112211 011 113346778889999999999
Q ss_pred EEEcccCc
Q psy6208 183 IFIDELDA 190 (197)
Q Consensus 183 l~lDeid~ 190 (197)
|+++|+..
T Consensus 221 IivgEvrg 228 (312)
T COG0630 221 IIVGELRG 228 (312)
T ss_pred EEEeeeec
Confidence 99999853
No 428
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=97.42 E-value=0.00059 Score=51.22 Aligned_cols=28 Identities=25% Similarity=0.472 Sum_probs=24.1
Q ss_pred CCCCCceEEECCCCCcHHHHHHHHHHHh
Q psy6208 117 VKPPRGILLYGPPGTGKTLIARAVANET 144 (197)
Q Consensus 117 ~~~~~~ill~G~~GtGKT~la~ala~~~ 144 (197)
+.++..+.|.||+|+|||+|++.++...
T Consensus 25 i~~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (178)
T cd03247 25 LKQGEKIALLGRSGSGKSTLLQLLTGDL 52 (178)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 4566779999999999999999998764
No 429
>PRK10867 signal recognition particle protein; Provisional
Probab=97.42 E-value=0.0019 Score=55.30 Aligned_cols=74 Identities=24% Similarity=0.374 Sum_probs=46.7
Q ss_pred CCCceEEECCCCCcHHHHHHHHHHHh----CCeEEEEechhhhh----------h-----cc----Ccc-HHHHHHHHHH
Q psy6208 119 PPRGILLYGPPGTGKTLIARAVANET----GAFFFLINGPEIMS----------K-----LA----GES-ESNLRKAFEE 174 (197)
Q Consensus 119 ~~~~ill~G~~GtGKT~la~ala~~~----~~~~~~v~~~~~~~----------~-----~~----~~~-~~~~~~~~~~ 174 (197)
++.-+++.|++|+|||+++..+|..+ +..+..+++..... . +. ... ........+.
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v~~~~~~~dp~~i~~~a~~~ 178 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQLKTLGEQIGVPVFPSGDGQDPVDIAKAALEE 178 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHHHHHH
Confidence 35668999999999999888777654 56677777642211 0 01 111 1222344455
Q ss_pred HhcCCCeEEEEcccCccC
Q psy6208 175 ADKNSPSIIFIDELDAIA 192 (197)
Q Consensus 175 a~~~~~~vl~lDeid~l~ 192 (197)
+.....++|++|=...+.
T Consensus 179 a~~~~~DvVIIDTaGrl~ 196 (433)
T PRK10867 179 AKENGYDVVIVDTAGRLH 196 (433)
T ss_pred HHhcCCCEEEEeCCCCcc
Confidence 555567899999887664
No 430
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=97.41 E-value=0.00041 Score=51.60 Aligned_cols=28 Identities=43% Similarity=0.685 Sum_probs=24.2
Q ss_pred CCCCCceEEECCCCCcHHHHHHHHHHHh
Q psy6208 117 VKPPRGILLYGPPGTGKTLIARAVANET 144 (197)
Q Consensus 117 ~~~~~~ill~G~~GtGKT~la~ala~~~ 144 (197)
+.++..+.|.||+|+|||+|++.++...
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (166)
T cd03223 24 IKPGDRLLITGPSGTGKSSLFRALAGLW 51 (166)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4566679999999999999999998764
No 431
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.41 E-value=0.0018 Score=55.37 Aligned_cols=71 Identities=24% Similarity=0.197 Sum_probs=43.5
Q ss_pred CCceEEECCCCCcHHHHHHHHHHHh-----CCeEEEEechhhhh-------h---------ccCccHHHHHHHHHHHhcC
Q psy6208 120 PRGILLYGPPGTGKTLIARAVANET-----GAFFFLINGPEIMS-------K---------LAGESESNLRKAFEEADKN 178 (197)
Q Consensus 120 ~~~ill~G~~GtGKT~la~ala~~~-----~~~~~~v~~~~~~~-------~---------~~~~~~~~~~~~~~~a~~~ 178 (197)
+..++|.||+|+||||++..+|..+ +..+..+++..... . ........+...+....
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~~-- 298 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQLR-- 298 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHhC--
Confidence 4568999999999999998887643 45677777644210 0 01112223333333332
Q ss_pred CCeEEEEcccCccC
Q psy6208 179 SPSIIFIDELDAIA 192 (197)
Q Consensus 179 ~~~vl~lDeid~l~ 192 (197)
..++|+||......
T Consensus 299 ~~DlVlIDt~G~~~ 312 (424)
T PRK05703 299 DCDVILIDTAGRSQ 312 (424)
T ss_pred CCCEEEEeCCCCCC
Confidence 46899999876543
No 432
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=97.41 E-value=0.0007 Score=51.47 Aligned_cols=33 Identities=18% Similarity=0.157 Sum_probs=25.5
Q ss_pred CCCceEEECCCCCcHHHHHHHHHHHh---CCeEEEE
Q psy6208 119 PPRGILLYGPPGTGKTLIARAVANET---GAFFFLI 151 (197)
Q Consensus 119 ~~~~ill~G~~GtGKT~la~ala~~~---~~~~~~v 151 (197)
....+.+||++|.||||+|-.++-+. |.++..+
T Consensus 21 ~~g~v~v~~g~GkGKtt~a~g~a~ra~g~G~~V~iv 56 (191)
T PRK05986 21 EKGLLIVHTGNGKGKSTAAFGMALRAVGHGKKVGVV 56 (191)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHHHHHCCCeEEEE
Confidence 34579999999999999999987664 5554443
No 433
>PRK00889 adenylylsulfate kinase; Provisional
Probab=97.40 E-value=0.00029 Score=52.74 Aligned_cols=37 Identities=32% Similarity=0.468 Sum_probs=29.5
Q ss_pred CCceEEECCCCCcHHHHHHHHHHHh---CCeEEEEechhh
Q psy6208 120 PRGILLYGPPGTGKTLIARAVANET---GAFFFLINGPEI 156 (197)
Q Consensus 120 ~~~ill~G~~GtGKT~la~ala~~~---~~~~~~v~~~~~ 156 (197)
+..+.|.|+||+|||++++.++..+ +..+..++...+
T Consensus 4 g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D~~ 43 (175)
T PRK00889 4 GVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGDAV 43 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCccH
Confidence 4568999999999999999999887 445666766443
No 434
>KOG1051|consensus
Probab=97.40 E-value=0.0012 Score=60.59 Aligned_cols=98 Identities=23% Similarity=0.395 Sum_probs=70.0
Q ss_pred cccccCc-HHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHh----------CCeEEEEec
Q psy6208 85 YDDIGGC-RKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANET----------GAFFFLING 153 (197)
Q Consensus 85 ~~~i~g~-~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~----------~~~~~~v~~ 153 (197)
.+-+.|. ++.++.+.+.+.. ...++-+|.|.||+|||.++.-+++.. +..++.++.
T Consensus 185 ldPvigr~deeirRvi~iL~R-------------rtk~NPvLVG~~gvgktaiv~gla~ri~~G~vp~~l~~~~l~~l~~ 251 (898)
T KOG1051|consen 185 LDPVIGRHDEEIRRVIEILSR-------------KTKNNPVLVGEPGVGKTAIVEGLAQRIATGDVPETLKDKKLIALDF 251 (898)
T ss_pred CCCccCCchHHHHHHHHHHhc-------------cCCCCceEEecCCCCchhHHHHHHHHhhcCCCCccccccceEEEEh
Confidence 3445555 7777776666654 334688999999999999999999875 234555555
Q ss_pred hhhh--hhccCccHHHHHHHHHHHh-cCCCeEEEEcccCccCccc
Q psy6208 154 PEIM--SKLAGESESNLRKAFEEAD-KNSPSIIFIDELDAIAPKR 195 (197)
Q Consensus 154 ~~~~--~~~~~~~~~~~~~~~~~a~-~~~~~vl~lDeid~l~~~r 195 (197)
..+. ..+.++.+..++.+.+.+. .+..-||||||++.+.+..
T Consensus 252 g~l~aGa~~rge~E~rlk~l~k~v~~~~~gvILfigelh~lvg~g 296 (898)
T KOG1051|consen 252 GSLVAGAKRRGEFEERLKELLKEVESGGGGVILFLGELHWLVGSG 296 (898)
T ss_pred hhcccCcccchHHHHHHHHHHHHHhcCCCcEEEEecceeeeecCC
Confidence 4333 3345667788888888776 4556799999999987754
No 435
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=97.39 E-value=0.00078 Score=50.36 Aligned_cols=28 Identities=29% Similarity=0.648 Sum_probs=23.8
Q ss_pred CCCCCceEEECCCCCcHHHHHHHHHHHh
Q psy6208 117 VKPPRGILLYGPPGTGKTLIARAVANET 144 (197)
Q Consensus 117 ~~~~~~ill~G~~GtGKT~la~ala~~~ 144 (197)
+.++..+.|.||+|+|||+|++.++...
