Query psy6208
Match_columns 197
No_of_seqs 356 out of 2360
Neff 9.1
Searched_HMMs 29240
Date Fri Aug 16 20:30:39 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6208.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6208hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3cf2_A TER ATPase, transitiona 100.0 1.2E-32 4.2E-37 245.9 16.3 189 8-196 126-314 (806)
2 4b4t_J 26S protease regulatory 100.0 2.1E-29 7.1E-34 209.4 13.0 119 78-196 140-258 (405)
3 3hu3_A Transitional endoplasmi 100.0 2.9E-27 9.9E-32 202.5 19.7 189 8-196 126-314 (489)
4 4b4t_I 26S protease regulatory 100.0 2.8E-28 9.5E-33 203.4 13.0 120 77-196 173-292 (437)
5 4b4t_L 26S protease subunit RP 100.0 5E-28 1.7E-32 203.6 13.2 119 78-196 173-291 (437)
6 4b4t_H 26S protease regulatory 100.0 5.9E-28 2E-32 203.2 12.6 119 78-196 201-319 (467)
7 4b4t_M 26S protease regulatory 100.0 5E-28 1.7E-32 203.5 11.7 120 77-196 172-291 (434)
8 4b4t_K 26S protease regulatory 99.9 1.7E-27 5.9E-32 200.0 12.0 119 78-196 164-282 (428)
9 1ypw_A Transitional endoplasmi 99.9 7E-26 2.4E-30 204.2 12.8 186 11-196 129-314 (806)
10 3cf2_A TER ATPase, transitiona 99.9 2.9E-24 9.9E-29 192.1 9.9 117 80-196 471-587 (806)
11 3cf0_A Transitional endoplasmi 99.9 6.1E-23 2.1E-27 165.9 10.5 116 80-195 9-124 (301)
12 1xwi_A SKD1 protein; VPS4B, AA 99.9 2.6E-22 8.8E-27 163.7 12.9 116 80-196 6-122 (322)
13 3eie_A Vacuolar protein sortin 99.9 2.5E-22 8.5E-27 163.7 12.1 115 80-195 12-126 (322)
14 3h4m_A Proteasome-activating n 99.9 1.1E-21 3.8E-26 156.6 11.8 116 80-195 11-126 (285)
15 2qp9_X Vacuolar protein sortin 99.9 1.2E-21 4E-26 161.8 11.4 116 79-195 44-159 (355)
16 2qz4_A Paraplegin; AAA+, SPG7, 99.9 4.3E-21 1.5E-25 151.1 11.8 113 82-195 2-114 (262)
17 2ce7_A Cell division protein F 99.8 1.1E-20 3.7E-25 161.0 13.5 116 80-196 10-125 (476)
18 2x8a_A Nuclear valosin-contain 99.8 5.9E-21 2E-25 152.4 11.0 116 80-195 4-119 (274)
19 1lv7_A FTSH; alpha/beta domain 99.8 1.7E-20 5.7E-25 147.9 11.1 116 80-196 6-121 (257)
20 3b9p_A CG5977-PA, isoform A; A 99.8 2.6E-20 8.9E-25 149.6 12.2 116 80-196 15-130 (297)
21 2zan_A Vacuolar protein sortin 99.8 9E-21 3.1E-25 160.8 9.9 116 80-196 128-244 (444)
22 3d8b_A Fidgetin-like protein 1 99.8 2.9E-20 9.9E-25 153.5 10.6 115 80-195 78-192 (357)
23 3vfd_A Spastin; ATPase, microt 99.8 3.8E-20 1.3E-24 154.4 11.0 115 80-195 109-223 (389)
24 2r62_A Cell division protease 99.8 8.8E-21 3E-25 150.2 3.8 115 80-195 5-119 (268)
25 2dhr_A FTSH; AAA+ protein, hex 99.8 6.7E-19 2.3E-23 150.7 11.1 115 81-196 26-140 (499)
26 1ixz_A ATP-dependent metallopr 99.8 5.1E-18 1.7E-22 133.4 11.6 115 80-195 10-124 (254)
27 2c9o_A RUVB-like 1; hexameric 99.7 1.5E-18 5.3E-23 147.5 8.1 109 79-196 30-143 (456)
28 1ypw_A Transitional endoplasmi 99.7 4.6E-19 1.6E-23 159.9 1.3 116 81-196 472-587 (806)
29 1iy2_A ATP-dependent metallopr 99.7 4.1E-17 1.4E-21 130.0 11.7 114 81-195 35-148 (278)
30 3t15_A Ribulose bisphosphate c 99.7 1.7E-17 5.8E-22 133.5 7.7 80 116-195 32-115 (293)
31 2z4s_A Chromosomal replication 99.7 9.7E-17 3.3E-21 135.8 8.8 172 3-194 30-209 (440)
32 3syl_A Protein CBBX; photosynt 99.6 1.3E-15 4.4E-20 122.6 11.8 105 87-195 32-146 (309)
33 2p65_A Hypothetical protein PF 99.6 9.1E-15 3.1E-19 108.5 10.4 101 81-194 17-130 (187)
34 1jbk_A CLPB protein; beta barr 99.6 1.2E-14 4E-19 108.1 10.8 101 81-194 17-130 (195)
35 3hws_A ATP-dependent CLP prote 99.6 1.7E-15 5.9E-20 125.0 5.9 109 87-195 16-132 (363)
36 3n70_A Transport activator; si 99.6 3.2E-15 1.1E-19 108.0 5.6 88 87-195 2-92 (145)
37 1l8q_A Chromosomal replication 99.5 2.3E-14 8E-19 116.3 9.2 104 79-194 4-113 (324)
38 3co5_A Putative two-component 99.5 2E-15 6.7E-20 108.9 2.4 87 87-195 5-91 (143)
39 1d2n_A N-ethylmaleimide-sensit 99.5 5.8E-14 2E-18 111.3 11.0 104 85-194 32-139 (272)
40 3pfi_A Holliday junction ATP-d 99.5 7E-14 2.4E-18 113.9 11.1 100 79-194 22-121 (338)
41 1ofh_A ATP-dependent HSL prote 99.5 2E-14 6.7E-19 115.4 7.6 110 86-195 15-132 (310)
42 1sxj_A Activator 1 95 kDa subu 99.5 1.3E-14 4.3E-19 125.2 4.8 120 76-195 29-164 (516)
43 1um8_A ATP-dependent CLP prote 99.5 1.3E-13 4.6E-18 114.1 10.8 108 87-194 22-152 (376)
44 3pvs_A Replication-associated 99.5 2.7E-13 9.4E-18 114.8 12.1 98 78-195 18-122 (447)
45 1hqc_A RUVB; extended AAA-ATPa 99.5 8.3E-14 2.8E-18 112.6 8.1 100 80-194 6-105 (324)
46 3u61_B DNA polymerase accessor 99.5 2.5E-13 8.5E-18 110.1 10.8 99 75-192 15-118 (324)
47 3uk6_A RUVB-like 2; hexameric 99.5 1.2E-13 4.2E-18 113.6 7.9 71 79-157 37-109 (368)
48 2bjv_A PSP operon transcriptio 99.4 2.2E-13 7.5E-18 107.5 8.1 98 83-194 3-115 (265)
49 1qvr_A CLPB protein; coiled co 99.4 6.2E-13 2.1E-17 120.8 11.5 102 81-195 165-279 (854)
50 1r6b_X CLPA protein; AAA+, N-t 99.4 1.2E-12 4E-17 117.5 11.5 101 82-195 182-294 (758)
51 3te6_A Regulatory protein SIR3 99.4 5.7E-13 1.9E-17 108.0 8.3 96 88-192 22-145 (318)
52 2v1u_A Cell division control p 99.4 1.3E-12 4.3E-17 107.5 9.3 109 77-194 10-145 (387)
53 3m6a_A ATP-dependent protease 99.4 5.1E-13 1.7E-17 115.8 7.0 103 85-195 80-191 (543)
54 2chg_A Replication factor C sm 99.4 5.5E-12 1.9E-16 95.6 11.9 98 78-194 9-117 (226)
55 1g41_A Heat shock protein HSLU 99.4 7.5E-13 2.6E-17 111.6 6.3 102 86-191 15-119 (444)
56 3cmw_A Protein RECA, recombina 99.3 1.1E-12 3.7E-17 124.8 7.1 116 80-195 1014-1176(1706)
57 1ojl_A Transcriptional regulat 99.3 7.9E-13 2.7E-17 106.7 4.8 95 86-194 2-111 (304)
58 2qby_B CDC6 homolog 3, cell di 99.3 3.3E-12 1.1E-16 105.3 8.4 101 84-194 18-148 (384)
59 3pxg_A Negative regulator of g 99.3 3.5E-12 1.2E-16 108.6 8.8 91 80-186 174-274 (468)
60 2qby_A CDC6 homolog 1, cell di 99.3 8.6E-12 2.9E-16 102.4 10.3 108 78-194 12-143 (386)
61 3pxi_A Negative regulator of g 99.3 5.1E-12 1.8E-16 113.4 9.0 101 86-194 491-594 (758)
62 3bos_A Putative DNA replicatio 99.3 1.2E-11 4E-16 95.3 9.4 91 81-194 23-119 (242)
63 4fcw_A Chaperone protein CLPB; 99.3 1.4E-11 4.7E-16 99.0 9.3 105 86-194 17-134 (311)
64 1iqp_A RFCS; clamp loader, ext 99.3 1.8E-11 6.1E-16 98.6 9.6 104 76-194 15-125 (327)
65 1sxj_B Activator 1 37 kDa subu 99.3 1.8E-11 6.3E-16 98.4 9.6 98 77-193 12-121 (323)
66 1fnn_A CDC6P, cell division co 99.2 7.7E-11 2.6E-15 97.1 12.6 105 79-192 10-138 (389)
67 3pxi_A Negative regulator of g 99.2 1.5E-11 5.2E-16 110.3 8.8 91 80-186 174-274 (758)
68 1sxj_D Activator 1 41 kDa subu 99.2 8E-12 2.7E-16 101.9 6.4 100 76-194 27-148 (353)
69 1njg_A DNA polymerase III subu 99.2 4.3E-11 1.5E-15 91.6 10.1 98 78-193 15-140 (250)
70 3ec2_A DNA replication protein 99.2 5.7E-12 1.9E-16 93.7 4.9 99 81-191 5-112 (180)
71 1r6b_X CLPA protein; AAA+, N-t 99.2 2.1E-11 7.1E-16 109.4 9.4 100 87-194 459-572 (758)
72 2chq_A Replication factor C sm 99.2 1.1E-11 3.8E-16 99.5 6.3 101 79-194 10-117 (319)
73 2w58_A DNAI, primosome compone 99.2 8E-12 2.7E-16 94.5 4.9 101 82-193 21-129 (202)
74 1jr3_A DNA polymerase III subu 99.2 4.9E-11 1.7E-15 97.9 8.4 98 78-193 8-133 (373)
75 1g8p_A Magnesium-chelatase 38 99.2 2.8E-11 9.6E-16 98.6 6.5 54 80-146 18-71 (350)
76 1qvr_A CLPB protein; coiled co 99.1 4.2E-11 1.4E-15 108.8 6.9 104 85-194 557-675 (854)
77 1in4_A RUVB, holliday junction 99.1 4E-10 1.4E-14 91.9 11.0 96 82-193 21-116 (334)
78 2r44_A Uncharacterized protein 99.1 3E-11 1E-15 98.1 4.1 92 84-194 25-124 (331)
79 2qgz_A Helicase loader, putati 99.1 9.5E-11 3.3E-15 94.7 6.6 100 82-193 120-228 (308)
80 1sxj_C Activator 1 40 kDa subu 99.1 5.5E-10 1.9E-14 91.1 11.2 99 76-193 15-124 (340)
81 3nbx_X ATPase RAVA; AAA+ ATPas 99.1 1.1E-10 3.7E-15 100.1 5.0 93 86-194 22-124 (500)
82 1sxj_E Activator 1 40 kDa subu 99.0 2.7E-10 9.4E-15 93.0 5.9 54 78-144 6-60 (354)
83 2kjq_A DNAA-related protein; s 99.0 3.5E-10 1.2E-14 81.9 5.5 61 119-194 35-98 (149)
84 1w5s_A Origin recognition comp 98.9 3.8E-09 1.3E-13 87.6 9.0 108 79-193 15-152 (412)
85 1ny5_A Transcriptional regulat 98.8 3.4E-09 1.2E-13 88.1 5.3 96 85-194 136-246 (387)
86 2vhj_A Ntpase P4, P4; non- hyd 98.8 2.9E-09 9.7E-14 86.1 4.4 75 118-194 121-197 (331)
87 2gno_A DNA polymerase III, gam 98.8 2.4E-08 8.2E-13 80.4 8.8 87 90-194 1-97 (305)
88 3qwz_A Transitional endoplasmi 98.8 1.5E-08 5E-13 77.2 6.5 81 10-90 131-211 (211)
89 1a5t_A Delta prime, HOLB; zinc 98.7 8.9E-08 3E-12 77.9 10.3 88 91-193 7-122 (334)
90 2qen_A Walker-type ATPase; unk 98.7 1.3E-07 4.6E-12 76.3 11.3 56 83-155 9-64 (350)
91 3dzd_A Transcriptional regulat 98.7 2E-08 6.8E-13 83.0 6.2 96 86-195 129-238 (368)
92 2fna_A Conserved hypothetical 98.6 2.3E-07 7.7E-12 75.1 11.0 56 83-155 10-65 (357)
93 3k1j_A LON protease, ATP-depen 98.6 2.4E-08 8.3E-13 87.5 5.2 53 78-145 33-85 (604)
94 3cmu_A Protein RECA, recombina 98.6 8.8E-08 3E-12 92.7 9.3 85 110-194 1414-1520(2050)
95 1tue_A Replication protein E1; 98.6 3.4E-08 1.1E-12 74.9 4.5 33 117-149 55-87 (212)
96 3f9v_A Minichromosome maintena 98.6 2.2E-09 7.4E-14 93.9 -2.6 103 87-194 296-406 (595)
97 2r2a_A Uncharacterized protein 98.5 7.2E-08 2.5E-12 73.0 3.6 73 122-195 7-103 (199)
98 2cvh_A DNA repair and recombin 98.3 2.6E-06 8.9E-11 64.4 8.4 39 117-155 17-55 (220)
99 1ye8_A Protein THEP1, hypothet 98.3 1.6E-06 5.3E-11 64.4 6.9 26 122-147 2-27 (178)
100 2zr9_A Protein RECA, recombina 98.3 2E-06 6.8E-11 70.5 7.5 77 117-193 58-153 (349)
101 3hr8_A Protein RECA; alpha and 98.3 2.2E-06 7.5E-11 70.4 7.5 77 117-193 58-153 (356)
102 1xp8_A RECA protein, recombina 98.2 2.8E-06 9.5E-11 70.0 7.7 77 117-193 71-166 (366)
103 2w0m_A SSO2452; RECA, SSPF, un 98.2 2E-06 6.7E-11 65.4 6.4 37 117-153 20-59 (235)
104 4akg_A Glutathione S-transfera 98.2 2.1E-06 7E-11 85.5 8.0 70 119-194 1266-1351(2695)
105 3upu_A ATP-dependent DNA helic 98.2 1.7E-06 5.7E-11 73.3 6.2 55 76-144 14-69 (459)
106 1qhx_A CPT, protein (chloramph 98.2 1.9E-06 6.5E-11 63.2 5.3 35 121-155 4-38 (178)
107 1u94_A RECA protein, recombina 98.2 4E-06 1.4E-10 68.8 7.5 77 117-193 60-155 (356)
108 3cmu_A Protein RECA, recombina 98.2 1.5E-06 5.3E-11 84.2 5.7 79 116-194 1077-1174(2050)
109 2b8t_A Thymidine kinase; deoxy 98.2 3.1E-06 1.1E-10 65.1 6.3 72 121-193 13-103 (223)
110 3jvv_A Twitching mobility prot 98.2 2E-06 7E-11 70.6 5.5 71 119-189 122-206 (356)
111 4akg_A Glutathione S-transfera 98.1 2.6E-06 9E-11 84.8 6.7 67 120-193 645-711 (2695)
112 1n0w_A DNA repair protein RAD5 98.1 4.1E-06 1.4E-10 64.2 6.2 77 117-193 21-133 (243)
113 3vaa_A Shikimate kinase, SK; s 98.1 2.6E-06 9E-11 63.9 4.0 35 118-152 23-57 (199)
114 3trf_A Shikimate kinase, SK; a 98.0 3E-06 1E-10 62.5 3.8 33 120-152 5-37 (185)
115 1w4r_A Thymidine kinase; type 98.0 2.9E-06 1E-10 63.7 3.6 69 121-191 21-103 (195)
116 1svm_A Large T antigen; AAA+ f 98.0 1.1E-05 3.7E-10 66.7 7.2 67 115-193 164-230 (377)
117 1v5w_A DMC1, meiotic recombina 98.0 1.3E-05 4.4E-10 65.4 7.6 40 116-155 118-166 (343)
118 2z43_A DNA repair and recombin 98.0 6.9E-06 2.4E-10 66.5 5.6 40 116-155 103-151 (324)
119 2orw_A Thymidine kinase; TMTK, 98.0 2.3E-06 7.7E-11 63.8 2.4 32 121-152 4-38 (184)
120 2rhm_A Putative kinase; P-loop 98.0 5.8E-06 2E-10 61.2 4.5 34 118-151 3-36 (193)
121 3io5_A Recombination and repai 98.0 2.5E-05 8.4E-10 63.0 8.2 76 117-193 26-125 (333)
122 3iij_A Coilin-interacting nucl 98.0 6.1E-06 2.1E-10 60.7 4.4 34 119-152 10-43 (180)
123 2eyu_A Twitching motility prot 98.0 9.3E-06 3.2E-10 63.8 5.7 72 118-189 23-108 (261)
124 2p5t_B PEZT; postsegregational 98.0 4.9E-05 1.7E-09 59.1 9.7 39 118-156 30-68 (253)
125 2r8r_A Sensor protein; KDPD, P 98.0 1.8E-05 6.3E-10 60.7 6.9 34 120-153 6-42 (228)
126 1z6t_A APAF-1, apoptotic prote 97.9 5.1E-05 1.7E-09 65.8 10.4 49 83-142 121-169 (591)
127 3kb2_A SPBC2 prophage-derived 97.9 6.6E-06 2.3E-10 59.7 4.1 31 122-152 3-33 (173)
128 2fz4_A DNA repair protein RAD2 97.9 4.7E-05 1.6E-09 58.8 9.0 33 121-153 109-141 (237)
129 2dr3_A UPF0273 protein PH0284; 97.9 2.3E-05 7.9E-10 60.1 7.2 37 117-153 20-59 (247)
130 3a4m_A L-seryl-tRNA(SEC) kinas 97.9 3.5E-05 1.2E-09 60.3 8.2 38 120-157 4-44 (260)
131 2ehv_A Hypothetical protein PH 97.9 2.5E-05 8.6E-10 60.0 7.2 36 117-152 27-66 (251)
132 1kag_A SKI, shikimate kinase I 97.9 1.1E-05 3.8E-10 58.7 4.7 30 120-149 4-33 (173)
133 2ewv_A Twitching motility prot 97.9 1.2E-05 4E-10 66.4 5.2 73 117-189 133-219 (372)
134 2iyv_A Shikimate kinase, SK; t 97.9 8E-06 2.7E-10 60.2 3.8 31 122-152 4-34 (184)
135 1gvn_B Zeta; postsegregational 97.9 2.4E-05 8.3E-10 62.2 6.9 38 119-156 32-69 (287)
136 1u0j_A DNA replication protein 97.9 1.4E-05 4.8E-10 62.9 5.3 27 119-145 103-129 (267)
137 1zp6_A Hypothetical protein AT 97.9 8.1E-06 2.8E-10 60.4 3.8 40 117-156 6-45 (191)
138 1y63_A LMAJ004144AAA protein; 97.9 8.4E-06 2.9E-10 60.4 3.8 34 119-152 9-43 (184)
139 1via_A Shikimate kinase; struc 97.9 1.1E-05 3.6E-10 59.2 4.2 30 122-151 6-35 (175)
140 1zuh_A Shikimate kinase; alpha 97.9 8.6E-06 2.9E-10 59.2 3.7 33 120-152 7-39 (168)
141 3tiw_A Transitional endoplasmi 97.9 4.1E-05 1.4E-09 57.1 7.1 59 10-68 128-186 (187)
142 3dm5_A SRP54, signal recogniti 97.9 8.1E-05 2.8E-09 62.7 9.7 74 120-193 100-196 (443)
143 1vma_A Cell division protein F 97.8 5.8E-05 2E-09 60.6 8.3 73 119-191 103-198 (306)
144 2ze6_A Isopentenyl transferase 97.8 1.2E-05 4.2E-10 62.7 4.2 32 122-153 3-34 (253)
145 1g5t_A COB(I)alamin adenosyltr 97.8 4.5E-05 1.5E-09 57.3 7.1 32 120-151 28-62 (196)
146 3lw7_A Adenylate kinase relate 97.8 1.2E-05 4.2E-10 58.1 3.5 29 122-151 3-31 (179)
147 2cdn_A Adenylate kinase; phosp 97.8 1.6E-05 5.3E-10 59.6 4.1 32 120-151 20-51 (201)
148 1e6c_A Shikimate kinase; phosp 97.8 1.4E-05 4.9E-10 58.0 3.7 30 122-151 4-33 (173)
149 3kl4_A SRP54, signal recogniti 97.8 8E-05 2.7E-09 62.6 8.6 73 120-192 97-192 (433)
150 4a74_A DNA repair and recombin 97.8 2.9E-05 9.9E-10 58.9 5.4 38 117-154 22-68 (231)
151 2c95_A Adenylate kinase 1; tra 97.8 1.6E-05 5.5E-10 58.9 3.9 33 119-151 8-40 (196)
152 1tev_A UMP-CMP kinase; ploop, 97.8 1.5E-05 5.1E-10 58.9 3.7 31 120-150 3-33 (196)
153 3tlx_A Adenylate kinase 2; str 97.8 4.1E-05 1.4E-09 59.3 6.2 34 118-151 27-60 (243)
154 3t61_A Gluconokinase; PSI-biol 97.8 2.2E-05 7.4E-10 58.8 4.4 32 120-151 18-49 (202)
155 1aky_A Adenylate kinase; ATP:A 97.8 2.6E-05 9E-10 59.2 4.9 32 120-151 4-35 (220)
156 1pzn_A RAD51, DNA repair and r 97.8 3.8E-05 1.3E-09 62.8 6.0 40 116-155 127-175 (349)
157 1zd8_A GTP:AMP phosphotransfer 97.7 1.6E-05 5.6E-10 60.7 3.5 33 119-151 6-38 (227)
158 3cm0_A Adenylate kinase; ATP-b 97.7 2.4E-05 8.1E-10 57.6 4.2 30 121-150 5-34 (186)
159 2vli_A Antibiotic resistance p 97.7 1.9E-05 6.3E-10 58.0 3.4 30 120-149 5-34 (183)
160 3dl0_A Adenylate kinase; phosp 97.7 1.8E-05 6.3E-10 59.8 3.4 30 122-151 2-31 (216)
161 2pt5_A Shikimate kinase, SK; a 97.7 2.1E-05 7.3E-10 56.9 3.6 30 122-151 2-31 (168)
162 3fb4_A Adenylate kinase; psych 97.7 2E-05 6.8E-10 59.5 3.5 30 122-151 2-31 (216)
163 1qf9_A UMP/CMP kinase, protein 97.7 2.4E-05 8E-10 57.7 3.8 32 120-151 6-37 (194)
164 1ly1_A Polynucleotide kinase; 97.7 2E-05 6.8E-10 57.5 3.4 34 121-156 3-37 (181)
165 3sfz_A APAF-1, apoptotic pepti 97.7 0.00016 5.4E-09 67.4 10.2 50 83-143 121-170 (1249)
166 3e1s_A Exodeoxyribonuclease V, 97.7 1E-05 3.6E-10 70.4 2.1 33 120-152 204-239 (574)
167 1kht_A Adenylate kinase; phosp 97.7 2.7E-05 9.2E-10 57.4 4.0 25 121-145 4-28 (192)
168 2bwj_A Adenylate kinase 5; pho 97.7 2.3E-05 7.8E-10 58.2 3.6 32 120-151 12-43 (199)
169 3lda_A DNA repair protein RAD5 97.7 5.1E-05 1.8E-09 63.2 6.0 40 116-155 174-222 (400)
170 1knq_A Gluconate kinase; ALFA/ 97.7 3.6E-05 1.2E-09 56.1 4.6 31 120-150 8-38 (175)
171 1ak2_A Adenylate kinase isoenz 97.7 4E-05 1.4E-09 58.8 5.0 32 120-151 16-47 (233)
172 4eun_A Thermoresistant glucoki 97.7 4E-05 1.4E-09 57.4 4.9 31 119-149 28-58 (200)
173 2pez_A Bifunctional 3'-phospho 97.7 4.3E-05 1.5E-09 56.0 5.0 37 120-156 5-44 (179)
174 3be4_A Adenylate kinase; malar 97.7 2E-05 6.9E-10 59.9 3.2 31 121-151 6-36 (217)
175 3uie_A Adenylyl-sulfate kinase 97.7 4.5E-05 1.5E-09 57.1 5.0 39 118-156 23-64 (200)
176 2pt7_A CAG-ALFA; ATPase, prote 97.7 3E-05 1E-09 62.9 4.3 72 119-190 170-251 (330)
177 3umf_A Adenylate kinase; rossm 97.7 3.9E-05 1.3E-09 58.6 4.6 38 118-157 27-64 (217)
178 1zak_A Adenylate kinase; ATP:A 97.7 2.9E-05 9.8E-10 59.0 3.9 32 119-150 4-35 (222)
179 1ukz_A Uridylate kinase; trans 97.7 2.9E-05 1E-09 58.0 3.8 32 120-151 15-46 (203)
180 2ga8_A Hypothetical 39.9 kDa p 97.7 2E-05 6.9E-10 64.4 3.0 30 121-150 25-54 (359)
181 1p9r_A General secretion pathw 97.7 0.00015 5.3E-09 60.6 8.4 94 82-189 143-246 (418)
182 2i1q_A DNA repair and recombin 97.6 3.9E-05 1.3E-09 61.8 4.4 40 116-155 94-152 (322)
183 1nks_A Adenylate kinase; therm 97.6 5E-05 1.7E-09 55.9 4.7 35 122-156 3-40 (194)
184 3cmw_A Protein RECA, recombina 97.6 8.6E-05 2.9E-09 71.5 7.1 77 119-195 1430-1525(1706)
185 3sr0_A Adenylate kinase; phosp 97.6 4.7E-05 1.6E-09 57.7 4.4 34 122-157 2-35 (206)
186 3crm_A TRNA delta(2)-isopenten 97.6 4.9E-05 1.7E-09 61.5 4.5 35 120-154 5-39 (323)
187 2a5y_B CED-4; apoptosis; HET: 97.6 0.00023 7.8E-09 61.5 9.0 44 89-142 131-174 (549)
188 3f8t_A Predicted ATPase involv 97.6 4.2E-05 1.4E-09 64.8 4.2 69 121-194 240-315 (506)
189 2pbr_A DTMP kinase, thymidylat 97.6 6.4E-05 2.2E-09 55.4 4.7 31 122-152 2-35 (195)
190 2zts_A Putative uncharacterize 97.6 8.8E-05 3E-09 56.8 5.6 37 117-153 27-67 (251)
191 2jaq_A Deoxyguanosine kinase; 97.6 5.8E-05 2E-09 56.1 4.3 29 122-150 2-30 (205)
192 1cke_A CK, MSSA, protein (cyti 97.6 7.6E-05 2.6E-09 56.6 5.0 30 121-150 6-35 (227)
193 2r6a_A DNAB helicase, replicat 97.6 0.00024 8.4E-09 59.9 8.5 38 116-153 199-240 (454)
194 1e4v_A Adenylate kinase; trans 97.6 5.8E-05 2E-09 57.1 4.1 30 122-151 2-31 (214)
195 3nwj_A ATSK2; P loop, shikimat 97.5 5.2E-05 1.8E-09 59.2 3.7 32 120-151 48-79 (250)
196 2xb4_A Adenylate kinase; ATP-b 97.5 7.4E-05 2.5E-09 57.0 4.5 30 122-151 2-31 (223)
197 2v54_A DTMP kinase, thymidylat 97.5 7.3E-05 2.5E-09 55.7 4.4 33 120-152 4-37 (204)
198 2qor_A Guanylate kinase; phosp 97.5 9E-05 3.1E-09 55.6 4.9 28 118-145 10-37 (204)
199 2z0h_A DTMP kinase, thymidylat 97.5 8.6E-05 2.9E-09 54.9 4.7 30 123-152 3-35 (197)
200 3vkg_A Dynein heavy chain, cyt 97.5 0.00014 4.7E-09 73.5 7.3 67 120-193 604-670 (3245)
201 2if2_A Dephospho-COA kinase; a 97.5 5E-05 1.7E-09 56.8 3.2 30 122-152 3-32 (204)
202 2oap_1 GSPE-2, type II secreti 97.5 5.7E-05 2E-09 64.8 3.9 71 119-189 259-343 (511)
203 2yvu_A Probable adenylyl-sulfa 97.5 0.00016 5.6E-09 53.2 5.7 38 119-156 12-52 (186)
204 1xx6_A Thymidine kinase; NESG, 97.5 6.8E-05 2.3E-09 56.1 3.5 71 121-193 9-95 (191)
205 3foz_A TRNA delta(2)-isopenten 97.5 9.2E-05 3.1E-09 59.5 4.3 35 120-154 10-44 (316)
206 3a8t_A Adenylate isopentenyltr 97.5 6.1E-05 2.1E-09 61.2 3.1 35 120-154 40-74 (339)
207 3r20_A Cytidylate kinase; stru 97.5 0.00012 4.2E-09 56.4 4.7 31 120-150 9-39 (233)
208 3ake_A Cytidylate kinase; CMP 97.4 0.0001 3.5E-09 55.0 4.1 30 122-151 4-33 (208)
209 2grj_A Dephospho-COA kinase; T 97.4 9.6E-05 3.3E-09 55.3 3.6 32 121-152 13-44 (192)
210 2bbw_A Adenylate kinase 4, AK4 97.4 0.00013 4.3E-09 56.4 4.4 30 120-149 27-56 (246)
211 2plr_A DTMP kinase, probable t 97.4 0.0001 3.6E-09 55.0 3.7 26 121-146 5-30 (213)
212 2q6t_A DNAB replication FORK h 97.4 0.00047 1.6E-08 58.0 8.1 38 116-153 196-237 (444)
213 2yhs_A FTSY, cell division pro 97.4 0.00082 2.8E-08 57.3 9.3 34 118-151 291-327 (503)
214 4e22_A Cytidylate kinase; P-lo 97.4 0.00016 5.5E-09 56.2 4.7 30 120-149 27-56 (252)
215 1ex7_A Guanylate kinase; subst 97.4 0.00016 5.5E-09 53.8 4.4 24 121-144 2-25 (186)
216 3exa_A TRNA delta(2)-isopenten 97.4 0.00014 4.6E-09 58.6 4.2 34 121-154 4-37 (322)
217 1kgd_A CASK, peripheral plasma 97.4 0.00013 4.4E-09 53.7 3.8 25 120-144 5-29 (180)
218 1m7g_A Adenylylsulfate kinase; 97.4 0.00017 5.8E-09 54.4 4.5 39 118-156 23-65 (211)
219 2px0_A Flagellar biosynthesis 97.4 0.00051 1.7E-08 54.8 7.5 72 119-192 104-195 (296)
220 1jjv_A Dephospho-COA kinase; P 97.4 0.00011 3.8E-09 55.0 3.4 28 122-150 4-31 (206)
221 1uj2_A Uridine-cytidine kinase 97.3 0.00021 7.3E-09 55.4 5.0 38 120-157 22-67 (252)
222 4b3f_X DNA-binding protein smu 97.3 0.0012 4.1E-08 58.2 10.2 32 122-153 207-241 (646)
223 1uf9_A TT1252 protein; P-loop, 97.3 0.00015 5E-09 53.9 3.8 31 120-151 8-38 (203)
224 1vt4_I APAF-1 related killer D 97.3 0.00063 2.1E-08 63.0 8.5 44 88-143 130-173 (1221)
225 2j41_A Guanylate kinase; GMP, 97.3 0.00013 4.3E-09 54.4 3.4 27 118-144 4-30 (207)
226 2wwf_A Thymidilate kinase, put 97.3 5.7E-05 1.9E-09 56.7 1.3 26 120-145 10-35 (212)
227 1vht_A Dephospho-COA kinase; s 97.3 0.00024 8.2E-09 53.6 4.6 31 120-151 4-34 (218)
228 2bdt_A BH3686; alpha-beta prot 97.3 0.00023 8E-09 52.4 4.3 34 122-156 4-37 (189)
229 3tr0_A Guanylate kinase, GMP k 97.3 0.0002 6.7E-09 53.4 3.9 26 119-144 6-31 (205)
230 3b6e_A Interferon-induced heli 97.3 0.00044 1.5E-08 51.6 5.8 23 121-143 49-71 (216)
231 3d3q_A TRNA delta(2)-isopenten 97.3 0.00017 5.9E-09 58.6 3.8 33 121-153 8-40 (340)
232 3tau_A Guanylate kinase, GMP k 97.3 0.00017 5.7E-09 54.4 3.5 27 119-145 7-33 (208)
233 2qt1_A Nicotinamide riboside k 97.3 0.00012 4.2E-09 54.8 2.6 32 119-150 20-52 (207)
234 3zvl_A Bifunctional polynucleo 97.2 0.00036 1.2E-08 58.3 5.6 30 120-149 258-287 (416)
235 1zu4_A FTSY; GTPase, signal re 97.2 0.0014 4.9E-08 52.8 9.0 36 118-153 103-141 (320)
236 3e70_C DPA, signal recognition 97.2 0.00092 3.1E-08 54.1 7.7 35 118-152 127-164 (328)
237 1q3t_A Cytidylate kinase; nucl 97.2 0.00032 1.1E-08 53.8 4.8 33 118-150 14-46 (236)
238 2h92_A Cytidylate kinase; ross 97.2 0.00034 1.2E-08 52.8 4.8 31 121-151 4-34 (219)
239 2qmh_A HPR kinase/phosphorylas 97.2 0.00015 5E-09 54.7 2.6 32 120-152 34-65 (205)
240 1rz3_A Hypothetical protein rb 97.2 0.0011 3.8E-08 49.5 7.5 35 119-153 21-58 (201)
241 2v3c_C SRP54, signal recogniti 97.2 0.00063 2.2E-08 57.2 6.7 35 120-154 99-136 (432)
242 1nn5_A Similar to deoxythymidy 97.2 0.00022 7.6E-09 53.4 3.6 26 119-144 8-33 (215)
243 1htw_A HI0065; nucleotide-bind 97.2 0.0003 1E-08 51.0 3.9 28 117-144 30-57 (158)
244 1lvg_A Guanylate kinase, GMP k 97.2 0.00024 8.1E-09 53.2 3.5 26 119-144 3-28 (198)
245 2jv2_A Putative uncharacterize 97.2 0.0018 6.3E-08 41.5 7.2 56 10-68 26-81 (83)
246 3eph_A TRNA isopentenyltransfe 97.2 0.00024 8.1E-09 59.1 3.7 33 121-153 3-35 (409)
247 2gza_A Type IV secretion syste 97.2 0.00025 8.6E-09 58.2 3.7 72 118-189 173-262 (361)
248 2j9r_A Thymidine kinase; TK1, 97.1 0.00068 2.3E-08 51.5 5.7 69 123-193 31-115 (214)
249 1ltq_A Polynucleotide kinase; 97.1 0.00028 9.5E-09 55.9 3.8 34 121-156 3-37 (301)
250 3a00_A Guanylate kinase, GMP k 97.1 0.00028 9.5E-09 52.1 3.5 23 122-144 3-25 (186)
251 1z6g_A Guanylate kinase; struc 97.1 0.00029 1E-08 53.5 3.7 28 117-144 20-47 (218)
252 2j37_W Signal recognition part 97.1 0.0017 5.9E-08 55.5 8.8 34 120-153 101-137 (504)
253 2f6r_A COA synthase, bifunctio 97.1 0.00027 9.2E-09 55.9 3.4 31 120-151 75-105 (281)
254 1tf7_A KAIC; homohexamer, hexa 97.1 0.00077 2.6E-08 57.9 6.5 75 117-191 278-383 (525)
255 3c8u_A Fructokinase; YP_612366 97.1 0.00028 9.7E-09 53.0 3.4 27 119-145 21-47 (208)
256 3ney_A 55 kDa erythrocyte memb 97.1 0.0004 1.4E-08 52.2 3.9 27 119-145 18-44 (197)
257 3asz_A Uridine kinase; cytidin 97.1 0.00032 1.1E-08 52.6 3.4 26 120-145 6-31 (211)
258 1c9k_A COBU, adenosylcobinamid 97.1 0.00028 9.6E-09 52.3 3.0 32 123-155 2-33 (180)
259 1cr0_A DNA primase/helicase; R 97.1 0.00056 1.9E-08 54.1 4.9 37 116-152 31-71 (296)
260 2axn_A 6-phosphofructo-2-kinas 97.1 0.002 6.9E-08 55.3 8.5 37 120-156 35-74 (520)
261 1znw_A Guanylate kinase, GMP k 97.0 0.00042 1.5E-08 52.0 3.6 28 117-144 17-44 (207)
262 3fdi_A Uncharacterized protein 97.0 0.00048 1.6E-08 51.8 3.9 30 121-150 7-36 (201)
263 2v9p_A Replication protein E1; 97.0 0.00052 1.8E-08 55.0 4.2 33 116-148 122-154 (305)
264 1s96_A Guanylate kinase, GMP k 97.0 0.00048 1.7E-08 52.5 3.7 28 118-145 14-41 (219)
265 3bh0_A DNAB-like replicative h 97.0 0.00091 3.1E-08 53.7 5.4 38 116-153 64-104 (315)
266 2xau_A PRE-mRNA-splicing facto 97.0 0.0024 8.1E-08 57.5 8.5 63 79-143 68-132 (773)
267 2xxa_A Signal recognition part 97.0 0.0023 8E-08 53.7 7.8 74 119-192 99-196 (433)
268 1x6v_B Bifunctional 3'-phospho 97.0 0.00071 2.4E-08 59.3 4.8 37 120-156 52-91 (630)
269 3b9q_A Chloroplast SRP recepto 97.0 0.0017 5.7E-08 52.0 6.6 34 118-151 98-134 (302)
270 2jeo_A Uridine-cytidine kinase 97.0 0.00054 1.8E-08 52.8 3.6 29 118-146 23-51 (245)
271 3thx_B DNA mismatch repair pro 96.9 0.0017 5.9E-08 59.3 7.3 24 119-142 672-695 (918)
272 1j8m_F SRP54, signal recogniti 96.9 0.0018 6.3E-08 51.6 6.6 73 120-192 98-193 (297)
273 4gp7_A Metallophosphoesterase; 96.9 0.00026 8.9E-09 51.7 1.6 22 118-139 7-28 (171)
274 1odf_A YGR205W, hypothetical 3 96.9 0.00049 1.7E-08 54.7 2.9 27 119-145 30-56 (290)
275 1ls1_A Signal recognition part 96.9 0.003 1E-07 50.3 7.4 72 120-191 98-192 (295)
276 2og2_A Putative signal recogni 96.8 0.0022 7.4E-08 52.6 6.5 34 119-152 156-192 (359)
277 1gtv_A TMK, thymidylate kinase 96.8 0.0003 1E-08 52.7 1.2 24 122-145 2-25 (214)
278 3lnc_A Guanylate kinase, GMP k 96.8 0.00035 1.2E-08 53.3 1.5 27 118-144 25-52 (231)
279 1a7j_A Phosphoribulokinase; tr 96.8 0.00073 2.5E-08 53.7 3.4 34 121-154 6-42 (290)
280 2orv_A Thymidine kinase; TP4A 96.8 0.0024 8.4E-08 49.0 6.0 69 121-192 20-103 (234)
281 4eaq_A DTMP kinase, thymidylat 96.8 0.001 3.5E-08 51.0 3.9 33 119-151 25-59 (229)
282 1nlf_A Regulatory protein REPA 96.8 0.00065 2.2E-08 53.4 2.8 28 117-144 27-54 (279)
283 1sky_E F1-ATPase, F1-ATP synth 96.8 0.0036 1.2E-07 53.0 7.5 26 119-144 150-175 (473)
284 3tif_A Uncharacterized ABC tra 96.7 0.00057 1.9E-08 52.7 2.2 28 117-144 28-55 (235)
285 3thx_A DNA mismatch repair pro 96.7 0.0029 1E-07 57.9 7.1 21 121-141 663-683 (934)
286 3p32_A Probable GTPase RV1496/ 96.7 0.0088 3E-07 48.7 9.4 35 119-153 78-115 (355)
287 3hdt_A Putative kinase; struct 96.7 0.0012 4.2E-08 50.4 3.9 30 121-150 15-44 (223)
288 3gmt_A Adenylate kinase; ssgci 96.7 0.0013 4.5E-08 50.5 4.1 31 121-151 9-39 (230)
289 3tqf_A HPR(Ser) kinase; transf 96.7 0.0013 4.3E-08 48.4 3.8 25 119-143 15-39 (181)
290 2qm8_A GTPase/ATPase; G protei 96.7 0.0063 2.2E-07 49.3 8.3 28 117-144 52-79 (337)
291 1m8p_A Sulfate adenylyltransfe 96.7 0.0013 4.4E-08 57.2 4.3 38 120-157 396-437 (573)
292 2fwr_A DNA repair protein RAD2 96.7 0.0015 5E-08 55.0 4.5 34 121-154 109-142 (472)
293 2hf9_A Probable hydrogenase ni 96.7 0.007 2.4E-07 45.4 8.0 25 120-144 38-62 (226)
294 2i3b_A HCR-ntpase, human cance 96.7 0.0013 4.5E-08 48.9 3.7 23 122-144 3-25 (189)
295 2cbz_A Multidrug resistance-as 96.7 0.0007 2.4E-08 52.2 2.2 28 117-144 28-55 (237)
296 3aez_A Pantothenate kinase; tr 96.6 0.0013 4.3E-08 52.9 3.7 27 118-144 88-114 (312)
297 1xjc_A MOBB protein homolog; s 96.6 0.0022 7.7E-08 46.9 4.7 24 121-144 5-28 (169)
298 1np6_A Molybdopterin-guanine d 96.6 0.0015 5.2E-08 48.0 3.8 25 120-144 6-30 (174)
299 2ffh_A Protein (FFH); SRP54, s 96.6 0.011 3.6E-07 49.6 9.3 73 119-191 97-192 (425)
300 1rj9_A FTSY, signal recognitio 96.6 0.0024 8.3E-08 51.1 5.0 25 120-144 102-126 (304)
301 4a1f_A DNAB helicase, replicat 96.6 0.0024 8.3E-08 51.8 5.1 38 116-153 42-82 (338)
302 2pcj_A ABC transporter, lipopr 96.6 0.00062 2.1E-08 52.0 1.4 27 118-144 28-54 (224)
303 1b0u_A Histidine permease; ABC 96.6 0.00087 3E-08 52.5 2.2 28 117-144 29-56 (262)
304 2onk_A Molybdate/tungstate ABC 96.6 0.0011 3.7E-08 51.3 2.6 27 117-144 22-48 (240)
305 1mv5_A LMRA, multidrug resista 96.5 0.00084 2.9E-08 51.9 1.9 28 117-144 25-52 (243)
306 3bgw_A DNAB-like replicative h 96.5 0.0024 8.2E-08 53.8 4.8 38 116-153 193-233 (444)
307 3kta_A Chromosome segregation 96.5 0.0018 6.1E-08 47.2 3.6 23 122-144 28-50 (182)
308 2zu0_C Probable ATP-dependent 96.5 0.0012 4.1E-08 51.8 2.7 27 117-143 43-69 (267)
309 2ged_A SR-beta, signal recogni 96.5 0.0032 1.1E-07 46.0 4.9 25 119-143 47-71 (193)
310 1sgw_A Putative ABC transporte 96.5 0.00086 2.9E-08 51.0 1.8 27 118-144 33-59 (214)