T Consensus 25 i~~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (173)
T cd03246 25 IEPGESLAIIGPSGSGKSTLARLILGLL 52 (173)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 3456678999999999999999998764
No 436
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.38 E-value=0.00016 Score=53.99 Aligned_cols=23 Identities=43% Similarity=0.791 Sum_probs=20.2
Q ss_pred ceEEECCCCCcHHHHHHHHHHHh
Q psy6208 122 GILLYGPPGTGKTLIARAVANET 144 (197)
Q Consensus 122 ~ill~G~~GtGKT~la~ala~~~ 144 (197)
+++|+|+||+||||+++.+.+.+
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHH
T ss_pred CEEEECcCCCCHHHHHHHHHHHh
Confidence 48999999999999999998887
No 437
>PLN02199 shikimate kinase
Probab=97.38 E-value=0.0005 Score=55.69 Aligned_cols=34 Identities=29% Similarity=0.468 Sum_probs=30.4
Q ss_pred CCCceEEECCCCCcHHHHHHHHHHHhCCeEEEEe
Q psy6208 119 PPRGILLYGPPGTGKTLIARAVANETGAFFFLIN 152 (197)
Q Consensus 119 ~~~~ill~G~~GtGKT~la~ala~~~~~~~~~v~ 152 (197)
.+.+|+|.|.+|+|||++++.+|+.++++++..+
T Consensus 101 ~~~~I~LIG~~GSGKSTVgr~LA~~Lg~~fIDtD 134 (303)
T PLN02199 101 NGRSMYLVGMMGSGKTTVGKLMSKVLGYTFFDCD 134 (303)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCCEEehH
Confidence 4668999999999999999999999999887655
No 438
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=97.38 E-value=0.00041 Score=53.08 Aligned_cols=37 Identities=19% Similarity=0.238 Sum_probs=29.4
Q ss_pred ceEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhhhc
Q psy6208 122 GILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKL 160 (197)
Q Consensus 122 ~ill~G~~GtGKT~la~ala~~~~~~~~~v~~~~~~~~~ 160 (197)
-|.++|++|+|||++++.+++..|.+++ ++.++....
T Consensus 3 ~i~itG~~gsGKst~~~~l~~~~g~~~i--~~D~~~~~~ 39 (195)
T PRK14730 3 RIGLTGGIASGKSTVGNYLAQQKGIPIL--DADIYAREA 39 (195)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCCeEe--eCcHHHHHH
Confidence 4789999999999999999988787765 555554443
No 439
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=97.38 E-value=0.00083 Score=58.47 Aligned_cols=39 Identities=26% Similarity=0.269 Sum_probs=31.1
Q ss_pred CCCCCCceEEECCCCCcHHHHHHHHHHH----hCCeEEEEech
Q psy6208 116 GVKPPRGILLYGPPGTGKTLIARAVANE----TGAFFFLINGP 154 (197)
Q Consensus 116 ~~~~~~~ill~G~~GtGKT~la~ala~~----~~~~~~~v~~~ 154 (197)
|+..+..+++.|+||||||+++..++.+ .+.+.++++..
T Consensus 17 Glp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~e 59 (484)
T TIGR02655 17 GLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFE 59 (484)
T ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 4667788999999999999999988543 25788887754
No 440
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=97.38 E-value=0.00068 Score=50.21 Aligned_cols=23 Identities=30% Similarity=0.491 Sum_probs=20.0
Q ss_pred CCceEEECCCCCcHHHHHHHHHH
Q psy6208 120 PRGILLYGPPGTGKTLIARAVAN 142 (197)
Q Consensus 120 ~~~ill~G~~GtGKT~la~ala~ 142 (197)
++..+|.||.|+|||+++++++-
T Consensus 21 ~~~~~i~G~NgsGKS~~l~~i~~ 43 (162)
T cd03227 21 GSLTIITGPNGSGKSTILDAIGL 43 (162)
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 34789999999999999999854
No 441
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=97.36 E-value=0.00017 Score=54.12 Aligned_cols=24 Identities=25% Similarity=0.397 Sum_probs=21.7
Q ss_pred ceEEECCCCCcHHHHHHHHHHHhC
Q psy6208 122 GILLYGPPGTGKTLIARAVANETG 145 (197)
Q Consensus 122 ~ill~G~~GtGKT~la~ala~~~~ 145 (197)
.++|.||||+|||+++++++..++
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 478999999999999999998764
No 442
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=97.36 E-value=0.00086 Score=50.23 Aligned_cols=30 Identities=27% Similarity=0.174 Sum_probs=23.7
Q ss_pred CceEEECCCCCcHHHHHHHHHHHh---CCeEEE
Q psy6208 121 RGILLYGPPGTGKTLIARAVANET---GAFFFL 150 (197)
Q Consensus 121 ~~ill~G~~GtGKT~la~ala~~~---~~~~~~ 150 (197)
.-+.+++++|.|||++|-.+|-+. |.++..
T Consensus 6 Gli~v~~g~GkGKtt~a~g~a~ra~~~g~~v~i 38 (173)
T TIGR00708 6 GIIIVHTGNGKGKTTAAFGMALRALGHGKKVGV 38 (173)
T ss_pred cEEEEECCCCCChHHHHHHHHHHHHHCCCeEEE
Confidence 357899999999999999997665 566543
No 443
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=97.34 E-value=0.00082 Score=50.66 Aligned_cols=25 Identities=32% Similarity=0.575 Sum_probs=21.2
Q ss_pred CCceEEECCCCCcHHHHHHHHHHHh
Q psy6208 120 PRGILLYGPPGTGKTLIARAVANET 144 (197)
Q Consensus 120 ~~~ill~G~~GtGKT~la~ala~~~ 144 (197)
+.-++|.||+|+||+++++++-...
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhc
Confidence 3457899999999999999997654
No 444
>PRK05480 uridine/cytidine kinase; Provisional
Probab=97.34 E-value=0.00032 Score=54.02 Aligned_cols=35 Identities=31% Similarity=0.394 Sum_probs=26.8
Q ss_pred CCCceEEECCCCCcHHHHHHHHHHHhC-CeEEEEec
Q psy6208 119 PPRGILLYGPPGTGKTLIARAVANETG-AFFFLING 153 (197)
Q Consensus 119 ~~~~ill~G~~GtGKT~la~ala~~~~-~~~~~v~~ 153 (197)
.+.-|.|.|++|+|||||+++|+..++ ..+..++.
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~l~~~~~~~i~~ 40 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEELGDESIAVIPQ 40 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhCCCceEEEeC
Confidence 345688999999999999999999883 33444443
No 445
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.34 E-value=0.0029 Score=54.14 Aligned_cols=74 Identities=28% Similarity=0.415 Sum_probs=47.0
Q ss_pred CCCceEEECCCCCcHHHHHHHHHHHh----CCeEEEEechhhhh----------h------cc-C--ccH-HHHHHHHHH
Q psy6208 119 PPRGILLYGPPGTGKTLIARAVANET----GAFFFLINGPEIMS----------K------LA-G--ESE-SNLRKAFEE 174 (197)
Q Consensus 119 ~~~~ill~G~~GtGKT~la~ala~~~----~~~~~~v~~~~~~~----------~------~~-~--~~~-~~~~~~~~~ 174 (197)
.+..+++.|++|+|||+++..+|..+ +.++..++|..... . +. + ... ......++.
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~~~~~~~~P~~i~~~al~~ 177 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPAAIEQLKVLGQQVGVPVFALGKGQSPVEIARRALEY 177 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccchHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHHH
Confidence 35568999999999999988887663 56777777642211 0 00 0 111 222344555
Q ss_pred HhcCCCeEEEEcccCccC
Q psy6208 175 ADKNSPSIIFIDELDAIA 192 (197)
Q Consensus 175 a~~~~~~vl~lDeid~l~ 192 (197)
+.....++|++|=...+.
T Consensus 178 ~~~~~~DvVIIDTaGr~~ 195 (428)
T TIGR00959 178 AKENGFDVVIVDTAGRLQ 195 (428)
T ss_pred HHhcCCCEEEEeCCCccc
Confidence 555567899999877654
No 446
>PLN02459 probable adenylate kinase
Probab=97.33 E-value=0.00029 Score=56.20 Aligned_cols=30 Identities=23% Similarity=0.319 Sum_probs=25.6
Q ss_pred CceEEECCCCCcHHHHHHHHHHHhCCeEEE
Q psy6208 121 RGILLYGPPGTGKTLIARAVANETGAFFFL 150 (197)
Q Consensus 121 ~~ill~G~~GtGKT~la~ala~~~~~~~~~ 150 (197)
..++|.||||+||+++++.+++.++...+.
T Consensus 30 ~~ii~~G~PGsGK~T~a~~la~~~~~~~is 59 (261)
T PLN02459 30 VNWVFLGCPGVGKGTYASRLSKLLGVPHIA 59 (261)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCcEEe
Confidence 458889999999999999999998865543
No 447
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=97.33 E-value=0.00029 Score=54.00 Aligned_cols=29 Identities=28% Similarity=0.310 Sum_probs=25.4
Q ss_pred CCceEEECCCCCcHHHHHHHHHHHhCCeE
Q psy6208 120 PRGILLYGPPGTGKTLIARAVANETGAFF 148 (197)
Q Consensus 120 ~~~ill~G~~GtGKT~la~ala~~~~~~~ 148 (197)
+.-+++.|.||+|||++++.++.+++..+
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~~~~~ 31 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHRAIDI 31 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCeE
Confidence 34689999999999999999999988755
No 448
>PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.33 E-value=0.0016 Score=52.39 Aligned_cols=92 Identities=22% Similarity=0.338 Sum_probs=55.4
Q ss_pred cccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhhhccCccHH
Q psy6208 87 DIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESES 166 (197)
Q Consensus 87 ~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~~~~~~~v~~~~~~~~~~~~~~~ 166 (197)
+++-.+++++.+.+...-. -.+.++.||.|..|+||+++++..|...+..++.+....-.+ ..+...
T Consensus 9 ~lVlf~~ai~hi~ri~RvL-----------~~~~Gh~LLvG~~GsGr~sl~rLaa~i~~~~~~~i~~~~~y~--~~~f~~ 75 (268)
T PF12780_consen 9 NLVLFDEAIEHIARISRVL-----------SQPRGHALLVGVGGSGRQSLARLAAFICGYEVFQIEITKGYS--IKDFKE 75 (268)
T ss_dssp -----HHHHHHHHHHHHHH-----------CSTTEEEEEECTTTSCHHHHHHHHHHHTTEEEE-TTTSTTTH--HHHHHH
T ss_pred ceeeHHHHHHHHHHHHHHH-----------cCCCCCeEEecCCCccHHHHHHHHHHHhccceEEEEeeCCcC--HHHHHH
Confidence 4566667777766654332 134567999999999999999988888888888776432111 111234
Q ss_pred HHHHHHHHHh-cCCCeEEEEcccCcc
Q psy6208 167 NLRKAFEEAD-KNSPSIIFIDELDAI 191 (197)
Q Consensus 167 ~~~~~~~~a~-~~~~~vl~lDeid~l 191 (197)
.++.++..+- .+.+.+++++|-+-.
T Consensus 76 dLk~~~~~ag~~~~~~vfll~d~qi~ 101 (268)
T PF12780_consen 76 DLKKALQKAGIKGKPTVFLLTDSQIV 101 (268)
T ss_dssp HHHHHHHHHHCS-S-EEEEEECCCSS
T ss_pred HHHHHHHHHhccCCCeEEEecCcccc
Confidence 5555555443 466889999886543
No 449
>PRK12338 hypothetical protein; Provisional
Probab=97.32 E-value=0.00029 Score=57.76 Aligned_cols=30 Identities=30% Similarity=0.378 Sum_probs=26.4
Q ss_pred CCceEEECCCCCcHHHHHHHHHHHhCCeEE
Q psy6208 120 PRGILLYGPPGTGKTLIARAVANETGAFFF 149 (197)
Q Consensus 120 ~~~ill~G~~GtGKT~la~ala~~~~~~~~ 149 (197)
+.-+++.|+||+|||++|+++|..++...+
T Consensus 4 p~ii~i~G~sGsGKST~a~~la~~l~~~~~ 33 (319)
T PRK12338 4 PYVILIGSASGIGKSTIASELARTLNIKHL 33 (319)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHCCCeEE
Confidence 456899999999999999999999987654
No 450
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=97.32 E-value=0.00076 Score=50.76 Aligned_cols=28 Identities=21% Similarity=0.433 Sum_probs=24.1
Q ss_pred CCCCCceEEECCCCCcHHHHHHHHHHHh
Q psy6208 117 VKPPRGILLYGPPGTGKTLIARAVANET 144 (197)
Q Consensus 117 ~~~~~~ill~G~~GtGKT~la~ala~~~ 144 (197)
+.+...+.|.||+|+|||+|++.++...
T Consensus 22 i~~G~~~~l~G~nGsGKStLl~~i~G~~ 49 (180)
T cd03214 22 IEAGEIVGILGPNGAGKSTLLKTLAGLL 49 (180)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3556678999999999999999998764
No 451
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=97.31 E-value=0.00028 Score=49.95 Aligned_cols=30 Identities=43% Similarity=0.537 Sum_probs=24.4
Q ss_pred CCCCceEEECCCCCcHHHHHHHHHHHhCCe
Q psy6208 118 KPPRGILLYGPPGTGKTLIARAVANETGAF 147 (197)
Q Consensus 118 ~~~~~ill~G~~GtGKT~la~ala~~~~~~ 147 (197)
+...-|+|.|+-|+|||++++++++.++..
T Consensus 13 ~~g~vi~L~GdLGaGKTtf~r~l~~~lg~~ 42 (123)
T PF02367_consen 13 KPGDVILLSGDLGAGKTTFVRGLARALGID 42 (123)
T ss_dssp SS-EEEEEEESTTSSHHHHHHHHHHHTT--
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHcCCC
Confidence 445669999999999999999999998653
No 452
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=97.31 E-value=0.00027 Score=57.88 Aligned_cols=33 Identities=24% Similarity=0.404 Sum_probs=28.3
Q ss_pred CceEEECCCCCcHHHHHHHHHHHhCCeEEEEec
Q psy6208 121 RGILLYGPPGTGKTLIARAVANETGAFFFLING 153 (197)
Q Consensus 121 ~~ill~G~~GtGKT~la~ala~~~~~~~~~v~~ 153 (197)
.-++|.||+|+|||+++..+|..++..++..++
T Consensus 5 ~~i~i~GptgsGKt~la~~la~~~~~~iis~Ds 37 (307)
T PRK00091 5 KVIVIVGPTASGKTALAIELAKRLNGEIISADS 37 (307)
T ss_pred eEEEEECCCCcCHHHHHHHHHHhCCCcEEeccc
Confidence 468999999999999999999998877665554
No 453
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=97.31 E-value=0.00037 Score=52.59 Aligned_cols=35 Identities=29% Similarity=0.440 Sum_probs=27.3
Q ss_pred eEEECCCCCcHHHHHHHHHHHh---CCeEEEEechhhh
Q psy6208 123 ILLYGPPGTGKTLIARAVANET---GAFFFLINGPEIM 157 (197)
Q Consensus 123 ill~G~~GtGKT~la~ala~~~---~~~~~~v~~~~~~ 157 (197)
|.|.|+||+|||++++.++..+ +.++..++..++.
T Consensus 2 i~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~~Ddf~ 39 (179)
T cd02028 2 VGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLDDYY 39 (179)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEehhhcc
Confidence 6799999999999999999887 3455556555444
No 454
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.31 E-value=0.0012 Score=51.64 Aligned_cols=24 Identities=29% Similarity=0.259 Sum_probs=20.9
Q ss_pred CCCceEEECCCCCcHHHHHHHHHH
Q psy6208 119 PPRGILLYGPPGTGKTLIARAVAN 142 (197)
Q Consensus 119 ~~~~ill~G~~GtGKT~la~ala~ 142 (197)
....++|.||.|+|||++.+.++.
T Consensus 30 ~g~~~~itG~N~~GKStll~~i~~ 53 (222)
T cd03287 30 GGYCQIITGPNMGGKSSYIRQVAL 53 (222)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 345689999999999999999976
No 455
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=97.30 E-value=0.00046 Score=53.77 Aligned_cols=39 Identities=26% Similarity=0.273 Sum_probs=31.1
Q ss_pred CCCCCCceEEECCCCCcHHHHHHHHHHHh---CCeEEEEech
Q psy6208 116 GVKPPRGILLYGPPGTGKTLIARAVANET---GAFFFLINGP 154 (197)
Q Consensus 116 ~~~~~~~ill~G~~GtGKT~la~ala~~~---~~~~~~v~~~ 154 (197)
|+.....+++.|+||+|||+++..++... +.++++++..