311 3fvq_A Fe(3+) IONS import ATP- 96.5 0.0011 3.7E-08 54.4 2.4 28 117-144 27-54 (359)
312 3vkw_A Replicase large subunit 96.5 0.00078 2.7E-08 56.6 1.6 24 119-142 160-183 (446)
313 2olj_A Amino acid ABC transpor 96.5 0.001 3.6E-08 52.1 2.2 28 117-144 47-74 (263)
314 2ghi_A Transport protein; mult 96.5 0.001 3.5E-08 52.0 2.2 28 117-144 43-70 (260)
315 3cr8_A Sulfate adenylyltranfer 96.5 0.0012 3.9E-08 57.2 2.6 38 119-156 368-409 (552)
316 2ixe_A Antigen peptide transpo 96.5 0.0011 3.6E-08 52.3 2.2 28 117-144 42-69 (271)
317 3e2i_A Thymidine kinase; Zn-bi 96.5 0.00083 2.8E-08 51.1 1.5 70 122-193 30-115 (219)
318 2d2e_A SUFC protein; ABC-ATPas 96.5 0.0011 3.7E-08 51.5 2.2 26 118-143 27-52 (250)
319 1sq5_A Pantothenate kinase; P- 96.5 0.0037 1.3E-07 49.9 5.4 27 119-145 79-105 (308)
320 1g6h_A High-affinity branched- 96.5 0.00092 3.1E-08 52.2 1.7 27 118-144 31-57 (257)
321 2pze_A Cystic fibrosis transme 96.4 0.00095 3.2E-08 51.2 1.7 27 118-144 32-58 (229)
322 1vpl_A ABC transporter, ATP-bi 96.4 0.0012 4E-08 51.6 2.2 28 117-144 38-65 (256)
323 1ji0_A ABC transporter; ATP bi 96.4 0.00096 3.3E-08 51.5 1.7 27 118-144 30-56 (240)
324 2yz2_A Putative ABC transporte 96.4 0.0012 4E-08 51.8 2.2 28 117-144 30-57 (266)
325 3gfo_A Cobalt import ATP-bindi 96.4 0.00098 3.4E-08 52.6 1.7 27 118-144 32-58 (275)
326 2ff7_A Alpha-hemolysin translo 96.4 0.00097 3.3E-08 51.8 1.7 27 118-144 33-59 (247)
327 2it1_A 362AA long hypothetical 96.4 0.0014 4.9E-08 53.7 2.7 28 117-144 26-53 (362)
328 3b85_A Phosphate starvation-in 96.4 0.0014 4.8E-08 49.5 2.4 24 120-143 22-45 (208)
329 2yyz_A Sugar ABC transporter, 96.4 0.0014 4.9E-08 53.6 2.7 28 117-144 26-53 (359)
330 1v43_A Sugar-binding transport 96.4 0.0015 5.1E-08 53.8 2.7 28 117-144 34-61 (372)
331 3rlf_A Maltose/maltodextrin im 96.4 0.0015 5.1E-08 54.0 2.7 28 117-144 26-53 (381)
332 1wb9_A DNA mismatch repair pro 96.4 0.011 3.7E-07 53.4 8.5 23 121-143 608-630 (800)
333 3tqc_A Pantothenate kinase; bi 96.4 0.0023 7.9E-08 51.6 3.7 24 122-145 94-117 (321)
334 4g1u_C Hemin import ATP-bindin 96.4 0.0011 3.6E-08 52.1 1.7 27 118-144 35-61 (266)
335 2qi9_C Vitamin B12 import ATP- 96.4 0.0011 3.7E-08 51.6 1.7 27 118-144 24-50 (249)
336 2gk6_A Regulator of nonsense t 96.4 0.0035 1.2E-07 54.9 5.1 24 121-144 196-219 (624)
337 1bif_A 6-phosphofructo-2-kinas 96.4 0.013 4.6E-07 49.4 8.5 34 120-153 39-75 (469)
338 2ocp_A DGK, deoxyguanosine kin 96.4 0.0028 9.4E-08 48.6 3.9 25 121-145 3-27 (241)
339 4i1u_A Dephospho-COA kinase; s 96.4 0.0041 1.4E-07 47.1 4.7 32 120-152 9-40 (210)
340 1z47_A CYSA, putative ABC-tran 96.4 0.0013 4.6E-08 53.7 2.2 27 118-144 39-65 (355)
341 3d31_A Sulfate/molybdate ABC t 96.4 0.0013 4.3E-08 53.8 2.0 28 117-144 23-50 (348)
342 2ihy_A ABC transporter, ATP-bi 96.3 0.0012 4.2E-08 52.2 1.7 27 118-144 45-71 (279)
343 4edh_A DTMP kinase, thymidylat 96.3 0.0041 1.4E-07 47.1 4.5 32 120-151 6-40 (213)
344 2nq2_C Hypothetical ABC transp 96.3 0.0012 4.2E-08 51.3 1.7 27 118-144 29-55 (253)
345 2p67_A LAO/AO transport system 96.3 0.028 9.7E-07 45.4 9.8 27 118-144 54-80 (341)
346 1g29_1 MALK, maltose transport 96.3 0.0015 5.3E-08 53.7 2.2 27 118-144 27-53 (372)
347 1g8f_A Sulfate adenylyltransfe 96.3 0.0028 9.5E-08 54.3 3.8 35 120-154 395-434 (511)
348 2wsm_A Hydrogenase expression/ 96.3 0.0037 1.3E-07 46.8 4.1 25 120-144 30-54 (221)
349 3h1t_A Type I site-specific re 96.3 0.0064 2.2E-07 52.7 6.1 25 120-144 198-222 (590)
350 1gm5_A RECG; helicase, replica 96.3 0.04 1.4E-06 49.6 11.3 35 119-153 388-425 (780)
351 1q57_A DNA primase/helicase; d 96.3 0.0035 1.2E-07 53.4 4.4 38 116-153 238-279 (503)
352 3sop_A Neuronal-specific septi 96.2 0.0024 8.1E-08 50.2 3.0 23 122-144 4-26 (270)
353 1cz4_A VCP-like ATPase; double 96.2 0.0084 2.9E-07 44.4 5.7 60 11-72 114-178 (185)
354 1lw7_A Transcriptional regulat 96.2 0.0031 1.1E-07 51.5 3.6 28 120-147 170-197 (365)
355 1p5z_B DCK, deoxycytidine kina 96.2 0.0013 4.3E-08 51.3 1.2 26 120-145 24-49 (263)
356 3gd7_A Fusion complex of cysti 96.2 0.002 6.8E-08 53.4 2.4 27 117-143 44-70 (390)
357 1oxx_K GLCV, glucose, ABC tran 96.2 0.0013 4.6E-08 53.7 1.3 28 117-144 28-55 (353)
358 4ag6_A VIRB4 ATPase, type IV s 96.2 0.0064 2.2E-07 50.0 5.3 34 119-152 34-70 (392)
359 2pjz_A Hypothetical protein ST 96.1 0.002 6.8E-08 50.5 2.1 27 117-144 28-54 (263)
360 2f9l_A RAB11B, member RAS onco 96.1 0.0033 1.1E-07 46.4 3.1 22 122-143 7-28 (199)
361 2f1r_A Molybdopterin-guanine d 96.1 0.0018 6E-08 47.5 1.6 23 122-144 4-26 (171)
362 2bbs_A Cystic fibrosis transme 96.1 0.0019 6.6E-08 51.3 1.9 28 117-144 61-88 (290)
363 1oix_A RAS-related protein RAB 96.1 0.0031 1.1E-07 46.4 2.9 23 122-144 31-53 (191)
364 3tmk_A Thymidylate kinase; pho 96.1 0.0071 2.4E-07 45.9 4.9 29 120-148 5-33 (216)
365 1nrj_B SR-beta, signal recogni 96.1 0.0044 1.5E-07 46.2 3.7 26 119-144 11-36 (218)
366 1wp9_A ATP-dependent RNA helic 96.1 0.012 4.3E-07 48.5 6.8 32 122-153 25-60 (494)
367 2npi_A Protein CLP1; CLP1-PCF1 96.1 0.0032 1.1E-07 53.3 3.1 28 117-144 135-162 (460)
368 2gks_A Bifunctional SAT/APS ki 96.1 0.0065 2.2E-07 52.5 5.1 38 120-157 372-412 (546)
369 2qtf_A Protein HFLX, GTP-bindi 96.1 0.016 5.4E-07 47.5 7.1 21 122-142 181-201 (364)
370 3tui_C Methionine import ATP-b 96.0 0.003 1E-07 51.8 2.7 28 117-144 51-78 (366)
371 1f2t_A RAD50 ABC-ATPase; DNA d 96.0 0.0043 1.5E-07 44.2 3.2 23 122-144 25-47 (149)
372 3nh6_A ATP-binding cassette SU 96.0 0.0019 6.6E-08 51.7 1.4 28 117-144 77-104 (306)
373 1ewq_A DNA mismatch repair pro 96.0 0.017 5.7E-07 51.9 7.6 23 121-143 577-599 (765)
374 2wjy_A Regulator of nonsense t 96.0 0.0069 2.4E-07 54.7 5.1 24 121-144 372-395 (800)
375 2dyk_A GTP-binding protein; GT 96.0 0.0044 1.5E-07 43.6 3.2 22 122-143 3-24 (161)
376 3v9p_A DTMP kinase, thymidylat 96.0 0.0047 1.6E-07 47.3 3.3 25 120-144 25-49 (227)
377 3k53_A Ferrous iron transport 95.9 0.011 3.8E-07 46.1 5.6 23 121-143 4-26 (271)
378 1tf7_A KAIC; homohexamer, hexa 95.9 0.0058 2E-07 52.4 4.2 37 117-153 36-76 (525)
379 3oiy_A Reverse gyrase helicase 95.9 0.0098 3.4E-07 49.0 5.4 21 120-140 36-56 (414)
380 1z2a_A RAS-related protein RAB 95.9 0.0048 1.6E-07 43.6 3.1 23 121-143 6-28 (168)
381 1w36_D RECD, exodeoxyribonucle 95.9 0.0048 1.6E-07 54.0 3.5 25 120-144 164-188 (608)
382 2dpy_A FLII, flagellum-specifi 95.9 0.0079 2.7E-07 50.5 4.7 30 117-146 154-183 (438)
383 2o8b_B DNA mismatch repair pro 95.9 0.024 8.1E-07 52.6 8.2 21 121-141 790-810 (1022)
384 2zej_A Dardarin, leucine-rich 95.9 0.0039 1.3E-07 45.4 2.5 21 122-142 4-24 (184)
385 1kao_A RAP2A; GTP-binding prot 95.9 0.0054 1.8E-07 43.2 3.2 22 122-143 5-26 (167)
386 2wji_A Ferrous iron transport 95.9 0.0048 1.7E-07 44.0 2.9 21 122-142 5-25 (165)
387 3lv8_A DTMP kinase, thymidylat 95.9 0.0057 1.9E-07 47.1 3.4 25 120-144 27-51 (236)
388 1nij_A Hypothetical protein YJ 95.9 0.0078 2.7E-07 48.3 4.4 23 122-144 6-28 (318)
389 3tbk_A RIG-I helicase domain; 95.8 0.027 9.2E-07 47.7 8.0 24 120-143 19-42 (555)
390 1tq4_A IIGP1, interferon-induc 95.8 0.0057 1.9E-07 51.0 3.6 23 120-142 69-91 (413)
391 3vkg_A Dynein heavy chain, cyt 95.8 0.031 1.1E-06 57.1 9.3 92 87-191 1624-1716(3245)
392 2v6i_A RNA helicase; membrane, 95.8 0.012 4.1E-07 49.1 5.6 33 120-152 2-38 (431)
393 1ek0_A Protein (GTP-binding pr 95.8 0.0058 2E-07 43.2 3.1 22 122-143 5-26 (170)
394 2ce2_X GTPase HRAS; signaling 95.8 0.0052 1.8E-07 43.1 2.8 22 122-143 5-26 (166)
395 1u8z_A RAS-related protein RAL 95.8 0.0061 2.1E-07 43.0 3.1 23 121-143 5-27 (168)
396 2lkc_A Translation initiation 95.8 0.0075 2.6E-07 43.1 3.6 24 119-142 7-30 (178)
397 2nzj_A GTP-binding protein REM 95.8 0.0058 2E-07 43.6 3.0 22 121-142 5-26 (175)
398 1z0j_A RAB-22, RAS-related pro 95.8 0.0063 2.2E-07 43.1 3.2 23 121-143 7-29 (170)
399 3ld9_A DTMP kinase, thymidylat 95.8 0.0071 2.4E-07 46.2 3.6 27 120-146 21-47 (223)
400 2vp4_A Deoxynucleoside kinase; 95.8 0.0051 1.7E-07 46.8 2.8 31 120-151 20-50 (230)
401 2qag_B Septin-6, protein NEDD5 95.7 0.0062 2.1E-07 51.0 3.4 27 117-143 37-65 (427)
402 1z08_A RAS-related protein RAB 95.7 0.0065 2.2E-07 43.1 3.2 23 121-143 7-29 (170)
403 1wms_A RAB-9, RAB9, RAS-relate 95.7 0.0064 2.2E-07 43.5 3.2 23 121-143 8-30 (177)
404 1upt_A ARL1, ADP-ribosylation 95.7 0.0075 2.6E-07 42.8 3.4 25 119-143 6-30 (171)
405 1ky3_A GTP-binding protein YPT 95.7 0.0066 2.3E-07 43.5 3.2 24 120-143 8-31 (182)
406 2obl_A ESCN; ATPase, hydrolase 95.7 0.008 2.7E-07 48.9 3.9 29 118-146 69-97 (347)
407 1pui_A ENGB, probable GTP-bind 95.7 0.0033 1.1E-07 46.6 1.4 26 117-142 23-48 (210)
408 1c1y_A RAS-related protein RAP 95.7 0.007 2.4E-07 42.7 3.1 22 122-143 5-26 (167)
409 1g16_A RAS-related protein SEC 95.7 0.0062 2.1E-07 43.1 2.8 22 122-143 5-26 (170)
410 1ko7_A HPR kinase/phosphatase; 95.7 0.0085 2.9E-07 48.1 3.8 24 120-143 144-167 (314)
411 1r2q_A RAS-related protein RAB 95.7 0.0071 2.4E-07 42.7 3.1 22 121-142 7-28 (170)
412 2xzl_A ATP-dependent helicase 95.6 0.0096 3.3E-07 53.8 4.5 22 121-142 376-397 (802)
413 2wjg_A FEOB, ferrous iron tran 95.6 0.0067 2.3E-07 44.0 2.9 23 121-143 8-30 (188)
414 3iby_A Ferrous iron transport 95.6 0.019 6.4E-07 44.6 5.7 22 122-143 3-24 (256)
415 1r8s_A ADP-ribosylation factor 95.6 0.0074 2.5E-07 42.6 3.1 22 122-143 2-23 (164)
416 4a2p_A RIG-I, retinoic acid in 95.6 0.031 1.1E-06 47.4 7.5 23 121-143 23-45 (556)
417 2erx_A GTP-binding protein DI- 95.6 0.0071 2.4E-07 42.8 3.0 21 122-142 5-25 (172)
418 3bc1_A RAS-related protein RAB 95.6 0.0073 2.5E-07 43.7 3.1 23 121-143 12-34 (195)
419 3q85_A GTP-binding protein REM 95.6 0.007 2.4E-07 42.9 2.9 20 122-141 4-23 (169)
420 3dmq_A RNA polymerase-associat 95.6 0.021 7.3E-07 52.6 6.7 39 120-158 170-213 (968)
421 4tmk_A Protein (thymidylate ki 95.6 0.0089 3.1E-07 45.2 3.5 24 121-144 4-27 (213)
422 3a1s_A Iron(II) transport prot 95.6 0.024 8.1E-07 44.0 6.0 22 121-142 6-27 (258)
423 3q72_A GTP-binding protein RAD 95.6 0.0062 2.1E-07 43.1 2.5 20 122-141 4-23 (166)
424 1z0f_A RAB14, member RAS oncog 95.5 0.0082 2.8E-07 42.9 3.1 23 121-143 16-38 (179)
425 4dsu_A GTPase KRAS, isoform 2B 95.5 0.0084 2.9E-07 43.3 3.2 23 121-143 5-27 (189)
426 3ice_A Transcription terminati 95.5 0.016 5.5E-07 48.0 5.0 35 117-151 171-210 (422)
427 2fn4_A P23, RAS-related protei 95.5 0.0078 2.7E-07 43.1 2.9 23 121-143 10-32 (181)
428 3clv_A RAB5 protein, putative; 95.5 0.0087 3E-07 43.6 3.2 24 120-143 7-30 (208)
429 2y8e_A RAB-protein 6, GH09086P 95.5 0.0077 2.6E-07 43.0 2.8 23 121-143 15-37 (179)
430 3con_A GTPase NRAS; structural 95.5 0.0087 3E-07 43.5 3.1 22 122-143 23-44 (190)
431 2oil_A CATX-8, RAS-related pro 95.5 0.0087 3E-07 43.6 3.1 23 121-143 26-48 (193)
432 2hxs_A RAB-26, RAS-related pro 95.5 0.0085 2.9E-07 42.9 3.0 22 121-142 7-28 (178)
433 2a9k_A RAS-related protein RAL 95.5 0.0089 3E-07 43.0 3.1 23 121-143 19-41 (187)
434 3tw8_B RAS-related protein RAB 95.5 0.008 2.7E-07 43.0 2.8 22 121-142 10-31 (181)
435 2efe_B Small GTP-binding prote 95.5 0.0092 3.2E-07 42.8 3.2 23 121-143 13-35 (181)
436 1m7b_A RND3/RHOE small GTP-bin 95.5 0.008 2.7E-07 43.6 2.8 24 120-143 7-30 (184)
437 2gj8_A MNME, tRNA modification 95.4 0.0075 2.6E-07 43.5 2.6 23 121-143 5-27 (172)
438 3qks_A DNA double-strand break 95.4 0.0093 3.2E-07 44.6 3.2 24 121-144 24-47 (203)
439 2atv_A RERG, RAS-like estrogen 95.4 0.01 3.5E-07 43.5 3.3 24 120-143 28-51 (196)
440 2bme_A RAB4A, RAS-related prot 95.4 0.0085 2.9E-07 43.2 2.8 23 121-143 11-33 (186)
441 1mh1_A RAC1; GTP-binding, GTPa 95.4 0.0099 3.4E-07 42.8 3.1 23 121-143 6-28 (186)
442 3kkq_A RAS-related protein M-R 95.4 0.0099 3.4E-07 42.8 3.1 23 121-143 19-41 (183)
443 1svi_A GTP-binding protein YSX 95.4 0.0092 3.1E-07 43.5 2.9 24 119-142 22-45 (195)
444 3b1v_A Ferrous iron uptake tra 95.4 0.025 8.6E-07 44.3 5.6 21 122-142 5-25 (272)
445 3bfv_A CAPA1, CAPB2, membrane 95.4 0.054 1.8E-06 42.3 7.5 54 92-154 63-120 (271)
446 2g6b_A RAS-related protein RAB 95.4 0.01 3.5E-07 42.5 3.1 23 121-143 11-33 (180)
447 1yrb_A ATP(GTP)binding protein 95.4 0.02 6.7E-07 44.0 4.9 33 120-152 14-48 (262)
448 1yqt_A RNAse L inhibitor; ATP- 95.4 0.011 3.7E-07 51.0 3.7 27 118-144 45-71 (538)
449 3ihw_A Centg3; RAS, centaurin, 95.3 0.011 3.7E-07 43.1 3.2 22 122-143 22-43 (184)
450 1knx_A Probable HPR(Ser) kinas 95.3 0.0067 2.3E-07 48.6 2.2 25 119-143 146-170 (312)
451 3t1o_A Gliding protein MGLA; G 95.3 0.011 3.7E-07 43.0 3.1 24 121-144 15-38 (198)
452 3tkl_A RAS-related protein RAB 95.3 0.011 3.7E-07 43.1 3.1 23 121-143 17-39 (196)
453 3c5c_A RAS-like protein 12; GD 95.3 0.011 3.8E-07 43.1 3.2 22 122-143 23-44 (187)
454 3hjn_A DTMP kinase, thymidylat 95.3 0.02 6.7E-07 42.7 4.5 30 123-152 3-35 (197)
455 2p5s_A RAS and EF-hand domain 95.3 0.011 3.7E-07 43.5 3.1 24 120-143 28-51 (199)
456 2gf9_A RAS-related protein RAB 95.3 0.011 3.7E-07 43.0 3.1 22 122-143 24-45 (189)
457 1m2o_B GTP-binding protein SAR 95.3 0.0099 3.4E-07 43.5 2.8 23 120-142 23-45 (190)
458 3bwd_D RAC-like GTP-binding pr 95.3 0.014 4.6E-07 41.9 3.5 24 120-143 8-31 (182)
459 1jr3_D DNA polymerase III, del 95.3 0.056 1.9E-06 43.4 7.5 64 119-193 17-91 (343)
460 2eyq_A TRCF, transcription-rep 95.3 0.2 7E-06 47.0 12.2 33 120-152 624-659 (1151)
461 2bov_A RAla, RAS-related prote 95.3 0.011 3.8E-07 43.3 3.1 23 121-143 15-37 (206)
462 3i8s_A Ferrous iron transport 95.3 0.04 1.4E-06 43.0 6.4 23 121-143 4-26 (274)
463 1vg8_A RAS-related protein RAB 95.2 0.012 4E-07 43.3 3.2 24 120-143 8-31 (207)
464 3euj_A Chromosome partition pr 95.2 0.012 4E-07 50.1 3.5 27 117-144 27-53 (483)
465 2cxx_A Probable GTP-binding pr 95.2 0.0089 3.1E-07 43.2 2.4 22 122-143 3-24 (190)
466 3pqc_A Probable GTP-binding pr 95.2 0.011 3.8E-07 42.8 3.0 24 120-143 23-46 (195)
467 1z06_A RAS-related protein RAB 95.2 0.012 4.1E-07 42.7 3.2 23 121-143 21-43 (189)
468 1oyw_A RECQ helicase, ATP-depe 95.2 0.06 2.1E-06 46.1 7.9 33 120-152 40-72 (523)
469 3qf7_A RAD50; ABC-ATPase, ATPa 95.2 0.012 4E-07 48.2 3.4 22 122-143 25-46 (365)
470 4hlc_A DTMP kinase, thymidylat 95.2 0.021 7.3E-07 42.8 4.6 30 122-151 4-35 (205)
471 2a5j_A RAS-related protein RAB 95.2 0.012 4.1E-07 42.9 3.1 22 122-143 23-44 (191)
472 2gxq_A Heat resistant RNA depe 95.2 0.014 4.8E-07 43.0 3.5 24 120-143 38-62 (207)
473 2rcn_A Probable GTPase ENGC; Y 95.2 0.012 4.2E-07 48.1 3.4 25 120-144 215-239 (358)
474 1zd9_A ADP-ribosylation factor 95.2 0.012 4.2E-07 42.8 3.1 23 121-143 23-45 (188)
475 1x3s_A RAS-related protein RAB 95.2 0.012 4.2E-07 42.7 3.1 23 121-143 16-38 (195)
476 3dz8_A RAS-related protein RAB 95.2 0.012 4E-07 42.9 3.0 23 122-144 25-47 (191)
477 1e9r_A Conjugal transfer prote 95.2 0.018 6.1E-07 48.0 4.4 34 120-153 53-89 (437)
478 3cio_A ETK, tyrosine-protein k 95.2 0.055 1.9E-06 42.9 7.1 35 119-153 103-141 (299)
479 2fg5_A RAB-22B, RAS-related pr 95.2 0.011 3.9E-07 43.1 2.9 23 121-143 24-46 (192)
480 3reg_A RHO-like small GTPase; 95.2 0.013 4.3E-07 42.8 3.1 23 121-143 24-46 (194)
481 3t5g_A GTP-binding protein RHE 95.2 0.011 3.9E-07 42.4 2.8 22 121-142 7-28 (181)
482 2iwr_A Centaurin gamma 1; ANK 95.2 0.0091 3.1E-07 42.8 2.3 23 121-143 8-30 (178)
483 4gl2_A Interferon-induced heli 95.1 0.0096 3.3E-07 52.4 2.8 24 120-143 22-45 (699)
484 3b5x_A Lipid A export ATP-bind 95.1 0.0099 3.4E-07 51.6 2.8 28 117-144 366-393 (582)
485 2b6h_A ADP-ribosylation factor 95.1 0.014 4.9E-07 42.7 3.4 24 119-142 28-51 (192)
486 1qhl_A Protein (cell division 95.1 0.0044 1.5E-07 47.5 0.5 22 123-144 30-51 (227)
487 2yv5_A YJEQ protein; hydrolase 95.1 0.014 4.6E-07 46.5 3.3 24 120-144 165-188 (302)
488 2www_A Methylmalonic aciduria 95.1 0.015 5.1E-07 47.3 3.6 25 120-144 74-98 (349)
489 1fzq_A ADP-ribosylation factor 95.1 0.011 3.7E-07 42.9 2.5 24 120-143 16-39 (181)
490 1zbd_A Rabphilin-3A; G protein 95.1 0.013 4.4E-07 43.1 2.9 23 121-143 9-31 (203)
491 2bcg_Y Protein YP2, GTP-bindin 95.1 0.012 4.2E-07 43.3 2.8 23 121-143 9-31 (206)
492 2gf0_A GTP-binding protein DI- 95.1 0.014 4.9E-07 42.5 3.1 23 120-142 8-30 (199)
493 3cph_A RAS-related protein SEC 95.1 0.014 4.8E-07 43.1 3.1 24 120-143 20-43 (213)
494 1ksh_A ARF-like protein 2; sma 95.0 0.013 4.5E-07 42.3 2.9 24 119-142 17-40 (186)
495 3oes_A GTPase rhebl1; small GT 95.0 0.013 4.3E-07 43.2 2.8 24 120-143 24-47 (201)
496 1qde_A EIF4A, translation init 95.0 0.022 7.6E-07 42.6 4.2 59 82-143 13-75 (224)
497 2fh5_B SR-beta, signal recogni 95.0 0.015 5.1E-07 43.1 3.2 24 120-143 7-30 (214)
498 1u0l_A Probable GTPase ENGC; p 95.0 0.0097 3.3E-07 47.3 2.2 25 120-144 169-193 (301)
499 1gwn_A RHO-related GTP-binding 95.0 0.013 4.5E-07 43.5 2.8 23 121-143 29-51 (205)
500 1moz_A ARL1, ADP-ribosylation 95.0 0.0085 2.9E-07 43.1 1.7 23 119-141 17-39 (183)
No 1
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=1.2e-32 Score=245.91 Aligned_cols=189 Identities=89% Similarity=1.430 Sum_probs=176.8
Q ss_pred cchhhHHHHhHHHhhhcCcccccCCEEEEecCcceEEEEEEEecCCCeEEEcCceEEEEcCCCCcchhHHhhcCCCCccc
Q psy6208 8 EMSNLFEVYLKPYFLEAYRPVHKDDLFIVRGGMRAVEFKIVDTDPAPYCIVAADTVIHCEGDPIKREEEEEASNAVGYDD 87 (197)
Q Consensus 8 ~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (197)
.....+..++++||.+.++++..|+.+.+......+.|+|+.++|.+.+.+...|.+.+...+..........+.++|+|
T Consensus 126 ~~~~~~~~~l~~~~~~~~~~v~~gd~~~v~~~~~~~~f~V~~~~P~~~~~v~~~T~i~~~~~~~~~~~~~~~~~~v~~~d 205 (806)
T 3cf2_A 126 ITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDTVIHCEGEPIKREDEEESLNEVGYDD 205 (806)
T ss_dssp CCSCHHHHTHHHHHTTTCCEEETTCEEEECCTTSCEEEEEEEESSSSEEECCTTSBCCBCSCCBCCCTTSCCSSSCCGGG
T ss_pred cchhHHHHHHHHHHHhcCCcccCCCEEEEecCCcEEEEEEEEEeCCCCeEECCCcEEEEeccccCcccccccCCCCChhh
Confidence 34567888999999999999999999999999999999999999999999999999998887776655555667899999
Q ss_pred ccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhhhccCccHHH
Q psy6208 88 IGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESN 167 (197)
Q Consensus 88 i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~~~~~~~v~~~~~~~~~~~~~~~~ 167 (197)
|+|+++++++|++.+..++.+|+.|..+|+.++++||||||||||||++|+++|++++.+++.++++++.+.+.++++..
T Consensus 206 IgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~sk~~gese~~ 285 (806)
T 3cf2_A 206 IGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESN 285 (806)
T ss_dssp CCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHSSCTTHHHHH
T ss_pred hcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhhcccchHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCeEEEEcccCccCcccC
Q psy6208 168 LRKAFEEADKNSPSIIFIDELDAIAPKRE 196 (197)
Q Consensus 168 ~~~~~~~a~~~~~~vl~lDeid~l~~~r~ 196 (197)
++.+|+.|...+|+||||||+|.|+++|+
T Consensus 286 lr~lF~~A~~~~PsIIfIDEiDal~~~r~ 314 (806)
T 3cf2_A 286 LRKAFEEAEKNAPAIIFIDELDAIAPKRE 314 (806)
T ss_dssp HHHHHHHHTTSCSEEEEEESGGGTCCTTT
T ss_pred HHHHHHHHHHcCCeEEEEehhcccccccC
Confidence 99999999999999999999999999875
No 2
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.96 E-value=2.1e-29 Score=209.39 Aligned_cols=119 Identities=47% Similarity=0.872 Sum_probs=115.0
Q ss_pred hhcCCCCcccccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhh
Q psy6208 78 EASNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIM 157 (197)
Q Consensus 78 ~~~~~~~~~~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~~~~~~~v~~~~~~ 157 (197)
...|.++|+||+|+++++++|++.+.+|+.+|+.|+.+|+.+++|+|||||||||||++|+|+|++++.+++.++++++.
T Consensus 140 ~~~p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l~ 219 (405)
T 4b4t_J 140 EKVPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELV 219 (405)
T ss_dssp ECSCSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGGGS
T ss_pred cCCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhHHhh
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCccHHHHHHHHHHHhcCCCeEEEEcccCccCcccC
Q psy6208 158 SKLAGESESNLRKAFEEADKNSPSIIFIDELDAIAPKRE 196 (197)
Q Consensus 158 ~~~~~~~~~~~~~~~~~a~~~~~~vl~lDeid~l~~~r~ 196 (197)
+.+.|+++..++.+|..|+..+||||||||+|.++++|.
T Consensus 220 sk~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~ 258 (405)
T 4b4t_J 220 QKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRV 258 (405)
T ss_dssp CSSTTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCS
T ss_pred ccccchHHHHHHHHHHHHHHhCCceEeeecchhhccCCC
Confidence 999999999999999999999999999999999999874
No 3
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.95 E-value=2.9e-27 Score=202.47 Aligned_cols=189 Identities=88% Similarity=1.423 Sum_probs=174.1
Q ss_pred cchhhHHHHhHHHhhhcCcccccCCEEEEecCcceEEEEEEEecCCCeEEEcCceEEEEcCCCCcchhHHhhcCCCCccc
Q psy6208 8 EMSNLFEVYLKPYFLEAYRPVHKDDLFIVRGGMRAVEFKIVDTDPAPYCIVAADTVIHCEGDPIKREEEEEASNAVGYDD 87 (197)
Q Consensus 8 ~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (197)
...+.++.+.++|..+.++++..++.+.+.+..+.+.+++....+.....+.+.+.+.+.+.+..........+.++|++
T Consensus 126 ~~~ga~d~~~Kp~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (489)
T 3hu3_A 126 ITGNLFEVYLKPYFLEAYRPIRKGDIFLVHGGMRAVEFKVVETDPSPYCIVAPDTVIHCEGEPIKREDEEESLNEVGYDD 205 (489)
T ss_dssp CCSCHHHHTHHHHHTTTCEEEETTCEEEEEETTEEEEEEEEEEESSSEEEECTTCEEECCSSCBCHHHHHHHHTCCCGGG
T ss_pred ccchhHHHHhHHHHhhcCcccccCCEEEecCCCceEEEEEEeecCCCceEEcCCeEEEEccCcccccccccccCCCCHHH
Confidence 34578999999999999999999999999999999999999999989888999999999888776655555566789999
Q ss_pred ccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhhhccCccHHH
Q psy6208 88 IGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESN 167 (197)
Q Consensus 88 i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~~~~~~~v~~~~~~~~~~~~~~~~ 167 (197)
|+|++.+++++.+.+..++..++.+..+++..+.++||+||||||||++|++++++++.+++.++|+++.+.+.++.+..
T Consensus 206 i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~~~~~g~~~~~ 285 (489)
T 3hu3_A 206 IGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESN 285 (489)
T ss_dssp CCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHHTSCTTHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhhhhhcchhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCeEEEEcccCccCcccC
Q psy6208 168 LRKAFEEADKNSPSIIFIDELDAIAPKRE 196 (197)
Q Consensus 168 ~~~~~~~a~~~~~~vl~lDeid~l~~~r~ 196 (197)
++.+|+.+....|++|||||||.|+++++
T Consensus 286 ~~~~f~~A~~~~p~iLfLDEId~l~~~~~ 314 (489)
T 3hu3_A 286 LRKAFEEAEKNAPAIIFIDELDAIAPKRE 314 (489)
T ss_dssp HHHHHHHHHHTCSEEEEEESHHHHCBCTT
T ss_pred HHHHHHHHHhcCCcEEEecchhhhccccc
Confidence 99999999999999999999999998764
No 4
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.95 E-value=2.8e-28 Score=203.43 Aligned_cols=120 Identities=52% Similarity=0.895 Sum_probs=115.8
Q ss_pred HhhcCCCCcccccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHhCCeEEEEechhh
Q psy6208 77 EEASNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEI 156 (197)
Q Consensus 77 ~~~~~~~~~~~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~~~~~~~v~~~~~ 156 (197)
.+..+.++|+||+|+++++++|++.+.+|+.+|+.|+.+|+.+++|+|||||||||||++|+|+|++++.+|+.++++++
T Consensus 173 ~~~~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l 252 (437)
T 4b4t_I 173 MDKSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSEL 252 (437)
T ss_dssp EESSCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGG
T ss_pred eccCCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHHh
Confidence 44577899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccCccHHHHHHHHHHHhcCCCeEEEEcccCccCcccC
Q psy6208 157 MSKLAGESESNLRKAFEEADKNSPSIIFIDELDAIAPKRE 196 (197)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~a~~~~~~vl~lDeid~l~~~r~ 196 (197)
.+.+.|+++..++.+|..|+..+||||||||+|.++++|.
T Consensus 253 ~sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~ 292 (437)
T 4b4t_I 253 IQKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRY 292 (437)
T ss_dssp CCSSSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCS
T ss_pred hhccCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCC
Confidence 9999999999999999999999999999999999999884
No 5
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.95 E-value=5e-28 Score=203.63 Aligned_cols=119 Identities=45% Similarity=0.859 Sum_probs=114.9
Q ss_pred hhcCCCCcccccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhh
Q psy6208 78 EASNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIM 157 (197)
Q Consensus 78 ~~~~~~~~~~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~~~~~~~v~~~~~~ 157 (197)
...+.++|+||+|+++++++|++.+.+|+.+|+.|..+|+.+++|+|||||||||||++|+|+|++++.+++.++++++.
T Consensus 173 ~~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~l~ 252 (437)
T 4b4t_L 173 FEQGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIV 252 (437)
T ss_dssp EESCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGTC
T ss_pred ccCCCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehhhhc
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCccHHHHHHHHHHHhcCCCeEEEEcccCccCcccC
Q psy6208 158 SKLAGESESNLRKAFEEADKNSPSIIFIDELDAIAPKRE 196 (197)
Q Consensus 158 ~~~~~~~~~~~~~~~~~a~~~~~~vl~lDeid~l~~~r~ 196 (197)
+.+.|+++..++.+|..|+...||||||||+|.++++|.
T Consensus 253 sk~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~ 291 (437)
T 4b4t_L 253 DKYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRF 291 (437)
T ss_dssp CSSSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCS
T ss_pred cccchHHHHHHHHHHHHHHhcCCceeeeecccccccccc
Confidence 999999999999999999999999999999999999873
No 6
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.95 E-value=5.9e-28 Score=203.16 Aligned_cols=119 Identities=50% Similarity=0.877 Sum_probs=115.0
Q ss_pred hhcCCCCcccccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhh
Q psy6208 78 EASNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIM 157 (197)
Q Consensus 78 ~~~~~~~~~~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~~~~~~~v~~~~~~ 157 (197)
+..|.++|+||+|+++++++|++.+.+++.+|+.|+.+|+.+++|+|||||||||||++|+|+|++++.+|+.++++++.
T Consensus 201 ~e~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L~ 280 (467)
T 4b4t_H 201 EEKPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELV 280 (467)
T ss_dssp ESSCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGGC
T ss_pred cCCCCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHhh
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCccHHHHHHHHHHHhcCCCeEEEEcccCccCcccC
Q psy6208 158 SKLAGESESNLRKAFEEADKNSPSIIFIDELDAIAPKRE 196 (197)
Q Consensus 158 ~~~~~~~~~~~~~~~~~a~~~~~~vl~lDeid~l~~~r~ 196 (197)
+.++|+++..++.+|..|+..+||||||||+|.++++|.
T Consensus 281 sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~ 319 (467)
T 4b4t_H 281 QKYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARF 319 (467)
T ss_dssp CCSSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCS
T ss_pred cccCCHHHHHHHHHHHHHHhcCCceEeeccccccccccc
Confidence 999999999999999999999999999999999999874
No 7
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.95 E-value=5e-28 Score=203.51 Aligned_cols=120 Identities=43% Similarity=0.790 Sum_probs=115.3
Q ss_pred HhhcCCCCcccccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHhCCeEEEEechhh
Q psy6208 77 EEASNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEI 156 (197)
Q Consensus 77 ~~~~~~~~~~~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~~~~~~~v~~~~~ 156 (197)
.+..+.++|+||+|+++++++|++.+.+|+.+|+.|+.+|+.+++|+|||||||||||++|+|+|++++.+++.++++++
T Consensus 172 ~~~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l 251 (434)
T 4b4t_M 172 VDEKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQL 251 (434)
T ss_dssp EESSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGG
T ss_pred cCCCCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhhh
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccCccHHHHHHHHHHHhcCCCeEEEEcccCccCcccC
Q psy6208 157 MSKLAGESESNLRKAFEEADKNSPSIIFIDELDAIAPKRE 196 (197)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~a~~~~~~vl~lDeid~l~~~r~ 196 (197)
.+.+.|+++..++.+|..|+..+||||||||+|.++++|.
T Consensus 252 ~~~~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~ 291 (434)
T 4b4t_M 252 VQMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRF 291 (434)
T ss_dssp CSSCSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCS
T ss_pred hhcccchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccC
Confidence 9999999999999999999999999999999999998874
No 8
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.95 E-value=1.7e-27 Score=200.04 Aligned_cols=119 Identities=51% Similarity=0.860 Sum_probs=114.7
Q ss_pred hhcCCCCcccccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhh
Q psy6208 78 EASNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIM 157 (197)
Q Consensus 78 ~~~~~~~~~~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~~~~~~~v~~~~~~ 157 (197)
...+.++|+||+|+++++++|.+.+.+++.+|+.|..+|+.+++|+|||||||||||++|+|+|++++.+++.++++++.
T Consensus 164 ~~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l~ 243 (428)
T 4b4t_K 164 NEKPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFV 243 (428)
T ss_dssp ESSCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGTC
T ss_pred CCCCCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchhh
Confidence 44678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCccHHHHHHHHHHHhcCCCeEEEEcccCccCcccC
Q psy6208 158 SKLAGESESNLRKAFEEADKNSPSIIFIDELDAIAPKRE 196 (197)
Q Consensus 158 ~~~~~~~~~~~~~~~~~a~~~~~~vl~lDeid~l~~~r~ 196 (197)
+.+.|+++..++.+|..|+..+||||||||+|.++++|.
T Consensus 244 ~~~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~ 282 (428)
T 4b4t_K 244 HKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRF 282 (428)
T ss_dssp CSSCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCS
T ss_pred ccccchhHHHHHHHHHHHHHcCCCeeechhhhhhhcccc
Confidence 999999999999999999999999999999999998873
No 9
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.93 E-value=7e-26 Score=204.17 Aligned_cols=186 Identities=90% Similarity=1.457 Sum_probs=170.1
Q ss_pred hhHHHHhHHHhhhcCcccccCCEEEEecCcceEEEEEEEecCCCeEEEcCceEEEEcCCCCcchhHHhhcCCCCcccccC
Q psy6208 11 NLFEVYLKPYFLEAYRPVHKDDLFIVRGGMRAVEFKIVDTDPAPYCIVAADTVIHCEGDPIKREEEEEASNAVGYDDIGG 90 (197)
Q Consensus 11 ~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g 90 (197)
.++..++.++|.+.++++..|+.+.+...+..+.|+|+.++|.+.+.+.+.+.+.+...+..........+.++|++|+|
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~~~~p~~~~~v~~~t~~~~~~~~~~~~~~~~~~~~v~~~di~G 208 (806)
T 1ypw_A 129 NLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDTVIHCEGEPIKREDEEESLNEVGYDDVGG 208 (806)
T ss_dssp CCTTTTTGGGTTTTCCBCCTTCEEEECCSSSCEEEEEEEETTTTCCBCCSSSEEEECSCCCCCCTTSCCSSSCCGGGCCS
T ss_pred chHHHHHHHHhccCCccccCCCEEEecCCCcceEEEEEeccCCCCceecCCeEEEecCccccchhhhcccCCCCHHHhCC
Confidence 45677899999888999999999999989999999999999999999999999999887766554444566899999999
Q ss_pred cHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhhhccCccHHHHHH
Q psy6208 91 CRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRK 170 (197)
Q Consensus 91 ~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 170 (197)
++.+++++.+.+..++.+++.+..+++.++.+++|+||||||||+++++++..++.+++.+++.++.+.+.+..+..+..
T Consensus 209 ~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v~~~~l~~~~~g~~~~~l~~ 288 (806)
T 1ypw_A 209 CRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRK 288 (806)
T ss_dssp CSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEEEHHHHSSSSTTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEEEchHhhhhhhhhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999989999999
Q ss_pred HHHHHhcCCCeEEEEcccCccCcccC
Q psy6208 171 AFEEADKNSPSIIFIDELDAIAPKRE 196 (197)
Q Consensus 171 ~~~~a~~~~~~vl~lDeid~l~~~r~ 196 (197)
+|+.+....|+++|+||+|.++++++
T Consensus 289 vf~~a~~~~p~il~iDEid~l~~~~~ 314 (806)
T 1ypw_A 289 AFEEAEKNAPAIIFIDELDAIAPKRE 314 (806)
T ss_dssp HHHHHHHHCSEEEEEESGGGTSCTTS
T ss_pred HHHHHHhcCCcEEEeccHHHhhhccc
Confidence 99999888899999999999998753
No 10
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.90 E-value=2.9e-24 Score=192.06 Aligned_cols=117 Identities=44% Similarity=0.854 Sum_probs=110.2
Q ss_pred cCCCCcccccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhhh
Q psy6208 80 SNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSK 159 (197)
Q Consensus 80 ~~~~~~~~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~~~~~~~v~~~~~~~~ 159 (197)
.+.++|++++|+++.++++.+.+.+++.+++.|..+|..++.++|||||||||||++|+++|++++.+++.++++++.+.
T Consensus 471 ~p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~s~ 550 (806)
T 3cf2_A 471 VPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTM 550 (806)
T ss_dssp CCCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHHTT
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCceEEeccchhhcc
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCccHHHHHHHHHHHhcCCCeEEEEcccCccCcccC
Q psy6208 160 LAGESESNLRKAFEEADKNSPSIIFIDELDAIAPKRE 196 (197)
Q Consensus 160 ~~~~~~~~~~~~~~~a~~~~~~vl~lDeid~l~~~r~ 196 (197)
|+|++++.++.+|+.|+...||||||||+|.++++|+
T Consensus 551 ~vGese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~ 587 (806)
T 3cf2_A 551 WFGESEANVREIFDKARQAAPCVLFFDELDSIAKARG 587 (806)
T ss_dssp TCSSCHHHHHHHHHHHHTTCSEEEECSCGGGCC----
T ss_pred ccchHHHHHHHHHHHHHHcCCceeechhhhHHhhccC
Confidence 9999999999999999999999999999999999874
No 11
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=99.88 E-value=6.1e-23 Score=165.85 Aligned_cols=116 Identities=45% Similarity=0.864 Sum_probs=109.5
Q ss_pred cCCCCcccccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhhh
Q psy6208 80 SNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSK 159 (197)
Q Consensus 80 ~~~~~~~~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~~~~~~~v~~~~~~~~ 159 (197)
.+.++|++|+|++.+++++.+.+.+++.+++.+..+++.++.+++|+||||||||++|+++|++++.+++.++|+++.+.
T Consensus 9 ~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l~~~ 88 (301)
T 3cf0_A 9 VPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTM 88 (301)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHHHHH
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHHHhh
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCccHHHHHHHHHHHhcCCCeEEEEcccCccCccc
Q psy6208 160 LAGESESNLRKAFEEADKNSPSIIFIDELDAIAPKR 195 (197)
Q Consensus 160 ~~~~~~~~~~~~~~~a~~~~~~vl~lDeid~l~~~r 195 (197)
+.+..+..++.+|..+....|++|||||+|.+++++
T Consensus 89 ~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~ 124 (301)
T 3cf0_A 89 WFGESEANVREIFDKARQAAPCVLFFDELDSIAKAR 124 (301)
T ss_dssp HHTTCTTHHHHHHHHHHHTCSEEEEECSTTHHHHHH
T ss_pred hcCchHHHHHHHHHHHHhcCCeEEEEEChHHHhhcc
Confidence 999888899999999998889999999999987654
No 12
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=99.88 E-value=2.6e-22 Score=163.70 Aligned_cols=116 Identities=44% Similarity=0.751 Sum_probs=106.6
Q ss_pred cCCCCcccccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHh-CCeEEEEechhhhh
Q psy6208 80 SNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANET-GAFFFLINGPEIMS 158 (197)
Q Consensus 80 ~~~~~~~~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~-~~~~~~v~~~~~~~ 158 (197)
.+.++|+||+|++.+++.+.+.+.+++.+++.+... ..+++++||+||||||||++|+++|+++ +.+++.++++++.+
T Consensus 6 ~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~-~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l~~ 84 (322)
T 1xwi_A 6 RPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGK-RTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVS 84 (322)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTT-CCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSSCC
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCC-CCCCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHHHHh
Confidence 457899999999999999999999999999888743 4567899999999999999999999999 88999999999999
Q ss_pred hccCccHHHHHHHHHHHhcCCCeEEEEcccCccCcccC
Q psy6208 159 KLAGESESNLRKAFEEADKNSPSIIFIDELDAIAPKRE 196 (197)
Q Consensus 159 ~~~~~~~~~~~~~~~~a~~~~~~vl~lDeid~l~~~r~ 196 (197)
.+.+..+..++.+|..+....|+||||||+|.++++|+
T Consensus 85 ~~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~ 122 (322)
T 1xwi_A 85 KWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRS 122 (322)
T ss_dssp SSCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSS
T ss_pred hhhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccc
Confidence 99999999999999999988999999999999988764
No 13
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.88 E-value=2.5e-22 Score=163.66 Aligned_cols=115 Identities=45% Similarity=0.789 Sum_probs=106.2
Q ss_pred cCCCCcccccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhhh
Q psy6208 80 SNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSK 159 (197)
Q Consensus 80 ~~~~~~~~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~~~~~~~v~~~~~~~~ 159 (197)
.+.++|++|+|++.+++++.+.+..++..+..+.. +..++.++||+||||||||++|+++|++++.+++.++++++.+.
T Consensus 12 ~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~-~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~~ 90 (322)
T 3eie_A 12 KPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSK 90 (322)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCT-TCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHHHHHTT
T ss_pred CCCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhc-CCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchHHHhhc
Confidence 56789999999999999999999999988888776 34667899999999999999999999999999999999999999
Q ss_pred ccCccHHHHHHHHHHHhcCCCeEEEEcccCccCccc
Q psy6208 160 LAGESESNLRKAFEEADKNSPSIIFIDELDAIAPKR 195 (197)
Q Consensus 160 ~~~~~~~~~~~~~~~a~~~~~~vl~lDeid~l~~~r 195 (197)
+.+..+..++.+|..+....|+||||||+|.|.+++
T Consensus 91 ~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~ 126 (322)
T 3eie_A 91 WMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTR 126 (322)
T ss_dssp TGGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC-
T ss_pred ccchHHHHHHHHHHHHHhcCCeEEEechhhhhhccC
Confidence 999999999999999999999999999999999865
No 14
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.86 E-value=1.1e-21 Score=156.61 Aligned_cols=116 Identities=57% Similarity=0.997 Sum_probs=109.3
Q ss_pred cCCCCcccccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhhh
Q psy6208 80 SNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSK 159 (197)
Q Consensus 80 ~~~~~~~~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~~~~~~~v~~~~~~~~ 159 (197)
.+.++|++++|++.+++++.+.+..++..++.+..++...+.++||+||||||||++|+++++.++.+++.+++.++...
T Consensus 11 ~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~ 90 (285)
T 3h4m_A 11 RPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELVKK 90 (285)
T ss_dssp SCCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEGGGGCCC
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehHHHHHh
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCccHHHHHHHHHHHhcCCCeEEEEcccCccCccc
Q psy6208 160 LAGESESNLRKAFEEADKNSPSIIFIDELDAIAPKR 195 (197)
Q Consensus 160 ~~~~~~~~~~~~~~~a~~~~~~vl~lDeid~l~~~r 195 (197)
+.+.....+..+|..+....|+||||||+|.+.+++
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~ 126 (285)
T 3h4m_A 91 FIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKR 126 (285)
T ss_dssp STTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCC
T ss_pred ccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccC
Confidence 999888899999999999899999999999997654
No 15
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.86 E-value=1.2e-21 Score=161.80 Aligned_cols=116 Identities=45% Similarity=0.782 Sum_probs=101.5
Q ss_pred hcCCCCcccccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhh
Q psy6208 79 ASNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMS 158 (197)
Q Consensus 79 ~~~~~~~~~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~~~~~~~v~~~~~~~ 158 (197)
..+.++|++|+|++.+++.+.+.+.+++..+..+.. +..++.++||+||||||||++|+++|++++.+++.++++++..
T Consensus 44 ~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~~~~l~~ 122 (355)
T 2qp9_X 44 EKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVS 122 (355)
T ss_dssp ---CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCS-SCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEHHHHHS
T ss_pred cCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhc-CCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEeeHHHHhh
Confidence 356789999999999999999999999999888876 4567789999999999999999999999999999999999999
Q ss_pred hccCccHHHHHHHHHHHhcCCCeEEEEcccCccCccc
Q psy6208 159 KLAGESESNLRKAFEEADKNSPSIIFIDELDAIAPKR 195 (197)
Q Consensus 159 ~~~~~~~~~~~~~~~~a~~~~~~vl~lDeid~l~~~r 195 (197)
.+.+..+..++.+|..+....|+||||||+|.|.++|
T Consensus 123 ~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r 159 (355)
T 2qp9_X 123 KWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTR 159 (355)
T ss_dssp CC---CHHHHHHHHHHHHHTSSEEEEEECGGGGTC--
T ss_pred hhcchHHHHHHHHHHHHHHcCCeEEEEechHhhcccC
Confidence 9999999999999999988889999999999999865
No 16
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.85 E-value=4.3e-21 Score=151.15 Aligned_cols=113 Identities=39% Similarity=0.758 Sum_probs=92.4
Q ss_pred CCCcccccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhhhcc
Q psy6208 82 AVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLA 161 (197)
Q Consensus 82 ~~~~~~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~~~~~~~v~~~~~~~~~~ 161 (197)
.++|++++|++..++++.+.+.. +..+..+..+|...+.++||+||||||||++|+++|++++.+++.++++++...+.
T Consensus 2 ~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~ 80 (262)
T 2qz4_A 2 GVSFKDVAGMHEAKLEVREFVDY-LKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVIG 80 (262)
T ss_dssp CCCTTSSCSCHHHHHHHHHHHHH-HHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSSSST
T ss_pred CCCHHHhCCHHHHHHHHHHHHHH-HHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHhhcc
Confidence 57899999999999999998876 67778888888889999999999999999999999999999999999999988888
Q ss_pred CccHHHHHHHHHHHhcCCCeEEEEcccCccCccc
Q psy6208 162 GESESNLRKAFEEADKNSPSIIFIDELDAIAPKR 195 (197)
Q Consensus 162 ~~~~~~~~~~~~~a~~~~~~vl~lDeid~l~~~r 195 (197)
+.....+..+|..+....|++|||||+|.+..++
T Consensus 81 ~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~ 114 (262)
T 2qz4_A 81 GLGAARVRSLFKEARARAPCIVYIDEIDAVGKKR 114 (262)
T ss_dssp THHHHHHHHHHHHHHHTCSEEEEEECC-------
T ss_pred ChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccc
Confidence 8888888999999988889999999999997654
No 17
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.85 E-value=1.1e-20 Score=161.01 Aligned_cols=116 Identities=44% Similarity=0.834 Sum_probs=105.7
Q ss_pred cCCCCcccccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhhh
Q psy6208 80 SNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSK 159 (197)
Q Consensus 80 ~~~~~~~~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~~~~~~~v~~~~~~~~ 159 (197)
.+.++|+||+|.+++++++.+.+.. +..+..+..++...+.+++|+||||||||++++++|.+.+.+++.++++++...
T Consensus 10 ~~~~~f~di~G~~~~~~~l~e~v~~-l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~is~~~~~~~ 88 (476)
T 2ce7_A 10 NKRVTFKDVGGAEEAIEELKEVVEF-LKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVEL 88 (476)
T ss_dssp SCCCCGGGCCSCHHHHHHHHHHHHH-HHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGTTTC
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHHH-hhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCCHHHHHHH
Confidence 3468999999999999999998876 667888889998999999999999999999999999999999999999999999
Q ss_pred ccCccHHHHHHHHHHHhcCCCeEEEEcccCccCcccC
Q psy6208 160 LAGESESNLRKAFEEADKNSPSIIFIDELDAIAPKRE 196 (197)
Q Consensus 160 ~~~~~~~~~~~~~~~a~~~~~~vl~lDeid~l~~~r~ 196 (197)
+.+.....++.+|+.+....|+||||||+|.++++|+
T Consensus 89 ~~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~ 125 (476)
T 2ce7_A 89 FVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRG 125 (476)
T ss_dssp CTTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC--
T ss_pred HhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcc
Confidence 9888888899999999998999999999999988763
No 18
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.84 E-value=5.9e-21 Score=152.35 Aligned_cols=116 Identities=43% Similarity=0.814 Sum_probs=99.8
Q ss_pred cCCCCcccccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhhh
Q psy6208 80 SNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSK 159 (197)
Q Consensus 80 ~~~~~~~~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~~~~~~~v~~~~~~~~ 159 (197)
.+.++|+||+|++++++++.+.+.+++..+..++.+++..+.+++|+||||||||+|+++++..++..++.+++.++.+.
T Consensus 4 ~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~~~ 83 (274)
T 2x8a_A 4 VPNVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNM 83 (274)
T ss_dssp --------CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCSS
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHHhh
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred ccCccHHHHHHHHHHHhcCCCeEEEEcccCccCccc
Q psy6208 160 LAGESESNLRKAFEEADKNSPSIIFIDELDAIAPKR 195 (197)
Q Consensus 160 ~~~~~~~~~~~~~~~a~~~~~~vl~lDeid~l~~~r 195 (197)
+.++.+..+..+|+.+....|+++++||+|.+.+.|
T Consensus 84 ~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r 119 (274)
T 2x8a_A 84 YVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRR 119 (274)
T ss_dssp TTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC--
T ss_pred hhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhccc
Confidence 777788889999999877789999999999988754
No 19
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.83 E-value=1.7e-20 Score=147.93 Aligned_cols=116 Identities=43% Similarity=0.806 Sum_probs=100.5
Q ss_pred cCCCCcccccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhhh
Q psy6208 80 SNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSK 159 (197)
Q Consensus 80 ~~~~~~~~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~~~~~~~v~~~~~~~~ 159 (197)
.+..+|++|+|.+.+++++.+.+.. +..+..+..++...+.+++|+||||||||++++++++.++.+++.++++++...
T Consensus 6 ~~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~~~~~~~ 84 (257)
T 1lv7_A 6 QIKTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM 84 (257)
T ss_dssp SSCCCGGGSCSCHHHHHHTHHHHHH-HHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSSTTS
T ss_pred CCCCCHHHhcCcHHHHHHHHHHHHH-HhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeHHHHHHH
Confidence 4578999999999999999988765 667777777777888899999999999999999999999999999999999888
Q ss_pred ccCccHHHHHHHHHHHhcCCCeEEEEcccCccCcccC
Q psy6208 160 LAGESESNLRKAFEEADKNSPSIIFIDELDAIAPKRE 196 (197)
Q Consensus 160 ~~~~~~~~~~~~~~~a~~~~~~vl~lDeid~l~~~r~ 196 (197)
+.+.....+..+|+.+....|+++||||+|.+.++++
T Consensus 85 ~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~ 121 (257)
T 1lv7_A 85 FVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRG 121 (257)
T ss_dssp CCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCS
T ss_pred hhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCC
Confidence 8888888999999999888899999999999988653
No 20
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.83 E-value=2.6e-20 Score=149.58 Aligned_cols=116 Identities=43% Similarity=0.721 Sum_probs=104.3
Q ss_pred cCCCCcccccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhhh
Q psy6208 80 SNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSK 159 (197)
Q Consensus 80 ~~~~~~~~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~~~~~~~v~~~~~~~~ 159 (197)
.+..+|++++|++.+++.+.+.+..+..+++.+..++ .++.+++|+||||||||++|+++|++++.+++.++|+++...
T Consensus 15 ~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~~ 93 (297)
T 3b9p_A 15 GAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLR-APAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSK 93 (297)
T ss_dssp SSCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGG-CCCSEEEEESSSSSCHHHHHHHHHHHTTCEEEEEESTTTSSS
T ss_pred CCCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCC-CCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEeeHHHHhhc
Confidence 4578999999999999999999998888888777655 457899999999999999999999999999999999999998
Q ss_pred ccCccHHHHHHHHHHHhcCCCeEEEEcccCccCcccC
Q psy6208 160 LAGESESNLRKAFEEADKNSPSIIFIDELDAIAPKRE 196 (197)
Q Consensus 160 ~~~~~~~~~~~~~~~a~~~~~~vl~lDeid~l~~~r~ 196 (197)
+.+..+..++.+|..+....|++|||||+|.+..+++
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~ 130 (297)
T 3b9p_A 94 YVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERS 130 (297)
T ss_dssp SCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-
T ss_pred ccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccc
Confidence 8888888899999999888899999999999987653
No 21
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.83 E-value=9e-21 Score=160.77 Aligned_cols=116 Identities=44% Similarity=0.751 Sum_probs=96.4
Q ss_pred cCCCCcccccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHh-CCeEEEEechhhhh
Q psy6208 80 SNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANET-GAFFFLINGPEIMS 158 (197)
Q Consensus 80 ~~~~~~~~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~-~~~~~~v~~~~~~~ 158 (197)
.+.++|++|+|++.+++.+.+.+.+++.++..+... ..++.++||+||||||||++|+++|+++ +.+++.++++++.+
T Consensus 128 ~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~-~~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~l~~ 206 (444)
T 2zan_A 128 RPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGK-RTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVS 206 (444)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGG-GCCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC----
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhcc-CCCCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHHHHh
Confidence 567899999999999999999999998888877642 3567899999999999999999999999 88999999999999
Q ss_pred hccCccHHHHHHHHHHHhcCCCeEEEEcccCccCcccC
Q psy6208 159 KLAGESESNLRKAFEEADKNSPSIIFIDELDAIAPKRE 196 (197)
Q Consensus 159 ~~~~~~~~~~~~~~~~a~~~~~~vl~lDeid~l~~~r~ 196 (197)
.+.+..+..++.+|..+....|+||||||+|.+.++|.
T Consensus 207 ~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~ 244 (444)
T 2zan_A 207 KWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRS 244 (444)
T ss_dssp -----CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSS
T ss_pred hhcchHHHHHHHHHHHHHHcCCeEEEEechHhhccCCC
Confidence 99888888899999999888899999999999987653
No 22
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.82 E-value=2.9e-20 Score=153.52 Aligned_cols=115 Identities=43% Similarity=0.804 Sum_probs=104.1
Q ss_pred cCCCCcccccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhhh
Q psy6208 80 SNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSK 159 (197)
Q Consensus 80 ~~~~~~~~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~~~~~~~v~~~~~~~~ 159 (197)
.+..+|++|+|++.+++++.+.+.+++..+..+...+ ..+.++||+||||||||++|+++|++++.+++.++++++...
T Consensus 78 ~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i~~~~l~~~ 156 (357)
T 3d8b_A 78 GPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLR-GPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTSK 156 (357)
T ss_dssp SCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGG-SCCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEEEGGGGCCS
T ss_pred CCCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhcc-CCCceEEEECCCCCCHHHHHHHHHHHcCCeEEEEehHHhhcc
Confidence 4678999999999999999999998888888776654 567899999999999999999999999999999999999999
Q ss_pred ccCccHHHHHHHHHHHhcCCCeEEEEcccCccCccc
Q psy6208 160 LAGESESNLRKAFEEADKNSPSIIFIDELDAIAPKR 195 (197)
Q Consensus 160 ~~~~~~~~~~~~~~~a~~~~~~vl~lDeid~l~~~r 195 (197)
+.+..+..++.+|..+....|++|||||+|.|.+++
T Consensus 157 ~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~ 192 (357)
T 3d8b_A 157 WVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQR 192 (357)
T ss_dssp STTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC-
T ss_pred ccchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccC
Confidence 988888889999999988889999999999998765
No 23
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.82 E-value=3.8e-20 Score=154.36 Aligned_cols=115 Identities=44% Similarity=0.747 Sum_probs=96.6
Q ss_pred cCCCCcccccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhhh
Q psy6208 80 SNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSK 159 (197)
Q Consensus 80 ~~~~~~~~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~~~~~~~v~~~~~~~~ 159 (197)
.+.++|++|+|++.+++.+.+++..+...++.+..++ .++.++||+||||||||++|+++|++++.+++.++|.++...
T Consensus 109 ~~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~vLL~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~~ 187 (389)
T 3vfd_A 109 GTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLR-APARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSK 187 (389)
T ss_dssp SCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGG-CCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEECSCCC---
T ss_pred CCCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccC-CCCceEEEECCCCCCHHHHHHHHHHhhcCcEEEeeHHHhhcc
Confidence 4567899999999999999999998888888777665 457899999999999999999999999999999999999999
Q ss_pred ccCccHHHHHHHHHHHhcCCCeEEEEcccCccCccc
Q psy6208 160 LAGESESNLRKAFEEADKNSPSIIFIDELDAIAPKR 195 (197)
Q Consensus 160 ~~~~~~~~~~~~~~~a~~~~~~vl~lDeid~l~~~r 195 (197)
+.+..+..+..+|..+....|+||||||||.|..++
T Consensus 188 ~~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~ 223 (389)
T 3vfd_A 188 YVGEGEKLVRALFAVARELQPSIIFIDQVDSLLCER 223 (389)
T ss_dssp ----CHHHHHHHHHHHHHSSSEEEEEETGGGGC---
T ss_pred ccchHHHHHHHHHHHHHhcCCeEEEEECchhhcccC
Confidence 999999999999999999889999999999997654
No 24
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.81 E-value=8.8e-21 Score=150.21 Aligned_cols=115 Identities=43% Similarity=0.763 Sum_probs=101.3
Q ss_pred cCCCCcccccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhhh
Q psy6208 80 SNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSK 159 (197)
Q Consensus 80 ~~~~~~~~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~~~~~~~v~~~~~~~~ 159 (197)
.+.++|++++|.+.+++++.+.+.. +..+..+..++...+.+++|+||||||||++|+++|++++.+++.+++..+...
T Consensus 5 ~~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~ 83 (268)
T 2r62_A 5 KPNVRFKDMAGNEEAKEEVVEIVDF-LKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEM 83 (268)
T ss_dssp CCCCCSTTSSSCTTTHHHHHHHHHH-HHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTTTTS
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHHH-HHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEechHHHHHh
Confidence 4568899999999999999998775 778888888888889999999999999999999999999999999999998888
Q ss_pred ccCccHHHHHHHHHHHhcCCCeEEEEcccCccCccc
Q psy6208 160 LAGESESNLRKAFEEADKNSPSIIFIDELDAIAPKR 195 (197)
Q Consensus 160 ~~~~~~~~~~~~~~~a~~~~~~vl~lDeid~l~~~r 195 (197)
+.+.....++.+|+.+....|++|||||+|.|.+++
T Consensus 84 ~~~~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~ 119 (268)
T 2r62_A 84 FVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSR 119 (268)
T ss_dssp CSSSCSSSSSTTHHHHHHSCSCEEEESCGGGTTC--
T ss_pred hcchHHHHHHHHHHHHHhcCCeEEEEeChhhhcccc
Confidence 777766667778888888789999999999998764
No 25
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.78 E-value=6.7e-19 Score=150.73 Aligned_cols=115 Identities=40% Similarity=0.767 Sum_probs=103.4
Q ss_pred CCCCcccccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhhhc
Q psy6208 81 NAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKL 160 (197)
Q Consensus 81 ~~~~~~~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~~~~~~~v~~~~~~~~~ 160 (197)
+.++|+|++|++.++.++.+.+.. +..+..+..++...+.+++|+||||||||+|++++|...+.+++.++++++...+
T Consensus 26 ~~~~f~dv~G~~~~k~~l~~lv~~-l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~~~i~i~g~~~~~~~ 104 (499)
T 2dhr_A 26 PKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMF 104 (499)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHH-HHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTCCEEEEEGGGGTSSC
T ss_pred CCCCHHHcCCcHHHHHHHHHHHHH-hhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEehhHHHHhh
Confidence 578999999999999999998775 5677788888888899999999999999999999999999999999999998888
Q ss_pred cCccHHHHHHHHHHHhcCCCeEEEEcccCccCcccC
Q psy6208 161 AGESESNLRKAFEEADKNSPSIIFIDELDAIAPKRE 196 (197)
Q Consensus 161 ~~~~~~~~~~~~~~a~~~~~~vl~lDeid~l~~~r~ 196 (197)
.+.....++.+|+.+....|+++||||+|.+..+++
T Consensus 105 ~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~ 140 (499)
T 2dhr_A 105 VGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRG 140 (499)
T ss_dssp TTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSS
T ss_pred hhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhc
Confidence 888888888999988777799999999999987653
No 26
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.76 E-value=5.1e-18 Score=133.42 Aligned_cols=115 Identities=40% Similarity=0.773 Sum_probs=99.6
Q ss_pred cCCCCcccccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhhh
Q psy6208 80 SNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSK 159 (197)
Q Consensus 80 ~~~~~~~~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~~~~~~~v~~~~~~~~ 159 (197)
.+.++|++++|.+..+.++++.... +..+..+..++...+.+++|+||||||||+++++++..++..++.+++.++...
T Consensus 10 ~~~~~~~~i~g~~~~~~~l~~l~~~-~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~~~~~~~ 88 (254)
T 1ixz_A 10 APKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEM 88 (254)
T ss_dssp CCSCCGGGCCSCHHHHHHHHHHHHH-HHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHS
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHHH-HHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeeHHHHHHH
Confidence 4678999999999999999987765 456677888888888899999999999999999999999999999999988877
Q ss_pred ccCccHHHHHHHHHHHhcCCCeEEEEcccCccCccc
Q psy6208 160 LAGESESNLRKAFEEADKNSPSIIFIDELDAIAPKR 195 (197)
Q Consensus 160 ~~~~~~~~~~~~~~~a~~~~~~vl~lDeid~l~~~r 195 (197)
+.+.....+..+|+.+....|+++++||+|.+..++
T Consensus 89 ~~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~ 124 (254)
T 1ixz_A 89 FVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKR 124 (254)
T ss_dssp CTTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC--
T ss_pred HhhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhccc
Confidence 777777788889999877779999999999887654
No 27
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.75 E-value=1.5e-18 Score=147.48 Aligned_cols=109 Identities=28% Similarity=0.360 Sum_probs=93.2
Q ss_pred hcCCCCcccccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHhC--CeEEEEechhh
Q psy6208 79 ASNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANETG--AFFFLINGPEI 156 (197)
Q Consensus 79 ~~~~~~~~~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~~--~~~~~v~~~~~ 156 (197)
..+...|++++|++.+++.+..++.... .+..++.++||+||||||||++|+++|++++ .+++.++++++
T Consensus 30 ~~~~~~~~~iiG~~~~~~~l~~~~~~~~--------~~~~~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~ 101 (456)
T 2c9o_A 30 GLAKQAASGLVGQENAREACGVIVELIK--------SKKMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEV 101 (456)
T ss_dssp SCBCSEETTEESCHHHHHHHHHHHHHHH--------TTCCTTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGG
T ss_pred cChhhchhhccCHHHHHHHHHHHHHHHH--------hCCCCCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHH
Confidence 3456778999999999999988776432 1345668899999999999999999999998 89999999999
Q ss_pred hhhccCccHHHHHHHHHHH---hcCCCeEEEEcccCccCcccC
Q psy6208 157 MSKLAGESESNLRKAFEEA---DKNSPSIIFIDELDAIAPKRE 196 (197)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~a---~~~~~~vl~lDeid~l~~~r~ 196 (197)
.+.+.++.+. +...|+.+ +...|++|||||+|.++++|.
T Consensus 102 ~~~~~~~~~~-~~~~f~~a~~~~~~~~~il~iDEid~l~~~r~ 143 (456)
T 2c9o_A 102 YSTEIKKTEV-LMENFRRAIGLRIKETKEVYEGEVTELTPCET 143 (456)
T ss_dssp CCSSSCHHHH-HHHHHHHTEEEEEEEEEEEEEEEEEEEEEC--
T ss_pred HHHhhhhhHH-HHHHHHHHHhhhhcCCcEEEEechhhcccccC
Confidence 9999998886 89999998 677899999999999998774
No 28
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.72 E-value=4.6e-19 Score=159.86 Aligned_cols=116 Identities=45% Similarity=0.864 Sum_probs=108.9
Q ss_pred CCCCcccccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhhhc
Q psy6208 81 NAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKL 160 (197)
Q Consensus 81 ~~~~~~~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~~~~~~~v~~~~~~~~~ 160 (197)
+.++|++++|++.+++.+.+.+.++...+..+..+++.++.+++|+||||||||++|+++|..++.+++.++++++.+.+
T Consensus 472 ~~v~~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~~~~ 551 (806)
T 1ypw_A 472 PQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMW 551 (806)
T ss_dssp CCCSSCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCCCCCSSSTTCC
T ss_pred ccccccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCCCEEEEechHhhhhh
Confidence 46789999999999999999999999998888888888999999999999999999999999999999999999999999
Q ss_pred cCccHHHHHHHHHHHhcCCCeEEEEcccCccCcccC
Q psy6208 161 AGESESNLRKAFEEADKNSPSIIFIDELDAIAPKRE 196 (197)
Q Consensus 161 ~~~~~~~~~~~~~~a~~~~~~vl~lDeid~l~~~r~ 196 (197)
.++.+..++.+|+.++...|++|||||+|.+.++|.
T Consensus 552 ~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~ 587 (806)
T 1ypw_A 552 FGESEANVREIFDKARQAAPCVLFFDELDSIAKARG 587 (806)
T ss_dssp TTTSSHHHHHHHHHHHHHCSBCCCCSSHHHHCCTTT
T ss_pred cCccHHHHHHHHHHHHhcCCeEEEEEChhhhhhhcc
Confidence 999999999999999988899999999999988763
No 29
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.72 E-value=4.1e-17 Score=130.04 Aligned_cols=114 Identities=40% Similarity=0.776 Sum_probs=98.8
Q ss_pred CCCCcccccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhhhc
Q psy6208 81 NAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKL 160 (197)
Q Consensus 81 ~~~~~~~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~~~~~~~v~~~~~~~~~ 160 (197)
+.++|++++|.+..+.++.+.... +..+..+..++...+.+++|+||||||||+|+++++..++..++.+++.++...+
T Consensus 35 ~~~~~~~i~g~~~~~~~l~~l~~~-~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~~~i~~~~~~~~~~~ 113 (278)
T 1iy2_A 35 PKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMF 113 (278)
T ss_dssp CCCCGGGSSSCHHHHHHHHHHHHH-HHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHST
T ss_pred CCCCHHHhCChHHHHHHHHHHHHH-HHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcCCCEEEecHHHHHHHH
Confidence 578999999999999999987765 4566777788888888899999999999999999999999999999999888777
Q ss_pred cCccHHHHHHHHHHHhcCCCeEEEEcccCccCccc
Q psy6208 161 AGESESNLRKAFEEADKNSPSIIFIDELDAIAPKR 195 (197)
Q Consensus 161 ~~~~~~~~~~~~~~a~~~~~~vl~lDeid~l~~~r 195 (197)
.+.....+..+|+.+....|+++++||+|.+...+
T Consensus 114 ~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~ 148 (278)
T 1iy2_A 114 VGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKR 148 (278)
T ss_dssp TTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC-
T ss_pred hhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhccc
Confidence 77777778889999887779999999999886543
No 30
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.70 E-value=1.7e-17 Score=133.47 Aligned_cols=80 Identities=29% Similarity=0.420 Sum_probs=65.7
Q ss_pred CCCCCCceEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhhhccCccHHHHHHHHHHH----hcCCCeEEEEcccCcc
Q psy6208 116 GVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEA----DKNSPSIIFIDELDAI 191 (197)
Q Consensus 116 ~~~~~~~ill~G~~GtGKT~la~ala~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~a----~~~~~~vl~lDeid~l 191 (197)
+...+.++||+||||||||++|+++|++++.+++.++++++.+.+.|..+..++..|+.+ +...|+||||||||.+
T Consensus 32 ~~~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~vl~iDEiD~~ 111 (293)
T 3t15_A 32 NIKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDAG 111 (293)
T ss_dssp TCCCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHCC---HHHHHHHHHHHHHHHHHTTSSCCCEEEECCC--
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhhccCchhHHHHHHHHHHHHHHHhcCCCeEEEEechhhh
Confidence 356788999999999999999999999999999999999999999999998999999888 4677999999999999
Q ss_pred Cccc
Q psy6208 192 APKR 195 (197)
Q Consensus 192 ~~~r 195 (197)
.+++
T Consensus 112 ~~~~ 115 (293)
T 3t15_A 112 AGRM 115 (293)
T ss_dssp ----
T ss_pred cCCC
Confidence 8854
No 31
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.67 E-value=9.7e-17 Score=135.83 Aligned_cols=172 Identities=15% Similarity=0.211 Sum_probs=72.4
Q ss_pred ccCCCcchhhHHHHhHHHhhhcCcccccCCEEEEecCcceEEEEEEEecCCCeEEEcCceEEEEcCCCCcchhHHhhcCC
Q psy6208 3 LVPEGEMSNLFEVYLKPYFLEAYRPVHKDDLFIVRGGMRAVEFKIVDTDPAPYCIVAADTVIHCEGDPIKREEEEEASNA 82 (197)
Q Consensus 3 ~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (197)
...+.....++|.|..+|+.++|.......+..+.+....+.|.+....+ .. ..... ....+ ......+++.
T Consensus 30 ~~~~~~~~~~p~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~----~~~~~-~~~~~--~~~~~~l~~~ 101 (440)
T 2z4s_A 30 IEGNKVVFSVGNLFIKEWLEKKYYSVLSKAVKVVLGNDATFEITYEAFEP-HS----SYSEP-LVKKR--AVLLTPLNPD 101 (440)
T ss_dssp --------------------------------------------------------------------------CCCCTT
T ss_pred eeCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHHHcCCCeeEEEEeCCCCC-Cc----cCccc-ccCCC--CccccCCCCC
Confidence 34567888999999999999999988888777766666666665532110 00 00000 00000 0012346678
Q ss_pred CCccccc-CcH--HHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHh-----CCeEEEEech
Q psy6208 83 VGYDDIG-GCR--KQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANET-----GAFFFLINGP 154 (197)
Q Consensus 83 ~~~~~i~-g~~--~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~-----~~~~~~v~~~ 154 (197)
++|++++ |.+ .....+......+ .. ..+++|+||||+|||||++++++.+ +.+++++++.