T Consensus 12 Gi~~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e 53 (224)
T TIGR03880 12 GFPEGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLE 53 (224)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 45667779999999999999999887543 7788888754
No 456
>PLN02165 adenylate isopentenyltransferase
Probab=97.30 E-value=0.00025 Score=58.43 Aligned_cols=34 Identities=15% Similarity=0.289 Sum_probs=28.0
Q ss_pred CCCceEEECCCCCcHHHHHHHHHHHhCCeEEEEe
Q psy6208 119 PPRGILLYGPPGTGKTLIARAVANETGAFFFLIN 152 (197)
Q Consensus 119 ~~~~ill~G~~GtGKT~la~ala~~~~~~~~~v~ 152 (197)
.+..++|.||+|+|||+|+..+|..++..++..+
T Consensus 42 ~g~iivIiGPTGSGKStLA~~LA~~l~~eIIsaD 75 (334)
T PLN02165 42 KDKVVVIMGATGSGKSRLSVDLATRFPSEIINSD 75 (334)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHcCCceecCC
Confidence 3446899999999999999999999887655543
No 457
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=97.29 E-value=0.00092 Score=54.16 Aligned_cols=77 Identities=21% Similarity=0.119 Sum_probs=45.7
Q ss_pred CCCCceEEECCCCCcHHHHHHHHHHHhCCeEEEEec--------hhhhhhc-cCc----cHHHHHHHHHHHh----cCCC
Q psy6208 118 KPPRGILLYGPPGTGKTLIARAVANETGAFFFLING--------PEIMSKL-AGE----SESNLRKAFEEAD----KNSP 180 (197)
Q Consensus 118 ~~~~~ill~G~~GtGKT~la~ala~~~~~~~~~v~~--------~~~~~~~-~~~----~~~~~~~~~~~a~----~~~~ 180 (197)
.-+..+||+||.|+||+.+|.++|+.+-+.-..-.| +++.--. .+. .-..++.+.+.+. .+..
T Consensus 17 rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~~~~I~idqiR~l~~~~~~~p~e~~~ 96 (290)
T PRK05917 17 KVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGKGRLHSIETPRAIKKQIWIHPYESPY 96 (290)
T ss_pred CcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCCCCcCcHHHHHHHHHHHhhCccCCCc
Confidence 446689999999999999999999887432100011 1110000 000 1234444444432 2445
Q ss_pred eEEEEcccCccCcc
Q psy6208 181 SIIFIDELDAIAPK 194 (197)
Q Consensus 181 ~vl~lDeid~l~~~ 194 (197)
.|++||++|.|...
T Consensus 97 kv~ii~~ad~mt~~ 110 (290)
T PRK05917 97 KIYIIHEADRMTLD 110 (290)
T ss_pred eEEEEechhhcCHH
Confidence 79999999998753
No 458
>PTZ00293 thymidine kinase; Provisional
Probab=97.29 E-value=0.00056 Score=52.85 Aligned_cols=67 Identities=25% Similarity=0.276 Sum_probs=39.8
Q ss_pred eEEECCCCCcHHH-HHHHHHHHh--CCeEEEEechhhhhhc-----c----CccH-----HHHHHHHHHHhcCCCeEEEE
Q psy6208 123 ILLYGPPGTGKTL-IARAVANET--GAFFFLINGPEIMSKL-----A----GESE-----SNLRKAFEEADKNSPSIIFI 185 (197)
Q Consensus 123 ill~G~~GtGKT~-la~ala~~~--~~~~~~v~~~~~~~~~-----~----~~~~-----~~~~~~~~~a~~~~~~vl~l 185 (197)
-+++||.++|||+ |++++.+.. +.+++.+.... -+.+ + |... .....+++.. ...++|+|
T Consensus 7 ~vi~GpMfSGKTteLLr~i~~y~~ag~kv~~~kp~~-DtR~~~~~~I~Sh~g~~~~a~~v~~~~e~~~~~--~~~dvI~I 83 (211)
T PTZ00293 7 SVIIGPMFSGKTTELMRLVKRFTYSEKKCVVIKYSK-DTRYSDEQNISSHDKQMLKAIKVSKLKEVLETA--KNYDVIAI 83 (211)
T ss_pred EEEECCCCChHHHHHHHHHHHHHHcCCceEEEEecc-cccCCCCCcEEecCCCcceeEEcCCHHHHHHhc--cCCCEEEE
Confidence 5889999999999 999887654 55555443311 1111 0 1000 1223333333 34689999
Q ss_pred cccCccC
Q psy6208 186 DELDAIA 192 (197)
Q Consensus 186 Deid~l~ 192 (197)
||++++.
T Consensus 84 DEaQFf~ 90 (211)
T PTZ00293 84 DEGQFFP 90 (211)
T ss_pred EchHhhH
Confidence 9999884
No 459
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=97.29 E-value=0.00021 Score=54.50 Aligned_cols=23 Identities=39% Similarity=0.616 Sum_probs=21.4
Q ss_pred eEEECCCCCcHHHHHHHHHHHhC
Q psy6208 123 ILLYGPPGTGKTLIARAVANETG 145 (197)
Q Consensus 123 ill~G~~GtGKT~la~ala~~~~ 145 (197)
|.|.|++|+|||++|+.|+..++
T Consensus 2 IgI~G~sgSGKTTla~~L~~~L~ 24 (194)
T PF00485_consen 2 IGIAGPSGSGKTTLAKRLAQILN 24 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 57899999999999999999985
No 460
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=97.29 E-value=0.0003 Score=53.49 Aligned_cols=30 Identities=17% Similarity=0.242 Sum_probs=24.3
Q ss_pred eEEECCCCCcHHHHHHHHHHHh-CCeEEEEe
Q psy6208 123 ILLYGPPGTGKTLIARAVANET-GAFFFLIN 152 (197)
Q Consensus 123 ill~G~~GtGKT~la~ala~~~-~~~~~~v~ 152 (197)
|.+.|+||+|||++|+.++..+ +..++..+
T Consensus 2 i~i~G~sgsGKTtla~~l~~~~~~~~~i~~D 32 (187)
T cd02024 2 VGISGVTNSGKTTLAKLLQRILPNCCVIHQD 32 (187)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeEEccc
Confidence 6789999999999999999998 45554433
No 461
>KOG2543|consensus
Probab=97.28 E-value=0.0014 Score=54.62 Aligned_cols=60 Identities=22% Similarity=0.321 Sum_probs=45.6
Q ss_pred cccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHhCCeEEEEechhh
Q psy6208 87 DIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEI 156 (197)
Q Consensus 87 ~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~~~~~~~v~~~~~ 156 (197)
.+.+.+.+++.+...+-.- . -.-|..++|+|.+|||||.+.+++-+.++.+.++++|-+.
T Consensus 7 ~v~~Re~qi~~L~~Llg~~---~-------~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~~~vw~n~~ec 66 (438)
T KOG2543|consen 7 NVPCRESQIRRLKSLLGNN---S-------CTIPSIVHIYGHSGTGKTYLVRQLLRKLNLENVWLNCVEC 66 (438)
T ss_pred CccchHHHHHHHHHHhCCC---C-------cccceeEEEeccCCCchhHHHHHHHhhcCCcceeeehHHh
Confidence 3556677777777765321 0 1245667999999999999999999999999999998554
No 462
>PTZ00202 tuzin; Provisional
Probab=97.28 E-value=0.0011 Score=56.70 Aligned_cols=61 Identities=13% Similarity=0.214 Sum_probs=47.4
Q ss_pred CcccccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHhCCeEEEEech
Q psy6208 84 GYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGP 154 (197)
Q Consensus 84 ~~~~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~~~~~~~v~~~ 154 (197)
...++.|.+....++...+... ....+.-+.|.|++|+|||++++.+...++...+++|..