T Consensus 102 ~tfd~fv~g~~n~~a~~~~~~~a~~~-----------~~-~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~ 169 (440)
T 2z4s_A 102 YTFENFVVGPGNSFAYHAALEVAKHP-----------GR-YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSE 169 (440)
T ss_dssp CSGGGCCCCTTTHHHHHHHHHHHHST-----------TS-SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHH
T ss_pred CChhhcCCCCchHHHHHHHHHHHhCC-----------CC-CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHH
Confidence 8999976 533 3333444433322 11 5689999999999999999999988 7889999998
Q ss_pred hhhhhccCccHHHHHHHHHHHhcCCCeEEEEcccCccCcc
Q psy6208 155 EIMSKLAGESESNLRKAFEEADKNSPSIIFIDELDAIAPK 194 (197)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~a~~~~~~vl~lDeid~l~~~ 194 (197)
.+...+...........|.......+++|||||+|.+..+
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~IDEi~~l~~~ 209 (440)
T 2z4s_A 170 KFLNDLVDSMKEGKLNEFREKYRKKVDILLIDDVQFLIGK 209 (440)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHTTTCSEEEEECGGGGSSC
T ss_pred HHHHHHHHHHHcccHHHHHHHhcCCCCEEEEeCcccccCC
Confidence 8765543322221122344444436899999999999864
No 32
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.64 E-value=1.3e-15 Score=122.62 Aligned_cols=105 Identities=21% Similarity=0.351 Sum_probs=86.0
Q ss_pred cccCcHHHHHHHHHHHHhcccChhhHhhhCCC---CCCceEEECCCCCcHHHHHHHHHHHh-------CCeEEEEechhh
Q psy6208 87 DIGGCRKQLAQIKEMVELPLRHPSLFKAIGVK---PPRGILLYGPPGTGKTLIARAVANET-------GAFFFLINGPEI 156 (197)
Q Consensus 87 ~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~---~~~~ill~G~~GtGKT~la~ala~~~-------~~~~~~v~~~~~ 156 (197)
+++|++.+++++.+.+..... +......|+. ...++||+||||||||++|+++++.+ ..+++.+++.++
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~-~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l 110 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLV-ERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDL 110 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHH-HHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGT
T ss_pred HccChHHHHHHHHHHHHHHHh-HHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHh
Confidence 799999999999998876542 4444555543 34469999999999999999999887 338999999999
Q ss_pred hhhccCccHHHHHHHHHHHhcCCCeEEEEcccCccCccc
Q psy6208 157 MSKLAGESESNLRKAFEEADKNSPSIIFIDELDAIAPKR 195 (197)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~a~~~~~~vl~lDeid~l~~~r 195 (197)
...+.+.....+...|+.+ .+++|||||+|.|.+.+
T Consensus 111 ~~~~~g~~~~~~~~~~~~~---~~~vl~iDEid~l~~~~ 146 (309)
T 3syl_A 111 VGQYIGHTAPKTKEVLKRA---MGGVLFIDEAYYLYRPD 146 (309)
T ss_dssp CCSSTTCHHHHHHHHHHHH---TTSEEEEETGGGSCCCC
T ss_pred hhhcccccHHHHHHHHHhc---CCCEEEEEChhhhccCC
Confidence 9999988888888888877 35799999999997554
No 33
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.58 E-value=9.1e-15 Score=108.46 Aligned_cols=101 Identities=21% Similarity=0.395 Sum_probs=77.8
Q ss_pred CCCCcccccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHh----------CCeEEE
Q psy6208 81 NAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANET----------GAFFFL 150 (197)
Q Consensus 81 ~~~~~~~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~----------~~~~~~ 150 (197)
.+..|++++|.+..++.+.+.+.. ....+++|+||+|||||++++++++.+ +.++++
T Consensus 17 ~~~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~ 83 (187)
T 2p65_A 17 RAGKLDPVIGRDTEIRRAIQILSR-------------RTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVS 83 (187)
T ss_dssp HTTCSCCCCSCHHHHHHHHHHHTS-------------SSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEE
T ss_pred hccccchhhcchHHHHHHHHHHhC-------------CCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEE
Confidence 356789999999999988887643 345689999999999999999999987 778899
Q ss_pred Eechhhhhh--ccCccHHHHHHHHHHHhcC-CCeEEEEcccCccCcc
Q psy6208 151 INGPEIMSK--LAGESESNLRKAFEEADKN-SPSIIFIDELDAIAPK 194 (197)
Q Consensus 151 v~~~~~~~~--~~~~~~~~~~~~~~~a~~~-~~~vl~lDeid~l~~~ 194 (197)
+++..+... +.+.....+..++..+... .+.+|+|||+|.+.+.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~ 130 (187)
T 2p65_A 84 LDLSSLIAGAKYRGDFEERLKSILKEVQDAEGQVVMFIDEIHTVVGA 130 (187)
T ss_dssp ECHHHHHHHCCSHHHHHHHHHHHHHHHHHTTTSEEEEETTGGGGSSS
T ss_pred EeHHHhhcCCCchhHHHHHHHHHHHHHHhcCCceEEEEeCHHHhccc
Confidence 988777533 2233344566666655443 6789999999999844
No 34
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.58 E-value=1.2e-14 Score=108.06 Aligned_cols=101 Identities=23% Similarity=0.409 Sum_probs=77.9
Q ss_pred CCCCcccccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHh----------CCeEEE
Q psy6208 81 NAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANET----------GAFFFL 150 (197)
Q Consensus 81 ~~~~~~~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~----------~~~~~~ 150 (197)
.+..|+++.|.++.++++.+.+.. ..+.+++|+||+|+|||++++++++.+ +.++++
T Consensus 17 ~~~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~ 83 (195)
T 1jbk_A 17 EQGKLDPVIGRDEEIRRTIQVLQR-------------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLA 83 (195)
T ss_dssp HTTCSCCCCSCHHHHHHHHHHHTS-------------SSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEE
T ss_pred hhccccccccchHHHHHHHHHHhc-------------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEE
Confidence 356789999999999998887643 345679999999999999999999986 688999
Q ss_pred Eechhhhh--hccCccHHHHHHHHHHHh-cCCCeEEEEcccCccCcc
Q psy6208 151 INGPEIMS--KLAGESESNLRKAFEEAD-KNSPSIIFIDELDAIAPK 194 (197)
Q Consensus 151 v~~~~~~~--~~~~~~~~~~~~~~~~a~-~~~~~vl~lDeid~l~~~ 194 (197)
+++..+.. .+.+.....+..++.... ...+.+|+|||+|.+.++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~ 130 (195)
T 1jbk_A 84 LDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGA 130 (195)
T ss_dssp ECHHHHHTTTCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT-
T ss_pred eeHHHHhccCCccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhcc
Confidence 99887763 233334455666666543 355789999999999754
No 35
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.57 E-value=1.7e-15 Score=124.97 Aligned_cols=109 Identities=25% Similarity=0.352 Sum_probs=79.1
Q ss_pred cccCcHHHHHHHHHHHHhcccChhhHhh-hC-CCCCCceEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhhh-ccCc
Q psy6208 87 DIGGCRKQLAQIKEMVELPLRHPSLFKA-IG-VKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSK-LAGE 163 (197)
Q Consensus 87 ~i~g~~~~~~~l~~~v~~~~~~~~~~~~-~~-~~~~~~ill~G~~GtGKT~la~ala~~~~~~~~~v~~~~~~~~-~~~~ 163 (197)
.++|++.+++.+...+............ .. ..++.++||+||||||||++|+++|+.++.+++.++|.++... +.|.
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~~~l~~~~~~g~ 95 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGE 95 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHTTCHHHHH
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEechHHhcccccccc
Confidence 3799999999999888533221110000 01 1256789999999999999999999999999999999987643 5554
Q ss_pred c-HHHHHHHHHHH----hcCCCeEEEEcccCccCccc
Q psy6208 164 S-ESNLRKAFEEA----DKNSPSIIFIDELDAIAPKR 195 (197)
Q Consensus 164 ~-~~~~~~~~~~a----~~~~~~vl~lDeid~l~~~r 195 (197)
. ...+..++..+ ....+++|||||+|.+.+++
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~~ 132 (363)
T 3hws_A 96 DVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRKS 132 (363)
T ss_dssp HHTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCCS
T ss_pred cHHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhcccc
Confidence 3 34556666554 22346899999999998874
No 36
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.56 E-value=3.2e-15 Score=108.02 Aligned_cols=88 Identities=16% Similarity=0.221 Sum_probs=68.1
Q ss_pred cccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHh---CCeEEEEechhhhhhccCc
Q psy6208 87 DIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANET---GAFFFLINGPEIMSKLAGE 163 (197)
Q Consensus 87 ~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~---~~~~~~v~~~~~~~~~~~~ 163 (197)
+++|.+..++++.+.+... .....+++|+||||||||++|+++++.. +.+++ ++|..+...
T Consensus 2 ~iiG~s~~~~~~~~~~~~~-----------a~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~~---- 65 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQL-----------SETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPDNA---- 65 (145)
T ss_dssp --CCSSHHHHHHHHHHHHH-----------TTCCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTTTS----
T ss_pred CceeCCHHHHHHHHHHHHH-----------hCCCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCCcc----
Confidence 5789999999998888654 2456789999999999999999999987 67888 999877544
Q ss_pred cHHHHHHHHHHHhcCCCeEEEEcccCccCccc
Q psy6208 164 SESNLRKAFEEADKNSPSIIFIDELDAIAPKR 195 (197)
Q Consensus 164 ~~~~~~~~~~~a~~~~~~vl~lDeid~l~~~r 195 (197)
......++.+. .++|||||+|.+.+..
T Consensus 66 --~~~~~~~~~a~---~g~l~ldei~~l~~~~ 92 (145)
T 3n70_A 66 --PQLNDFIALAQ---GGTLVLSHPEHLTREQ 92 (145)
T ss_dssp --SCHHHHHHHHT---TSCEEEECGGGSCHHH
T ss_pred --hhhhcHHHHcC---CcEEEEcChHHCCHHH
Confidence 23345566654 3589999999998653
No 37
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.53 E-value=2.3e-14 Score=116.29 Aligned_cols=104 Identities=21% Similarity=0.302 Sum_probs=73.2
Q ss_pred hcCCCCccccc-C--cHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHh---CCeEEEEe
Q psy6208 79 ASNAVGYDDIG-G--CRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANET---GAFFFLIN 152 (197)
Q Consensus 79 ~~~~~~~~~i~-g--~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~---~~~~~~v~ 152 (197)
+++.++|++++ | .......+...+..+ .....+++|+||||||||++++++++.+ +.++++++
T Consensus 4 l~~~~~f~~fv~g~~~~~a~~~~~~~~~~~-----------~~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~ 72 (324)
T 1l8q_A 4 LNPKYTLENFIVGEGNRLAYEVVKEALENL-----------GSLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSS 72 (324)
T ss_dssp CCTTCCSSSCCCCTTTHHHHHHHHHHHHTT-----------TTSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCCCCcccCCCCCcHHHHHHHHHHHHhCc-----------CCCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence 45678999986 4 444555555555432 1245689999999999999999999988 88999999
Q ss_pred chhhhhhccCccHHHHHHHHHHHhcCCCeEEEEcccCccCcc
Q psy6208 153 GPEIMSKLAGESESNLRKAFEEADKNSPSIIFIDELDAIAPK 194 (197)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~vl~lDeid~l~~~ 194 (197)
+.++...+.+.........|..... .+++|||||+|.+..+
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~vL~iDEi~~l~~~ 113 (324)
T 1l8q_A 73 ADDFAQAMVEHLKKGTINEFRNMYK-SVDLLLLDDVQFLSGK 113 (324)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHH-TCSEEEEECGGGGTTC
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHhc-CCCEEEEcCcccccCC
Confidence 9888665543322222223333333 3789999999999864
No 38
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.53 E-value=2e-15 Score=108.93 Aligned_cols=87 Identities=14% Similarity=0.226 Sum_probs=67.5
Q ss_pred cccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhhhccCccHH
Q psy6208 87 DIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESES 166 (197)
Q Consensus 87 ~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~~~~~~~v~~~~~~~~~~~~~~~ 166 (197)
+++|.+..++++.+.+... .....+++|+||||||||++|+++++... +++.++|..+...+
T Consensus 5 ~~iG~s~~~~~l~~~~~~~-----------~~~~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~~~~~~~~~------ 66 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAA-----------AKRTSPVFLTGEAGSPFETVARYFHKNGT-PWVSPARVEYLIDM------ 66 (143)
T ss_dssp ---CCCHHHHHHHHHHHHH-----------HTCSSCEEEEEETTCCHHHHHGGGCCTTS-CEECCSSTTHHHHC------
T ss_pred CceeCCHHHHHHHHHHHHH-----------hCCCCcEEEECCCCccHHHHHHHHHHhCC-CeEEechhhCChHh------
Confidence 5789999999998888754 13456899999999999999999999888 99999998875543
Q ss_pred HHHHHHHHHhcCCCeEEEEcccCccCccc
Q psy6208 167 NLRKAFEEADKNSPSIIFIDELDAIAPKR 195 (197)
Q Consensus 167 ~~~~~~~~a~~~~~~vl~lDeid~l~~~r 195 (197)
....++.+. .++|||||+|.+.++.
T Consensus 67 -~~~~~~~a~---~~~l~lDei~~l~~~~ 91 (143)
T 3co5_A 67 -PMELLQKAE---GGVLYVGDIAQYSRNI 91 (143)
T ss_dssp -HHHHHHHTT---TSEEEEEECTTCCHHH
T ss_pred -hhhHHHhCC---CCeEEEeChHHCCHHH
Confidence 345566553 4689999999997653
No 39
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.53 E-value=5.8e-14 Score=111.25 Aligned_cols=104 Identities=26% Similarity=0.371 Sum_probs=74.7
Q ss_pred cccccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhhhccCcc
Q psy6208 85 YDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGES 164 (197)
Q Consensus 85 ~~~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~~~~~~~v~~~~~~~~~~~~~ 164 (197)
.+.+.|.+..++++....... .......+...+.++||+||||||||++|+++|+..+.+++.+++++. +.+..
T Consensus 32 ~~~~i~~~~~~~~i~~~~~~l---~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~~~---~~g~~ 105 (272)
T 1d2n_A 32 MNGIIKWGDPVTRVLDDGELL---VQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDK---MIGFS 105 (272)
T ss_dssp TTCCCCCSHHHHHHHHHHHHH---HHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGG---CTTCC
T ss_pred hcCCCCccHHHHHHHHHHHHH---HHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeCHHH---hcCCc
Confidence 356778887777766632111 011112223567789999999999999999999999999999988753 23322
Q ss_pred ----HHHHHHHHHHHhcCCCeEEEEcccCccCcc
Q psy6208 165 ----ESNLRKAFEEADKNSPSIIFIDELDAIAPK 194 (197)
Q Consensus 165 ----~~~~~~~~~~a~~~~~~vl~lDeid~l~~~ 194 (197)
...+..+|+.+....+++|||||+|.|.+.
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~ 139 (272)
T 1d2n_A 106 ETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDY 139 (272)
T ss_dssp HHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTC
T ss_pred hHHHHHHHHHHHHHHHhcCCcEEEEEChhhhhcc
Confidence 245677888887777899999999998543
No 40
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.52 E-value=7e-14 Score=113.89 Aligned_cols=100 Identities=22% Similarity=0.340 Sum_probs=77.2
Q ss_pred hcCCCCcccccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhh
Q psy6208 79 ASNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMS 158 (197)
Q Consensus 79 ~~~~~~~~~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~~~~~~~v~~~~~~~ 158 (197)
...+.+|++++|.+..++++..++...... .....++||+||||||||++|+++++.++.+++.++|..+.
T Consensus 22 ~~~p~~~~~iiG~~~~~~~l~~~l~~~~~~--------~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~~~~~~- 92 (338)
T 3pfi_A 22 SLRPSNFDGYIGQESIKKNLNVFIAAAKKR--------NECLDHILFSGPAGLGKTTLANIISYEMSANIKTTAAPMIE- 92 (338)
T ss_dssp -CCCCSGGGCCSCHHHHHHHHHHHHHHHHT--------TSCCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEEGGGCC-
T ss_pred ccCCCCHHHhCChHHHHHHHHHHHHHHHhc--------CCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEecchhcc-
Confidence 345668999999999999999988754211 23566899999999999999999999999999999997652
Q ss_pred hccCccHHHHHHHHHHHhcCCCeEEEEcccCccCcc
Q psy6208 159 KLAGESESNLRKAFEEADKNSPSIIFIDELDAIAPK 194 (197)
Q Consensus 159 ~~~~~~~~~~~~~~~~a~~~~~~vl~lDeid~l~~~ 194 (197)
....+...+.. ...+++|||||+|.+.+.
T Consensus 93 -----~~~~~~~~~~~--~~~~~vl~lDEi~~l~~~ 121 (338)
T 3pfi_A 93 -----KSGDLAAILTN--LSEGDILFIDEIHRLSPA 121 (338)
T ss_dssp -----SHHHHHHHHHT--CCTTCEEEEETGGGCCHH
T ss_pred -----chhHHHHHHHh--ccCCCEEEEechhhcCHH
Confidence 23344444433 245789999999998754
No 41
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.52 E-value=2e-14 Score=115.35 Aligned_cols=110 Identities=28% Similarity=0.412 Sum_probs=77.7
Q ss_pred ccccCcHHHHHHHHHHHHhcccChhhHhhh-CCCCCCceEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhh-hccCc
Q psy6208 86 DDIGGCRKQLAQIKEMVELPLRHPSLFKAI-GVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMS-KLAGE 163 (197)
Q Consensus 86 ~~i~g~~~~~~~l~~~v~~~~~~~~~~~~~-~~~~~~~ill~G~~GtGKT~la~ala~~~~~~~~~v~~~~~~~-~~~~~ 163 (197)
++++|++.+++.+...+..+.........+ ....+.+++|+||||||||++|+++++.++.+++.++|+.+.. .+.+.
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~~~~~~~~~~ 94 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGK 94 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSSCCSGGG
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcchhcccCCccCc
Confidence 458999999999998886533222111111 0134678999999999999999999999999999999988765 34432
Q ss_pred c-HHHHHHHHHHH-----hcCCCeEEEEcccCccCccc
Q psy6208 164 S-ESNLRKAFEEA-----DKNSPSIIFIDELDAIAPKR 195 (197)
Q Consensus 164 ~-~~~~~~~~~~a-----~~~~~~vl~lDeid~l~~~r 195 (197)
. ...+..++..+ ....+++|||||+|.+.++.
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~ 132 (310)
T 1ofh_A 95 EVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKG 132 (310)
T ss_dssp STTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCS
T ss_pred cHHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCccc
Confidence 2 23455554422 01136799999999998764
No 42
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.49 E-value=1.3e-14 Score=125.16 Aligned_cols=120 Identities=23% Similarity=0.292 Sum_probs=81.4
Q ss_pred HHhhcCCCCcccccCcHHHHHHHHHHHHhcccC-hhhHhhhCC---CCCCceEEECCCCCcHHHHHHHHHHHhCCeEEEE
Q psy6208 76 EEEASNAVGYDDIGGCRKQLAQIKEMVELPLRH-PSLFKAIGV---KPPRGILLYGPPGTGKTLIARAVANETGAFFFLI 151 (197)
Q Consensus 76 ~~~~~~~~~~~~i~g~~~~~~~l~~~v~~~~~~-~~~~~~~~~---~~~~~ill~G~~GtGKT~la~ala~~~~~~~~~v 151 (197)
+.+...+.+|++++|++..++++.+++...... +..+...|. ....++||+||||||||++|+++|++++.+++++
T Consensus 29 W~ekyrP~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~~~~i~i 108 (516)
T 1sxj_A 29 WTVKYAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQ 108 (516)
T ss_dssp HHHHTCCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTCEEEEE
T ss_pred cccccCCCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcCCCEEEE
Confidence 445567789999999999999999998753211 111222222 2457899999999999999999999999999999
Q ss_pred echhhhhhccCccH-------HHHHHHHHHH-----hcCCCeEEEEcccCccCccc
Q psy6208 152 NGPEIMSKLAGESE-------SNLRKAFEEA-----DKNSPSIIFIDELDAIAPKR 195 (197)
Q Consensus 152 ~~~~~~~~~~~~~~-------~~~~~~~~~a-----~~~~~~vl~lDeid~l~~~r 195 (197)
+|++.......... ..+...|..+ ....+.||||||+|.+....
T Consensus 109 n~s~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~ 164 (516)
T 1sxj_A 109 NASDVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGD 164 (516)
T ss_dssp CTTSCCCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTS
T ss_pred eCCCcchHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchhh
Confidence 99876432110000 0011122222 22467899999999998754
No 43
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.49 E-value=1.3e-13 Score=114.09 Aligned_cols=108 Identities=26% Similarity=0.351 Sum_probs=71.5
Q ss_pred cccCcHHHHHHHHHHHHhcccChhhHh-----------------hhCCCCCCceEEECCCCCcHHHHHHHHHHHhCCeEE
Q psy6208 87 DIGGCRKQLAQIKEMVELPLRHPSLFK-----------------AIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFF 149 (197)
Q Consensus 87 ~i~g~~~~~~~l~~~v~~~~~~~~~~~-----------------~~~~~~~~~ill~G~~GtGKT~la~ala~~~~~~~~ 149 (197)
.++|++.+++.+...+........... .-......+++|+||||||||++|+++|+.++.+++
T Consensus 22 ~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~~ 101 (376)
T 1um8_A 22 YVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLDIPIA 101 (376)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEE
T ss_pred HccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 589999999999988753322211100 011235678999999999999999999999999999
Q ss_pred EEechhhh-hhccCcc-HHHHHHHHHHHh----cCCCeEEEEcccCccCcc
Q psy6208 150 LINGPEIM-SKLAGES-ESNLRKAFEEAD----KNSPSIIFIDELDAIAPK 194 (197)
Q Consensus 150 ~v~~~~~~-~~~~~~~-~~~~~~~~~~a~----~~~~~vl~lDeid~l~~~ 194 (197)
.++|..+. ..+.+.. +..+..++..+. ...+++|||||+|.+.++
T Consensus 102 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~ 152 (376)
T 1um8_A 102 ISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRL 152 (376)
T ss_dssp EEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC---
T ss_pred EecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHhhh
Confidence 99998765 2343332 334455554322 224689999999999876
No 44
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.48 E-value=2.7e-13 Score=114.83 Aligned_cols=98 Identities=24% Similarity=0.375 Sum_probs=73.4
Q ss_pred hhcCCCCcccccCcHHHH---HHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHhCCeEEEEech
Q psy6208 78 EASNAVGYDDIGGCRKQL---AQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGP 154 (197)
Q Consensus 78 ~~~~~~~~~~i~g~~~~~---~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~~~~~~~v~~~ 154 (197)
+...+.+|++++|++..+ ..+...+.. ....+++|+||||||||++|+++++.++.+++.+++.
T Consensus 18 ~r~rP~~l~~ivGq~~~~~~~~~L~~~i~~-------------~~~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~a~ 84 (447)
T 3pvs_A 18 ARMRPENLAQYIGQQHLLAAGKPLPRAIEA-------------GHLHSMILWGPPGTGKTTLAEVIARYANADVERISAV 84 (447)
T ss_dssp HHTCCCSTTTCCSCHHHHSTTSHHHHHHHH-------------TCCCEEEEECSTTSSHHHHHHHHHHHTTCEEEEEETT
T ss_pred HHhCCCCHHHhCCcHHHHhchHHHHHHHHc-------------CCCcEEEEECCCCCcHHHHHHHHHHHhCCCeEEEEec
Confidence 345567899999999999 677777764 2336899999999999999999999999999999875
Q ss_pred hhhhhccCccHHHHHHHHHHHh----cCCCeEEEEcccCccCccc
Q psy6208 155 EIMSKLAGESESNLRKAFEEAD----KNSPSIIFIDELDAIAPKR 195 (197)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~a~----~~~~~vl~lDeid~l~~~r 195 (197)
.. ....++..+..+. ...+.+|||||+|.|..+.
T Consensus 85 ~~-------~~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~~~ 122 (447)
T 3pvs_A 85 TS-------GVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQ 122 (447)
T ss_dssp TC-------CHHHHHHHHHHHHHHHHTTCCEEEEEETTTCC----
T ss_pred cC-------CHHHHHHHHHHHHHhhhcCCCcEEEEeChhhhCHHH
Confidence 43 2334455554443 3568899999999998754
No 45
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.47 E-value=8.3e-14 Score=112.61 Aligned_cols=100 Identities=26% Similarity=0.473 Sum_probs=75.4
Q ss_pred cCCCCcccccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhhh
Q psy6208 80 SNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSK 159 (197)
Q Consensus 80 ~~~~~~~~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~~~~~~~v~~~~~~~~ 159 (197)
..+.+|++++|.+..++.+.+.+...... ...+.+++|+||||||||++|+++++.++.+++.++|+.+.
T Consensus 6 ~~p~~~~~~ig~~~~~~~l~~~l~~~~~~--------~~~~~~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~-- 75 (324)
T 1hqc_A 6 LRPKTLDEYIGQERLKQKLRVYLEAAKAR--------KEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIE-- 75 (324)
T ss_dssp CCCCSTTTCCSCHHHHHHHHHHHHHHHHH--------CSCCCCCEEECCTTCCCHHHHHHHHHHHTCCEEEECTTTCC--
T ss_pred cCcccHHHhhCHHHHHHHHHHHHHHHHcc--------CCCCCcEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccC--
Confidence 44668999999999999998887643110 13457899999999999999999999999999999987652
Q ss_pred ccCccHHHHHHHHHHHhcCCCeEEEEcccCccCcc
Q psy6208 160 LAGESESNLRKAFEEADKNSPSIIFIDELDAIAPK 194 (197)
Q Consensus 160 ~~~~~~~~~~~~~~~a~~~~~~vl~lDeid~l~~~ 194 (197)
....+...+..+ ...+++|||||+|.+.+.
T Consensus 76 ----~~~~l~~~l~~~-~~~~~~l~lDEi~~l~~~ 105 (324)
T 1hqc_A 76 ----KPGDLAAILANS-LEEGDILFIDEIHRLSRQ 105 (324)
T ss_dssp ----SHHHHHHHHTTT-CCTTCEEEETTTTSCCHH
T ss_pred ----ChHHHHHHHHHh-ccCCCEEEEECCcccccc
Confidence 223333333331 135789999999998754
No 46
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.47 E-value=2.5e-13 Score=110.07 Aligned_cols=99 Identities=24% Similarity=0.279 Sum_probs=76.6
Q ss_pred hHHhhcCCCCcccccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHhCCeEEEEech
Q psy6208 75 EEEEASNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGP 154 (197)
Q Consensus 75 ~~~~~~~~~~~~~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~~~~~~~v~~~ 154 (197)
...+...+.+|++++|++..++.+.+++... ..+..+|++||||||||++++++++.++.++++++++
T Consensus 15 ~~~~k~rP~~~~~ivg~~~~~~~l~~~l~~~------------~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~~~ 82 (324)
T 3u61_B 15 ILEQKYRPSTIDECILPAFDKETFKSITSKG------------KIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVNGS 82 (324)
T ss_dssp SHHHHSCCCSTTTSCCCHHHHHHHHHHHHTT------------CCCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEEETT
T ss_pred hHHHhhCCCCHHHHhCcHHHHHHHHHHHHcC------------CCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEccc
Confidence 3455567789999999999999999988732 3455678889999999999999999999999999986
Q ss_pred hhhhhccCccHHHHHHHHHHHhc-----CCCeEEEEcccCccC
Q psy6208 155 EIMSKLAGESESNLRKAFEEADK-----NSPSIIFIDELDAIA 192 (197)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~a~~-----~~~~vl~lDeid~l~ 192 (197)
... ...++..+..+.. +.+.+|||||+|.+.
T Consensus 83 ~~~-------~~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~ 118 (324)
T 3u61_B 83 DCK-------IDFVRGPLTNFASAASFDGRQKVIVIDEFDRSG 118 (324)
T ss_dssp TCC-------HHHHHTHHHHHHHBCCCSSCEEEEEEESCCCGG
T ss_pred ccC-------HHHHHHHHHHHHhhcccCCCCeEEEEECCcccC
Confidence 642 3344443333222 257899999999997
No 47
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.45 E-value=1.2e-13 Score=113.58 Aligned_cols=71 Identities=30% Similarity=0.370 Sum_probs=54.3
Q ss_pred hcCCCCcccccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHhCC--eEEEEechhh
Q psy6208 79 ASNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGA--FFFLINGPEI 156 (197)
Q Consensus 79 ~~~~~~~~~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~~~--~~~~v~~~~~ 156 (197)
..+..+|++++|++..++.+..+...... +..++.++||+||||||||++|+++++.++. +++.+++..+
T Consensus 37 ~~p~~~~~~ivG~~~~~~~l~~l~~~~~~--------~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~ 108 (368)
T 3uk6_A 37 LEPRQASQGMVGQLAARRAAGVVLEMIRE--------GKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEI 108 (368)
T ss_dssp SCBCSEETTEESCHHHHHHHHHHHHHHHT--------TCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGGG
T ss_pred cCcCcchhhccChHHHHHHHHHHHHHHHc--------CCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchhh
Confidence 34556699999999999887665543211 1234578999999999999999999999964 7888887664
Q ss_pred h
Q psy6208 157 M 157 (197)
Q Consensus 157 ~ 157 (197)
.
T Consensus 109 ~ 109 (368)
T 3uk6_A 109 F 109 (368)
T ss_dssp S
T ss_pred h
Confidence 3
No 48
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.44 E-value=2.2e-13 Score=107.47 Aligned_cols=98 Identities=24% Similarity=0.329 Sum_probs=64.5
Q ss_pred CCcccccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHhC---CeEEEEechhhhhh
Q psy6208 83 VGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANETG---AFFFLINGPEIMSK 159 (197)
Q Consensus 83 ~~~~~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~~---~~~~~v~~~~~~~~ 159 (197)
.+|++++|.+..+..+.+.+... ...+.+++|+||||||||++|+++++.+. .++++++|+.+...
T Consensus 3 ~~f~~~ig~~~~~~~~~~~~~~~-----------~~~~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~~~ 71 (265)
T 2bjv_A 3 EYKDNLLGEANSFLEVLEQVSHL-----------APLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNEN 71 (265)
T ss_dssp -------CCCHHHHHHHHHHHHH-----------TTSCSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSCHH
T ss_pred cccccceeCCHHHHHHHHHHHHH-----------hCCCCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCChh
Confidence 57889999999999998877653 23457899999999999999999999874 68999999876332
Q ss_pred -----ccCccHHHH-------HHHHHHHhcCCCeEEEEcccCccCcc
Q psy6208 160 -----LAGESESNL-------RKAFEEADKNSPSIIFIDELDAIAPK 194 (197)
Q Consensus 160 -----~~~~~~~~~-------~~~~~~a~~~~~~vl~lDeid~l~~~ 194 (197)
+.|...... ...++.+ ..++|||||+|.+.+.
T Consensus 72 ~~~~~l~g~~~~~~~g~~~~~~~~l~~a---~~~~l~lDEi~~l~~~ 115 (265)
T 2bjv_A 72 LLDSELFGHEAGAFTGAQKRHPGRFERA---DGGTLFLDELATAPMM 115 (265)
T ss_dssp HHHHHHHCCC---------CCCCHHHHT---TTSEEEEESGGGSCHH
T ss_pred HHHHHhcCCcccccccccccccchhhhc---CCcEEEEechHhcCHH
Confidence 112111100 1122222 3569999999998764
No 49
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.43 E-value=6.2e-13 Score=120.79 Aligned_cols=102 Identities=24% Similarity=0.397 Sum_probs=74.4
Q ss_pred CCCCcccccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHh----------CCeEEE
Q psy6208 81 NAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANET----------GAFFFL 150 (197)
Q Consensus 81 ~~~~~~~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~----------~~~~~~ 150 (197)
.+..+++++|.+..++++.+.+.. ....+++|+||||||||++++++|+.+ +.++++
T Consensus 165 r~~~ld~viGr~~~i~~l~~~l~~-------------~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~ 231 (854)
T 1qvr_A 165 AEGKLDPVIGRDEEIRRVIQILLR-------------RTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVS 231 (854)
T ss_dssp HTTCSCCCCSCHHHHHHHHHHHHC-------------SSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEE
T ss_pred hcCCCcccCCcHHHHHHHHHHHhc-------------CCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEE
Confidence 456889999999999998887753 345689999999999999999999987 789999
Q ss_pred Eechhhh--hhccCccHHHHHHHHHHHhcC-CCeEEEEcccCccCccc
Q psy6208 151 INGPEIM--SKLAGESESNLRKAFEEADKN-SPSIIFIDELDAIAPKR 195 (197)
Q Consensus 151 v~~~~~~--~~~~~~~~~~~~~~~~~a~~~-~~~vl~lDeid~l~~~r 195 (197)
+++..+. ..+.+..+..+..++..+... .++||||||+|.+.+.+
T Consensus 232 l~~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~ 279 (854)
T 1qvr_A 232 LQMGSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAG 279 (854)
T ss_dssp ECC-----------CHHHHHHHHHHHHHTTCSSEEEEECCC-------
T ss_pred eehHHhhccCccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccC
Confidence 9998886 456677788888898888764 68999999999998543
No 50
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.41 E-value=1.2e-12 Score=117.55 Aligned_cols=101 Identities=25% Similarity=0.407 Sum_probs=82.4
Q ss_pred CCCcccccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHh----------CCeEEEE
Q psy6208 82 AVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANET----------GAFFFLI 151 (197)
Q Consensus 82 ~~~~~~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~----------~~~~~~v 151 (197)
.-.+++++|.+..++++.+.+.. ....+++|+||||||||++++++++.+ +..++.+
T Consensus 182 ~~~~d~~iGr~~~i~~l~~~l~~-------------~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~ 248 (758)
T 1r6b_X 182 VGGIDPLIGREKELERAIQVLCR-------------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL 248 (758)
T ss_dssp TTCSCCCCSCHHHHHHHHHHHTS-------------SSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEEC
T ss_pred cCCCCCccCCHHHHHHHHHHHhc-------------cCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEE
Confidence 45789999999999998887753 356789999999999999999999886 6678888
Q ss_pred echhhh--hhccCccHHHHHHHHHHHhcCCCeEEEEcccCccCccc
Q psy6208 152 NGPEIM--SKLAGESESNLRKAFEEADKNSPSIIFIDELDAIAPKR 195 (197)
Q Consensus 152 ~~~~~~--~~~~~~~~~~~~~~~~~a~~~~~~vl~lDeid~l~~~r 195 (197)
++..+. ..+.+..+..+..+++.+....+++|||||+|.+.+++
T Consensus 249 ~~~~l~~~~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~ 294 (758)
T 1r6b_X 249 DIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAG 294 (758)
T ss_dssp CCC---CCCCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSC
T ss_pred cHHHHhccccccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcC
Confidence 877765 35667788889999998887778999999999997653
No 51
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.40 E-value=5.7e-13 Score=107.99 Aligned_cols=96 Identities=13% Similarity=0.115 Sum_probs=73.4
Q ss_pred ccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHh----------CCeEEEEechhhh
Q psy6208 88 IGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANET----------GAFFFLINGPEIM 157 (197)
Q Consensus 88 i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~----------~~~~~~v~~~~~~ 157 (197)
+.+.+++++++..++...+.. ..+.+++|+||||||||++++++++++ ...+++++|..+.
T Consensus 22 L~~Re~E~~~i~~~L~~~i~~---------~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~ 92 (318)
T 3te6_A 22 LKSQVEDFTRIFLPIYDSLMS---------SQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELA 92 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT---------TCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC
T ss_pred cCCHHHHHHHHHHHHHHHhcC---------CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccC
Confidence 788899999998888765432 567889999999999999999999988 3468899986543
Q ss_pred h----------hcc------CccHHHHHHHHHHH--hcCCCeEEEEcccCccC
Q psy6208 158 S----------KLA------GESESNLRKAFEEA--DKNSPSIIFIDELDAIA 192 (197)
Q Consensus 158 ~----------~~~------~~~~~~~~~~~~~a--~~~~~~vl~lDeid~l~ 192 (197)
+ .+. +.....+...|... ....+.|++|||+|.|.
T Consensus 93 t~~~~~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~ 145 (318)
T 3te6_A 93 GMDALYEKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLL 145 (318)
T ss_dssp --HHHHHHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSC
T ss_pred CHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhh
Confidence 2 221 23455677777764 34567899999999997
No 52
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.38 E-value=1.3e-12 Score=107.55 Aligned_cols=109 Identities=24% Similarity=0.267 Sum_probs=77.5
Q ss_pred HhhcCCCCcccccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHh---------CCe
Q psy6208 77 EEASNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANET---------GAF 147 (197)
Q Consensus 77 ~~~~~~~~~~~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~---------~~~ 147 (197)
..+.+.+.++++.|.+..++++..++..... ...+.+++|+||||||||++++++++.+ +..
T Consensus 10 ~~l~~~~~p~~~~gr~~~~~~l~~~l~~~~~---------~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~ 80 (387)
T 2v1u_A 10 WVLLPDYVPDVLPHREAELRRLAEVLAPALR---------GEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVK 80 (387)
T ss_dssp HHHSTTCCCSCCTTCHHHHHHHHHTTGGGTS---------SCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEE
T ss_pred HhcCCccCCCCCCCHHHHHHHHHHHHHHHHc---------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeE
Confidence 3445667779999999999999988754322 1456789999999999999999999988 788
Q ss_pred EEEEechhhhhh----------------ccCccHHH-HHHHHHHHh-cCCCeEEEEcccCccCcc
Q psy6208 148 FFLINGPEIMSK----------------LAGESESN-LRKAFEEAD-KNSPSIIFIDELDAIAPK 194 (197)
Q Consensus 148 ~~~v~~~~~~~~----------------~~~~~~~~-~~~~~~~a~-~~~~~vl~lDeid~l~~~ 194 (197)
+++++|....+. ..+..... +..++.... .+.+.+|+|||+|.+...
T Consensus 81 ~~~i~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~ 145 (387)
T 2v1u_A 81 PIYVNARHRETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKR 145 (387)
T ss_dssp EEEEETTTSCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHS
T ss_pred EEEEECCcCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhccc
Confidence 999998653211 01222222 334444433 234789999999998754
No 53
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.38 E-value=5.1e-13 Score=115.76 Aligned_cols=103 Identities=24% Similarity=0.370 Sum_probs=70.3
Q ss_pred cccccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhh------
Q psy6208 85 YDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMS------ 158 (197)
Q Consensus 85 ~~~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~~~~~~~v~~~~~~~------ 158 (197)
.++++|+++++..+.+.+........ .++..++|+||||||||++++++|..++.++..+++..+..
T Consensus 80 ~~di~G~~~vk~~i~~~~~l~~~~~~-------~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~~~g 152 (543)
T 3m6a_A 80 DEEHHGLEKVKERILEYLAVQKLTKS-------LKGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIRG 152 (543)
T ss_dssp HHHCSSCHHHHHHHHHHHHHHHHSSS-------CCSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC---------
T ss_pred HHHhccHHHHHHHHHHHHHHHHhccc-------CCCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhhhhh
Confidence 45689999999999877654321111 14567999999999999999999999999999998876533
Q ss_pred ---hccCccHHHHHHHHHHHhcCCCeEEEEcccCccCccc
Q psy6208 159 ---KLAGESESNLRKAFEEADKNSPSIIFIDELDAIAPKR 195 (197)
Q Consensus 159 ---~~~~~~~~~~~~~~~~a~~~~~~vl~lDeid~l~~~r 195 (197)
.+.+.....+...|..+....| ++||||+|.+.+++
T Consensus 153 ~~~~~ig~~~~~~~~~~~~a~~~~~-vl~lDEid~l~~~~ 191 (543)
T 3m6a_A 153 HRRTYVGAMPGRIIQGMKKAGKLNP-VFLLDEIDKMSSDF 191 (543)
T ss_dssp -----------CHHHHHHTTCSSSE-EEEEEESSSCC---
T ss_pred HHHHHhccCchHHHHHHHHhhccCC-EEEEhhhhhhhhhh
Confidence 3444445555666776655544 99999999998874
No 54
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.37 E-value=5.5e-12 Score=95.58 Aligned_cols=98 Identities=30% Similarity=0.401 Sum_probs=70.3
Q ss_pred hhcCCCCcccccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHh-----CCeEEEEe
Q psy6208 78 EASNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANET-----GAFFFLIN 152 (197)
Q Consensus 78 ~~~~~~~~~~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~-----~~~~~~v~ 152 (197)
+...+..|++++|.+..++.+.+++... ...+++|+||+|+|||++++++++.+ ...++.++
T Consensus 9 ~~~~p~~~~~~~g~~~~~~~l~~~l~~~-------------~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~ 75 (226)
T 2chg_A 9 EKYRPRTLDEVVGQDEVIQRLKGYVERK-------------NIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMN 75 (226)
T ss_dssp HHTSCSSGGGCCSCHHHHHHHHHHHHTT-------------CCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEE
T ss_pred HhcCCCCHHHHcCcHHHHHHHHHHHhCC-------------CCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEec
Confidence 3455678999999999999999988642 23459999999999999999999876 34577777
Q ss_pred chhhhhhccCccHHHHHHHHHHHh------cCCCeEEEEcccCccCcc
Q psy6208 153 GPEIMSKLAGESESNLRKAFEEAD------KNSPSIIFIDELDAIAPK 194 (197)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~a~------~~~~~vl~lDeid~l~~~ 194 (197)
+..... ...+...+.... ...+.+|+|||+|.+.+.
T Consensus 76 ~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~ 117 (226)
T 2chg_A 76 ASDERG------IDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTAD 117 (226)
T ss_dssp TTCTTC------HHHHHHHHHHHHTSCCSTTCSCEEEEEETGGGSCHH
T ss_pred cccccC------hHHHHHHHHHHhcccCCCccCceEEEEeChhhcCHH
Confidence 754321 122222222221 246889999999998653
No 55
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.35 E-value=7.5e-13 Score=111.55 Aligned_cols=102 Identities=25% Similarity=0.314 Sum_probs=77.8
Q ss_pred ccccCcHHHHHHHHHHHHhcccChhhHhhhCC-CCCCceEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhh-hccCc
Q psy6208 86 DDIGGCRKQLAQIKEMVELPLRHPSLFKAIGV-KPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMS-KLAGE 163 (197)
Q Consensus 86 ~~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~-~~~~~ill~G~~GtGKT~la~ala~~~~~~~~~v~~~~~~~-~~~~~ 163 (197)
++|+|++.+++.+..++..+..++..+..+.. .++.++||+||||||||++|+++|..++.+++.++++.+.. .|.|.
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~~~~~~~g~vG~ 94 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGK 94 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC----CCC
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCCCceeecchhhcccceeec
Confidence 46899999999999988776554444443332 24678999999999999999999999999999999998887 48885
Q ss_pred -cHHHHHHHHHHHhcCCCeEEEEcccCcc
Q psy6208 164 -SESNLRKAFEEADKNSPSIIFIDELDAI 191 (197)
Q Consensus 164 -~~~~~~~~~~~a~~~~~~vl~lDeid~l 191 (197)
.+..++.+|+.+... +++||++.+
T Consensus 95 d~e~~lr~lf~~a~~~----~~~De~d~~ 119 (444)
T 1g41_A 95 EVDSIIRDLTDSAMKL----VRQQEIAKN 119 (444)
T ss_dssp CTHHHHHHHHHHHHHH----HHHHHHHSC
T ss_pred cHHHHHHHHHHHHHhc----chhhhhhhh
Confidence 788888888877543 345665544
No 56
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=99.34 E-value=1.1e-12 Score=124.82 Aligned_cols=116 Identities=17% Similarity=0.233 Sum_probs=84.4
Q ss_pred cCCCCcccccCcHHHHHHHHHHHHhcccC----------hhhHhh------hC------------CCCCCceEEECCCCC
Q psy6208 80 SNAVGYDDIGGCRKQLAQIKEMVELPLRH----------PSLFKA------IG------------VKPPRGILLYGPPGT 131 (197)
Q Consensus 80 ~~~~~~~~i~g~~~~~~~l~~~v~~~~~~----------~~~~~~------~~------------~~~~~~ill~G~~Gt 131 (197)
.+.++|++++|++..+..+.+.+.+++.. ++.++. .| .+..+.+++||||||
T Consensus 1014 ~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~~glD~~lg~GG~p~g~~~l~~G~~g~ 1093 (1706)
T 3cmw_A 1014 ASGSSTGSMSAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESS 1093 (1706)
T ss_dssp ----------CTTHHHHHHHHHHHHHHHHHHCGGGSEEGGGCGGGSCCEECCSCHHHHHHTSSSSEETTSEEEEECSTTS
T ss_pred cCCceeeecCCccHHHHHHHHHHHHHHhhccCcccchhchhhhhccccccccCchhHHHHhccCCCCCCCEEEEEcCCCC
Confidence 34578999999999999999999988733 334443 11 223344999999999
Q ss_pred cHHHHHHHHHHHh---CCeEEEEechhhh------------hhccCc----cHHHHHHHHHHHhcCCCeEEEEcccCccC
Q psy6208 132 GKTLIARAVANET---GAFFFLINGPEIM------------SKLAGE----SESNLRKAFEEADKNSPSIIFIDELDAIA 192 (197)
Q Consensus 132 GKT~la~ala~~~---~~~~~~v~~~~~~------------~~~~~~----~~~~~~~~~~~a~~~~~~vl~lDeid~l~ 192 (197)
|||+||++++.+. +.+.++++..+.. .++.++ +++.++.+|..++...||++++|+++.|.
T Consensus 1094 GKT~la~~~~~~~~~~g~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~~e~~l~~~~~~ar~~~~~~i~~d~~~al~ 1173 (1706)
T 3cmw_A 1094 GKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALT 1173 (1706)
T ss_dssp SHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCGGGCC
T ss_pred ChHHHHHHHHHHhhhcCCceeEEEcccchHHHHHHHhCCCHHHHhhccccchHHHHHHHHHHHHhcCCeEEEeCchHhcC
Confidence 9999999998766 6778888876644 445555 78899999998999999999999999999
Q ss_pred ccc
Q psy6208 193 PKR 195 (197)
Q Consensus 193 ~~r 195 (197)
|.+
T Consensus 1174 ~~~ 1176 (1706)
T 3cmw_A 1174 PKA 1176 (1706)
T ss_dssp CHH
T ss_pred ccc
Confidence 974
No 57
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.33 E-value=7.9e-13 Score=106.70 Aligned_cols=95 Identities=24% Similarity=0.407 Sum_probs=68.8
Q ss_pred ccccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHh---CCeEEEEechhhhhh---
Q psy6208 86 DDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANET---GAFFFLINGPEIMSK--- 159 (197)
Q Consensus 86 ~~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~---~~~~~~v~~~~~~~~--- 159 (197)
++++|.+..++++.+.+... .....++||+||||||||++|+++++.+ +.+++.++|..+...
T Consensus 2 ~~iig~s~~~~~~~~~~~~~-----------a~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~~~l~~ 70 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMV-----------APSDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALNESLLE 70 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHH-----------CSTTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCCHHHHH
T ss_pred CCcEECCHHHHHHHHHHHHH-----------hCCCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCChHHHH
Confidence 36889999999998888754 2456789999999999999999999976 578999999876432
Q ss_pred --ccCccH-------HHHHHHHHHHhcCCCeEEEEcccCccCcc
Q psy6208 160 --LAGESE-------SNLRKAFEEADKNSPSIIFIDELDAIAPK 194 (197)
Q Consensus 160 --~~~~~~-------~~~~~~~~~a~~~~~~vl~lDeid~l~~~ 194 (197)
++|... ......|+.+. .++||||||+.++..
T Consensus 71 ~~lfg~~~g~~tg~~~~~~g~~~~a~---~g~L~LDEi~~l~~~ 111 (304)
T 1ojl_A 71 SELFGHEKGAFTGADKRREGRFVEAD---GGTLFLDEIGDISPL 111 (304)
T ss_dssp HHHTCCCSSCCC---CCCCCHHHHHT---TSEEEEESCTTCCHH
T ss_pred HHhcCccccccCchhhhhcCHHHhcC---CCEEEEeccccCCHH
Confidence 122110 01123445543 358999999998764
No 58
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.32 E-value=3.3e-12 Score=105.34 Aligned_cols=101 Identities=22% Similarity=0.298 Sum_probs=72.3
Q ss_pred CcccccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHh-----------CCeEEEEe
Q psy6208 84 GYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANET-----------GAFFFLIN 152 (197)
Q Consensus 84 ~~~~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~-----------~~~~~~v~ 152 (197)
..++++|.+..++++.+++...... ..+.+++|+||||+|||++++++++.+ +.++++++
T Consensus 18 ~p~~l~gr~~~~~~l~~~l~~~~~~---------~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~ 88 (384)
T 2qby_B 18 VFKEIPFREDILRDAAIAIRYFVKN---------EVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVN 88 (384)
T ss_dssp HCSSCTTCHHHHHHHHHHHHHHHTT---------CCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEE
T ss_pred CCCCCCChHHHHHHHHHHHHHHHcC---------CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEE
Confidence 3478999999999999888654221 345689999999999999999999987 88999999
Q ss_pred chhhh-h----------hc-------cCcc-HHHHHHHHHHHhcCCCeEEEEcccCccCcc
Q psy6208 153 GPEIM-S----------KL-------AGES-ESNLRKAFEEADKNSPSIIFIDELDAIAPK 194 (197)
Q Consensus 153 ~~~~~-~----------~~-------~~~~-~~~~~~~~~~a~~~~~~vl~lDeid~l~~~ 194 (197)
|.... + .+ .+.. ...+..++...... +.+|+|||+|.+...
T Consensus 89 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~-~~vlilDEi~~l~~~ 148 (384)
T 2qby_B 89 CREVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNI-RAIIYLDEVDTLVKR 148 (384)
T ss_dssp HHHHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSS-CEEEEEETTHHHHHS
T ss_pred CccCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccC-CCEEEEECHHHhccC
Confidence 87643 1 11 1111 22334444444333 349999999998754
No 59
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.32 E-value=3.5e-12 Score=108.63 Aligned_cols=91 Identities=27% Similarity=0.449 Sum_probs=69.4
Q ss_pred cCCCCcccccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHh----------CCeEE
Q psy6208 80 SNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANET----------GAFFF 149 (197)
Q Consensus 80 ~~~~~~~~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~----------~~~~~ 149 (197)
..+-.+++++|.+..++.+.+.+.. ....++||+||||||||++|+++|+.+ +.+++
T Consensus 174 ~r~~~ld~iiGr~~~i~~l~~~l~r-------------~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~ 240 (468)
T 3pxg_A 174 AKEDSLDPVIGRSKEIQRVIEVLSR-------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVM 240 (468)
T ss_dssp TTSSCSCCCCCCHHHHHHHHHHHHC-------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEE
T ss_pred HhcCCCCCccCcHHHHHHHHHHHhc-------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEE
Confidence 3456789999999999999888764 345689999999999999999999996 77888
Q ss_pred EEechhhhhhccCccHHHHHHHHHHHhcCCCeEEEEc
Q psy6208 150 LINGPEIMSKLAGESESNLRKAFEEADKNSPSIIFID 186 (197)
Q Consensus 150 ~v~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~vl~lD 186 (197)
.+++. ..+.|..+..+..+|..+....+.|||||
T Consensus 241 ~l~~~---~~~~g~~e~~~~~~~~~~~~~~~~iLfiD 274 (468)
T 3pxg_A 241 TLDMG---TKYRGEFEDRLKKVMDEIRQAGNIILFID 274 (468)
T ss_dssp CC-------------CTTHHHHHHHHHTCCCCEEEEC
T ss_pred EeeCC---ccccchHHHHHHHHHHHHHhcCCeEEEEe
Confidence 88887 55566666677888888887788999999
No 60
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.31 E-value=8.6e-12 Score=102.41 Aligned_cols=108 Identities=26% Similarity=0.361 Sum_probs=76.3
Q ss_pred hhcCCCCcccccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHh------CCeEEEE
Q psy6208 78 EASNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANET------GAFFFLI 151 (197)
Q Consensus 78 ~~~~~~~~~~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~------~~~~~~v 151 (197)
.+.+.+.+++++|.+..++.+.+++...... ..+..++|+||+|+|||++++++++.+ +..++++
T Consensus 12 ~l~~~~~p~~~~gr~~e~~~l~~~l~~~~~~---------~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i 82 (386)
T 2qby_A 12 YLLPDYIPDELPHREDQIRKIASILAPLYRE---------EKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYI 82 (386)
T ss_dssp GGSSSCCCSCCTTCHHHHHHHHHSSGGGGGT---------CCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEE
T ss_pred hCCCccCCCCCCChHHHHHHHHHHHHHHHcC---------CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEE
Confidence 3455677789999999999998887643221 346689999999999999999999988 8899999
Q ss_pred echhhhh------hc----------cCccHHH-HHHHHHHHhc-CCCeEEEEcccCccCcc
Q psy6208 152 NGPEIMS------KL----------AGESESN-LRKAFEEADK-NSPSIIFIDELDAIAPK 194 (197)
Q Consensus 152 ~~~~~~~------~~----------~~~~~~~-~~~~~~~a~~-~~~~vl~lDeid~l~~~ 194 (197)
+|..... .. .+..... ...+++.... ..|.+|+|||++.+...
T Consensus 83 ~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~ 143 (386)
T 2qby_A 83 NTRQIDTPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKK 143 (386)
T ss_dssp EHHHHCSHHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHS
T ss_pred ECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhcc
Confidence 9864321 10 1111222 3344443333 34899999999998754
No 61
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.30 E-value=5.1e-12 Score=113.42 Aligned_cols=101 Identities=21% Similarity=0.327 Sum_probs=72.5
Q ss_pred ccccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHh---CCeEEEEechhhhhhccC
Q psy6208 86 DDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANET---GAFFFLINGPEIMSKLAG 162 (197)
Q Consensus 86 ~~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~---~~~~~~v~~~~~~~~~~~ 162 (197)
++++|++.+++.+.+.+......... ...+..++||+||||||||++|+++|+.+ +.+++.++|+++...+..
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~----~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~~~~~ 566 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKD----PKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEKHST 566 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSC----TTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCSSCCC
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCC----CCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhccccccc
Confidence 46899999999999888753211000 00122369999999999999999999997 678999999999877654
Q ss_pred ccHHHHHHHHHHHhcCCCeEEEEcccCccCcc
Q psy6208 163 ESESNLRKAFEEADKNSPSIIFIDELDAIAPK 194 (197)
Q Consensus 163 ~~~~~~~~~~~~a~~~~~~vl~lDeid~l~~~ 194 (197)
. .. .+....+...++||||||||.+.+.
T Consensus 567 ~-~~---~l~~~~~~~~~~vl~lDEi~~~~~~ 594 (758)
T 3pxi_A 567 S-GG---QLTEKVRRKPYSVVLLDAIEKAHPD 594 (758)
T ss_dssp C-------CHHHHHHCSSSEEEEECGGGSCHH
T ss_pred c-cc---hhhHHHHhCCCeEEEEeCccccCHH
Confidence 4 11 2223334456789999999988653
No 62
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.29 E-value=1.2e-11 Score=95.26 Aligned_cols=91 Identities=20% Similarity=0.222 Sum_probs=66.0
Q ss_pred CCCCcccccC---cHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHh---CCeEEEEech
Q psy6208 81 NAVGYDDIGG---CRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANET---GAFFFLINGP 154 (197)
Q Consensus 81 ~~~~~~~i~g---~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~---~~~~~~v~~~ 154 (197)
+..+|+++.+ ....++.+..++.. ....+++|+||||||||++++++++.+ +.++.++++.
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~l~~~~~~-------------~~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~ 89 (242)
T 3bos_A 23 DDETFTSYYPAAGNDELIGALKSAASG-------------DGVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLG 89 (242)
T ss_dssp TTCSTTTSCC--CCHHHHHHHHHHHHT-------------CSCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGG
T ss_pred CCCChhhccCCCCCHHHHHHHHHHHhC-------------CCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHH
Confidence 3467888775 34666666666543 246789999999999999999999887 4788999998
Q ss_pred hhhhhccCccHHHHHHHHHHHhcCCCeEEEEcccCccCcc
Q psy6208 155 EIMSKLAGESESNLRKAFEEADKNSPSIIFIDELDAIAPK 194 (197)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~a~~~~~~vl~lDeid~l~~~ 194 (197)
++....... +... ..+.+|+|||++.+..+
T Consensus 90 ~~~~~~~~~--------~~~~--~~~~vliiDe~~~~~~~ 119 (242)
T 3bos_A 90 IHASISTAL--------LEGL--EQFDLICIDDVDAVAGH 119 (242)
T ss_dssp GGGGSCGGG--------GTTG--GGSSEEEEETGGGGTTC
T ss_pred HHHHHHHHH--------HHhc--cCCCEEEEeccccccCC
Confidence 876543211 1111 34789999999998764
No 63
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.27 E-value=1.4e-11 Score=98.96 Aligned_cols=105 Identities=20% Similarity=0.315 Sum_probs=68.2
Q ss_pred ccccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHh---CCeEEEEechhhhhhc--
Q psy6208 86 DDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANET---GAFFFLINGPEIMSKL-- 160 (197)
Q Consensus 86 ~~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~---~~~~~~v~~~~~~~~~-- 160 (197)
++++|++.+++.+...+........ . ...+..+++|+||||||||++|+++|+.+ +.+++.++|+.+....
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~~~---~-~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~~~~~ 92 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAGLK---D-PNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAV 92 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTCS---C-TTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCSTTHH
T ss_pred hhcCCHHHHHHHHHHHHHHHhcCCC---C-CCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccccccccH
Confidence 4688999999999988875311100 0 01233579999999999999999999988 5579999987664321
Q ss_pred ---cCccH-----HHHHHHHHHHhcCCCeEEEEcccCccCcc
Q psy6208 161 ---AGESE-----SNLRKAFEEADKNSPSIIFIDELDAIAPK 194 (197)
Q Consensus 161 ---~~~~~-----~~~~~~~~~a~~~~~~vl~lDeid~l~~~ 194 (197)
.+... .....+.........++|||||+|.+.+.
T Consensus 93 ~~l~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEi~~l~~~ 134 (311)
T 4fcw_A 93 SRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDAIEKAHPD 134 (311)
T ss_dssp HHHHCCCTTSTTTTTCCHHHHHHHHCSSEEEEEETGGGSCHH
T ss_pred HHhcCCCCccccccccchHHHHHHhCCCeEEEEeChhhcCHH
Confidence 11000 00011222233344589999999998754
No 64
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.27 E-value=1.8e-11 Score=98.62 Aligned_cols=104 Identities=28% Similarity=0.313 Sum_probs=70.8
Q ss_pred HHhhcCCCCcccccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHhC-----CeEEE
Q psy6208 76 EEEASNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANETG-----AFFFL 150 (197)
Q Consensus 76 ~~~~~~~~~~~~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~~-----~~~~~ 150 (197)
..+...+.+|++++|++..++.+.+++... ...+++|+||+|+|||++++++++.+. ..++.
T Consensus 15 ~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~-------------~~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~ 81 (327)
T 1iqp_A 15 WVEKYRPQRLDDIVGQEHIVKRLKHYVKTG-------------SMPHLLFAGPPGVGKTTAALALARELFGENWRHNFLE 81 (327)
T ss_dssp HHHHTCCCSTTTCCSCHHHHHHHHHHHHHT-------------CCCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEE
T ss_pred hhhccCCCCHHHhhCCHHHHHHHHHHHHcC-------------CCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEE
Confidence 344566788999999999999999887642 233599999999999999999999863 24777
Q ss_pred EechhhhhhccCccHHHHHHHHHH--HhcCCCeEEEEcccCccCcc
Q psy6208 151 INGPEIMSKLAGESESNLRKAFEE--ADKNSPSIIFIDELDAIAPK 194 (197)
Q Consensus 151 v~~~~~~~~~~~~~~~~~~~~~~~--a~~~~~~vl~lDeid~l~~~ 194 (197)
+++++..... .....+...... .....+.+|+|||+|.+.++
T Consensus 82 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~ 125 (327)
T 1iqp_A 82 LNASDERGIN--VIREKVKEFARTKPIGGASFKIIFLDEADALTQD 125 (327)
T ss_dssp EETTCHHHHH--TTHHHHHHHHHSCCGGGCSCEEEEEETGGGSCHH
T ss_pred eeccccCchH--HHHHHHHHHHhhCCcCCCCCeEEEEeCCCcCCHH
Confidence 7776542210 111112111110 11145789999999998653
No 65
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.26 E-value=1.8e-11 Score=98.37 Aligned_cols=98 Identities=18% Similarity=0.285 Sum_probs=71.7
Q ss_pred HhhcCCCCcccccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHh-----CCeEEEE
Q psy6208 77 EEASNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANET-----GAFFFLI 151 (197)
Q Consensus 77 ~~~~~~~~~~~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~-----~~~~~~v 151 (197)
.+...+..|++++|++..++.+.+++.. ....+++|+||+|+|||++++++++.+ +..++++
T Consensus 12 ~~~~~p~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~ 78 (323)
T 1sxj_B 12 VEKYRPQVLSDIVGNKETIDRLQQIAKD-------------GNMPHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLEL 78 (323)
T ss_dssp HHHTCCSSGGGCCSCTHHHHHHHHHHHS-------------CCCCCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEE
T ss_pred HHhcCCCCHHHHHCCHHHHHHHHHHHHc-------------CCCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEe
Confidence 3445677899999999999999998764 122349999999999999999999986 3457777
Q ss_pred echhhhhhccCccHHHHHHHHHHHh-------cCCCeEEEEcccCccCc
Q psy6208 152 NGPEIMSKLAGESESNLRKAFEEAD-------KNSPSIIFIDELDAIAP 193 (197)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~a~-------~~~~~vl~lDeid~l~~ 193 (197)
++++.. ....++..++... .+.+.+|+|||+|.+..
T Consensus 79 ~~~~~~------~~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~~ 121 (323)
T 1sxj_B 79 NASDDR------GIDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTA 121 (323)
T ss_dssp CTTSCC------SHHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSCH
T ss_pred cCcccc------ChHHHHHHHHHHHhccccCCCCCceEEEEECcccCCH
Confidence 765421 1234444444433 33478999999999865
No 66
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.25 E-value=7.7e-11 Score=97.07 Aligned_cols=105 Identities=25% Similarity=0.237 Sum_probs=71.5
Q ss_pred hcCCCCcccccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCC--ceEEECCCCCcHHHHHHHHHHHh----CCeEEEEe
Q psy6208 79 ASNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPR--GILLYGPPGTGKTLIARAVANET----GAFFFLIN 152 (197)
Q Consensus 79 ~~~~~~~~~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~--~ill~G~~GtGKT~la~ala~~~----~~~~~~v~ 152 (197)
+.+.+.++++.|.+..++++.+++...... ..+. .++|+||+|+|||+++++++..+ +..+++++
T Consensus 10 l~~~~~p~~l~gr~~~~~~l~~~l~~~~~~---------~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~ 80 (389)
T 1fnn_A 10 FSPSYVPKRLPHREQQLQQLDILLGNWLRN---------PGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYIN 80 (389)
T ss_dssp GSTTCCCSCCTTCHHHHHHHHHHHHHHHHS---------TTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEE
T ss_pred cCCccCCCCCCChHHHHHHHHHHHHHHHcC---------CCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEe
Confidence 344566789999999999999988753221 2234 79999999999999999999988 56889999
Q ss_pred chhhhh------h----c------cCccHHHHH-HHHHHHh-cCCCeEEEEcccCccC
Q psy6208 153 GPEIMS------K----L------AGESESNLR-KAFEEAD-KNSPSIIFIDELDAIA 192 (197)
Q Consensus 153 ~~~~~~------~----~------~~~~~~~~~-~~~~~a~-~~~~~vl~lDeid~l~ 192 (197)
|..... . + .+.....+. .+..... ...|.+|+|||+|.+.
T Consensus 81 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~ 138 (389)
T 1fnn_A 81 GFIYRNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLA 138 (389)
T ss_dssp TTTCCSHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSC
T ss_pred CccCCCHHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccc
Confidence 765321 0 0 111122222 2222221 2458899999999883
No 67
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.24 E-value=1.5e-11 Score=110.34 Aligned_cols=91 Identities=27% Similarity=0.442 Sum_probs=70.2
Q ss_pred cCCCCcccccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHh----------CCeEE
Q psy6208 80 SNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANET----------GAFFF 149 (197)
Q Consensus 80 ~~~~~~~~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~----------~~~~~ 149 (197)
...-.+++++|.+..++++.+.+.. ....++||+||||||||++|+++|+.+ +.+++
T Consensus 174 ~~~~~ld~iiG~~~~i~~l~~~l~~-------------~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~ 240 (758)
T 3pxi_A 174 AKEDSLDPVIGRSKEIQRVIEVLSR-------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVM 240 (758)
T ss_dssp TTSSCSCCCCCCHHHHHHHHHHHHC-------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEE
T ss_pred HhhCCCCCccCchHHHHHHHHHHhC-------------CCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEE
Confidence 3456788999999999999888764 345689999999999999999999997 77888
Q ss_pred EEechhhhhhccCccHHHHHHHHHHHhcCCCeEEEEc
Q psy6208 150 LINGPEIMSKLAGESESNLRKAFEEADKNSPSIIFID 186 (197)
Q Consensus 150 ~v~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~vl~lD 186 (197)
.+++ ...+.|+.+..++.+|..+....++|||||
T Consensus 241 ~~~~---g~~~~G~~e~~l~~~~~~~~~~~~~iLfiD 274 (758)
T 3pxi_A 241 TLDM---GTKYRGEFEDRLKKVMDEIRQAGNIILFID 274 (758)
T ss_dssp CC-------------CTTHHHHHHHHHTCCCCEEEEC
T ss_pred Eecc---cccccchHHHHHHHHHHHHHhcCCEEEEEc
Confidence 8877 445667777788899999888889999999
No 68
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.24 E-value=8e-12 Score=101.88 Aligned_cols=100 Identities=23% Similarity=0.308 Sum_probs=69.5
Q ss_pred HHhhcCCCCcccccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHhC------CeEE
Q psy6208 76 EEEASNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANETG------AFFF 149 (197)
Q Consensus 76 ~~~~~~~~~~~~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~~------~~~~ 149 (197)
..+...+.+|++++|++..++.+..++.. ....+++|+||||+|||++++++++.++ ..+.
T Consensus 27 ~~~k~~p~~~~~i~g~~~~~~~l~~~l~~-------------~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~ 93 (353)
T 1sxj_D 27 WVEKYRPKNLDEVTAQDHAVTVLKKTLKS-------------ANLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRIL 93 (353)
T ss_dssp HHHHTCCSSTTTCCSCCTTHHHHHHHTTC-------------TTCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEE
T ss_pred HHHhcCCCCHHHhhCCHHHHHHHHHHHhc-------------CCCCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceE
Confidence 34556778999999999999998887653 2224599999999999999999998863 4577
Q ss_pred EEechhhhhhccCccHHHHHHHHHHH----------------hcCCCeEEEEcccCccCcc
Q psy6208 150 LINGPEIMSKLAGESESNLRKAFEEA----------------DKNSPSIIFIDELDAIAPK 194 (197)
Q Consensus 150 ~v~~~~~~~~~~~~~~~~~~~~~~~a----------------~~~~~~vl~lDeid~l~~~ 194 (197)
.+++++... ...+...+... ....+.+|+|||+|.+.++
T Consensus 94 ~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~~~ 148 (353)
T 1sxj_D 94 ELNASDERG------ISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTAD 148 (353)
T ss_dssp EECSSSCCC------HHHHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCHH
T ss_pred EEccccccc------hHHHHHHHHHHhhhcccccchhhcccCCCCCceEEEEECCCccCHH
Confidence 787765311 11111111111 1134579999999998764
No 69
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.24 E-value=4.3e-11 Score=91.57 Aligned_cols=98 Identities=19% Similarity=0.304 Sum_probs=67.2
Q ss_pred hhcCCCCcccccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHhCCe----------
Q psy6208 78 EASNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAF---------- 147 (197)
Q Consensus 78 ~~~~~~~~~~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~~~~---------- 147 (197)
+...+..+++++|.+..++.+.+.+... ..+..++|+||+|+|||++++++++.+...
T Consensus 15 ~~~~p~~~~~~~g~~~~~~~l~~~l~~~------------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~ 82 (250)
T 1njg_A 15 RKWRPQTFADVVGQEHVLTALANGLSLG------------RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGV 82 (250)
T ss_dssp HHTCCCSGGGCCSCHHHHHHHHHHHHHT------------CCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSC
T ss_pred hccCCccHHHHhCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcc
Confidence 3455678899999999999999888642 334579999999999999999999887431
Q ss_pred --------------EEEEechhhhhhccCccHHHHHHHHHHHh----cCCCeEEEEcccCccCc
Q psy6208 148 --------------FFLINGPEIMSKLAGESESNLRKAFEEAD----KNSPSIIFIDELDAIAP 193 (197)
Q Consensus 148 --------------~~~v~~~~~~~~~~~~~~~~~~~~~~~a~----~~~~~vl~lDeid~l~~ 193 (197)
++.++... ......+..+++... ...+.+|+|||+|.+.+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~ 140 (250)
T 1njg_A 83 CDNCREIEQGRFVDLIEIDAAS------RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSR 140 (250)
T ss_dssp SHHHHHHHTTCCSSEEEEETTC------GGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCH
T ss_pred cHHHHHHhccCCcceEEecCcc------cccHHHHHHHHHHhhhchhcCCceEEEEECcccccH
Confidence 12222111 012233445554432 23578999999999764
No 70
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.24 E-value=5.7e-12 Score=93.73 Aligned_cols=99 Identities=18% Similarity=0.275 Sum_probs=62.3
Q ss_pred CCCCcccccC----cHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHh----CCeEEEEe
Q psy6208 81 NAVGYDDIGG----CRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANET----GAFFFLIN 152 (197)
Q Consensus 81 ~~~~~~~i~g----~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~----~~~~~~v~ 152 (197)
...+|+++.+ +..+++.+.+++... ....+.+++|+||+|+|||+|+++++..+ +..+++++
T Consensus 5 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~ 74 (180)
T 3ec2_A 5 WNANLDTYHPKNVSQNRALLTIRVFVHNF----------NPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFD 74 (180)
T ss_dssp TTCCSSSCCCCSHHHHHHHHHHHHHHHSC----------CGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEE
T ss_pred hhCccccccCCCHHHHHHHHHHHHHHHhc----------cccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEE
Confidence 3567888765 334444444444332 12346789999999999999999999876 66788888
Q ss_pred chhhhhhccCccHHH-HHHHHHHHhcCCCeEEEEcccCcc
Q psy6208 153 GPEIMSKLAGESESN-LRKAFEEADKNSPSIIFIDELDAI 191 (197)
Q Consensus 153 ~~~~~~~~~~~~~~~-~~~~~~~a~~~~~~vl~lDeid~l 191 (197)
+.++...+....... ....++... .|++|+|||++..
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~llilDE~~~~ 112 (180)
T 3ec2_A 75 TKDLIFRLKHLMDEGKDTKFLKTVL--NSPVLVLDDLGSE 112 (180)
T ss_dssp HHHHHHHHHHHHHHTCCSHHHHHHH--TCSEEEEETCSSS
T ss_pred HHHHHHHHHHHhcCchHHHHHHHhc--CCCEEEEeCCCCC
Confidence 877764432111000 001222222 4789999999854
No 71
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.24 E-value=2.1e-11 Score=109.42 Aligned_cols=100 Identities=22% Similarity=0.393 Sum_probs=70.0
Q ss_pred cccCcHHHHHHHHHHHHhcccChhhHhhhCC----CCCCceEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhhh---
Q psy6208 87 DIGGCRKQLAQIKEMVELPLRHPSLFKAIGV----KPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSK--- 159 (197)
Q Consensus 87 ~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~----~~~~~ill~G~~GtGKT~la~ala~~~~~~~~~v~~~~~~~~--- 159 (197)
+++|++.+++.+.+.+.... .|. .+..++||+||||||||++|+++|+.++.+++.++|+++...
T Consensus 459 ~v~g~~~~~~~l~~~i~~~~--------~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~~~~~~i~~s~~~~~~~~ 530 (758)
T 1r6b_X 459 LVFGQDKAIEALTEAIKMAR--------AGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTV 530 (758)
T ss_dssp TSCSCHHHHHHHHHHHHHHH--------TTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGCSSSSCC
T ss_pred hccCHHHHHHHHHHHHHHHh--------cccCCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCEEEEechhhcchhhH
Confidence 47888888888887765421 111 233469999999999999999999999999999999987643
Q ss_pred --ccCcc----H-HHHHHHHHHHhcCCCeEEEEcccCccCcc
Q psy6208 160 --LAGES----E-SNLRKAFEEADKNSPSIIFIDELDAIAPK 194 (197)
Q Consensus 160 --~~~~~----~-~~~~~~~~~a~~~~~~vl~lDeid~l~~~ 194 (197)
++|.. . ..-..+....+...++||||||+|.+.++
T Consensus 531 ~~l~g~~~g~~g~~~~~~l~~~~~~~~~~vl~lDEi~~~~~~ 572 (758)
T 1r6b_X 531 SRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHPD 572 (758)
T ss_dssp SSSCCCCSCSHHHHHTTHHHHHHHHCSSEEEEEETGGGSCHH
T ss_pred hhhcCCCCCCcCccccchHHHHHHhCCCcEEEEeCccccCHH
Confidence 22211 1 01112233444455789999999988653
No 72
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.22 E-value=1.1e-11 Score=99.48 Aligned_cols=101 Identities=28% Similarity=0.375 Sum_probs=69.1
Q ss_pred hcCCCCcccccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHh-----CCeEEEEec
Q psy6208 79 ASNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANET-----GAFFFLING 153 (197)
Q Consensus 79 ~~~~~~~~~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~-----~~~~~~v~~ 153 (197)
...+.+|++++|++..++.+.+++.. ....+++|+||+|+|||++++++++.+ +.+++.+++
T Consensus 10 k~~p~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~ 76 (319)
T 2chq_A 10 KYRPRTLDEVVGQDEVIQRLKGYVER-------------KNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNA 76 (319)
T ss_dssp TTSCSSGGGSCSCHHHHHHHHTTTTT-------------TCCCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEET
T ss_pred hcCCCCHHHHhCCHHHHHHHHHHHhC-------------CCCCeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeC
Confidence 35567899999999999988877653 223349999999999999999999986 335778887
Q ss_pred hhhhhhccCccHHHHHHHHHHH--hcCCCeEEEEcccCccCcc
Q psy6208 154 PEIMSKLAGESESNLRKAFEEA--DKNSPSIIFIDELDAIAPK 194 (197)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~a--~~~~~~vl~lDeid~l~~~ 194 (197)
++..+. ......+....... ....+.+|+|||+|.+...
T Consensus 77 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~ 117 (319)
T 2chq_A 77 SDERGI--DVVRHKIKEFARTAPIGGAPFKIIFLDEADALTAD 117 (319)
T ss_dssp TSTTCT--TTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHH
T ss_pred ccccCh--HHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHH
Confidence 654321 11112222221111 1245789999999998653
No 73
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=99.22 E-value=8e-12 Score=94.46 Aligned_cols=101 Identities=22% Similarity=0.305 Sum_probs=61.9
Q ss_pred CCCcccccCcHH----HHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHh---CCeEEEEech
Q psy6208 82 AVGYDDIGGCRK----QLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANET---GAFFFLINGP 154 (197)
Q Consensus 82 ~~~~~~i~g~~~----~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~---~~~~~~v~~~ 154 (197)
..+|+++.+.+. +++.+.+++..... ...+.+++|+||+|||||++++++++.+ +.++++++++
T Consensus 21 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~ 91 (202)
T 2w58_A 21 RASLSDVDLNDDGRIKAIRFAERFVAEYEP---------GKKMKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVP 91 (202)
T ss_dssp CCCTTSSCCSSHHHHHHHHHHHHHHHHCCS---------SCCCCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHH
T ss_pred cCCHhhccCCChhHHHHHHHHHHHHHHhhh---------ccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhH
Confidence 567888876543 33334444332100 0123789999999999999999999987 6788899998
Q ss_pred hhhhhccCccH-HHHHHHHHHHhcCCCeEEEEcccCccCc
Q psy6208 155 EIMSKLAGESE-SNLRKAFEEADKNSPSIIFIDELDAIAP 193 (197)
Q Consensus 155 ~~~~~~~~~~~-~~~~~~~~~a~~~~~~vl~lDeid~l~~ 193 (197)
++...+..... ......+..... +++|+|||++....
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~lilDei~~~~~ 129 (202)
T 2w58_A 92 ELFRELKHSLQDQTMNEKLDYIKK--VPVLMLDDLGAEAM 129 (202)
T ss_dssp HHHHHHHHC---CCCHHHHHHHHH--SSEEEEEEECCC--
T ss_pred HHHHHHHHHhccchHHHHHHHhcC--CCEEEEcCCCCCcC
Confidence 77654321110 011222333332 46999999977543
No 74
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.18 E-value=4.9e-11 Score=97.90 Aligned_cols=98 Identities=19% Similarity=0.304 Sum_probs=67.8
Q ss_pred hhcCCCCcccccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHhCCe----------
Q psy6208 78 EASNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAF---------- 147 (197)
Q Consensus 78 ~~~~~~~~~~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~~~~---------- 147 (197)
+...+.+|++++|++..++.+.+.+... ..+..++|+||+|+|||++++++++.+++.
T Consensus 8 ~k~rp~~~~~~vg~~~~~~~L~~~l~~~------------~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~ 75 (373)
T 1jr3_A 8 RKWRPQTFADVVGQEHVLTALANGLSLG------------RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGV 75 (373)
T ss_dssp HHTCCCSTTTSCSCHHHHHHHHHHHHHT------------CCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSS
T ss_pred HhhCCCchhhccCcHHHHHHHHHHHHhC------------CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcc
Confidence 3455678999999999999999988642 334578999999999999999999988542
Q ss_pred --------------EEEEechhhhhhccCccHHHHHHHHHHHh----cCCCeEEEEcccCccCc
Q psy6208 148 --------------FFLINGPEIMSKLAGESESNLRKAFEEAD----KNSPSIIFIDELDAIAP 193 (197)
Q Consensus 148 --------------~~~v~~~~~~~~~~~~~~~~~~~~~~~a~----~~~~~vl~lDeid~l~~ 193 (197)
++.++... ......++.+++.+. .+.+.+|+|||+|.+..
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~ 133 (373)
T 1jr3_A 76 CDNCREIEQGRFVDLIEIDAAS------RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSR 133 (373)
T ss_dssp SHHHHHHHTSCCSSCEEEETTC------SCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCH
T ss_pred cHHHHHHhccCCCceEEecccc------cCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcH
Confidence 12222111 011123445555543 23468999999999864
No 75
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.17 E-value=2.8e-11 Score=98.59 Aligned_cols=54 Identities=22% Similarity=0.243 Sum_probs=41.9
Q ss_pred cCCCCcccccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHhCC
Q psy6208 80 SNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGA 146 (197)
Q Consensus 80 ~~~~~~~~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~~~ 146 (197)
.+.++|++++|.+..++.+...... ....++||+||||||||++|+++++.++.
T Consensus 18 ~~~~~f~~i~G~~~~~~~l~~~~~~-------------~~~~~vLl~G~~GtGKT~la~~la~~~~~ 71 (350)
T 1g8p_A 18 RPVFPFSAIVGQEDMKLALLLTAVD-------------PGIGGVLVFGDRGTGKSTAVRALAALLPE 71 (350)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHHHC-------------GGGCCEEEECCGGGCTTHHHHHHHHHSCC
T ss_pred CCCCCchhccChHHHHHHHHHHhhC-------------CCCceEEEECCCCccHHHHHHHHHHhCcc
Confidence 4578999999999977665433321 12346999999999999999999998863
No 76
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.15 E-value=4.2e-11 Score=108.81 Aligned_cols=104 Identities=23% Similarity=0.342 Sum_probs=70.0
Q ss_pred cccccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHh---CCeEEEEechhhhhh--
Q psy6208 85 YDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANET---GAFFFLINGPEIMSK-- 159 (197)
Q Consensus 85 ~~~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~---~~~~~~v~~~~~~~~-- 159 (197)
+++++|++.+++.+...+........ . .-.+..++||+||||||||++|+++|+.+ +.+++.++|+++...
T Consensus 557 ~~~viG~~~a~~~l~~~i~~~~~g~~---~-~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~~~~~~ 632 (854)
T 1qvr_A 557 HKRVVGQDEAIRAVADAIRRARAGLK---D-PNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHA 632 (854)
T ss_dssp HHHSCSCHHHHHHHHHHHHHHGGGCS---C-SSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCCSSGG
T ss_pred hcccCCcHHHHHHHHHHHHHHhcccC---C-CCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhccchhH
Confidence 35789999999999888865311000 0 00123479999999999999999999998 779999999876543
Q ss_pred ---cc-------CccHHHHHHHHHHHhcCCCeEEEEcccCccCcc
Q psy6208 160 ---LA-------GESESNLRKAFEEADKNSPSIIFIDELDAIAPK 194 (197)
Q Consensus 160 ---~~-------~~~~~~~~~~~~~a~~~~~~vl~lDeid~l~~~ 194 (197)
+. |..+ ...+........+++|||||++.+.+.
T Consensus 633 ~s~l~g~~~~~~G~~~--~g~l~~~~~~~~~~vl~lDEi~~l~~~ 675 (854)
T 1qvr_A 633 VSRLIGAPPGYVGYEE--GGQLTEAVRRRPYSVILFDEIEKAHPD 675 (854)
T ss_dssp GGGC----------------CHHHHHHHCSSEEEEESSGGGSCHH
T ss_pred HHHHcCCCCCCcCccc--cchHHHHHHhCCCeEEEEecccccCHH
Confidence 12 2111 112233334455689999999988653
No 77
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.12 E-value=4e-10 Score=91.87 Aligned_cols=96 Identities=22% Similarity=0.377 Sum_probs=67.8
Q ss_pred CCCcccccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhhhcc
Q psy6208 82 AVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLA 161 (197)
Q Consensus 82 ~~~~~~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~~~~~~~v~~~~~~~~~~ 161 (197)
..+++++.|.+..++.+...+..... . -..+..++|+||||+|||||+++++..++.++...+++.+.
T Consensus 21 ~~~l~~~~g~~~~~~~l~~~i~~~~~-------~-~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~---- 88 (334)
T 1in4_A 21 PKSLDEFIGQENVKKKLSLALEAAKM-------R-GEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLV---- 88 (334)
T ss_dssp CSSGGGCCSCHHHHHHHHHHHHHHHH-------H-TCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCC----
T ss_pred CccHHHccCcHHHHHHHHHHHHHHHh-------c-CCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhc----
Confidence 45788899999888888777653210 0 12446799999999999999999999999888777654331
Q ss_pred CccHHHHHHHHHHHhcCCCeEEEEcccCccCc
Q psy6208 162 GESESNLRKAFEEADKNSPSIIFIDELDAIAP 193 (197)
Q Consensus 162 ~~~~~~~~~~~~~a~~~~~~vl~lDeid~l~~ 193 (197)
....+...+... ...+|++|||++.+.+
T Consensus 89 --~~~~l~~~~~~~--~~~~v~~iDE~~~l~~ 116 (334)
T 1in4_A 89 --KQGDMAAILTSL--ERGDVLFIDEIHRLNK 116 (334)
T ss_dssp --SHHHHHHHHHHC--CTTCEEEEETGGGCCH
T ss_pred --CHHHHHHHHHHc--cCCCEEEEcchhhcCH
Confidence 122333333322 2467999999999865
No 78
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.12 E-value=3e-11 Score=98.09 Aligned_cols=92 Identities=22% Similarity=0.252 Sum_probs=62.7
Q ss_pred CcccccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHhCCeEEEEech------hhh
Q psy6208 84 GYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGP------EIM 157 (197)
Q Consensus 84 ~~~~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~~~~~~~v~~~------~~~ 157 (197)
.++++.|++..++.+...+.. +.+++|+||||||||++|+++++.++.++..+++. ++.
T Consensus 25 ~~~~i~g~~~~~~~l~~~l~~---------------~~~vll~G~pGtGKT~la~~la~~~~~~~~~i~~~~~~~~~~l~ 89 (331)
T 2r44_A 25 VGKVVVGQKYMINRLLIGICT---------------GGHILLEGVPGLAKTLSVNTLAKTMDLDFHRIQFTPDLLPSDLI 89 (331)
T ss_dssp HTTTCCSCHHHHHHHHHHHHH---------------TCCEEEESCCCHHHHHHHHHHHHHTTCCEEEEECCTTCCHHHHH
T ss_pred hccceeCcHHHHHHHHHHHHc---------------CCeEEEECCCCCcHHHHHHHHHHHhCCCeEEEecCCCCChhhcC
Confidence 456899999998888776643 35899999999999999999999999999988873 122
Q ss_pred hhccCccHHHHHHHHHHHhcC--CCeEEEEcccCccCcc
Q psy6208 158 SKLAGESESNLRKAFEEADKN--SPSIIFIDELDAIAPK 194 (197)
Q Consensus 158 ~~~~~~~~~~~~~~~~~a~~~--~~~vl~lDeid~l~~~ 194 (197)
+....... ...+. ...+ ..++|||||++.+.++
T Consensus 90 g~~~~~~~---~~~~~-~~~g~l~~~vl~iDEi~~~~~~ 124 (331)
T 2r44_A 90 GTMIYNQH---KGNFE-VKKGPVFSNFILADEVNRSPAK 124 (331)
T ss_dssp EEEEEETT---TTEEE-EEECTTCSSEEEEETGGGSCHH
T ss_pred CceeecCC---CCceE-eccCcccccEEEEEccccCCHH
Confidence 11110000 00000 0011 1269999999998764
No 79
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=99.11 E-value=9.5e-11 Score=94.67 Aligned_cols=100 Identities=20% Similarity=0.369 Sum_probs=60.7
Q ss_pred CCCcccccCcH----HHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHh----CCeEEEEec
Q psy6208 82 AVGYDDIGGCR----KQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANET----GAFFFLING 153 (197)
Q Consensus 82 ~~~~~~i~g~~----~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~----~~~~~~v~~ 153 (197)
..+|+++.+.. .+...+.+++... .-....+++|+||||||||+||.++++.+ +.+++++++
T Consensus 120 ~~tfd~f~~~~~~~~~~~~~~~~~i~~~----------~~~~~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~ 189 (308)
T 2qgz_A 120 HIHLSDIDVNNASRMEAFSAILDFVEQY----------PSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHF 189 (308)
T ss_dssp SCCGGGSCCCSHHHHHHHHHHHHHHHHC----------SCSSCCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEH
T ss_pred hCCHhhCcCCChHHHHHHHHHHHHHHhc----------cccCCceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEH
Confidence 46888876533 2333334444321 11125789999999999999999999865 478899999
Q ss_pred hhhhhhccCcc-HHHHHHHHHHHhcCCCeEEEEcccCccCc
Q psy6208 154 PEIMSKLAGES-ESNLRKAFEEADKNSPSIIFIDELDAIAP 193 (197)
Q Consensus 154 ~~~~~~~~~~~-~~~~~~~~~~a~~~~~~vl~lDeid~l~~ 193 (197)
+++...+.... .......+.... .+++|||||++....