T Consensus 260 ~~~~FVGReaEla~Lr~VL~~~----------d~~~privvLtG~~G~GKTTLlR~~~~~l~~~qL~vNpr 320 (550)
T PTZ00202 260 VIRQFVSREAEESWVRQVLRRL----------DTAHPRIVVFTGFRGCGKSSLCRSAVRKEGMPAVFVDVR 320 (550)
T ss_pred CccCCCCcHHHHHHHHHHHhcc----------CCCCceEEEEECCCCCCHHHHHHHHHhcCCceEEEECCC
Confidence 3467899999999998887642 112344678999999999999999999888777766643
No 463
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.28 E-value=0.0011 Score=51.02 Aligned_cols=23 Identities=26% Similarity=0.375 Sum_probs=20.0
Q ss_pred CCceEEECCCCCcHHHHHHHHHH
Q psy6208 120 PRGILLYGPPGTGKTLIARAVAN 142 (197)
Q Consensus 120 ~~~ill~G~~GtGKT~la~ala~ 142 (197)
...++|.||+|+|||++++.++.
T Consensus 29 ~~~~~l~G~n~~GKstll~~i~~ 51 (204)
T cd03282 29 SRFHIITGPNMSGKSTYLKQIAL 51 (204)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45689999999999999998863
No 464
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=97.27 E-value=0.0028 Score=56.98 Aligned_cols=32 Identities=31% Similarity=0.470 Sum_probs=25.2
Q ss_pred CceEEECCCCCcHHHHHHHHHHHh---CCeEEEEe
Q psy6208 121 RGILLYGPPGTGKTLIARAVANET---GAFFFLIN 152 (197)
Q Consensus 121 ~~ill~G~~GtGKT~la~ala~~~---~~~~~~v~ 152 (197)
..++|+||||||||+++.++...+ +.+++.+.
T Consensus 174 ~~~lI~GpPGTGKT~t~~~ii~~~~~~g~~VLv~a 208 (637)
T TIGR00376 174 DLFLIHGPPGTGKTRTLVELIRQLVKRGLRVLVTA 208 (637)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEc
Confidence 468899999999999888876654 55666655
No 465
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=97.26 E-value=0.0014 Score=63.64 Aligned_cols=37 Identities=43% Similarity=0.558 Sum_probs=33.7
Q ss_pred CCCceEEECCCCCcHHHHHHHHHHHhCCeEEEEechh
Q psy6208 119 PPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPE 155 (197)
Q Consensus 119 ~~~~ill~G~~GtGKT~la~ala~~~~~~~~~v~~~~ 155 (197)
-.++++|-|.||+|||+|+.|+|+..|..++.+|.++
T Consensus 1542 v~kpilLEGsPGVGKTSlItaLAr~tG~kliRINLSe 1578 (4600)
T COG5271 1542 VGKPILLEGSPGVGKTSLITALARKTGKKLIRINLSE 1578 (4600)
T ss_pred cCCceeecCCCCccHHHHHHHHHHHhcCceEEeeccc
Confidence 3568999999999999999999999999999998654
No 466
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.26 E-value=0.00091 Score=52.42 Aligned_cols=28 Identities=21% Similarity=0.328 Sum_probs=22.6
Q ss_pred CCCCCceEEECCCCCcHHHHHHHHHHHh
Q psy6208 117 VKPPRGILLYGPPGTGKTLIARAVANET 144 (197)
Q Consensus 117 ~~~~~~ill~G~~GtGKT~la~ala~~~ 144 (197)
+.....+-+.||+|+|||+|.+.+...+
T Consensus 31 V~~Gei~~iiGgSGsGKStlLr~I~Gll 58 (263)
T COG1127 31 VPRGEILAILGGSGSGKSTLLRLILGLL 58 (263)
T ss_pred ecCCcEEEEECCCCcCHHHHHHHHhccC
Confidence 3455667899999999999999996543
No 467
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=97.26 E-value=0.0003 Score=50.71 Aligned_cols=22 Identities=36% Similarity=0.693 Sum_probs=20.2
Q ss_pred eEEECCCCCcHHHHHHHHHHHh
Q psy6208 123 ILLYGPPGTGKTLIARAVANET 144 (197)
Q Consensus 123 ill~G~~GtGKT~la~ala~~~ 144 (197)
++|.||+|+|||++++.+++..
T Consensus 2 i~i~GpsGsGKstl~~~L~~~~ 23 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEEF 23 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhcC
Confidence 6789999999999999999874
No 468
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=97.26 E-value=0.00093 Score=55.52 Aligned_cols=39 Identities=18% Similarity=0.164 Sum_probs=29.3
Q ss_pred CCCCCceEEECCCCCcHHHHHHHHHHHh---------CCeEEEEechh
Q psy6208 117 VKPPRGILLYGPPGTGKTLIARAVANET---------GAFFFLINGPE 155 (197)
Q Consensus 117 ~~~~~~ill~G~~GtGKT~la~ala~~~---------~~~~~~v~~~~ 155 (197)
+....-..|+|+||||||.|+..+|-.. +..++|++...
T Consensus 123 i~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~ 170 (344)
T PLN03187 123 IETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEG 170 (344)
T ss_pred CCCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCC
Confidence 4555557899999999999999886321 35788888644
No 469
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=97.25 E-value=0.00077 Score=55.37 Aligned_cols=78 Identities=23% Similarity=0.366 Sum_probs=46.0
Q ss_pred CCCCceEEECCCCCcHHHHHHHHHHH---hCCeEEEEechhhhhh----------------ccCccHHHHHHHHHHHhcC
Q psy6208 118 KPPRGILLYGPPGTGKTLIARAVANE---TGAFFFLINGPEIMSK----------------LAGESESNLRKAFEEADKN 178 (197)
Q Consensus 118 ~~~~~ill~G~~GtGKT~la~ala~~---~~~~~~~v~~~~~~~~----------------~~~~~~~~~~~~~~~a~~~ 178 (197)
+..+-+-|+||+|+|||+|+-.+..+ .+..+++++++.-+.. .+...+..+..+-...+.+
T Consensus 51 p~G~ivEi~G~~ssGKttLaL~~ia~~q~~g~~~a~ID~e~~ld~~~a~~lGvdl~rllv~~P~~~E~al~~~e~lirsg 130 (322)
T PF00154_consen 51 PRGRIVEIYGPESSGKTTLALHAIAEAQKQGGICAFIDAEHALDPEYAESLGVDLDRLLVVQPDTGEQALWIAEQLIRSG 130 (322)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHHTT-EEEEEESSS---HHHHHHTT--GGGEEEEE-SSHHHHHHHHHHHHHTT
T ss_pred ccCceEEEeCCCCCchhhhHHHHHHhhhcccceeEEecCcccchhhHHHhcCccccceEEecCCcHHHHHHHHHHHhhcc
Confidence 33444679999999999998766443 4788888887443211 1122333333333334556
Q ss_pred CCeEEEEcccCccCccc
Q psy6208 179 SPSIIFIDELDAIAPKR 195 (197)
Q Consensus 179 ~~~vl~lDeid~l~~~r 195 (197)
..+++++|-+..|.|+.
T Consensus 131 ~~~lVVvDSv~al~p~~ 147 (322)
T PF00154_consen 131 AVDLVVVDSVAALVPKA 147 (322)
T ss_dssp SESEEEEE-CTT-B-HH
T ss_pred cccEEEEecCcccCCHH
Confidence 67899999999998864
No 470
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=97.25 E-value=0.00049 Score=54.05 Aligned_cols=38 Identities=26% Similarity=0.425 Sum_probs=30.8
Q ss_pred CCCCCCceEEECCCCCcHHHHHHHHHHHh----CCeEEEEec
Q psy6208 116 GVKPPRGILLYGPPGTGKTLIARAVANET----GAFFFLING 153 (197)
Q Consensus 116 ~~~~~~~ill~G~~GtGKT~la~ala~~~----~~~~~~v~~ 153 (197)
|+.+..-++|.|+||+|||+++..++... +.++++++.
T Consensus 9 Gl~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~ 50 (242)
T cd00984 9 GLQPGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSL 50 (242)
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeC
Confidence 45666778999999999999999886554 778888874
No 471
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=97.25 E-value=0.00049 Score=56.36 Aligned_cols=39 Identities=23% Similarity=0.331 Sum_probs=30.8
Q ss_pred CCCCCceEEECCCCCcHHHHHHHHHHHh---------CCeEEEEechh
Q psy6208 117 VKPPRGILLYGPPGTGKTLIARAVANET---------GAFFFLINGPE 155 (197)
Q Consensus 117 ~~~~~~ill~G~~GtGKT~la~ala~~~---------~~~~~~v~~~~ 155 (197)
+....-+.|+||||+|||+++..++... +..++|++..+
T Consensus 92 i~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~ 139 (310)
T TIGR02236 92 IETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTEN 139 (310)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCC
Confidence 5555667899999999999999997653 34788888655
No 472
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.24 E-value=0.00045 Score=53.01 Aligned_cols=23 Identities=48% Similarity=0.697 Sum_probs=21.4
Q ss_pred ceEEECCCCCcHHHHHHHHHHHh
Q psy6208 122 GILLYGPPGTGKTLIARAVANET 144 (197)
Q Consensus 122 ~ill~G~~GtGKT~la~ala~~~ 144 (197)
-++++|+||+|||++|+-+++.+
T Consensus 3 LiIlTGyPgsGKTtfakeLak~L 25 (261)
T COG4088 3 LIILTGYPGSGKTTFAKELAKEL 25 (261)
T ss_pred eEEEecCCCCCchHHHHHHHHHH
Confidence 37899999999999999999988
No 473
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=97.24 E-value=0.00045 Score=52.01 Aligned_cols=27 Identities=33% Similarity=0.481 Sum_probs=23.9
Q ss_pred CceEEECCCCCcHHHHHHHHHHHhCCe
Q psy6208 121 RGILLYGPPGTGKTLIARAVANETGAF 147 (197)
Q Consensus 121 ~~ill~G~~GtGKT~la~ala~~~~~~ 147 (197)
..+.+.|++|+|||+++++++..++..
T Consensus 4 e~i~l~G~sGsGKSTl~~~la~~l~~~ 30 (176)
T PRK09825 4 ESYILMGVSGSGKSLIGSKIAALFSAK 30 (176)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCCE
Confidence 458899999999999999999988764
No 474
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.24 E-value=0.0017 Score=50.70 Aligned_cols=24 Identities=25% Similarity=0.402 Sum_probs=20.3
Q ss_pred CCCceEEECCCCCcHHHHHHHHHH
Q psy6208 119 PPRGILLYGPPGTGKTLIARAVAN 142 (197)
Q Consensus 119 ~~~~ill~G~~GtGKT~la~ala~ 142 (197)
...-++|+||.|+|||++++.++.
T Consensus 29 ~~~~~~l~G~n~~GKstll~~i~~ 52 (222)
T cd03285 29 KSRFLIITGPNMGGKSTYIRQIGV 52 (222)
T ss_pred CCeEEEEECCCCCChHHHHHHHHH
Confidence 344689999999999999998864
No 475
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=97.23 E-value=0.00058 Score=51.42 Aligned_cols=33 Identities=27% Similarity=0.339 Sum_probs=26.0
Q ss_pred eEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhh
Q psy6208 123 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMS 158 (197)
Q Consensus 123 ill~G~~GtGKT~la~ala~~~~~~~~~v~~~~~~~ 158 (197)
|.|+|++|+|||++++.+++ .|.+++. +.++..
T Consensus 2 i~itG~~gsGKst~~~~l~~-~g~~~i~--~D~~~~ 34 (179)
T cd02022 2 IGLTGGIGSGKSTVAKLLKE-LGIPVID--ADKIAH 34 (179)
T ss_pred EEEECCCCCCHHHHHHHHHH-CCCCEEe--cCHHHH
Confidence 68999999999999999998 7766644 444433
No 476
>PRK00300 gmk guanylate kinase; Provisional
Probab=97.23 E-value=0.0004 Score=53.22 Aligned_cols=27 Identities=30% Similarity=0.481 Sum_probs=23.8
Q ss_pred CCCceEEECCCCCcHHHHHHHHHHHhC
Q psy6208 119 PPRGILLYGPPGTGKTLIARAVANETG 145 (197)
Q Consensus 119 ~~~~ill~G~~GtGKT~la~ala~~~~ 145 (197)
++..++|.||+|+|||+|++.++...+
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 456789999999999999999998764
No 477
>TIGR00174 miaA tRNA isopentenyltransferase (miaA). Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.
Probab=97.23 E-value=0.00037 Score=56.43 Aligned_cols=31 Identities=26% Similarity=0.486 Sum_probs=27.4
Q ss_pred eEEECCCCCcHHHHHHHHHHHhCCeEEEEec
Q psy6208 123 ILLYGPPGTGKTLIARAVANETGAFFFLING 153 (197)
Q Consensus 123 ill~G~~GtGKT~la~ala~~~~~~~~~v~~ 153 (197)
++|.||+|+|||+++..++...+..++.++.
T Consensus 2 i~i~G~t~~GKs~la~~l~~~~~~~iis~Ds 32 (287)
T TIGR00174 2 IFIMGPTAVGKSQLAIQLAKKLNAEIISVDS 32 (287)
T ss_pred EEEECCCCCCHHHHHHHHHHhCCCcEEEech
Confidence 6899999999999999999998877776654
No 478
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=97.22 E-value=0.001 Score=49.52 Aligned_cols=33 Identities=24% Similarity=0.384 Sum_probs=22.8
Q ss_pred CceEEECCCCCcHHH-HHHHHHHHhC----CeEEEEec
Q psy6208 121 RGILLYGPPGTGKTL-IARAVANETG----AFFFLING 153 (197)
Q Consensus 121 ~~ill~G~~GtGKT~-la~ala~~~~----~~~~~v~~ 153 (197)
..+++.|++|+|||. ++..+..... ..++.+..
T Consensus 25 ~~~~i~~~~GsGKT~~~~~~~~~~~~~~~~~~~l~~~p 62 (201)
T smart00487 25 RDVILAAPTGSGKTLAALLPALEALKRGKGKRVLVLVP 62 (201)
T ss_pred CcEEEECCCCCchhHHHHHHHHHHhcccCCCcEEEEeC
Confidence 689999999999999 5555554442 34555543
No 479
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=97.21 E-value=0.0005 Score=52.46 Aligned_cols=22 Identities=32% Similarity=0.519 Sum_probs=20.4
Q ss_pred eEEECCCCCcHHHHHHHHHHHh
Q psy6208 123 ILLYGPPGTGKTLIARAVANET 144 (197)
Q Consensus 123 ill~G~~GtGKT~la~ala~~~ 144 (197)
+.|.||+|+|||+++++++..+
T Consensus 2 igi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5789999999999999999886
No 480
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=97.20 E-value=0.001 Score=58.22 Aligned_cols=39 Identities=36% Similarity=0.417 Sum_probs=30.9
Q ss_pred CCCCCCceEEECCCCCcHHHHHHHHHHHh---CCeEEEEech
Q psy6208 116 GVKPPRGILLYGPPGTGKTLIARAVANET---GAFFFLINGP 154 (197)
Q Consensus 116 ~~~~~~~ill~G~~GtGKT~la~ala~~~---~~~~~~v~~~ 154 (197)
|+.....++|+|+||+|||+++..++... +.++++++..
T Consensus 269 G~~~g~~~li~G~~G~GKT~l~~~~~~~~~~~g~~~~yis~e 310 (509)
T PRK09302 269 GFFRGSIILVSGATGTGKTLLASKFAEAACRRGERCLLFAFE 310 (509)
T ss_pred CCCCCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEec
Confidence 35667778999999999999999987654 6677777643
No 481
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=97.20 E-value=0.00046 Score=42.70 Aligned_cols=23 Identities=30% Similarity=0.527 Sum_probs=20.7
Q ss_pred ceEEECCCCCcHHHHHHHHHHHh
Q psy6208 122 GILLYGPPGTGKTLIARAVANET 144 (197)
Q Consensus 122 ~ill~G~~GtGKT~la~ala~~~ 144 (197)
..+|+|++|+|||++..|+.-.+
T Consensus 25 ~tli~G~nGsGKSTllDAi~~~L 47 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQTVL 47 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999997655
No 482
>PRK14737 gmk guanylate kinase; Provisional
Probab=97.20 E-value=0.00033 Score=53.23 Aligned_cols=26 Identities=27% Similarity=0.479 Sum_probs=22.5
Q ss_pred CCCceEEECCCCCcHHHHHHHHHHHh
Q psy6208 119 PPRGILLYGPPGTGKTLIARAVANET 144 (197)
Q Consensus 119 ~~~~ill~G~~GtGKT~la~ala~~~ 144 (197)
.+.-++|.||+|+|||+|++.+.+..
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcC
Confidence 35568999999999999999997764
No 483
>PRK10646 ADP-binding protein; Provisional
Probab=97.19 E-value=0.0012 Score=48.47 Aligned_cols=29 Identities=34% Similarity=0.515 Sum_probs=25.2
Q ss_pred CCCCceEEECCCCCcHHHHHHHHHHHhCC
Q psy6208 118 KPPRGILLYGPPGTGKTLIARAVANETGA 146 (197)
Q Consensus 118 ~~~~~ill~G~~GtGKT~la~ala~~~~~ 146 (197)
.++.-|+|.|+=|+|||++++++++.++.