T Consensus 190 ~~l~~~l~~~~~~~~~~~~~~~~~--~~~lLiiDdig~~~~ 228 (308)
T 2qgz_A 190 PSFAIDVKNAISNGSVKEEIDAVK--NVPVLILDDIGAEQA 228 (308)
T ss_dssp HHHHHHHHCCCC----CCTTHHHH--TSSEEEEETCCC---
T ss_pred HHHHHHHHHHhccchHHHHHHHhc--CCCEEEEcCCCCCCC
Confidence 88766543321 111122222222 357999999976543
No 80
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.11 E-value=5.5e-10 Score=91.07 Aligned_cols=99 Identities=24% Similarity=0.367 Sum_probs=68.8
Q ss_pred HHhhcCCCCcccccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHhCC-----eEEE
Q psy6208 76 EEEASNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGA-----FFFL 150 (197)
Q Consensus 76 ~~~~~~~~~~~~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~~~-----~~~~ 150 (197)
..+...+.+|+++.|++.+++.+...+.. ....+++|+||||+|||++++++++.+.. .+..
T Consensus 15 ~~~k~rp~~~~~~~g~~~~~~~L~~~i~~-------------g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~ 81 (340)
T 1sxj_C 15 WVEKYRPETLDEVYGQNEVITTVRKFVDE-------------GKLPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLE 81 (340)
T ss_dssp HHHHTCCSSGGGCCSCHHHHHHHHHHHHT-------------TCCCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEE
T ss_pred hHHHhCCCcHHHhcCcHHHHHHHHHHHhc-------------CCCceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEE
Confidence 34456778999999999999999888764 12234999999999999999999998632 3566
Q ss_pred EechhhhhhccCccHHHHHHHHHHHh------cCCCeEEEEcccCccCc
Q psy6208 151 INGPEIMSKLAGESESNLRKAFEEAD------KNSPSIIFIDELDAIAP 193 (197)
Q Consensus 151 v~~~~~~~~~~~~~~~~~~~~~~~a~------~~~~~vl~lDeid~l~~ 193 (197)
+++++.. ....++..+.... ...+.+++|||+|.+..
T Consensus 82 ~~~~~~~------~~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~~ 124 (340)
T 1sxj_C 82 LNASDDR------GIDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTN 124 (340)
T ss_dssp ECTTSCC------SHHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSCH
T ss_pred EcCcccc------cHHHHHHHHHHHHhhcccCCCCceEEEEeCCCCCCH
Confidence 6654321 1223333332221 12368999999998864
No 81
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.05 E-value=1.1e-10 Score=100.07 Aligned_cols=93 Identities=20% Similarity=0.281 Sum_probs=58.6
Q ss_pred ccccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHhC--CeEEEEech-----hhhh
Q psy6208 86 DDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANETG--AFFFLINGP-----EIMS 158 (197)
Q Consensus 86 ~~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~~--~~~~~v~~~-----~~~~ 158 (197)
..+.|.+..++.+...+.. ..++||+||||||||++|+++|+.++ .++..+++. ++.+
T Consensus 22 ~~ivGq~~~i~~l~~al~~---------------~~~VLL~GpPGtGKT~LAraLa~~l~~~~~f~~~~~~~~t~~dL~G 86 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALS---------------GESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFG 86 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHH---------------TCEEEEECCSSSSHHHHHHHGGGGBSSCCEEEEECCTTCCHHHHHC
T ss_pred hhhHHHHHHHHHHHHHHhc---------------CCeeEeecCchHHHHHHHHHHHHHHhhhhHHHHHHHhcCCHHHhcC
Confidence 3578999888877666532 45899999999999999999999884 456666553 2222
Q ss_pred hccCccHHHHHHHHHHHhcC---CCeEEEEcccCccCcc
Q psy6208 159 KLAGESESNLRKAFEEADKN---SPSIIFIDELDAIAPK 194 (197)
Q Consensus 159 ~~~~~~~~~~~~~~~~a~~~---~~~vl~lDeid~l~~~ 194 (197)
.+.+... .-...|..+..+ .++|||||||+.+.++
T Consensus 87 ~~~~~~~-~~~g~~~~~~~g~l~~~~IL~IDEI~r~~~~ 124 (500)
T 3nbx_X 87 PLSIQAL-KDEGRYERLTSGYLPEAEIVFLDEIWKAGPA 124 (500)
T ss_dssp CBC-----------CBCCTTSGGGCSEEEEESGGGCCHH
T ss_pred cccHHHH-hhchhHHhhhccCCCcceeeeHHhHhhhcHH
Confidence 2211111 012223322222 4679999999987754
No 82
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.02 E-value=2.7e-10 Score=92.98 Aligned_cols=54 Identities=20% Similarity=0.321 Sum_probs=43.1
Q ss_pred hhcCCCCcccccCcHHHHHHHHHHH-HhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHh
Q psy6208 78 EASNAVGYDDIGGCRKQLAQIKEMV-ELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANET 144 (197)
Q Consensus 78 ~~~~~~~~~~i~g~~~~~~~l~~~v-~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~ 144 (197)
+...+.+|++++|++..++.+.+++ .. ....+++|+||+|+|||+++++++..+
T Consensus 6 ~kyrP~~~~~~vg~~~~~~~l~~~~~~~-------------~~~~~~ll~Gp~G~GKTtl~~~la~~l 60 (354)
T 1sxj_E 6 DKYRPKSLNALSHNEELTNFLKSLSDQP-------------RDLPHLLLYGPNGTGKKTRCMALLESI 60 (354)
T ss_dssp TTTCCCSGGGCCSCHHHHHHHHTTTTCT-------------TCCCCEEEECSTTSSHHHHHHTHHHHH
T ss_pred hccCCCCHHHhcCCHHHHHHHHHHHhhC-------------CCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 3456778999999999998887776 32 122339999999999999999999964
No 83
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.01 E-value=3.5e-10 Score=81.92 Aligned_cols=61 Identities=15% Similarity=0.264 Sum_probs=47.9
Q ss_pred CCCceEEECCCCCcHHHHHHHHHHHh---CCeEEEEechhhhhhccCccHHHHHHHHHHHhcCCCeEEEEcccCccCcc
Q psy6208 119 PPRGILLYGPPGTGKTLIARAVANET---GAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPSIIFIDELDAIAPK 194 (197)
Q Consensus 119 ~~~~ill~G~~GtGKT~la~ala~~~---~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~vl~lDeid~l~~~ 194 (197)
....++|+||+|+|||+|+++++... +..+++++..++... +....+++|+|||++.+...
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~---------------~~~~~~~lLilDE~~~~~~~ 98 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLT---------------DAAFEAEYLAVDQVEKLGNE 98 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCC---------------GGGGGCSEEEEESTTCCCSH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHH---------------HHHhCCCEEEEeCccccChH
Confidence 35679999999999999999999887 677888888766433 11224789999999987653
No 84
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=98.91 E-value=3.8e-09 Score=87.61 Aligned_cols=108 Identities=14% Similarity=0.173 Sum_probs=69.3
Q ss_pred hcCCCCcccccCcHHHHHHHHHHH-HhcccChhhHhhhCCCCCCceEE--ECCCCCcHHHHHHHHHHHh---------CC
Q psy6208 79 ASNAVGYDDIGGCRKQLAQIKEMV-ELPLRHPSLFKAIGVKPPRGILL--YGPPGTGKTLIARAVANET---------GA 146 (197)
Q Consensus 79 ~~~~~~~~~i~g~~~~~~~l~~~v-~~~~~~~~~~~~~~~~~~~~ill--~G~~GtGKT~la~ala~~~---------~~ 146 (197)
+.+.+..++++|.+..++++.+.+ ....... ...+..++| +||+|+|||++++++++.. +.
T Consensus 15 ~~~~~~p~~l~gR~~el~~l~~~l~~~~~~~~-------~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~ 87 (412)
T 1w5s_A 15 FDENYIPPELRVRRGEAEALARIYLNRLLSGA-------GLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTV 87 (412)
T ss_dssp GSTTCCCSSCSSSCHHHHHHHHHHHHHHHTSS-------CBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCE
T ss_pred cCCccCCCCCCChHHHHHHHHHHHhHHHhcCC-------CCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCce
Confidence 344556688999999999999887 5421110 023457899 9999999999999998876 45
Q ss_pred eEEEEechhh------hhhc----------cCccHHH-HHHHHHHH-hcCCCeEEEEcccCccCc
Q psy6208 147 FFFLINGPEI------MSKL----------AGESESN-LRKAFEEA-DKNSPSIIFIDELDAIAP 193 (197)
Q Consensus 147 ~~~~v~~~~~------~~~~----------~~~~~~~-~~~~~~~a-~~~~~~vl~lDeid~l~~ 193 (197)
.+++++|... ...+ .+..... ...+.+.. ....+.+|+|||+|.+..
T Consensus 88 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~ 152 (412)
T 1w5s_A 88 KQAYVNAFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLS 152 (412)
T ss_dssp EEEEEEGGGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhh
Confidence 7888887432 1110 0111112 22222222 124588999999999864
No 85
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=98.81 E-value=3.4e-09 Score=88.08 Aligned_cols=96 Identities=23% Similarity=0.306 Sum_probs=68.5
Q ss_pred cccccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHhC---CeEEEEechhhhhh--
Q psy6208 85 YDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANETG---AFFFLINGPEIMSK-- 159 (197)
Q Consensus 85 ~~~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~~---~~~~~v~~~~~~~~-- 159 (197)
++.+.|.+..++++.+.+... .....+++|+|++||||+++|++++.... .+|+.++|..+...
T Consensus 136 ~~~~ig~s~~m~~l~~~i~~~-----------a~~~~~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~~~~~ 204 (387)
T 1ny5_A 136 EEEYVFESPKMKEILEKIKKI-----------SCAECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIF 204 (387)
T ss_dssp CCCCCCCSHHHHHHHHHHHHH-----------TTCCSCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCHHHH
T ss_pred chhhhhccHHhhHHHHHHHHh-----------cCCCCCeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCCCHHHH
Confidence 456788888888887777653 24566799999999999999999998873 68999999876432
Q ss_pred ---ccCccH-------HHHHHHHHHHhcCCCeEEEEcccCccCcc
Q psy6208 160 ---LAGESE-------SNLRKAFEEADKNSPSIIFIDELDAIAPK 194 (197)
Q Consensus 160 ---~~~~~~-------~~~~~~~~~a~~~~~~vl~lDeid~l~~~ 194 (197)
++|... ....+.|+.+.. .+||||||+.|++.
T Consensus 205 ~~elfg~~~g~~tga~~~~~g~~~~a~~---gtlfldei~~l~~~ 246 (387)
T 1ny5_A 205 EAELFGYEKGAFTGAVSSKEGFFELADG---GTLFLDEIGELSLE 246 (387)
T ss_dssp HHHHHCBCTTSSTTCCSCBCCHHHHTTT---SEEEEESGGGCCHH
T ss_pred HHHhcCCCCCCCCCcccccCCceeeCCC---cEEEEcChhhCCHH
Confidence 122111 012244555544 48999999999864
No 86
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=98.80 E-value=2.9e-09 Score=86.09 Aligned_cols=75 Identities=16% Similarity=0.147 Sum_probs=49.6
Q ss_pred CCCCceEEECCCCCcHHHHHHHHHHHhCCeEEEEec--hhhhhhccCccHHHHHHHHHHHhcCCCeEEEEcccCccCcc
Q psy6208 118 KPPRGILLYGPPGTGKTLIARAVANETGAFFFLING--PEIMSKLAGESESNLRKAFEEADKNSPSIIFIDELDAIAPK 194 (197)
Q Consensus 118 ~~~~~ill~G~~GtGKT~la~ala~~~~~~~~~v~~--~~~~~~~~~~~~~~~~~~~~~a~~~~~~vl~lDeid~l~~~ 194 (197)
.....++|+||||+|||+|+.+++...+.++.+++. .+..+.+....+..+..+.+...+.. +|+||+++.+...
T Consensus 121 ~~gsviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~~~eE~v~~~~~~le~~l~~i~~~l~~~~--LLVIDsI~aL~~~ 197 (331)
T 2vhj_A 121 YASGMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQHR--VIVIDSLKNVIGA 197 (331)
T ss_dssp EESEEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHHCS--EEEEECCTTTC--
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEecchhhhhhhhcCHHHHHHHHHHHHhhCC--EEEEecccccccc
Confidence 445568999999999999999999876555455554 33333333334444555555555543 9999999998654
No 87
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=98.77 E-value=2.4e-08 Score=80.45 Aligned_cols=87 Identities=11% Similarity=0.178 Sum_probs=59.0
Q ss_pred CcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHh------CCeEEEEechhhhhhccCc
Q psy6208 90 GCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANET------GAFFFLINGPEIMSKLAGE 163 (197)
Q Consensus 90 g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~------~~~~~~v~~~~~~~~~~~~ 163 (197)
|++++++.+.+.+... ..+.+||+||+|+|||++++++++.. ...+..++++.- ..
T Consensus 1 g~~~~~~~L~~~i~~~-------------~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~-----~~ 62 (305)
T 2gno_A 1 GAKDQLETLKRIIEKS-------------EGISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGE-----NI 62 (305)
T ss_dssp ---CHHHHHHHHHHTC-------------SSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSS-----CB
T ss_pred ChHHHHHHHHHHHHCC-------------CCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcC-----CC
Confidence 5667777888877642 24579999999999999999999863 235666664310 12
Q ss_pred cHHHHHHHHHHHhcC----CCeEEEEcccCccCcc
Q psy6208 164 SESNLRKAFEEADKN----SPSIIFIDELDAIAPK 194 (197)
Q Consensus 164 ~~~~~~~~~~~a~~~----~~~vl~lDeid~l~~~ 194 (197)
.-..++.+.+.+... ...|+||||+|.|...
T Consensus 63 ~id~ir~li~~~~~~p~~~~~kvviIdead~lt~~ 97 (305)
T 2gno_A 63 GIDDIRTIKDFLNYSPELYTRKYVIVHDCERMTQQ 97 (305)
T ss_dssp CHHHHHHHHHHHTSCCSSSSSEEEEETTGGGBCHH
T ss_pred CHHHHHHHHHHHhhccccCCceEEEeccHHHhCHH
Confidence 334566777766532 3579999999998653
No 88
>3qwz_A Transitional endoplasmic reticulum ATPase; UBX, P97 binding, transport protein; HET: MLY; 2.00A {Homo sapiens} PDB: 2pjh_B
Probab=98.75 E-value=1.5e-08 Score=77.19 Aligned_cols=81 Identities=80% Similarity=1.442 Sum_probs=63.8
Q ss_pred hhhHHHHhHHHhhhcCcccccCCEEEEecCcceEEEEEEEecCCCeEEEcCceEEEEcCCCCcchhHHhhcCCCCccccc
Q psy6208 10 SNLFEVYLKPYFLEAYRPVHKDDLFIVRGGMRAVEFKIVDTDPAPYCIVAADTVIHCEGDPIKREEEEEASNAVGYDDIG 89 (197)
Q Consensus 10 ~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 89 (197)
.+.+..|++++|.+.++++..|+.+.+...++.++|+|+.++|.+.+++.+.|.+.+.++|..++..+...+.++|+|||
T Consensus 131 ~~~~~~~lk~~l~~~~rPV~~GD~i~v~~~~~~v~f~Vv~t~P~g~viV~~~T~I~~~~~pv~~~~~e~~~~~VtYeDIG 210 (211)
T 3qwz_A 131 GNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFXVVETDPSPYCIVAPDTVIHCEGEPIKREDEEESLNEVGYDDIG 210 (211)
T ss_dssp SCHHHHTTHHHHTTCCEEEETTCEEECCCTTSCCEEEEEEEESSSEEEECTTCEEECCSCCBCCCGGGSCCC--------
T ss_pred chhHHHHHHHHHhhCCceeecCCEEEEccCCcEEEEEEEeecCCCCEEECCCcEEEEcCcccccccccccCCCcceeCCC
Confidence 34688999999998899999999999998889999999999999999999999999999988765544456789999998
Q ss_pred C
Q psy6208 90 G 90 (197)
Q Consensus 90 g 90 (197)
|
T Consensus 211 G 211 (211)
T 3qwz_A 211 G 211 (211)
T ss_dssp -
T ss_pred C
Confidence 7
No 89
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.70 E-value=8.9e-08 Score=77.90 Aligned_cols=88 Identities=9% Similarity=0.208 Sum_probs=56.7
Q ss_pred cHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHhCCe-----------------------
Q psy6208 91 CRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAF----------------------- 147 (197)
Q Consensus 91 ~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~~~~----------------------- 147 (197)
++..++.+.+.+..- ..++.+||+||+|+|||++|+++++.+.+.
T Consensus 7 ~~~~~~~l~~~i~~~------------~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~ 74 (334)
T 1a5t_A 7 LRPDFEKLVASYQAG------------RGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHP 74 (334)
T ss_dssp GHHHHHHHHHHHHTT------------CCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCT
T ss_pred hHHHHHHHHHHHHcC------------CcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCC
Confidence 355666666666531 345679999999999999999999987542
Q ss_pred -EEEEechhhhhhccCccHHHHHHHHHHHhc----CCCeEEEEcccCccCc
Q psy6208 148 -FFLINGPEIMSKLAGESESNLRKAFEEADK----NSPSIIFIDELDAIAP 193 (197)
Q Consensus 148 -~~~v~~~~~~~~~~~~~~~~~~~~~~~a~~----~~~~vl~lDeid~l~~ 193 (197)
+..++..+- -.......++.+.+.+.. +.+.|++|||+|.|..
T Consensus 75 d~~~~~~~~~---~~~~~i~~ir~l~~~~~~~~~~~~~kvviIdead~l~~ 122 (334)
T 1a5t_A 75 DYYTLAPEKG---KNTLGVDAVREVTEKLNEHARLGGAKVVWVTDAALLTD 122 (334)
T ss_dssp TEEEECCCTT---CSSBCHHHHHHHHHHTTSCCTTSSCEEEEESCGGGBCH
T ss_pred CEEEEecccc---CCCCCHHHHHHHHHHHhhccccCCcEEEEECchhhcCH
Confidence 222222100 001123456666666543 3468999999999875
No 90
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.70 E-value=1.3e-07 Score=76.29 Aligned_cols=56 Identities=29% Similarity=0.253 Sum_probs=45.8
Q ss_pred CCcccccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHhCCeEEEEechh
Q psy6208 83 VGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPE 155 (197)
Q Consensus 83 ~~~~~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~~~~~~~v~~~~ 155 (197)
...+.+.|.+..++++.+.+.. ...++|+||+|+|||+|++.+++..+ ++++++..
T Consensus 9 ~~~~~~~gR~~el~~L~~~l~~---------------~~~v~i~G~~G~GKT~Ll~~~~~~~~--~~~~~~~~ 64 (350)
T 2qen_A 9 TRREDIFDREEESRKLEESLEN---------------YPLTLLLGIRRVGKSSLLRAFLNERP--GILIDCRE 64 (350)
T ss_dssp CSGGGSCSCHHHHHHHHHHHHH---------------CSEEEEECCTTSSHHHHHHHHHHHSS--EEEEEHHH
T ss_pred CChHhcCChHHHHHHHHHHHhc---------------CCeEEEECCCcCCHHHHHHHHHHHcC--cEEEEeec
Confidence 3446789999999999888753 15799999999999999999998875 67777654
No 91
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=98.69 E-value=2e-08 Score=82.96 Aligned_cols=96 Identities=25% Similarity=0.427 Sum_probs=65.8
Q ss_pred ccccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHhCCe--EEEEechhhhhhc---
Q psy6208 86 DDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAF--FFLINGPEIMSKL--- 160 (197)
Q Consensus 86 ~~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~~~~--~~~v~~~~~~~~~--- 160 (197)
..+.|.+..+.++.+.+... ......++++|++||||+.+|++++...+.. ++.++|..+....
T Consensus 129 ~~~ig~s~~~~~~~~~~~~~-----------a~~~~~vli~GesGtGKe~lAr~ih~~s~r~~~fv~vnc~~~~~~~~~~ 197 (368)
T 3dzd_A 129 IEFVGEHPKILEIKRLIPKI-----------AKSKAPVLITGESGTGKEIVARLIHRYSGRKGAFVDLNCASIPQELAES 197 (368)
T ss_dssp CCCCCCSHHHHHHHHHHHHH-----------HTSCSCEEEECCTTSSHHHHHHHHHHHHCCCSCEEEEESSSSCTTTHHH
T ss_pred ccccccchHHHHHHhhhhhh-----------hccchhheEEeCCCchHHHHHHHHHHhccccCCcEEEEcccCChHHHHH
Confidence 35677777777777666543 1345679999999999999999999988543 9999998764322
Q ss_pred --cCccH-------HHHHHHHHHHhcCCCeEEEEcccCccCccc
Q psy6208 161 --AGESE-------SNLRKAFEEADKNSPSIIFIDELDAIAPKR 195 (197)
Q Consensus 161 --~~~~~-------~~~~~~~~~a~~~~~~vl~lDeid~l~~~r 195 (197)
+|... ....+.|+.+.. .+||||||+.|++.-
T Consensus 198 ~lfg~~~g~~tga~~~~~g~~~~a~~---gtlfldei~~l~~~~ 238 (368)
T 3dzd_A 198 ELFGHEKGAFTGALTRKKGKLELADQ---GTLFLDEVGELDQRV 238 (368)
T ss_dssp HHHEECSCSSSSCCCCEECHHHHTTT---SEEEEETGGGSCHHH
T ss_pred HhcCccccccCCcccccCChHhhcCC---CeEEecChhhCCHHH
Confidence 11100 011234565544 479999999998653
No 92
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.64 E-value=2.3e-07 Score=75.07 Aligned_cols=56 Identities=20% Similarity=0.208 Sum_probs=46.0
Q ss_pred CCcccccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHhCCeEEEEechh
Q psy6208 83 VGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPE 155 (197)
Q Consensus 83 ~~~~~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~~~~~~~v~~~~ 155 (197)
...+.+.|.+..++.+.+ +. . ..++|+||+|+|||+|++.+++..+..++++++..
T Consensus 10 ~~~~~~~gR~~el~~L~~-l~--------------~--~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~ 65 (357)
T 2fna_A 10 DNRKDFFDREKEIEKLKG-LR--------------A--PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRK 65 (357)
T ss_dssp CSGGGSCCCHHHHHHHHH-TC--------------S--SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGG
T ss_pred CCHHHhcChHHHHHHHHH-hc--------------C--CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEchh
Confidence 445678999999888877 52 1 47999999999999999999998877778888754
No 93
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.63 E-value=2.4e-08 Score=87.48 Aligned_cols=53 Identities=28% Similarity=0.381 Sum_probs=44.4
Q ss_pred hhcCCCCcccccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHhC
Q psy6208 78 EASNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANETG 145 (197)
Q Consensus 78 ~~~~~~~~~~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~~ 145 (197)
...++..|++++|++.+++.+...+.. ...++|+||||||||+++++++..+.
T Consensus 33 ~~~rp~~l~~i~G~~~~l~~l~~~i~~---------------g~~vll~Gp~GtGKTtlar~ia~~l~ 85 (604)
T 3k1j_A 33 IEVPEKLIDQVIGQEHAVEVIKTAANQ---------------KRHVLLIGEPGTGKSMLGQAMAELLP 85 (604)
T ss_dssp SCCCSSHHHHCCSCHHHHHHHHHHHHT---------------TCCEEEECCTTSSHHHHHHHHHHTSC
T ss_pred ccccccccceEECchhhHhhccccccC---------------CCEEEEEeCCCCCHHHHHHHHhccCC
Confidence 345567889999999999888777652 45899999999999999999999874
No 94
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=98.62 E-value=8.8e-08 Score=92.71 Aligned_cols=85 Identities=26% Similarity=0.393 Sum_probs=62.3
Q ss_pred hhHhhhC---CCCCCceEEECCCCCcHHHHHHHHHHHh---CCeEEEEechhhhhhc----------------cCccHHH
Q psy6208 110 SLFKAIG---VKPPRGILLYGPPGTGKTLIARAVANET---GAFFFLINGPEIMSKL----------------AGESESN 167 (197)
Q Consensus 110 ~~~~~~~---~~~~~~ill~G~~GtGKT~la~ala~~~---~~~~~~v~~~~~~~~~----------------~~~~~~~ 167 (197)
.+-..+| +.++.+++|+||||||||+||.+++.+. +..+.+++..+..... ....+..
T Consensus 1414 ~LD~lLG~GGi~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~a~~~G~dl~~l~v~~~~~~E~~ 1493 (2050)
T 3cmu_A 1414 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQA 1493 (2050)
T ss_dssp HHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHH
T ss_pred HHHHhcCCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHHHHHcCCCchhceeecCChHHHH
Confidence 3344455 7788899999999999999999997765 6678888876432111 1233455
Q ss_pred HHHHHHHHhcCCCeEEEEcccCccCcc
Q psy6208 168 LRKAFEEADKNSPSIIFIDELDAIAPK 194 (197)
Q Consensus 168 ~~~~~~~a~~~~~~vl~lDeid~l~~~ 194 (197)
+..++..++..+|++|+||+++.+.+.
T Consensus 1494 l~~~~~lvr~~~~~lVVIDsi~al~p~ 1520 (2050)
T 3cmu_A 1494 LEICDALARSGAVDVIVVDSVAALTPK 1520 (2050)
T ss_dssp HHHHHHHHHHTCCSEEEESCGGGCCCH
T ss_pred HHHHHHHHhcCCCCEEEEcChhHhccc
Confidence 666666777788999999999988773
No 95
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=98.60 E-value=3.4e-08 Score=74.89 Aligned_cols=33 Identities=15% Similarity=0.269 Sum_probs=27.5
Q ss_pred CCCCCceEEECCCCCcHHHHHHHHHHHhCCeEE
Q psy6208 117 VKPPRGILLYGPPGTGKTLIARAVANETGAFFF 149 (197)
Q Consensus 117 ~~~~~~ill~G~~GtGKT~la~ala~~~~~~~~ 149 (197)
++..++++|+||||||||++|.++++.+...++
T Consensus 55 iPkkn~ili~GPPGtGKTt~a~ala~~l~g~i~ 87 (212)
T 1tue_A 55 TPKKNCLVFCGPANTGKSYFGMSFIHFIQGAVI 87 (212)
T ss_dssp CTTCSEEEEESCGGGCHHHHHHHHHHHHTCEEC
T ss_pred CCcccEEEEECCCCCCHHHHHHHHHHHhCCCee
Confidence 344567999999999999999999999865543
No 96
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=98.59 E-value=2.2e-09 Score=93.94 Aligned_cols=103 Identities=18% Similarity=0.199 Sum_probs=56.1
Q ss_pred cccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHhCCeEEEE----echhhhhhccC
Q psy6208 87 DIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLI----NGPEIMSKLAG 162 (197)
Q Consensus 87 ~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~~~~~~~v----~~~~~~~~~~~ 162 (197)
.+.|++.+++.+...+.... ...... .......++||+||||||||++|+++|+.++...+.. ++..+......
T Consensus 296 ~I~G~e~vk~al~~~l~~g~-~~~~~~-~~~r~~~~vLL~GppGtGKT~LAr~la~~~~r~~~~~~~~~~~~~l~~~~~~ 373 (595)
T 3f9v_A 296 SIYGHWELKEALALALFGGV-PKVLED-TRIRGDIHILIIGDPGTAKSQMLQFISRVAPRAVYTTGKGSTAAGLTAAVVR 373 (595)
T ss_dssp TTSCCHHHHHHHTTTTTCCC-CEETTT-TEECCSCCEEEEESSCCTHHHHHHSSSTTCSCEECCCTTCSTTTTSEEECSS
T ss_pred hhcChHHHHHHHHHHHhCCC-cccccC-CCcCCCcceEEECCCchHHHHHHHHHHHhCCCceecCCCccccccccceeee
Confidence 47788776655533222110 000000 1122334899999999999999999999887655432 22222222111
Q ss_pred ccHH----HHHHHHHHHhcCCCeEEEEcccCccCcc
Q psy6208 163 ESES----NLRKAFEEADKNSPSIIFIDELDAIAPK 194 (197)
Q Consensus 163 ~~~~----~~~~~~~~a~~~~~~vl~lDeid~l~~~ 194 (197)
.... ...+.+..+. .+++||||+|.+.++
T Consensus 374 ~~~~g~~~~~~G~l~~A~---~gil~IDEid~l~~~ 406 (595)
T 3f9v_A 374 EKGTGEYYLEAGALVLAD---GGIAVIDEIDKMRDE 406 (595)
T ss_dssp GGGTSSCSEEECHHHHHS---SSEECCTTTTCCCSH
T ss_pred ccccccccccCCeeEecC---CCcEEeehhhhCCHh
Confidence 0000 0011233332 469999999999875
No 97
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=98.48 E-value=7.2e-08 Score=72.99 Aligned_cols=73 Identities=26% Similarity=0.349 Sum_probs=45.4
Q ss_pred ceEEECCCCCcHHHHHHHHHHH--------hC-CeEEEEechhhhhhcc-------------Cc--cHHHHHHHHHHHhc
Q psy6208 122 GILLYGPPGTGKTLIARAVANE--------TG-AFFFLINGPEIMSKLA-------------GE--SESNLRKAFEEADK 177 (197)
Q Consensus 122 ~ill~G~~GtGKT~la~ala~~--------~~-~~~~~v~~~~~~~~~~-------------~~--~~~~~~~~~~~a~~ 177 (197)
-.+++|+||+|||++|.+++.. .| +++++.++.++..... .+ ....+...+.. ..
T Consensus 7 i~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~-~~ 85 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLKIPHTYIETDAKKLPKSTDEQLSAHDMYEWIKK-PE 85 (199)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTBCSCCEEEECCTTTCSSCCSSCEEGGGHHHHTTS-GG
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCccccccccchhhhhccccCcccccHHHHHHHhhc-cc
Confidence 5789999999999999886543 24 6666677665532221 11 11122222111 23
Q ss_pred CCCeEEEEcccCccCccc
Q psy6208 178 NSPSIIFIDELDAIAPKR 195 (197)
Q Consensus 178 ~~~~vl~lDeid~l~~~r 195 (197)
+..++|+|||++.+.+.+
T Consensus 86 ~~~~vliIDEAq~l~~~~ 103 (199)
T 2r2a_A 86 NIGSIVIVDEAQDVWPAR 103 (199)
T ss_dssp GTTCEEEETTGGGTSBCC
T ss_pred cCceEEEEEChhhhccCc
Confidence 347899999999997654
No 98
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=98.30 E-value=2.6e-06 Score=64.38 Aligned_cols=39 Identities=23% Similarity=0.287 Sum_probs=32.5
Q ss_pred CCCCCceEEECCCCCcHHHHHHHHHHHhCCeEEEEechh
Q psy6208 117 VKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPE 155 (197)
Q Consensus 117 ~~~~~~ill~G~~GtGKT~la~ala~~~~~~~~~v~~~~ 155 (197)
+..+.-++|.||||+|||+++..++...+..+++++...
T Consensus 17 i~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~~ 55 (220)
T 2cvh_A 17 FAPGVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDTEG 55 (220)
T ss_dssp BCTTSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEESSC
T ss_pred CcCCEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEECCC
Confidence 556667899999999999999999886677888887643
No 99
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.29 E-value=1.6e-06 Score=64.37 Aligned_cols=26 Identities=31% Similarity=0.632 Sum_probs=22.6
Q ss_pred ceEEECCCCCcHHHHHHHHHHHhCCe
Q psy6208 122 GILLYGPPGTGKTLIARAVANETGAF 147 (197)
Q Consensus 122 ~ill~G~~GtGKT~la~ala~~~~~~ 147 (197)
.+.|.||+|+|||||++.++..++..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~ 27 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKR 27 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCc
Confidence 47899999999999999999887543
No 100
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=98.26 E-value=2e-06 Score=70.48 Aligned_cols=77 Identities=27% Similarity=0.390 Sum_probs=49.9
Q ss_pred CCCCCceEEECCCCCcHHHHHHHHHHHh---CCeEEEEechhhhhh----ccC------------ccHHHHHHHHHHHhc
Q psy6208 117 VKPPRGILLYGPPGTGKTLIARAVANET---GAFFFLINGPEIMSK----LAG------------ESESNLRKAFEEADK 177 (197)
Q Consensus 117 ~~~~~~ill~G~~GtGKT~la~ala~~~---~~~~~~v~~~~~~~~----~~~------------~~~~~~~~~~~~a~~ 177 (197)
+.....++|+||||+|||+|+..++... +..+++++...-... ..+ ..+..+..+...+..
T Consensus 58 l~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~~~ 137 (349)
T 2zr9_A 58 LPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLVRS 137 (349)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHTT
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHHhc
Confidence 4556668999999999999999997654 667888875432111 011 112222222223335
Q ss_pred CCCeEEEEcccCccCc
Q psy6208 178 NSPSIIFIDELDAIAP 193 (197)
Q Consensus 178 ~~~~vl~lDeid~l~~ 193 (197)
..|++|+||++..+.+
T Consensus 138 ~~~~lIVIDsl~~l~~ 153 (349)
T 2zr9_A 138 GALDIIVIDSVAALVP 153 (349)
T ss_dssp TCCSEEEEECGGGCCC
T ss_pred CCCCEEEEcChHhhcc
Confidence 5699999999999874
No 101
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=98.25 E-value=2.2e-06 Score=70.36 Aligned_cols=77 Identities=22% Similarity=0.331 Sum_probs=50.6
Q ss_pred CCCCCceEEECCCCCcHHHHHHHHHHHh---CCeEEEEechhhhhh-------------c---cCccHHHHHHHHHHHhc
Q psy6208 117 VKPPRGILLYGPPGTGKTLIARAVANET---GAFFFLINGPEIMSK-------------L---AGESESNLRKAFEEADK 177 (197)
Q Consensus 117 ~~~~~~ill~G~~GtGKT~la~ala~~~---~~~~~~v~~~~~~~~-------------~---~~~~~~~~~~~~~~a~~ 177 (197)
+.+..-++|+||||+|||+|+..++... +..+++++....... + ....+..+..+......
T Consensus 58 i~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l~~~ 137 (356)
T 3hr8_A 58 YPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQALEIVDELVRS 137 (356)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHHHHHHHHT
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHHHHHHHHhhh
Confidence 4455668999999999999999998764 667888886542210 0 01122222222222334
Q ss_pred CCCeEEEEcccCccCc
Q psy6208 178 NSPSIIFIDELDAIAP 193 (197)
Q Consensus 178 ~~~~vl~lDeid~l~~ 193 (197)
..+++++||.+..+.+
T Consensus 138 ~~~dlvVIDSi~~l~~ 153 (356)
T 3hr8_A 138 GVVDLIVVDSVAALVP 153 (356)
T ss_dssp SCCSEEEEECTTTCCC
T ss_pred cCCCeEEehHhhhhcC
Confidence 6789999999998876
No 102
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=98.23 E-value=2.8e-06 Score=70.03 Aligned_cols=77 Identities=21% Similarity=0.404 Sum_probs=50.7
Q ss_pred CCCCCceEEECCCCCcHHHHHHHHHHHh---CCeEEEEechhhhhhc----cC-----------ccHHHHHHHHHH-Hhc
Q psy6208 117 VKPPRGILLYGPPGTGKTLIARAVANET---GAFFFLINGPEIMSKL----AG-----------ESESNLRKAFEE-ADK 177 (197)
Q Consensus 117 ~~~~~~ill~G~~GtGKT~la~ala~~~---~~~~~~v~~~~~~~~~----~~-----------~~~~~~~~~~~~-a~~ 177 (197)
+.....++|+|+||+|||+|+..++... +.++++++...-.... .+ .....+....+. ...
T Consensus 71 l~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l~~~ 150 (366)
T 1xp8_A 71 IPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELLVRS 150 (366)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHTT
T ss_pred ccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHHHHHHcCCCHHHceeecCCcHHHHHHHHHHHHhc
Confidence 4556668999999999999999987654 6788888865322111 00 111222223332 334
Q ss_pred CCCeEEEEcccCccCc
Q psy6208 178 NSPSIIFIDELDAIAP 193 (197)
Q Consensus 178 ~~~~vl~lDeid~l~~ 193 (197)
..+++|+||.+..+.+
T Consensus 151 ~~~~lVVIDsl~~l~~ 166 (366)
T 1xp8_A 151 GAIDVVVVDSVAALTP 166 (366)
T ss_dssp TCCSEEEEECTTTCCC
T ss_pred CCCCEEEEeChHHhcc
Confidence 5689999999999975
No 103
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=98.23 E-value=2e-06 Score=65.44 Aligned_cols=37 Identities=27% Similarity=0.348 Sum_probs=28.9
Q ss_pred CCCCCceEEECCCCCcHHHHHHHHHHHh---CCeEEEEec
Q psy6208 117 VKPPRGILLYGPPGTGKTLIARAVANET---GAFFFLING 153 (197)
Q Consensus 117 ~~~~~~ill~G~~GtGKT~la~ala~~~---~~~~~~v~~ 153 (197)
+..+..++|.||+|+|||+|++.++... +..+++++.
T Consensus 20 i~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~ 59 (235)
T 2w0m_A 20 IPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTT 59 (235)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEES
T ss_pred CcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEc
Confidence 4556678999999999999999998654 556666653
No 104
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.23 E-value=2.1e-06 Score=85.52 Aligned_cols=70 Identities=26% Similarity=0.367 Sum_probs=46.8
Q ss_pred CCCceEEECCCCCcHHHHHHHHHH-HhCCeEEEEechhhhhhccCccHHHHHHHHHHHh---------------cCCCeE
Q psy6208 119 PPRGILLYGPPGTGKTLIARAVAN-ETGAFFFLINGPEIMSKLAGESESNLRKAFEEAD---------------KNSPSI 182 (197)
Q Consensus 119 ~~~~ill~G~~GtGKT~la~ala~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~a~---------------~~~~~v 182 (197)
...++||+||||||||++|+.+.. ..+..++.++++...+ ...+...++... .+.+.|
T Consensus 1266 ~~~~vLL~GPpGtGKT~la~~~l~~~~~~~~~~infsa~ts------~~~~~~~i~~~~~~~~~~~g~~~~P~~~gk~~V 1339 (2695)
T 4akg_A 1266 SKRGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDTT------TEHILSALHRHTNYVTTSKGLTLLPKSDIKNLV 1339 (2695)
T ss_dssp HTCEEEEECSTTSSHHHHHHHHHHSCSSCEEEEEECCTTCC------HHHHHHHHHHHBCCEEETTTEEEEEBSSSSCEE
T ss_pred CCCeEEEECCCCCCHHHHHHHHHhcCCCCceEEEEeecCCC------HHHHHHHHHHHhhhccccCCccccCCCCCceEE
Confidence 356899999999999999955544 4467788888765532 233444444321 234579
Q ss_pred EEEcccCccCcc
Q psy6208 183 IFIDELDAIAPK 194 (197)
Q Consensus 183 l~lDeid~l~~~ 194 (197)
|||||++.-..+
T Consensus 1340 lFiDEinmp~~d 1351 (2695)
T 4akg_A 1340 LFCDEINLPKLD 1351 (2695)
T ss_dssp EEEETTTCSCCC
T ss_pred EEeccccccccc
Confidence 999999864443
No 105
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=98.21 E-value=1.7e-06 Score=73.34 Aligned_cols=55 Identities=16% Similarity=0.367 Sum_probs=34.3
Q ss_pred HHhhcCCCCccccc-CcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHh
Q psy6208 76 EEEASNAVGYDDIG-GCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANET 144 (197)
Q Consensus 76 ~~~~~~~~~~~~i~-g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~ 144 (197)
..+...+.+|+++- ++..++..+...+.. ....++|.|++|||||+++.+++..+
T Consensus 14 ~~~~~~p~~~~~Ln~~Q~~av~~~~~~i~~--------------~~~~~li~G~aGTGKT~ll~~~~~~l 69 (459)
T 3upu_A 14 LVPRGSHMTFDDLTEGQKNAFNIVMKAIKE--------------KKHHVTINGPAGTGATTLTKFIIEAL 69 (459)
T ss_dssp -------CCSSCCCHHHHHHHHHHHHHHHS--------------SSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CccccCCCccccCCHHHHHHHHHHHHHHhc--------------CCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence 34445567787764 444455544444432 23389999999999999999998876
No 106
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=98.19 E-value=1.9e-06 Score=63.18 Aligned_cols=35 Identities=23% Similarity=0.279 Sum_probs=30.3
Q ss_pred CceEEECCCCCcHHHHHHHHHHHhCCeEEEEechh
Q psy6208 121 RGILLYGPPGTGKTLIARAVANETGAFFFLINGPE 155 (197)
Q Consensus 121 ~~ill~G~~GtGKT~la~ala~~~~~~~~~v~~~~ 155 (197)
..|+|.|+||+|||+++++++..++.+++.++...
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~D~ 38 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDS 38 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCCeEEeccch
Confidence 46899999999999999999999988887766543
No 107
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=98.18 E-value=4e-06 Score=68.82 Aligned_cols=77 Identities=21% Similarity=0.408 Sum_probs=51.0
Q ss_pred CCCCCceEEECCCCCcHHHHHHHHHHHh---CCeEEEEechhhhhhc----cC-----------ccHHHHHHHHHH-Hhc
Q psy6208 117 VKPPRGILLYGPPGTGKTLIARAVANET---GAFFFLINGPEIMSKL----AG-----------ESESNLRKAFEE-ADK 177 (197)
Q Consensus 117 ~~~~~~ill~G~~GtGKT~la~ala~~~---~~~~~~v~~~~~~~~~----~~-----------~~~~~~~~~~~~-a~~ 177 (197)
+.....++|+|+||+|||+||..++... +.++++++...-.... .+ .....+...++. ...
T Consensus 60 l~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~~~a~~~g~~~~~l~i~~~~~~e~~~~~~~~l~~~ 139 (356)
T 1u94_A 60 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARS 139 (356)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccHHHHHHcCCChhheeeeCCCCHHHHHHHHHHHHhc
Confidence 4566678999999999999999998654 6688888864321110 00 112223333332 234
Q ss_pred CCCeEEEEcccCccCc
Q psy6208 178 NSPSIIFIDELDAIAP 193 (197)
Q Consensus 178 ~~~~vl~lDeid~l~~ 193 (197)
..+++|+||.+..+.+
T Consensus 140 ~~~~lVVIDsl~~l~~ 155 (356)
T 1u94_A 140 GAVDVIVVDSVAALTP 155 (356)
T ss_dssp TCCSEEEEECGGGCCC
T ss_pred cCCCEEEEcCHHHhcc
Confidence 6689999999999875
No 108
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=98.17 E-value=1.5e-06 Score=84.25 Aligned_cols=79 Identities=24% Similarity=0.391 Sum_probs=55.7
Q ss_pred CCCCCCceEEECCCCCcHHHHHHHHHHHh---CCeEEEEechhhhhhcc----------------CccHHHHHHHHHHHh
Q psy6208 116 GVKPPRGILLYGPPGTGKTLIARAVANET---GAFFFLINGPEIMSKLA----------------GESESNLRKAFEEAD 176 (197)
Q Consensus 116 ~~~~~~~ill~G~~GtGKT~la~ala~~~---~~~~~~v~~~~~~~~~~----------------~~~~~~~~~~~~~a~ 176 (197)
++..+..++++||||||||+|+.+++.+. |.++.+++..+....+. ...+....-.....+
T Consensus 1077 gi~~g~~vll~G~~GtGKT~la~~~~~ea~k~Ge~~~Fit~ee~~~~L~a~~~G~dl~~l~~~~pd~~e~~~~i~~~l~~ 1156 (2050)
T 3cmu_A 1077 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 1156 (2050)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHH
T ss_pred CcCCCcEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEccccHHHHHHHHcCCChhHheeecCcchHHHHHHHHHHHH
Confidence 46778889999999999999999997654 78899998876543332 011122222222333
Q ss_pred cCCCeEEEEcccCccCcc
Q psy6208 177 KNSPSIIFIDELDAIAPK 194 (197)
Q Consensus 177 ~~~~~vl~lDeid~l~~~ 194 (197)
...|++|+||++..|.+.
T Consensus 1157 ~~~~dlvVIDsl~~L~~~ 1174 (2050)
T 3cmu_A 1157 SGAVDVIVVDSVAALTPK 1174 (2050)
T ss_dssp HTCCSEEEESCGGGCCCH
T ss_pred hCCCCEEEECCccccccc
Confidence 467999999999999664
No 109
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=98.17 E-value=3.1e-06 Score=65.07 Aligned_cols=72 Identities=18% Similarity=0.156 Sum_probs=43.6
Q ss_pred CceEEECCCCCcHHHHHHHHHHHh---CCeEEEEechh-------hhhhccCcc-H----HHHHHHHHHHhc----CCCe
Q psy6208 121 RGILLYGPPGTGKTLIARAVANET---GAFFFLINGPE-------IMSKLAGES-E----SNLRKAFEEADK----NSPS 181 (197)
Q Consensus 121 ~~ill~G~~GtGKT~la~ala~~~---~~~~~~v~~~~-------~~~~~~~~~-~----~~~~~~~~~a~~----~~~~ 181 (197)
.-++++|++|+|||+++..++... +..++.++... +.+.+ |-. . .....+++.+.. ..++
T Consensus 13 ~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r~~~~i~srl-G~~~~~~~~~~~~~i~~~i~~~~~~~~~d 91 (223)
T 2b8t_A 13 WIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTRSIRNIQSRT-GTSLPSVEVESAPEILNYIMSNSFNDETK 91 (223)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGGGCSSCCCCC-CCSSCCEEESSTHHHHHHHHSTTSCTTCC
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCchHHHHHHHhc-CCCccccccCCHHHHHHHHHHHhhCCCCC
Confidence 347889999999999998887765 55666664221 11111 100 0 011233333332 4589
Q ss_pred EEEEcccCccCc
Q psy6208 182 IIFIDELDAIAP 193 (197)
Q Consensus 182 vl~lDeid~l~~ 193 (197)
+|+|||++.|..
T Consensus 92 vViIDEaQ~l~~ 103 (223)
T 2b8t_A 92 VIGIDEVQFFDD 103 (223)
T ss_dssp EEEECSGGGSCT
T ss_pred EEEEecCccCcH
Confidence 999999998754
No 110
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=98.16 E-value=2e-06 Score=70.58 Aligned_cols=71 Identities=24% Similarity=0.425 Sum_probs=45.8
Q ss_pred CCCceEEECCCCCcHHHHHHHHHHHh----CCeEEEEech-hhhh---------hccCccHHHHHHHHHHHhcCCCeEEE
Q psy6208 119 PPRGILLYGPPGTGKTLIARAVANET----GAFFFLINGP-EIMS---------KLAGESESNLRKAFEEADKNSPSIIF 184 (197)
Q Consensus 119 ~~~~ill~G~~GtGKT~la~ala~~~----~~~~~~v~~~-~~~~---------~~~~~~~~~~~~~~~~a~~~~~~vl~ 184 (197)
+...++|.||+|+||||++++++... +..++.+.-+ ++.. ...+.....+...+..+....|++|+
T Consensus 122 ~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~~~~~~~La~aL~~~Pdvil 201 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKCLVNQREVHRDTLGFSEALRSALREDPDIIL 201 (356)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHTTSCCSEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccccceeeeeeccccCCHHHHHHHHhhhCcCEEe
Confidence 34468999999999999999998765 3444443211 1110 00111112344567788888999999
Q ss_pred EcccC
Q psy6208 185 IDELD 189 (197)
Q Consensus 185 lDeid 189 (197)
+||+-
T Consensus 202 lDEp~ 206 (356)
T 3jvv_A 202 VGEMR 206 (356)
T ss_dssp ESCCC
T ss_pred cCCCC
Confidence 99974
No 111
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.14 E-value=2.6e-06 Score=84.77 Aligned_cols=67 Identities=21% Similarity=0.311 Sum_probs=54.3
Q ss_pred CCceEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhhhccCccHHHHHHHHHHHhcCCCeEEEEcccCccCc
Q psy6208 120 PRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPSIIFIDELDAIAP 193 (197)
Q Consensus 120 ~~~ill~G~~GtGKT~la~ala~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~vl~lDeid~l~~ 193 (197)
..++++.||+|||||.+++++|+.+|.+++.++|++-+. ...+..+|..+... .+++++||++.+.+
T Consensus 645 ~~~~~l~GpaGtGKTe~vk~LA~~lg~~~v~~nc~e~ld------~~~lg~~~~g~~~~-Gaw~~~DE~nr~~~ 711 (2695)
T 4akg_A 645 KYGGCFFGPAGTGKTETVKAFGQNLGRVVVVFNCDDSFD------YQVLSRLLVGITQI-GAWGCFDEFNRLDE 711 (2695)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHTTTCCCEEEETTSSCC------HHHHHHHHHHHHHH-TCEEEEETTTSSCH
T ss_pred CCCCcccCCCCCCcHHHHHHHHHHhCCcEEEEECCCCCC------hhHhhHHHHHHHhc-CCEeeehhhhhcCh
Confidence 457899999999999999999999999999999986543 23456666665543 46899999998765
No 112
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=98.12 E-value=4.1e-06 Score=64.23 Aligned_cols=77 Identities=16% Similarity=0.158 Sum_probs=49.1
Q ss_pred CCCCCceEEECCCCCcHHHHHHHHHHH--h-------CCeEEEEechhh---------hhhc--------------cCcc
Q psy6208 117 VKPPRGILLYGPPGTGKTLIARAVANE--T-------GAFFFLINGPEI---------MSKL--------------AGES 164 (197)
Q Consensus 117 ~~~~~~ill~G~~GtGKT~la~ala~~--~-------~~~~~~v~~~~~---------~~~~--------------~~~~ 164 (197)
+.....++|+||+|+|||+|+..++.. . +..+++++.... ...+ ....
T Consensus 21 i~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 100 (243)
T 1n0w_A 21 IETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAFN 100 (243)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCS
T ss_pred CcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHHHhhCeEEEecCC
Confidence 455667899999999999999999884 2 456788875441 0000 0001
Q ss_pred HHH----HHHHHHHHhcCCCeEEEEcccCccCc
Q psy6208 165 ESN----LRKAFEEADKNSPSIIFIDELDAIAP 193 (197)
Q Consensus 165 ~~~----~~~~~~~a~~~~~~vl~lDeid~l~~ 193 (197)
... +..+.+......|.+|+|||+..+..
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~ 133 (243)
T 1n0w_A 101 TDHQTQLLYQASAMMVESRYALLIVDSATALYR 133 (243)
T ss_dssp HHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC
T ss_pred HHHHHHHHHHHHHHHhcCCceEEEEeCchHHHH
Confidence 111 12233334446799999999988754
No 113
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.07 E-value=2.6e-06 Score=63.90 Aligned_cols=35 Identities=29% Similarity=0.381 Sum_probs=29.7
Q ss_pred CCCCceEEECCCCCcHHHHHHHHHHHhCCeEEEEe
Q psy6208 118 KPPRGILLYGPPGTGKTLIARAVANETGAFFFLIN 152 (197)
Q Consensus 118 ~~~~~ill~G~~GtGKT~la~ala~~~~~~~~~v~ 152 (197)
.+...|+|.|++|+|||+++++++..++.+++..+
T Consensus 23 ~~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~d 57 (199)
T 3vaa_A 23 NAMVRIFLTGYMGAGKTTLGKAFARKLNVPFIDLD 57 (199)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEHH
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcch
Confidence 44567999999999999999999999998876543
No 114
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=98.04 E-value=3e-06 Score=62.52 Aligned_cols=33 Identities=27% Similarity=0.357 Sum_probs=28.9
Q ss_pred CCceEEECCCCCcHHHHHHHHHHHhCCeEEEEe
Q psy6208 120 PRGILLYGPPGTGKTLIARAVANETGAFFFLIN 152 (197)
Q Consensus 120 ~~~ill~G~~GtGKT~la~ala~~~~~~~~~v~ 152 (197)
...|+|.|++|+|||++++.++..++.+++..+
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~d 37 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILYDSD 37 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 457999999999999999999999998876543
No 115
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=98.03 E-value=2.9e-06 Score=63.66 Aligned_cols=69 Identities=23% Similarity=0.202 Sum_probs=42.5
Q ss_pred CceEEECCCCCcHH-HHHHHHHHHh--CCeEEEEech---hhhhhccCccH--------HHHHHHHHHHhcCCCeEEEEc
Q psy6208 121 RGILLYGPPGTGKT-LIARAVANET--GAFFFLINGP---EIMSKLAGESE--------SNLRKAFEEADKNSPSIIFID 186 (197)
Q Consensus 121 ~~ill~G~~GtGKT-~la~ala~~~--~~~~~~v~~~---~~~~~~~~~~~--------~~~~~~~~~a~~~~~~vl~lD 186 (197)
.-.+++||.|+||| +|++++.+.. +..+++++.. ........... ....++++.. + ..++|+||
T Consensus 21 ~l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp~~D~R~~~~i~S~~g~~~~A~~~~~~~d~~~~~-~-~~DvIlID 98 (195)
T 1w4r_A 21 QIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYSSSFCTHDRNTMEALPACLLRDVAQEA-L-GVAVIGID 98 (195)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEETTCCCGGGSCCHHHHHHSEEEEESSGGGGHHHH-H-TCSEEEES
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEccccCccchhhhhhccCCcccceecCCHHHHHHhc-c-CCCEEEEE
Confidence 34789999999999 8999997755 6778777643 11111110000 0011222222 2 36899999
Q ss_pred ccCcc
Q psy6208 187 ELDAI 191 (197)
Q Consensus 187 eid~l 191 (197)
|++.|
T Consensus 99 EaQFf 103 (195)
T 1w4r_A 99 EGQFF 103 (195)
T ss_dssp SGGGC
T ss_pred chhhh
Confidence 99998
No 116
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.02 E-value=1.1e-05 Score=66.74 Aligned_cols=67 Identities=19% Similarity=0.213 Sum_probs=45.5
Q ss_pred hCCCCCCceEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhhhccCccHHHHHHHHHHHhcCCCeEEEEcccCccCc
Q psy6208 115 IGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPSIIFIDELDAIAP 193 (197)
Q Consensus 115 ~~~~~~~~ill~G~~GtGKT~la~ala~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~vl~lDeid~l~~ 193 (197)
+++..+..++|+||+|+|||+++++++...+..++.++.+.- .....+. ...+..++++||++.+..
T Consensus 164 ~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~~~~~~~------~~~~~lg------~~~q~~~~l~dd~~~~~~ 230 (377)
T 1svm_A 164 YNIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPLD------RLNFELG------VAIDQFLVVFEDVKGTGG 230 (377)
T ss_dssp HCCTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEECCSSCTT------THHHHHG------GGTTCSCEEETTCCCSTT
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhhcCCcEEEEeccch------hHHHHHH------HhcchhHHHHHHHHHHHH
Confidence 357778889999999999999999999988776655432211 0000111 112335689999998875
No 117
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=98.02 E-value=1.3e-05 Score=65.41 Aligned_cols=40 Identities=20% Similarity=0.316 Sum_probs=31.9
Q ss_pred CCCCCCceEEECCCCCcHHHHHHHHHHHh---------CCeEEEEechh
Q psy6208 116 GVKPPRGILLYGPPGTGKTLIARAVANET---------GAFFFLINGPE 155 (197)
Q Consensus 116 ~~~~~~~ill~G~~GtGKT~la~ala~~~---------~~~~~~v~~~~ 155 (197)
|+....-++|+||||+|||+++..++... +..+++++...
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~ 166 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTEN 166 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSS
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 35566668999999999999999998862 56788887654
No 118
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=98.00 E-value=6.9e-06 Score=66.45 Aligned_cols=40 Identities=18% Similarity=0.299 Sum_probs=32.5
Q ss_pred CCCCCCceEEECCCCCcHHHHHHHHHHHh---------CCeEEEEechh
Q psy6208 116 GVKPPRGILLYGPPGTGKTLIARAVANET---------GAFFFLINGPE 155 (197)
Q Consensus 116 ~~~~~~~ill~G~~GtGKT~la~ala~~~---------~~~~~~v~~~~ 155 (197)
|+.....++|+|+||+|||+++..++... +..+++++...
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~ 151 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEG 151 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 45566678999999999999999998764 56788888654
No 119
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=98.00 E-value=2.3e-06 Score=63.82 Aligned_cols=32 Identities=16% Similarity=0.094 Sum_probs=23.6
Q ss_pred CceEEECCCCCcHHHHHHHHHHHh---CCeEEEEe
Q psy6208 121 RGILLYGPPGTGKTLIARAVANET---GAFFFLIN 152 (197)
Q Consensus 121 ~~ill~G~~GtGKT~la~ala~~~---~~~~~~v~ 152 (197)
.-++++||+|+|||+++..++... +.+++.+.
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~~ 38 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYKLGKKKVAVFK 38 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 347899999999999986666543 56665553
No 120
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.99 E-value=5.8e-06 Score=61.21 Aligned_cols=34 Identities=29% Similarity=0.415 Sum_probs=29.0
Q ss_pred CCCCceEEECCCCCcHHHHHHHHHHHhCCeEEEE
Q psy6208 118 KPPRGILLYGPPGTGKTLIARAVANETGAFFFLI 151 (197)
Q Consensus 118 ~~~~~ill~G~~GtGKT~la~ala~~~~~~~~~v 151 (197)
..+..|+|.|+||+||||+++.++..++.+++..
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~~ 36 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGLRLPLLSK 36 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHcCCeEecH
Confidence 3456789999999999999999999998876654
No 121
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=97.97 E-value=2.5e-05 Score=63.03 Aligned_cols=76 Identities=17% Similarity=0.284 Sum_probs=48.7
Q ss_pred CCCCCceEEECCCCCcHHHHHHHHHHHh-----CCeEEEEechhhhhh----ccC-----------ccHHHH-HHHHHH-
Q psy6208 117 VKPPRGILLYGPPGTGKTLIARAVANET-----GAFFFLINGPEIMSK----LAG-----------ESESNL-RKAFEE- 174 (197)
Q Consensus 117 ~~~~~~ill~G~~GtGKT~la~ala~~~-----~~~~~~v~~~~~~~~----~~~-----------~~~~~~-~~~~~~- 174 (197)
+.+. -++|+||||+|||+|+..++... +..+++++.++-... ..| .....+ ..+.+.
T Consensus 26 l~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~ra~~lGvd~d~llv~~~~~~E~~~l~i~~~l 104 (333)
T 3io5_A 26 MQSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAYLRSMGVDPERVIHTPVQSLEQLRIDMVNQL 104 (333)
T ss_dssp BCSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHHHHHHTTCCGGGEEEEECSBHHHHHHHHHHHH
T ss_pred CcCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHHHHHHhCCCHHHeEEEcCCCHHHHHHHHHHHH
Confidence 3444 57999999999999988776543 678899987542211 000 111122 222222
Q ss_pred --HhcCCCeEEEEcccCccCc
Q psy6208 175 --ADKNSPSIIFIDELDAIAP 193 (197)
Q Consensus 175 --a~~~~~~vl~lDeid~l~~ 193 (197)
.....|++|+||-|..|.+
T Consensus 105 ~~i~~~~~~lvVIDSI~aL~~ 125 (333)
T 3io5_A 105 DAIERGEKVVVFIDSLGNLAS 125 (333)
T ss_dssp HTCCTTCCEEEEEECSTTCBC
T ss_pred HHhhccCceEEEEeccccccc
Confidence 3456799999999999975
No 122
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.97 E-value=6.1e-06 Score=60.67 Aligned_cols=34 Identities=32% Similarity=0.583 Sum_probs=29.2
Q ss_pred CCCceEEECCCCCcHHHHHHHHHHHhCCeEEEEe
Q psy6208 119 PPRGILLYGPPGTGKTLIARAVANETGAFFFLIN 152 (197)
Q Consensus 119 ~~~~ill~G~~GtGKT~la~ala~~~~~~~~~v~ 152 (197)
....|+|+|+||+|||++++.++..++..++..+
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~d 43 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASKSGLKYINVG 43 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHhCCeEEEHH
Confidence 4557999999999999999999999988776543
No 123
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.97 E-value=9.3e-06 Score=63.81 Aligned_cols=72 Identities=25% Similarity=0.472 Sum_probs=43.2
Q ss_pred CCCCceEEECCCCCcHHHHHHHHHHHh----CCeEEEEech-hh-hh--------hccCccHHHHHHHHHHHhcCCCeEE
Q psy6208 118 KPPRGILLYGPPGTGKTLIARAVANET----GAFFFLINGP-EI-MS--------KLAGESESNLRKAFEEADKNSPSII 183 (197)
Q Consensus 118 ~~~~~ill~G~~GtGKT~la~ala~~~----~~~~~~v~~~-~~-~~--------~~~~~~~~~~~~~~~~a~~~~~~vl 183 (197)
.+...++|.||+|+||||++++++... ...+.....+ +. .. ...+.....++..+..+....|++|
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~~~~~~~v~q~~~gl~~~~l~~~la~aL~~~p~il 102 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALREDPDVI 102 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHHHHCCSEE
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeecCCcceeeeHHHhCCCHHHHHHHHHHHHhhCCCEE
Confidence 455668999999999999999998764 2333332211 00 00 0001011223455566655679999
Q ss_pred EEcccC
Q psy6208 184 FIDELD 189 (197)
Q Consensus 184 ~lDeid 189 (197)
++||.-
T Consensus 103 llDEp~ 108 (261)
T 2eyu_A 103 FVGEMR 108 (261)
T ss_dssp EESCCC
T ss_pred EeCCCC
Confidence 999983
No 124
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.96 E-value=4.9e-05 Score=59.13 Aligned_cols=39 Identities=38% Similarity=0.537 Sum_probs=32.5
Q ss_pred CCCCceEEECCCCCcHHHHHHHHHHHhCCeEEEEechhh
Q psy6208 118 KPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEI 156 (197)
Q Consensus 118 ~~~~~ill~G~~GtGKT~la~ala~~~~~~~~~v~~~~~ 156 (197)
..+..++|.|+||+|||++++.++..++..++.++...+
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~ 68 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSF 68 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGG
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHH
Confidence 345668999999999999999999999866677777655
No 125
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=97.96 E-value=1.8e-05 Score=60.73 Aligned_cols=34 Identities=24% Similarity=0.217 Sum_probs=27.2
Q ss_pred CCceEEECCCCCcHHHHHHHHHHHh---CCeEEEEec
Q psy6208 120 PRGILLYGPPGTGKTLIARAVANET---GAFFFLING 153 (197)
Q Consensus 120 ~~~ill~G~~GtGKT~la~ala~~~---~~~~~~v~~ 153 (197)
...+++.|++|+||||++-.+|..+ |..++.++.
T Consensus 6 ~l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~ 42 (228)
T 2r8r_A 6 RLKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVV 42 (228)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEe
Confidence 3469999999999999999988775 667665554
No 126
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=97.95 E-value=5.1e-05 Score=65.83 Aligned_cols=49 Identities=16% Similarity=0.155 Sum_probs=38.7
Q ss_pred CCcccccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHH
Q psy6208 83 VGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 142 (197)
Q Consensus 83 ~~~~~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~ 142 (197)
.....++|.+..++++.+.+... ....+.+.|+|++|+|||+||..+++
T Consensus 121 ~~~~~~vGR~~~l~~L~~~L~~~-----------~~~~~~v~I~G~~GiGKTtLa~~~~~ 169 (591)
T 1z6t_A 121 QRPVVFVTRKKLVNAIQQKLSKL-----------KGEPGWVTIHGMAGCGKSVLAAEAVR 169 (591)
T ss_dssp CCCSSCCCCHHHHHHHHHHHTTS-----------TTSCEEEEEECCTTSSHHHHHHHHHC
T ss_pred CCCCeecccHHHHHHHHHHHhcc-----------cCCCceEEEEcCCCCCHHHHHHHHHh
Confidence 34567999999999999987532 12345689999999999999999864
No 127
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.94 E-value=6.6e-06 Score=59.67 Aligned_cols=31 Identities=23% Similarity=0.138 Sum_probs=27.5
Q ss_pred ceEEECCCCCcHHHHHHHHHHHhCCeEEEEe
Q psy6208 122 GILLYGPPGTGKTLIARAVANETGAFFFLIN 152 (197)
Q Consensus 122 ~ill~G~~GtGKT~la~ala~~~~~~~~~v~ 152 (197)
.|+|.|++|+||||+++.+++.++.+++..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d 33 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELKYPIIKGS 33 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHCCCEEECC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeeecCc
Confidence 4889999999999999999999998876554
No 128
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=97.93 E-value=4.7e-05 Score=58.76 Aligned_cols=33 Identities=27% Similarity=0.303 Sum_probs=27.2
Q ss_pred CceEEECCCCCcHHHHHHHHHHHhCCeEEEEec
Q psy6208 121 RGILLYGPPGTGKTLIARAVANETGAFFFLING 153 (197)
Q Consensus 121 ~~ill~G~~GtGKT~la~ala~~~~~~~~~v~~ 153 (197)
..++++||+|+|||.++.+++...+.+++.+..
T Consensus 109 ~~~ll~~~tG~GKT~~a~~~~~~~~~~~liv~P 141 (237)
T 2fz4_A 109 KRGCIVLPTGSGKTHVAMAAINELSTPTLIVVP 141 (237)
T ss_dssp SEEEEEESSSTTHHHHHHHHHHHSCSCEEEEES
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHcCCCEEEEeC
Confidence 359999999999999999998888766666543
No 129
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.93 E-value=2.3e-05 Score=60.07 Aligned_cols=37 Identities=27% Similarity=0.358 Sum_probs=28.9
Q ss_pred CCCCCceEEECCCCCcHHHHHHHHHHHh---CCeEEEEec
Q psy6208 117 VKPPRGILLYGPPGTGKTLIARAVANET---GAFFFLING 153 (197)
Q Consensus 117 ~~~~~~ill~G~~GtGKT~la~ala~~~---~~~~~~v~~ 153 (197)
+..+..++|.||||+|||+++..++... +..+++++.
T Consensus 20 l~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~ 59 (247)
T 2dr3_A 20 IPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVAL 59 (247)
T ss_dssp EETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEc
Confidence 4566678999999999999998886543 567777764
No 130
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=97.92 E-value=3.5e-05 Score=60.25 Aligned_cols=38 Identities=24% Similarity=0.321 Sum_probs=31.2
Q ss_pred CCceEEECCCCCcHHHHHHHHHHH---hCCeEEEEechhhh
Q psy6208 120 PRGILLYGPPGTGKTLIARAVANE---TGAFFFLINGPEIM 157 (197)
Q Consensus 120 ~~~ill~G~~GtGKT~la~ala~~---~~~~~~~v~~~~~~ 157 (197)
+..|+|.|+||+|||++++.++.. .|.+++.++...+.
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~~ 44 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIR 44 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHHH
Confidence 346899999999999999999987 67887767765554
No 131
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.91 E-value=2.5e-05 Score=60.00 Aligned_cols=36 Identities=28% Similarity=0.318 Sum_probs=27.2
Q ss_pred CCCCCceEEECCCCCcHHHHHHHHH--HH--hCCeEEEEe
Q psy6208 117 VKPPRGILLYGPPGTGKTLIARAVA--NE--TGAFFFLIN 152 (197)
Q Consensus 117 ~~~~~~ill~G~~GtGKT~la~ala--~~--~~~~~~~v~ 152 (197)
+.++..+.|.||+|+|||+|++.++ .. .+...++++
T Consensus 27 i~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~ 66 (251)
T 2ehv_A 27 FPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVT 66 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEE
Confidence 4566779999999999999999988 33 244555554
No 132
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.90 E-value=1.1e-05 Score=58.72 Aligned_cols=30 Identities=40% Similarity=0.718 Sum_probs=26.2
Q ss_pred CCceEEECCCCCcHHHHHHHHHHHhCCeEE
Q psy6208 120 PRGILLYGPPGTGKTLIARAVANETGAFFF 149 (197)
Q Consensus 120 ~~~ill~G~~GtGKT~la~ala~~~~~~~~ 149 (197)
+..+.|.|++|+||||+++.++..++..++
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~l~~~~i 33 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFY 33 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHTTCEEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 346999999999999999999999987554
No 133
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=97.89 E-value=1.2e-05 Score=66.39 Aligned_cols=73 Identities=25% Similarity=0.454 Sum_probs=45.0
Q ss_pred CCCCCceEEECCCCCcHHHHHHHHHHHh----CCeEEEEech-hh--------hhh-ccCccHHHHHHHHHHHhcCCCeE
Q psy6208 117 VKPPRGILLYGPPGTGKTLIARAVANET----GAFFFLINGP-EI--------MSK-LAGESESNLRKAFEEADKNSPSI 182 (197)
Q Consensus 117 ~~~~~~ill~G~~GtGKT~la~ala~~~----~~~~~~v~~~-~~--------~~~-~~~~~~~~~~~~~~~a~~~~~~v 182 (197)
+.++..++|.||+|+||||++++++... ...++.+..+ ++ ... ..+.....+...+..+.+..|++
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~~~~~~~v~Q~~~g~~~~~~~~~l~~~L~~~pd~ 212 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALREDPDV 212 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCSHHHHHHHTTSCCSE
T ss_pred hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhhccCceEEEeeecCCCHHHHHHHHHHHhhhCcCE
Confidence 3556678999999999999999998765 2344443321 10 000 00001112344556666678999
Q ss_pred EEEcccC
Q psy6208 183 IFIDELD 189 (197)
Q Consensus 183 l~lDeid 189 (197)
|++||+-
T Consensus 213 illdE~~ 219 (372)
T 2ewv_A 213 IFVGEMR 219 (372)
T ss_dssp EEESCCC
T ss_pred EEECCCC
Confidence 9999984
No 134
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=97.89 E-value=8e-06 Score=60.19 Aligned_cols=31 Identities=32% Similarity=0.519 Sum_probs=27.4
Q ss_pred ceEEECCCCCcHHHHHHHHHHHhCCeEEEEe
Q psy6208 122 GILLYGPPGTGKTLIARAVANETGAFFFLIN 152 (197)
Q Consensus 122 ~ill~G~~GtGKT~la~ala~~~~~~~~~v~ 152 (197)
.|+|.|+||+|||++++.++..++.+++..+
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~~id~D 34 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKALGVGLLDTD 34 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCEEeCc
Confidence 5899999999999999999999998876543
No 135
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.89 E-value=2.4e-05 Score=62.21 Aligned_cols=38 Identities=34% Similarity=0.561 Sum_probs=30.5
Q ss_pred CCCceEEECCCCCcHHHHHHHHHHHhCCeEEEEechhh
Q psy6208 119 PPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEI 156 (197)
Q Consensus 119 ~~~~ill~G~~GtGKT~la~ala~~~~~~~~~v~~~~~ 156 (197)
.+..++|.||||+||||+++.++..++..++.+++..+
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D~~ 69 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTF 69 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEechHh
Confidence 34568999999999999999999988555667776444
No 136
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=97.89 E-value=1.4e-05 Score=62.90 Aligned_cols=27 Identities=44% Similarity=0.612 Sum_probs=23.7
Q ss_pred CCCceEEECCCCCcHHHHHHHHHHHhC
Q psy6208 119 PPRGILLYGPPGTGKTLIARAVANETG 145 (197)
Q Consensus 119 ~~~~ill~G~~GtGKT~la~ala~~~~ 145 (197)
+..+++|+||||||||+++.++|+...
T Consensus 103 ~~n~~~l~GppgtGKt~~a~ala~~~~ 129 (267)
T 1u0j_A 103 KRNTIWLFGPATTGKTNIAEAIAHTVP 129 (267)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHhhhc
Confidence 356799999999999999999999753
No 137
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.89 E-value=8.1e-06 Score=60.43 Aligned_cols=40 Identities=33% Similarity=0.396 Sum_probs=32.6
Q ss_pred CCCCCceEEECCCCCcHHHHHHHHHHHhCCeEEEEechhh
Q psy6208 117 VKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEI 156 (197)
Q Consensus 117 ~~~~~~ill~G~~GtGKT~la~ala~~~~~~~~~v~~~~~ 156 (197)
+..+..+.|.||+|+||||+++.++...+...+.++..++
T Consensus 6 i~~g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~~ 45 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDL 45 (191)
T ss_dssp CCTTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcccch
Confidence 3455678999999999999999999887777777776554
No 138
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.89 E-value=8.4e-06 Score=60.38 Aligned_cols=34 Identities=38% Similarity=0.550 Sum_probs=28.1
Q ss_pred CCCceEEECCCCCcHHHHHHHHHHH-hCCeEEEEe
Q psy6208 119 PPRGILLYGPPGTGKTLIARAVANE-TGAFFFLIN 152 (197)
Q Consensus 119 ~~~~ill~G~~GtGKT~la~ala~~-~~~~~~~v~ 152 (197)
....|+|+|++|+|||++++.++.. ++.+++..+
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~l~g~~~id~d 43 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAELDGFQHLEVG 43 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHHSTTEEEEEHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcCCCEEeeHH
Confidence 3456999999999999999999999 686665543
No 139
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.88 E-value=1.1e-05 Score=59.16 Aligned_cols=30 Identities=33% Similarity=0.522 Sum_probs=26.8
Q ss_pred ceEEECCCCCcHHHHHHHHHHHhCCeEEEE
Q psy6208 122 GILLYGPPGTGKTLIARAVANETGAFFFLI 151 (197)
Q Consensus 122 ~ill~G~~GtGKT~la~ala~~~~~~~~~v 151 (197)
.|+|.|+||+|||+++++++..++.+++..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~~~~d~ 35 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDLVFLDS 35 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEEcc
Confidence 589999999999999999999999876643
No 140
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=97.88 E-value=8.6e-06 Score=59.17 Aligned_cols=33 Identities=18% Similarity=0.219 Sum_probs=28.6
Q ss_pred CCceEEECCCCCcHHHHHHHHHHHhCCeEEEEe
Q psy6208 120 PRGILLYGPPGTGKTLIARAVANETGAFFFLIN 152 (197)
Q Consensus 120 ~~~ill~G~~GtGKT~la~ala~~~~~~~~~v~ 152 (197)
-.+|+|.|++|||||++++.++..++.+++..+
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~lg~~~id~D 39 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLALKLEVLDTD 39 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred cceEEEECCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 457999999999999999999999998876543
No 141
>3tiw_A Transitional endoplasmic reticulum ATPase; beta-barrel alpha-helix, transport protein ATPase ubiquitin ubiquitin, phosphorylation; 1.80A {Homo sapiens} PDB: 3qq8_A 3qq7_A 3qc8_A
Probab=97.86 E-value=4.1e-05 Score=57.07 Aligned_cols=59 Identities=83% Similarity=1.513 Sum_probs=54.1
Q ss_pred hhhHHHHhHHHhhhcCcccccCCEEEEecCcceEEEEEEEecCCCeEEEcCceEEEEcC
Q psy6208 10 SNLFEVYLKPYFLEAYRPVHKDDLFIVRGGMRAVEFKIVDTDPAPYCIVAADTVIHCEG 68 (197)
Q Consensus 10 ~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 68 (197)
.+.+..|+++||.+.++++..|+.+.+...++.++|+|+.++|.+.+++.+.|.+.+.+
T Consensus 128 ~~~~~~~lk~~l~~~~rpV~~GD~i~v~~~~~~v~f~Vv~t~P~~~v~V~~~T~I~~eg 186 (187)
T 3tiw_A 128 GNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDTVIHCEG 186 (187)
T ss_dssp CCHHHHTHHHHHTTTCCEEETTCEEEEECSSSEEEEEEEEEESSSEEECCTTCEEECCC
T ss_pred chhHHHHHHHHhccCCceeeCCCEEEEccCCCEEEEEEEEecCCCCEEECCCcEEEecC
Confidence 34688999999999899999999999998889999999999999999999999998864
No 142
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.85 E-value=8.1e-05 Score=62.66 Aligned_cols=74 Identities=16% Similarity=0.185 Sum_probs=49.8
Q ss_pred CCceEEECCCCCcHHHHHHHHHHHh---CCeEEEEechhhhh----------h-----c----c-CccHHHHHHHHHHHh
Q psy6208 120 PRGILLYGPPGTGKTLIARAVANET---GAFFFLINGPEIMS----------K-----L----A-GESESNLRKAFEEAD 176 (197)
Q Consensus 120 ~~~ill~G~~GtGKT~la~ala~~~---~~~~~~v~~~~~~~----------~-----~----~-~~~~~~~~~~~~~a~ 176 (197)
+..+++.|++|+||||++..+|..+ +..+..+++..... . . . ..........++.+.
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a~ 179 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYFK 179 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHHH
Confidence 5568999999999999999998766 66777776532210 0 0 1 112233455666676
Q ss_pred cCCCeEEEEcccCccCc
Q psy6208 177 KNSPSIIFIDELDAIAP 193 (197)
Q Consensus 177 ~~~~~vl~lDeid~l~~ 193 (197)
...+++++||....+..
T Consensus 180 ~~~~DvVIIDTaGrl~~ 196 (443)
T 3dm5_A 180 SKGVDIIIVDTAGRHKE 196 (443)
T ss_dssp HTTCSEEEEECCCCSSC
T ss_pred hCCCCEEEEECCCcccc
Confidence 66689999998876653
No 143
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.84 E-value=5.8e-05 Score=60.63 Aligned_cols=73 Identities=23% Similarity=0.302 Sum_probs=46.0
Q ss_pred CCCceEEECCCCCcHHHHHHHHHHHh---CCeEEEEechhhhh-------hc------------cC-ccHHHHHHHHHHH
Q psy6208 119 PPRGILLYGPPGTGKTLIARAVANET---GAFFFLINGPEIMS-------KL------------AG-ESESNLRKAFEEA 175 (197)
Q Consensus 119 ~~~~ill~G~~GtGKT~la~ala~~~---~~~~~~v~~~~~~~-------~~------------~~-~~~~~~~~~~~~a 175 (197)
.+..++|.|++|+||||++..+|..+ +..+..+++..... .+ .+ .........+..+
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al~~a 182 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAVAHA 182 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHHH
Confidence 45568899999999999999998765 55666665432110 00 01 1111223344555
Q ss_pred hcCCCeEEEEcccCcc
Q psy6208 176 DKNSPSIIFIDELDAI 191 (197)
Q Consensus 176 ~~~~~~vl~lDeid~l 191 (197)
....+++++||+...+
T Consensus 183 ~~~~~dvvIiDtpg~~ 198 (306)
T 1vma_A 183 LARNKDVVIIDTAGRL 198 (306)
T ss_dssp HHTTCSEEEEEECCCC
T ss_pred HhcCCCEEEEECCCch
Confidence 5567899999998753
No 144
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.84 E-value=1.2e-05 Score=62.74 Aligned_cols=32 Identities=38% Similarity=0.489 Sum_probs=28.5
Q ss_pred ceEEECCCCCcHHHHHHHHHHHhCCeEEEEec
Q psy6208 122 GILLYGPPGTGKTLIARAVANETGAFFFLING 153 (197)
Q Consensus 122 ~ill~G~~GtGKT~la~ala~~~~~~~~~v~~ 153 (197)
.++|.||+|+|||++++++|..++..++..+.
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~~~~i~~D~ 34 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETGWPVVALDR 34 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCCEEECCS
T ss_pred EEEEECCCCcCHHHHHHHHHhcCCCeEEeccH
Confidence 47899999999999999999999988877654
No 145
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=97.83 E-value=4.5e-05 Score=57.26 Aligned_cols=32 Identities=25% Similarity=0.276 Sum_probs=27.4
Q ss_pred CCceEEECCCCCcHHHHHHHHHHHh---CCeEEEE
Q psy6208 120 PRGILLYGPPGTGKTLIARAVANET---GAFFFLI 151 (197)
Q Consensus 120 ~~~ill~G~~GtGKT~la~ala~~~---~~~~~~v 151 (197)
...|++++++|.||||+|-+++.+. |.++..+
T Consensus 28 ~g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~v 62 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVV 62 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 4569999999999999999998765 7787777
No 146
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.81 E-value=1.2e-05 Score=58.13 Aligned_cols=29 Identities=38% Similarity=0.644 Sum_probs=25.5
Q ss_pred ceEEECCCCCcHHHHHHHHHHHhCCeEEEE
Q psy6208 122 GILLYGPPGTGKTLIARAVANETGAFFFLI 151 (197)
Q Consensus 122 ~ill~G~~GtGKT~la~ala~~~~~~~~~v 151 (197)
.|+|.|+||+|||++++.+ ..++.+++.+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~ 31 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KERGAKVIVM 31 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHTTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHH-HHCCCcEEEH
Confidence 4889999999999999999 8888887654
No 147
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.80 E-value=1.6e-05 Score=59.56 Aligned_cols=32 Identities=34% Similarity=0.465 Sum_probs=27.8
Q ss_pred CCceEEECCCCCcHHHHHHHHHHHhCCeEEEE
Q psy6208 120 PRGILLYGPPGTGKTLIARAVANETGAFFFLI 151 (197)
Q Consensus 120 ~~~ill~G~~GtGKT~la~ala~~~~~~~~~v 151 (197)
+..|+|.|+||+|||++++.++..++.+++..