T Consensus 26 ~~g~vi~L~GdLGaGKTtf~rgl~~~Lg~ 54 (153)
T PRK10646 26 DGATVIYLYGDLGAGKTTFSRGFLQALGH 54 (153)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 34556899999999999999999999865
No 484
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=97.19 E-value=0.0055 Score=49.64 Aligned_cols=74 Identities=18% Similarity=0.253 Sum_probs=43.2
Q ss_pred CCCCceEEECCCCCcHHHHHHHHHHHhC--CeEEEEech-------hhhhhc------c--C----ccHHHHHHHHHHHh
Q psy6208 118 KPPRGILLYGPPGTGKTLIARAVANETG--AFFFLINGP-------EIMSKL------A--G----ESESNLRKAFEEAD 176 (197)
Q Consensus 118 ~~~~~ill~G~~GtGKT~la~ala~~~~--~~~~~v~~~-------~~~~~~------~--~----~~~~~~~~~~~~a~ 176 (197)
.....+-|.|+||+|||+|+..+...+. ..+..+... +..... . | .....+...+....
T Consensus 102 ~~~~~v~l~G~pGsGKTTLl~~l~~~l~~~~~~~VI~gD~~t~~Da~rI~~~g~pvvqi~tG~~Chl~a~mv~~Al~~L~ 181 (290)
T PRK10463 102 RKQLVLNLVSSPGSGKTTLLTETLMRLKDSVPCAVIEGDQQTVNDAARIRATGTPAIQVNTGKGCHLDAQMIADAAPRLP 181 (290)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhccCCCEEEECCCcCcHHHHHHHHhcCCcEEEecCCCCCcCcHHHHHHHHHHHh
Confidence 3345577999999999999999988752 233333211 010000 0 0 01223444445444
Q ss_pred cCCCeEEEEcccCcc
Q psy6208 177 KNSPSIIFIDELDAI 191 (197)
Q Consensus 177 ~~~~~vl~lDeid~l 191 (197)
....++|||+.+..|
T Consensus 182 ~~~~d~liIEnvGnL 196 (290)
T PRK10463 182 LDDNGILFIENVGNL 196 (290)
T ss_pred hcCCcEEEEECCCCc
Confidence 455689999999875
No 485
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.18 E-value=0.002 Score=50.78 Aligned_cols=28 Identities=25% Similarity=0.451 Sum_probs=23.3
Q ss_pred CCCCceEEECCCCCcHHHHHHHHHHHhC
Q psy6208 118 KPPRGILLYGPPGTGKTLIARAVANETG 145 (197)
Q Consensus 118 ~~~~~ill~G~~GtGKT~la~ala~~~~ 145 (197)
..+-.+++.|++|||||+++..+...+.
T Consensus 11 ~~~fr~viIG~sGSGKT~li~~lL~~~~ 38 (241)
T PF04665_consen 11 KDPFRMVIIGKSGSGKTTLIKSLLYYLR 38 (241)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHhhc
Confidence 4455799999999999999999876663
No 486
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=97.18 E-value=0.0066 Score=49.79 Aligned_cols=76 Identities=24% Similarity=0.305 Sum_probs=54.8
Q ss_pred CCCceEEECCCCCcHHHHHHHHHHHh---CCeEEEEechhhhh--------------------hccCccHHHHHHHHHHH
Q psy6208 119 PPRGILLYGPPGTGKTLIARAVANET---GAFFFLINGPEIMS--------------------KLAGESESNLRKAFEEA 175 (197)
Q Consensus 119 ~~~~ill~G~~GtGKT~la~ala~~~---~~~~~~v~~~~~~~--------------------~~~~~~~~~~~~~~~~a 175 (197)
.+.-+|+.|-.|+||||.+-.+|..+ |.+++...|..+.. ..-+....-.....+.|
T Consensus 138 ~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpAaVafDAi~~A 217 (340)
T COG0552 138 KPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPAAVAFDAIQAA 217 (340)
T ss_pred CcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCCCcHHHHHHHHHHH
Confidence 35668999999999999999998877 67777766655531 11111223445666777
Q ss_pred hcCCCeEEEEcccCccCcc
Q psy6208 176 DKNSPSIIFIDELDAIAPK 194 (197)
Q Consensus 176 ~~~~~~vl~lDeid~l~~~ 194 (197)
.....++|++|=+++|-.+
T Consensus 218 kar~~DvvliDTAGRLhnk 236 (340)
T COG0552 218 KARGIDVVLIDTAGRLHNK 236 (340)
T ss_pred HHcCCCEEEEeCcccccCc
Confidence 7777899999999988765
No 487
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=97.18 E-value=0.0032 Score=58.97 Aligned_cols=72 Identities=17% Similarity=0.092 Sum_probs=42.7
Q ss_pred ceEEECCCCCcHHHHHHHHHHHh---CCeEEEEechhhh----hhccCccHHHHHHHHHHHh-----cCCCeEEEEcccC
Q psy6208 122 GILLYGPPGTGKTLIARAVANET---GAFFFLINGPEIM----SKLAGESESNLRKAFEEAD-----KNSPSIIFIDELD 189 (197)
Q Consensus 122 ~ill~G~~GtGKT~la~ala~~~---~~~~~~v~~~~~~----~~~~~~~~~~~~~~~~~a~-----~~~~~vl~lDeid 189 (197)
-++|.|++|||||++++++.... |..++.+..+... ..-.|.....+..++.... -...++|||||+.
T Consensus 364 v~vv~G~AGTGKTT~l~~~~~~~e~~G~~V~~~ApTGkAA~~L~e~tGi~a~TI~sll~~~~~~~~~l~~~~vlIVDEAS 443 (988)
T PRK13889 364 LGVVVGYAGTGKSAMLGVAREAWEAAGYEVRGAALSGIAAENLEGGSGIASRTIASLEHGWGQGRDLLTSRDVLVIDEAG 443 (988)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEecCcHHHHHHHhhccCcchhhHHHHHhhhcccccccccCcEEEEECcc
Confidence 56899999999999998875543 6666655433222 1212222334444332211 1234799999998
Q ss_pred ccCc
Q psy6208 190 AIAP 193 (197)
Q Consensus 190 ~l~~ 193 (197)
.+..
T Consensus 444 Mv~~ 447 (988)
T PRK13889 444 MVGT 447 (988)
T ss_pred cCCH
Confidence 7653
No 488
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=97.17 E-value=0.00032 Score=52.61 Aligned_cols=23 Identities=35% Similarity=0.676 Sum_probs=20.9
Q ss_pred ceEEECCCCCcHHHHHHHHHHHh
Q psy6208 122 GILLYGPPGTGKTLIARAVANET 144 (197)
Q Consensus 122 ~ill~G~~GtGKT~la~ala~~~ 144 (197)
-++|.||+|+|||++++.++...
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHccC
Confidence 58899999999999999999865
No 489
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=97.17 E-value=0.00028 Score=58.51 Aligned_cols=26 Identities=38% Similarity=0.530 Sum_probs=21.6
Q ss_pred CCCCceEEECCCCCcHHHHHHHHHHH
Q psy6208 118 KPPRGILLYGPPGTGKTLIARAVANE 143 (197)
Q Consensus 118 ~~~~~ill~G~~GtGKT~la~ala~~ 143 (197)
.+..-+.|.||+||||||+.+.||..
T Consensus 29 ~~Gef~~lLGPSGcGKTTlLR~IAGf 54 (352)
T COG3842 29 KKGEFVTLLGPSGCGKTTLLRMIAGF 54 (352)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 34445779999999999999999864
No 490
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=97.16 E-value=0.0025 Score=52.04 Aligned_cols=35 Identities=26% Similarity=0.394 Sum_probs=26.6
Q ss_pred CCCCceEEECCCCCcHHHHHHHHHHHh---CCeEEEEe
Q psy6208 118 KPPRGILLYGPPGTGKTLIARAVANET---GAFFFLIN 152 (197)
Q Consensus 118 ~~~~~ill~G~~GtGKT~la~ala~~~---~~~~~~v~ 152 (197)
.....+.|.|++|+|||+++..++..+ +..+..++
T Consensus 32 ~~~~~i~i~G~~G~GKttl~~~l~~~~~~~~~~v~~i~ 69 (300)
T TIGR00750 32 GNAHRVGITGTPGAGKSTLLEALGMELRRRGLKVAVIA 69 (300)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 445668999999999999999998765 44444433
No 491
>PRK13808 adenylate kinase; Provisional
Probab=97.16 E-value=0.00043 Score=57.07 Aligned_cols=30 Identities=30% Similarity=0.572 Sum_probs=26.1
Q ss_pred ceEEECCCCCcHHHHHHHHHHHhCCeEEEE
Q psy6208 122 GILLYGPPGTGKTLIARAVANETGAFFFLI 151 (197)
Q Consensus 122 ~ill~G~~GtGKT~la~ala~~~~~~~~~v 151 (197)
.|+|+||||+|||++++.|+..++..++.+
T Consensus 2 rIiv~GpPGSGK~T~a~~LA~~ygl~~is~ 31 (333)
T PRK13808 2 RLILLGPPGAGKGTQAQRLVQQYGIVQLST 31 (333)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCceecc
Confidence 489999999999999999999998755544
No 492
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=97.16 E-value=0.0013 Score=49.71 Aligned_cols=76 Identities=22% Similarity=0.348 Sum_probs=42.2
Q ss_pred CCCceEEECCCCCcHHHHHHHHHHHh-------------CCeEEEEechhhh----hhc---cCc---------------
Q psy6208 119 PPRGILLYGPPGTGKTLIARAVANET-------------GAFFFLINGPEIM----SKL---AGE--------------- 163 (197)
Q Consensus 119 ~~~~ill~G~~GtGKT~la~ala~~~-------------~~~~~~v~~~~~~----~~~---~~~--------------- 163 (197)
...-.+|.|++|+|||+++..++... +.++++++.+.-. ..+ ...
T Consensus 31 ~g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~~ 110 (193)
T PF13481_consen 31 RGELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDSESQIARRLRALLQDYDDDANLFFVDLSNW 110 (193)
T ss_dssp TTSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-HHHHHHHHHHHHTTS-HHHHHHHHHH--E
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCCHHHHHHHHHHHhcccCCccceEEeecccc
Confidence 34458999999999999999887654 2367777643211 000 000
Q ss_pred --------------cHHHHHHHHHHHhc-CCCeEEEEcccCccCcc
Q psy6208 164 --------------SESNLRKAFEEADK-NSPSIIFIDELDAIAPK 194 (197)
Q Consensus 164 --------------~~~~~~~~~~~a~~-~~~~vl~lDeid~l~~~ 194 (197)
....+..+.+.... ..+++|+||-+..+...
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~lvviD~l~~~~~~ 156 (193)
T PF13481_consen 111 GCIRLFEPDSGGPLLDEDLEELEAALKELYGPDLVVIDPLQSLHDG 156 (193)
T ss_dssp -EE---TTS---TTSHHHHHHHHHHHTT----SEEEEE-GGGG--S
T ss_pred ccceeeecccccccchHHHHHHHHHHhhcCCCcEEEEcCHHHHhcC
Confidence 11223344444555 56899999999888764
No 493
>PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging []. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription
Probab=97.16 E-value=0.0011 Score=53.64 Aligned_cols=19 Identities=37% Similarity=0.807 Sum_probs=17.3
Q ss_pred eEEECCCCCcHHHHHHHHH
Q psy6208 123 ILLYGPPGTGKTLIARAVA 141 (197)
Q Consensus 123 ill~G~~GtGKT~la~ala 141 (197)
.++|||+|+|||.|+|.+.
T Consensus 90 ~~VYGPTG~GKSqLlRNLi 108 (369)
T PF02456_consen 90 GVVYGPTGSGKSQLLRNLI 108 (369)
T ss_pred EEEECCCCCCHHHHHHHhh
Confidence 5899999999999999874
No 494
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=97.15 E-value=0.00069 Score=55.72 Aligned_cols=40 Identities=25% Similarity=0.330 Sum_probs=31.5
Q ss_pred CCCCCCceEEECCCCCcHHHHHHHHHHHh---------CCeEEEEechh
Q psy6208 116 GVKPPRGILLYGPPGTGKTLIARAVANET---------GAFFFLINGPE 155 (197)
Q Consensus 116 ~~~~~~~ill~G~~GtGKT~la~ala~~~---------~~~~~~v~~~~ 155 (197)
|+..+.-+.|+||||+|||.++..++... +..++|+++.+
T Consensus 98 Gi~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~ 146 (317)
T PRK04301 98 GIETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEG 146 (317)
T ss_pred CccCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCC
Confidence 35556668999999999999999998653 34788888755
No 495
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=97.15 E-value=0.0045 Score=47.25 Aligned_cols=24 Identities=21% Similarity=0.290 Sum_probs=20.9
Q ss_pred CCceEEECCCCCcHHHHHHHHHHH
Q psy6208 120 PRGILLYGPPGTGKTLIARAVANE 143 (197)
Q Consensus 120 ~~~ill~G~~GtGKT~la~ala~~ 143 (197)
...+.|.|++|+|||+|+.++...
T Consensus 41 ~~~I~iiG~~g~GKStLl~~l~~~ 64 (204)
T cd01878 41 IPTVALVGYTNAGKSTLFNALTGA 64 (204)
T ss_pred CCeEEEECCCCCCHHHHHHHHhcc
Confidence 357999999999999999998764
No 496
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=97.14 E-value=0.00031 Score=48.41 Aligned_cols=24 Identities=33% Similarity=0.475 Sum_probs=21.3
Q ss_pred CCCCceEEECCCCCcHHHHHHHHH
Q psy6208 118 KPPRGILLYGPPGTGKTLIARAVA 141 (197)
Q Consensus 118 ~~~~~ill~G~~GtGKT~la~ala 141 (197)
.....+.|.||+|+|||+|++++.
T Consensus 13 ~~ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 13 YGKVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred cCCEEEEEEcCCCCCHHHHHHHhh
Confidence 445679999999999999999987
No 497
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=97.14 E-value=0.00041 Score=53.47 Aligned_cols=25 Identities=36% Similarity=0.462 Sum_probs=22.0
Q ss_pred CceEEECCCCCcHHHHHHHHHHHhC
Q psy6208 121 RGILLYGPPGTGKTLIARAVANETG 145 (197)
Q Consensus 121 ~~ill~G~~GtGKT~la~ala~~~~ 145 (197)
.-+.|.|++|+|||||+++++..++
T Consensus 7 ~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 7 IIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3477999999999999999998775
No 498
>PRK06761 hypothetical protein; Provisional
Probab=97.14 E-value=0.00053 Score=55.38 Aligned_cols=29 Identities=24% Similarity=0.322 Sum_probs=24.5
Q ss_pred CceEEECCCCCcHHHHHHHHHHHhCCeEE
Q psy6208 121 RGILLYGPPGTGKTLIARAVANETGAFFF 149 (197)
Q Consensus 121 ~~ill~G~~GtGKT~la~ala~~~~~~~~ 149 (197)
.-++|.|+||+|||++++.+++.+....+
T Consensus 4 ~lIvI~G~~GsGKTTla~~L~~~L~~~g~ 32 (282)
T PRK06761 4 KLIIIEGLPGFGKSTTAKMLNDILSQNGI 32 (282)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCcCce
Confidence 35899999999999999999999865433
No 499
>KOG0058|consensus
Probab=97.14 E-value=0.0014 Score=58.52 Aligned_cols=27 Identities=33% Similarity=0.598 Sum_probs=23.5
Q ss_pred CCCCCceEEECCCCCcHHHHHHHHHHH
Q psy6208 117 VKPPRGILLYGPPGTGKTLIARAVANE 143 (197)
Q Consensus 117 ~~~~~~ill~G~~GtGKT~la~ala~~ 143 (197)
++++..+-|.||+|+|||+++..+-+.
T Consensus 491 i~pGe~vALVGPSGsGKSTiasLL~rf 517 (716)
T KOG0058|consen 491 IRPGEVVALVGPSGSGKSTIASLLLRF 517 (716)
T ss_pred eCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 577788999999999999999988554
No 500
>PRK07667 uridine kinase; Provisional
Probab=97.14 E-value=0.0007 Score=51.67 Aligned_cols=35 Identities=17% Similarity=0.203 Sum_probs=26.8
Q ss_pred CceEEECCCCCcHHHHHHHHHHHh---CCeEEEEechh
Q psy6208 121 RGILLYGPPGTGKTLIARAVANET---GAFFFLINGPE 155 (197)
Q Consensus 121 ~~ill~G~~GtGKT~la~ala~~~---~~~~~~v~~~~ 155 (197)
.-|.|.|++|+|||++++.++..+ +.++..++..+
T Consensus 18 ~iIgI~G~~gsGKStla~~L~~~l~~~~~~~~~i~~Dd 55 (193)
T PRK07667 18 FILGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHIDD 55 (193)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEEcCc
Confidence 357899999999999999999876 34555555444
Done!