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l~~~~i~~ 51 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKLGIPQIST 51 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCcEEeh
Confidence 34589999999999999999999999876654
No 148
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=97.79 E-value=1.4e-05 Score=58.03 Aligned_cols=30 Identities=30% Similarity=0.435 Sum_probs=26.7
Q ss_pred ceEEECCCCCcHHHHHHHHHHHhCCeEEEE
Q psy6208 122 GILLYGPPGTGKTLIARAVANETGAFFFLI 151 (197)
Q Consensus 122 ~ill~G~~GtGKT~la~ala~~~~~~~~~v 151 (197)
.|+|.|++|+|||++++.++..++.+++..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~~id~ 33 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARALGYEFVDT 33 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCcEEcc
Confidence 589999999999999999999999876543
No 149
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.79 E-value=8e-05 Score=62.58 Aligned_cols=73 Identities=25% Similarity=0.195 Sum_probs=47.3
Q ss_pred CCceEEECCCCCcHHHHHHHHHHHh---CCeEEEEechhhh----------hhc-----c----Cc-cHHHHHHHHHHHh
Q psy6208 120 PRGILLYGPPGTGKTLIARAVANET---GAFFFLINGPEIM----------SKL-----A----GE-SESNLRKAFEEAD 176 (197)
Q Consensus 120 ~~~ill~G~~GtGKT~la~ala~~~---~~~~~~v~~~~~~----------~~~-----~----~~-~~~~~~~~~~~a~ 176 (197)
+..+++.|++|+||||++..+|..+ +..+..+++.... ... . +. ........+..+.
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a~ 176 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIFV 176 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHHH
Confidence 4568899999999999999998766 6677766643110 000 0 01 1112334455555
Q ss_pred cCCCeEEEEcccCccC
Q psy6208 177 KNSPSIIFIDELDAIA 192 (197)
Q Consensus 177 ~~~~~vl~lDeid~l~ 192 (197)
...+++++||....+.
T Consensus 177 ~~~~DvvIIDTaGr~~ 192 (433)
T 3kl4_A 177 KNKMDIIIVDTAGRHG 192 (433)
T ss_dssp TTTCSEEEEEECCCSS
T ss_pred hcCCCEEEEECCCCcc
Confidence 5578999999987754
No 150
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.78 E-value=2.9e-05 Score=58.89 Aligned_cols=38 Identities=21% Similarity=0.293 Sum_probs=28.9
Q ss_pred CCCCCceEEECCCCCcHHHHHHHHHHHh---------CCeEEEEech
Q psy6208 117 VKPPRGILLYGPPGTGKTLIARAVANET---------GAFFFLINGP 154 (197)
Q Consensus 117 ~~~~~~ill~G~~GtGKT~la~ala~~~---------~~~~~~v~~~ 154 (197)
+....-+.|.||+|+|||+|++.++... +...++++..
T Consensus 22 i~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~ 68 (231)
T 4a74_A 22 IETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTE 68 (231)
T ss_dssp EESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESS
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECC
Confidence 4556678999999999999999998743 3346666653
No 151
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.78 E-value=1.6e-05 Score=58.91 Aligned_cols=33 Identities=21% Similarity=0.338 Sum_probs=28.4
Q ss_pred CCCceEEECCCCCcHHHHHHHHHHHhCCeEEEE
Q psy6208 119 PPRGILLYGPPGTGKTLIARAVANETGAFFFLI 151 (197)
Q Consensus 119 ~~~~ill~G~~GtGKT~la~ala~~~~~~~~~v 151 (197)
.+..|+|.|++|+|||++++.+++.++.+++..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~ 40 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKYGYTHLST 40 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCeEEcH
Confidence 345799999999999999999999998876544
No 152
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.78 E-value=1.5e-05 Score=58.90 Aligned_cols=31 Identities=23% Similarity=0.420 Sum_probs=26.9
Q ss_pred CCceEEECCCCCcHHHHHHHHHHHhCCeEEE
Q psy6208 120 PRGILLYGPPGTGKTLIARAVANETGAFFFL 150 (197)
Q Consensus 120 ~~~ill~G~~GtGKT~la~ala~~~~~~~~~ 150 (197)
+..|+|.|+||+|||++++.++..++.+++.
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~~~~~i~ 33 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKYGYTHLS 33 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHCCEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCeEEe
Confidence 3468999999999999999999999877654
No 153
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=97.77 E-value=4.1e-05 Score=59.33 Aligned_cols=34 Identities=21% Similarity=0.346 Sum_probs=28.6
Q ss_pred CCCCceEEECCCCCcHHHHHHHHHHHhCCeEEEE
Q psy6208 118 KPPRGILLYGPPGTGKTLIARAVANETGAFFFLI 151 (197)
Q Consensus 118 ~~~~~ill~G~~GtGKT~la~ala~~~~~~~~~v 151 (197)
..+..|+|.|+||+||||+++.+++.++.+++..
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~ 60 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSHCYCHLST 60 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 3456799999999999999999999998766544
No 154
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.77 E-value=2.2e-05 Score=58.82 Aligned_cols=32 Identities=31% Similarity=0.527 Sum_probs=27.6
Q ss_pred CCceEEECCCCCcHHHHHHHHHHHhCCeEEEE
Q psy6208 120 PRGILLYGPPGTGKTLIARAVANETGAFFFLI 151 (197)
Q Consensus 120 ~~~ill~G~~GtGKT~la~ala~~~~~~~~~v 151 (197)
+..|+|.|++|+||||+++.++..++..++..
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg~~~i~~ 49 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACGYPFIEG 49 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHTCCEEEG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCEEEeC
Confidence 44689999999999999999999998776553
No 155
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.76 E-value=2.6e-05 Score=59.19 Aligned_cols=32 Identities=28% Similarity=0.416 Sum_probs=27.8
Q ss_pred CCceEEECCCCCcHHHHHHHHHHHhCCeEEEE
Q psy6208 120 PRGILLYGPPGTGKTLIARAVANETGAFFFLI 151 (197)
Q Consensus 120 ~~~ill~G~~GtGKT~la~ala~~~~~~~~~v 151 (197)
+..|+|.|+||+||||+++.+++.++.+++..
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 35 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERFHAAHLAT 35 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCceEEeh
Confidence 45689999999999999999999999776554
No 156
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=97.75 E-value=3.8e-05 Score=62.80 Aligned_cols=40 Identities=23% Similarity=0.341 Sum_probs=30.9
Q ss_pred CCCCCCceEEECCCCCcHHHHHHHHHHHh---------CCeEEEEechh
Q psy6208 116 GVKPPRGILLYGPPGTGKTLIARAVANET---------GAFFFLINGPE 155 (197)
Q Consensus 116 ~~~~~~~ill~G~~GtGKT~la~ala~~~---------~~~~~~v~~~~ 155 (197)
++....-+.|+||+|+|||+|++.++... +..+++++..+
T Consensus 127 gi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~ 175 (349)
T 1pzn_A 127 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN 175 (349)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSS
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCC
Confidence 35555668999999999999999998876 24667877643
No 157
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=97.75 E-value=1.6e-05 Score=60.68 Aligned_cols=33 Identities=15% Similarity=0.261 Sum_probs=28.0
Q ss_pred CCCceEEECCCCCcHHHHHHHHHHHhCCeEEEE
Q psy6208 119 PPRGILLYGPPGTGKTLIARAVANETGAFFFLI 151 (197)
Q Consensus 119 ~~~~ill~G~~GtGKT~la~ala~~~~~~~~~v 151 (197)
.+..|+|.|+||+|||++++.+++.++..++..
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 38 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITTHFELKHLSS 38 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHHHSSSEEEEH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHcCCeEEec
Confidence 345699999999999999999999998776654
No 158
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.74 E-value=2.4e-05 Score=57.61 Aligned_cols=30 Identities=33% Similarity=0.565 Sum_probs=26.2
Q ss_pred CceEEECCCCCcHHHHHHHHHHHhCCeEEE
Q psy6208 121 RGILLYGPPGTGKTLIARAVANETGAFFFL 150 (197)
Q Consensus 121 ~~ill~G~~GtGKT~la~ala~~~~~~~~~ 150 (197)
..|+|.|++|+||||+++.+++.++.+++.
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l~~~~i~ 34 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQELGFKKLS 34 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTCEEEC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCeEec
Confidence 458999999999999999999999876544
No 159
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=97.73 E-value=1.9e-05 Score=57.98 Aligned_cols=30 Identities=30% Similarity=0.382 Sum_probs=23.0
Q ss_pred CCceEEECCCCCcHHHHHHHHHHHhCCeEE
Q psy6208 120 PRGILLYGPPGTGKTLIARAVANETGAFFF 149 (197)
Q Consensus 120 ~~~ill~G~~GtGKT~la~ala~~~~~~~~ 149 (197)
+..|+|.|+||+|||++++.+++.++.+++
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 346899999999999999999999998876
No 160
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.72 E-value=1.8e-05 Score=59.78 Aligned_cols=30 Identities=23% Similarity=0.416 Sum_probs=26.5
Q ss_pred ceEEECCCCCcHHHHHHHHHHHhCCeEEEE
Q psy6208 122 GILLYGPPGTGKTLIARAVANETGAFFFLI 151 (197)
Q Consensus 122 ~ill~G~~GtGKT~la~ala~~~~~~~~~v 151 (197)
.|+|.|+||+||||+++.+++.++.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYGIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEeH
Confidence 478999999999999999999998776654
No 161
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=97.72 E-value=2.1e-05 Score=56.89 Aligned_cols=30 Identities=20% Similarity=0.307 Sum_probs=26.6
Q ss_pred ceEEECCCCCcHHHHHHHHHHHhCCeEEEE
Q psy6208 122 GILLYGPPGTGKTLIARAVANETGAFFFLI 151 (197)
Q Consensus 122 ~ill~G~~GtGKT~la~ala~~~~~~~~~v 151 (197)
.|+|.|++|+|||++++.+++.++.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~ 31 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNIPFYDV 31 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTCCEEEH
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 488999999999999999999999877653
No 162
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.72 E-value=2e-05 Score=59.54 Aligned_cols=30 Identities=27% Similarity=0.362 Sum_probs=26.4
Q ss_pred ceEEECCCCCcHHHHHHHHHHHhCCeEEEE
Q psy6208 122 GILLYGPPGTGKTLIARAVANETGAFFFLI 151 (197)
Q Consensus 122 ~ill~G~~GtGKT~la~ala~~~~~~~~~v 151 (197)
.|+|.|+||+||||+++.++..++.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYEIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEeeH
Confidence 378999999999999999999998877654
No 163
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=97.71 E-value=2.4e-05 Score=57.70 Aligned_cols=32 Identities=22% Similarity=0.453 Sum_probs=27.5
Q ss_pred CCceEEECCCCCcHHHHHHHHHHHhCCeEEEE
Q psy6208 120 PRGILLYGPPGTGKTLIARAVANETGAFFFLI 151 (197)
Q Consensus 120 ~~~ill~G~~GtGKT~la~ala~~~~~~~~~v 151 (197)
+..|+|.|++|+|||++++.++..++.+++..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~ 37 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDFGWVHLSA 37 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEeeH
Confidence 44689999999999999999999998766544
No 164
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.71 E-value=2e-05 Score=57.51 Aligned_cols=34 Identities=35% Similarity=0.522 Sum_probs=25.8
Q ss_pred CceEEECCCCCcHHHHHHHHHH-HhCCeEEEEechhh
Q psy6208 121 RGILLYGPPGTGKTLIARAVAN-ETGAFFFLINGPEI 156 (197)
Q Consensus 121 ~~ill~G~~GtGKT~la~ala~-~~~~~~~~v~~~~~ 156 (197)
..|+|.|+||+|||++++.++. ..+. ..++...+
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~~~~~~--~~i~~d~~ 37 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIAKNPGF--YNINRDDY 37 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTTE--EEECHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHhhcCCc--EEecHHHH
Confidence 3589999999999999999998 4554 44444333
No 165
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=97.71 E-value=0.00016 Score=67.42 Aligned_cols=50 Identities=18% Similarity=0.194 Sum_probs=39.2
Q ss_pred CCcccccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHH
Q psy6208 83 VGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANE 143 (197)
Q Consensus 83 ~~~~~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~ 143 (197)
.....++|.+..+++|.+.+... -...+-+.|+|+.|+|||+||+.+++.
T Consensus 121 ~~~~~~vgR~~~~~~l~~~l~~~-----------~~~~~~v~i~G~gG~GKTtLa~~~~~~ 170 (1249)
T 3sfz_A 121 QRPVIFVTRKKLVHAIQQKLWKL-----------NGEPGWVTIYGMAGCGKSVLAAEAVRD 170 (1249)
T ss_dssp CCCSSCCCCHHHHHHHHHHHHTT-----------TTSCEEEEEECSTTSSHHHHHHHHTCC
T ss_pred CCCceeccHHHHHHHHHHHHhhc-----------cCCCCEEEEEeCCCCCHHHHHHHHhcC
Confidence 34456999999999999988532 123445889999999999999988764
No 166
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.71 E-value=1e-05 Score=70.39 Aligned_cols=33 Identities=39% Similarity=0.484 Sum_probs=26.4
Q ss_pred CCceEEECCCCCcHHHHHHHHHHHh---CCeEEEEe
Q psy6208 120 PRGILLYGPPGTGKTLIARAVANET---GAFFFLIN 152 (197)
Q Consensus 120 ~~~ill~G~~GtGKT~la~ala~~~---~~~~~~v~ 152 (197)
...++|.|+||||||+++.+++..+ +.+++.+.
T Consensus 204 ~~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~A 239 (574)
T 3e1s_A 204 HRLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCA 239 (574)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEec
Confidence 4578999999999999999998754 56666553
No 167
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.70 E-value=2.7e-05 Score=57.35 Aligned_cols=25 Identities=20% Similarity=0.413 Sum_probs=23.0
Q ss_pred CceEEECCCCCcHHHHHHHHHHHhC
Q psy6208 121 RGILLYGPPGTGKTLIARAVANETG 145 (197)
Q Consensus 121 ~~ill~G~~GtGKT~la~ala~~~~ 145 (197)
..|+|.|+||+||||+++.++..++
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4689999999999999999999886
No 168
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=97.70 E-value=2.3e-05 Score=58.21 Aligned_cols=32 Identities=22% Similarity=0.348 Sum_probs=27.5
Q ss_pred CCceEEECCCCCcHHHHHHHHHHHhCCeEEEE
Q psy6208 120 PRGILLYGPPGTGKTLIARAVANETGAFFFLI 151 (197)
Q Consensus 120 ~~~ill~G~~GtGKT~la~ala~~~~~~~~~v 151 (197)
+..|+|.|+||+|||++++.++..++.+++..
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~ 43 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKYGFTHLST 43 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCeEEcH
Confidence 44699999999999999999999998766543
No 169
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.70 E-value=5.1e-05 Score=63.17 Aligned_cols=40 Identities=23% Similarity=0.264 Sum_probs=29.7
Q ss_pred CCCCCCceEEECCCCCcHHHHHHHHHHHh---------CCeEEEEechh
Q psy6208 116 GVKPPRGILLYGPPGTGKTLIARAVANET---------GAFFFLINGPE 155 (197)
Q Consensus 116 ~~~~~~~ill~G~~GtGKT~la~ala~~~---------~~~~~~v~~~~ 155 (197)
|+....-+.|+||||+|||+|++.++... +..+++++...
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~ 222 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEG 222 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCC
Confidence 45556668999999999999999776432 34577877643
No 170
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.70 E-value=3.6e-05 Score=56.12 Aligned_cols=31 Identities=32% Similarity=0.428 Sum_probs=26.3
Q ss_pred CCceEEECCCCCcHHHHHHHHHHHhCCeEEE
Q psy6208 120 PRGILLYGPPGTGKTLIARAVANETGAFFFL 150 (197)
Q Consensus 120 ~~~ill~G~~GtGKT~la~ala~~~~~~~~~ 150 (197)
...++|.|++|+|||++++.++..++..++.
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~g~~~i~ 38 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQLHAAFLD 38 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHTCEEEE
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhhCcEEEe
Confidence 3458999999999999999999988866554
No 171
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=97.70 E-value=4e-05 Score=58.81 Aligned_cols=32 Identities=28% Similarity=0.388 Sum_probs=27.8
Q ss_pred CCceEEECCCCCcHHHHHHHHHHHhCCeEEEE
Q psy6208 120 PRGILLYGPPGTGKTLIARAVANETGAFFFLI 151 (197)
Q Consensus 120 ~~~ill~G~~GtGKT~la~ala~~~~~~~~~v 151 (197)
+..|+|.|++|+||||+++.|++.++..++..
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 47 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNFCVCHLAT 47 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCceecH
Confidence 45699999999999999999999999776554
No 172
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.69 E-value=4e-05 Score=57.36 Aligned_cols=31 Identities=48% Similarity=0.748 Sum_probs=26.4
Q ss_pred CCCceEEECCCCCcHHHHHHHHHHHhCCeEE
Q psy6208 119 PPRGILLYGPPGTGKTLIARAVANETGAFFF 149 (197)
Q Consensus 119 ~~~~ill~G~~GtGKT~la~ala~~~~~~~~ 149 (197)
.+..+.|.||+|+|||++++.++..+|..++
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~g~~~i 58 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADETGLEFA 58 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHCCEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhhCCeEE
Confidence 4556899999999999999999999876544
No 173
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.69 E-value=4.3e-05 Score=56.04 Aligned_cols=37 Identities=27% Similarity=0.424 Sum_probs=31.6
Q ss_pred CCceEEECCCCCcHHHHHHHHHHHh---CCeEEEEechhh
Q psy6208 120 PRGILLYGPPGTGKTLIARAVANET---GAFFFLINGPEI 156 (197)
Q Consensus 120 ~~~ill~G~~GtGKT~la~ala~~~---~~~~~~v~~~~~ 156 (197)
+..+.|.|++|+|||++++.++..+ |.+++.++...+
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~~ 44 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNI 44 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChHH
Confidence 4568899999999999999999987 888888876544
No 174
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=97.69 E-value=2e-05 Score=59.85 Aligned_cols=31 Identities=26% Similarity=0.475 Sum_probs=27.5
Q ss_pred CceEEECCCCCcHHHHHHHHHHHhCCeEEEE
Q psy6208 121 RGILLYGPPGTGKTLIARAVANETGAFFFLI 151 (197)
Q Consensus 121 ~~ill~G~~GtGKT~la~ala~~~~~~~~~v 151 (197)
..|+|.|+||+|||++++.++..++.+++..
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 36 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEYGLAHLST 36 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCceEEeh
Confidence 4689999999999999999999999877654
No 175
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.68 E-value=4.5e-05 Score=57.11 Aligned_cols=39 Identities=23% Similarity=0.465 Sum_probs=30.9
Q ss_pred CCCCceEEECCCCCcHHHHHHHHHHHh---CCeEEEEechhh
Q psy6208 118 KPPRGILLYGPPGTGKTLIARAVANET---GAFFFLINGPEI 156 (197)
Q Consensus 118 ~~~~~ill~G~~GtGKT~la~ala~~~---~~~~~~v~~~~~ 156 (197)
.++..+.|.||+|+|||+++++++..+ |...++++...+
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~ 64 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNV 64 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchh
Confidence 445668999999999999999999987 555556766555
No 176
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=97.68 E-value=3e-05 Score=62.95 Aligned_cols=72 Identities=18% Similarity=0.260 Sum_probs=46.5
Q ss_pred CCCceEEECCCCCcHHHHHHHHHHHhC--CeEEEEechh-hh-----hh--ccCccHHHHHHHHHHHhcCCCeEEEEccc
Q psy6208 119 PPRGILLYGPPGTGKTLIARAVANETG--AFFFLINGPE-IM-----SK--LAGESESNLRKAFEEADKNSPSIIFIDEL 188 (197)
Q Consensus 119 ~~~~ill~G~~GtGKT~la~ala~~~~--~~~~~v~~~~-~~-----~~--~~~~~~~~~~~~~~~a~~~~~~vl~lDei 188 (197)
....++|.||+|+||||++++++.... ...+.++... +. .. +........+..+..+....|++|++||.
T Consensus 170 ~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~~~~~~~i~~~~ggg~~~r~~la~aL~~~p~ilildE~ 249 (330)
T 2pt7_A 170 IGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKHHKNYTQLFFGGNITSADCLKSCLRMRPDRIILGEL 249 (330)
T ss_dssp HTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCCSSCSSEEEEECBTTBCHHHHHHHHTTSCCSEEEECCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccccccchhEEEEEeCCChhHHHHHHHHhhhCCCEEEEcCC
Confidence 455799999999999999999988762 2344444321 11 00 11001123345566777788999999997
Q ss_pred Cc
Q psy6208 189 DA 190 (197)
Q Consensus 189 d~ 190 (197)
-.
T Consensus 250 ~~ 251 (330)
T 2pt7_A 250 RS 251 (330)
T ss_dssp CS
T ss_pred Ch
Confidence 54
No 177
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=97.67 E-value=3.9e-05 Score=58.61 Aligned_cols=38 Identities=16% Similarity=0.341 Sum_probs=30.1
Q ss_pred CCCCceEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhh
Q psy6208 118 KPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIM 157 (197)
Q Consensus 118 ~~~~~ill~G~~GtGKT~la~ala~~~~~~~~~v~~~~~~ 157 (197)
..++-|+|.||||+||+|.|+.|++.++.+. ++..+++
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~g~~h--IstGdll 64 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKFHFNH--LSSGDLL 64 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHHCCEE--ECHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHCCce--EcHHHHH
Confidence 4456688999999999999999999998654 4554544
No 178
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=97.67 E-value=2.9e-05 Score=59.05 Aligned_cols=32 Identities=16% Similarity=0.302 Sum_probs=27.3
Q ss_pred CCCceEEECCCCCcHHHHHHHHHHHhCCeEEE
Q psy6208 119 PPRGILLYGPPGTGKTLIARAVANETGAFFFL 150 (197)
Q Consensus 119 ~~~~ill~G~~GtGKT~la~ala~~~~~~~~~ 150 (197)
.+..|+|.|+||+|||++++.+++.++..++.
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~ 35 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKYQLAHIS 35 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHHCCEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCceec
Confidence 34579999999999999999999999875543
No 179
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=97.66 E-value=2.9e-05 Score=58.02 Aligned_cols=32 Identities=19% Similarity=0.304 Sum_probs=27.3
Q ss_pred CCceEEECCCCCcHHHHHHHHHHHhCCeEEEE
Q psy6208 120 PRGILLYGPPGTGKTLIARAVANETGAFFFLI 151 (197)
Q Consensus 120 ~~~ill~G~~GtGKT~la~ala~~~~~~~~~v 151 (197)
+..|+|.|++|+|||++++.+++.++.+++..
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~ 46 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSA 46 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHSSCEEEEH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCceEEeH
Confidence 34589999999999999999999998766554
No 180
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=97.66 E-value=2e-05 Score=64.43 Aligned_cols=30 Identities=27% Similarity=0.499 Sum_probs=26.2
Q ss_pred CceEEECCCCCcHHHHHHHHHHHhCCeEEE
Q psy6208 121 RGILLYGPPGTGKTLIARAVANETGAFFFL 150 (197)
Q Consensus 121 ~~ill~G~~GtGKT~la~ala~~~~~~~~~ 150 (197)
.+++|.|++|+|||+++++++..++.+++.
T Consensus 25 ~~i~l~G~~G~GKTTl~~~la~~l~~~f~~ 54 (359)
T 2ga8_A 25 VCVILVGSPGSGKSTIAEELCQIINEKYHT 54 (359)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHHhCCCeee
Confidence 459999999999999999999998876644
No 181
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=97.66 E-value=0.00015 Score=60.63 Aligned_cols=94 Identities=16% Similarity=0.375 Sum_probs=52.3
Q ss_pred CCCcccccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHhC---CeEEEEech-hhh
Q psy6208 82 AVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANETG---AFFFLINGP-EIM 157 (197)
Q Consensus 82 ~~~~~~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~~---~~~~~v~~~-~~~ 157 (197)
..++++++-.......+...+. .+...++|.||+|+||||++++++..+. ..++.+.-+ +..
T Consensus 143 ~~~l~~Lg~~~~~~~~L~~l~~--------------~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~ 208 (418)
T 1p9r_A 143 RLDLHSLGMTAHNHDNFRRLIK--------------RPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFD 208 (418)
T ss_dssp CCCGGGSCCCHHHHHHHHHHHT--------------SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSC
T ss_pred CCCHHHcCCCHHHHHHHHHHHH--------------hcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhc
Confidence 3456666544444444444421 2344589999999999999999998773 344443321 110
Q ss_pred -h-----hccCccHHHHHHHHHHHhcCCCeEEEEcccC
Q psy6208 158 -S-----KLAGESESNLRKAFEEADKNSPSIIFIDELD 189 (197)
Q Consensus 158 -~-----~~~~~~~~~~~~~~~~a~~~~~~vl~lDeid 189 (197)
. .......-.....+..+.+..|++++++|+.
T Consensus 209 ~~~~~q~~v~~~~g~~f~~~lr~~Lrq~pd~i~vgEiR 246 (418)
T 1p9r_A 209 IDGIGQTQVNPRVDMTFARGLRAILRQDPDVVMVGEIR 246 (418)
T ss_dssp CSSSEEEECBGGGTBCHHHHHHHHGGGCCSEEEESCCC
T ss_pred cCCcceEEEccccCcCHHHHHHHHhccCCCeEEEcCcC
Confidence 0 0000000122334455555678999998853
No 182
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=97.64 E-value=3.9e-05 Score=61.80 Aligned_cols=40 Identities=23% Similarity=0.238 Sum_probs=31.0
Q ss_pred CCCCCCceEEECCCCCcHHHHHHHHHHHh---------------C----CeEEEEechh
Q psy6208 116 GVKPPRGILLYGPPGTGKTLIARAVANET---------------G----AFFFLINGPE 155 (197)
Q Consensus 116 ~~~~~~~ill~G~~GtGKT~la~ala~~~---------------~----~~~~~v~~~~ 155 (197)
|+....-++|+|+||+|||+++..++... + ..+++++...
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~ 152 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEG 152 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSS
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCC
Confidence 34555668999999999999999998752 2 5788887654
No 183
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=97.64 E-value=5e-05 Score=55.88 Aligned_cols=35 Identities=23% Similarity=0.204 Sum_probs=27.8
Q ss_pred ceEEECCCCCcHHHHHHHHHHHhC---CeEEEEechhh
Q psy6208 122 GILLYGPPGTGKTLIARAVANETG---AFFFLINGPEI 156 (197)
Q Consensus 122 ~ill~G~~GtGKT~la~ala~~~~---~~~~~v~~~~~ 156 (197)
.|+|.|+||+||||+++.+++.++ .++..++..++
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~~~ 40 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDF 40 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEECChH
Confidence 488999999999999999999875 34566664444
No 184
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=97.63 E-value=8.6e-05 Score=71.46 Aligned_cols=77 Identities=23% Similarity=0.357 Sum_probs=58.0
Q ss_pred CCCceEEECCCCCcHHHHHHHHHHH---hCCeEEEEechhhhh----------------hccCccHHHHHHHHHHHhcCC
Q psy6208 119 PPRGILLYGPPGTGKTLIARAVANE---TGAFFFLINGPEIMS----------------KLAGESESNLRKAFEEADKNS 179 (197)
Q Consensus 119 ~~~~ill~G~~GtGKT~la~ala~~---~~~~~~~v~~~~~~~----------------~~~~~~~~~~~~~~~~a~~~~ 179 (197)
..+.+.++||+|+|||+||-.++.+ .|....+++.++-.. ..+...+..+..+....+.+.
T Consensus 1430 rg~~iei~g~~~sGkttl~~~~~a~~~~~g~~~~~i~~e~~~~~~~~~~~Gv~~~~l~~~~p~~~e~~l~~~~~~~~s~~ 1509 (1706)
T 3cmw_A 1430 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGA 1509 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTC
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEecCCCCCHHHHHHcCCCHHHeEEeCCCcHHHHHHHHHHHHHcCC
Confidence 3445999999999999999877543 377888888653221 123445667777777788889
Q ss_pred CeEEEEcccCccCccc
Q psy6208 180 PSIIFIDELDAIAPKR 195 (197)
Q Consensus 180 ~~vl~lDeid~l~~~r 195 (197)
+++|++|-+..|.|+.
T Consensus 1510 ~~~vvvDsv~al~~~~ 1525 (1706)
T 3cmw_A 1510 VDVIVVDSVAALTPKA 1525 (1706)
T ss_dssp CSEEEESCSTTCCCTT
T ss_pred CCEEEEccHHhCCccc
Confidence 9999999999999875
No 185
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=97.63 E-value=4.7e-05 Score=57.66 Aligned_cols=34 Identities=35% Similarity=0.645 Sum_probs=27.6
Q ss_pred ceEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhh
Q psy6208 122 GILLYGPPGTGKTLIARAVANETGAFFFLINGPEIM 157 (197)
Q Consensus 122 ~ill~G~~GtGKT~la~ala~~~~~~~~~v~~~~~~ 157 (197)
.|+|.||||+||+|.|+.|++.++.+. ++..+++
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g~~~--istGdll 35 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKGFVH--ISTGDIL 35 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEE--EEHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCeE--EcHHHHH
Confidence 378999999999999999999998765 4444443
No 186
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=97.61 E-value=4.9e-05 Score=61.47 Aligned_cols=35 Identities=31% Similarity=0.511 Sum_probs=30.3
Q ss_pred CCceEEECCCCCcHHHHHHHHHHHhCCeEEEEech
Q psy6208 120 PRGILLYGPPGTGKTLIARAVANETGAFFFLINGP 154 (197)
Q Consensus 120 ~~~ill~G~~GtGKT~la~ala~~~~~~~~~v~~~ 154 (197)
+..++|.||+|+|||++++.+|..++..++.++.-
T Consensus 5 ~~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds~ 39 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALADALPCELISVDSA 39 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSCEEEEEECTT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCcEEeccch
Confidence 34689999999999999999999999888777643
No 187
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=97.60 E-value=0.00023 Score=61.47 Aligned_cols=44 Identities=16% Similarity=0.125 Sum_probs=35.2
Q ss_pred cCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHH
Q psy6208 89 GGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 142 (197)
Q Consensus 89 ~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~ 142 (197)
.|.+..+++|.+++...- -.....+.|+|+.|+|||+||+.+++
T Consensus 131 ~GR~~~~~~l~~~L~~~~----------~~~~~vv~I~G~gGvGKTtLA~~v~~ 174 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMC----------DLDSFFLFLHGRAGSGKSVIASQALS 174 (549)
T ss_dssp CCCHHHHHHHHHHHHHHT----------TSSSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhccc----------CCCceEEEEEcCCCCCHHHHHHHHHH
Confidence 499999999999885320 12345688999999999999999997
No 188
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=97.60 E-value=4.2e-05 Score=64.78 Aligned_cols=69 Identities=19% Similarity=0.135 Sum_probs=40.2
Q ss_pred CceEEECCCCCcHHHHHHHH-HHHhCCeEEEEec-----hhhhhhccCc-cHHHHHHHHHHHhcCCCeEEEEcccCccCc
Q psy6208 121 RGILLYGPPGTGKTLIARAV-ANETGAFFFLING-----PEIMSKLAGE-SESNLRKAFEEADKNSPSIIFIDELDAIAP 193 (197)
Q Consensus 121 ~~ill~G~~GtGKT~la~al-a~~~~~~~~~v~~-----~~~~~~~~~~-~~~~~~~~~~~a~~~~~~vl~lDeid~l~~ 193 (197)
.++||.|+||+ ||.+++++ +..+.... ++.. ..+.....+. ....-.+.+..|.. .++|+||++.+.+
T Consensus 240 ihVLL~G~PGt-KS~Lar~i~~~i~pR~~-ft~g~~ss~~gLt~s~r~~tG~~~~~G~l~LAdg---Gvl~lDEIn~~~~ 314 (506)
T 3f8t_A 240 LHVLLAGYPVV-CSEILHHVLDHLAPRGV-YVDLRRTELTDLTAVLKEDRGWALRAGAAVLADG---GILAVDHLEGAPE 314 (506)
T ss_dssp CCEEEESCHHH-HHHHHHHHHHHTCSSEE-EEEGGGCCHHHHSEEEEESSSEEEEECHHHHTTT---SEEEEECCTTCCH
T ss_pred eeEEEECCCCh-HHHHHHHHHHHhCCCeE-EecCCCCCccCceEEEEcCCCcccCCCeeEEcCC---CeeehHhhhhCCH
Confidence 37999999999 99999999 77664433 3321 1111110000 00000122334433 4999999999876
Q ss_pred c
Q psy6208 194 K 194 (197)
Q Consensus 194 ~ 194 (197)
+
T Consensus 315 ~ 315 (506)
T 3f8t_A 315 P 315 (506)
T ss_dssp H
T ss_pred H
Confidence 4
No 189
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=97.59 E-value=6.4e-05 Score=55.42 Aligned_cols=31 Identities=32% Similarity=0.342 Sum_probs=27.2
Q ss_pred ceEEECCCCCcHHHHHHHHHHHh---CCeEEEEe
Q psy6208 122 GILLYGPPGTGKTLIARAVANET---GAFFFLIN 152 (197)
Q Consensus 122 ~ill~G~~GtGKT~la~ala~~~---~~~~~~v~ 152 (197)
.|.|.|++|+||||+++.+++.+ +.+++..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d 35 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYR 35 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 37899999999999999999988 88877664
No 190
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=97.59 E-value=8.8e-05 Score=56.83 Aligned_cols=37 Identities=27% Similarity=0.265 Sum_probs=28.8
Q ss_pred CCCCCceEEECCCCCcHHHHHHHHHHH----hCCeEEEEec
Q psy6208 117 VKPPRGILLYGPPGTGKTLIARAVANE----TGAFFFLING 153 (197)
Q Consensus 117 ~~~~~~ill~G~~GtGKT~la~ala~~----~~~~~~~v~~ 153 (197)
+.++.-++|+|+||+|||+++..++.. .+.++++++.
T Consensus 27 l~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~ 67 (251)
T 2zts_A 27 FPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTL 67 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEES
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecc
Confidence 456667899999999999999887643 2667777764
No 191
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.57 E-value=5.8e-05 Score=56.11 Aligned_cols=29 Identities=28% Similarity=0.547 Sum_probs=25.7
Q ss_pred ceEEECCCCCcHHHHHHHHHHHhCCeEEE
Q psy6208 122 GILLYGPPGTGKTLIARAVANETGAFFFL 150 (197)
Q Consensus 122 ~ill~G~~GtGKT~la~ala~~~~~~~~~ 150 (197)
.|.|.|++|+||||+++.+++.++..++.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~~~~~ 30 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGYEIFK 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCCEEEC
T ss_pred EEEEECCCccCHHHHHHHHHHhcCCcEEc
Confidence 47899999999999999999999886653
No 192
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.57 E-value=7.6e-05 Score=56.60 Aligned_cols=30 Identities=27% Similarity=0.390 Sum_probs=26.3
Q ss_pred CceEEECCCCCcHHHHHHHHHHHhCCeEEE
Q psy6208 121 RGILLYGPPGTGKTLIARAVANETGAFFFL 150 (197)
Q Consensus 121 ~~ill~G~~GtGKT~la~ala~~~~~~~~~ 150 (197)
..|.|.|++|+||||+++.++..++.+++.
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d 35 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQWHLLD 35 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCccc
Confidence 468999999999999999999998876654
No 193
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=97.57 E-value=0.00024 Score=59.93 Aligned_cols=38 Identities=21% Similarity=0.278 Sum_probs=30.5
Q ss_pred CCCCCCceEEECCCCCcHHHHHHHHHHHh----CCeEEEEec
Q psy6208 116 GVKPPRGILLYGPPGTGKTLIARAVANET----GAFFFLING 153 (197)
Q Consensus 116 ~~~~~~~ill~G~~GtGKT~la~ala~~~----~~~~~~v~~ 153 (197)
|+.++.-++|.|+||+|||+++..++... +.++++++.
T Consensus 199 Gl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~ 240 (454)
T 2r6a_A 199 GFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSL 240 (454)
T ss_dssp SBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEES
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEEC
Confidence 46666779999999999999999987653 557877764
No 194
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=97.55 E-value=5.8e-05 Score=57.05 Aligned_cols=30 Identities=27% Similarity=0.324 Sum_probs=26.5
Q ss_pred ceEEECCCCCcHHHHHHHHHHHhCCeEEEE
Q psy6208 122 GILLYGPPGTGKTLIARAVANETGAFFFLI 151 (197)
Q Consensus 122 ~ill~G~~GtGKT~la~ala~~~~~~~~~v 151 (197)
.|+|.|+||+||||+++.++..++.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g~~~i~~ 31 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYGIPQIST 31 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence 488999999999999999999998776554
No 195
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=97.54 E-value=5.2e-05 Score=59.17 Aligned_cols=32 Identities=34% Similarity=0.517 Sum_probs=28.5
Q ss_pred CCceEEECCCCCcHHHHHHHHHHHhCCeEEEE
Q psy6208 120 PRGILLYGPPGTGKTLIARAVANETGAFFFLI 151 (197)
Q Consensus 120 ~~~ill~G~~GtGKT~la~ala~~~~~~~~~v 151 (197)
...|.|.|++|+|||++++.++..++.+++..
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~ 79 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLGYTFFDC 79 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCcEEeC
Confidence 55799999999999999999999999877654
No 196
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=97.54 E-value=7.4e-05 Score=56.99 Aligned_cols=30 Identities=27% Similarity=0.451 Sum_probs=25.9
Q ss_pred ceEEECCCCCcHHHHHHHHHHHhCCeEEEE
Q psy6208 122 GILLYGPPGTGKTLIARAVANETGAFFFLI 151 (197)
Q Consensus 122 ~ill~G~~GtGKT~la~ala~~~~~~~~~v 151 (197)
.|+|.|+||+||||+++.++..++.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg~~~i~~ 31 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYSLAHIES 31 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEch
Confidence 478999999999999999999998765543
No 197
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=97.54 E-value=7.3e-05 Score=55.68 Aligned_cols=33 Identities=18% Similarity=0.157 Sum_probs=27.9
Q ss_pred CCceEEECCCCCcHHHHHHHHHHHh-CCeEEEEe
Q psy6208 120 PRGILLYGPPGTGKTLIARAVANET-GAFFFLIN 152 (197)
Q Consensus 120 ~~~ill~G~~GtGKT~la~ala~~~-~~~~~~v~ 152 (197)
+..|.|.|++|+||||+++.+++.+ +.+++.+.
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~ 37 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESIPANTIKYLN 37 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEE
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEe
Confidence 4568999999999999999999998 56666654
No 198
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.53 E-value=9e-05 Score=55.59 Aligned_cols=28 Identities=25% Similarity=0.421 Sum_probs=24.7
Q ss_pred CCCCceEEECCCCCcHHHHHHHHHHHhC
Q psy6208 118 KPPRGILLYGPPGTGKTLIARAVANETG 145 (197)
Q Consensus 118 ~~~~~ill~G~~GtGKT~la~ala~~~~ 145 (197)
..+..++|.||||+|||++++.++..++
T Consensus 10 ~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 10 ARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 4566799999999999999999998874
No 199
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=97.53 E-value=8.6e-05 Score=54.94 Aligned_cols=30 Identities=27% Similarity=0.314 Sum_probs=25.8
Q ss_pred eEEECCCCCcHHHHHHHHHHHh---CCeEEEEe
Q psy6208 123 ILLYGPPGTGKTLIARAVANET---GAFFFLIN 152 (197)
Q Consensus 123 ill~G~~GtGKT~la~ala~~~---~~~~~~v~ 152 (197)
|.|.|++|+||||+++.+++.+ +.+++...
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~~ 35 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKR 35 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHCCC-EEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEee
Confidence 7899999999999999999998 88877553
No 200
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=97.53 E-value=0.00014 Score=73.50 Aligned_cols=67 Identities=22% Similarity=0.323 Sum_probs=51.3
Q ss_pred CCceEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhhhccCccHHHHHHHHHHHhcCCCeEEEEcccCccCc
Q psy6208 120 PRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPSIIFIDELDAIAP 193 (197)
Q Consensus 120 ~~~ill~G~~GtGKT~la~ala~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~vl~lDeid~l~~ 193 (197)
..+..+.||+|||||.+++.+|+.+|.+++.++|++-+.. ..+..+|..+... .+..++||++++..
T Consensus 604 ~~gg~~~GPaGtGKTet~k~La~~lgr~~~vfnC~~~~d~------~~~g~i~~G~~~~-GaW~cfDEfNrl~~ 670 (3245)
T 3vkg_A 604 RMGGNPFGPAGTGKTETVKALGSQLGRFVLVFCCDEGFDL------QAMSRIFVGLCQC-GAWGCFDEFNRLEE 670 (3245)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHTTCCEEEEECSSCCCH------HHHHHHHHHHHHH-TCEEEEETTTSSCH
T ss_pred cCCCCCCCCCCCCHHHHHHHHHHHhCCeEEEEeCCCCCCH------HHHHHHHhhHhhc-CcEEEehhhhcCCH
Confidence 3456899999999999999999999999999999765322 2344555554432 35789999998764
No 201
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.52 E-value=5e-05 Score=56.79 Aligned_cols=30 Identities=30% Similarity=0.433 Sum_probs=25.9
Q ss_pred ceEEECCCCCcHHHHHHHHHHHhCCeEEEEe
Q psy6208 122 GILLYGPPGTGKTLIARAVANETGAFFFLIN 152 (197)
Q Consensus 122 ~ill~G~~GtGKT~la~ala~~~~~~~~~v~ 152 (197)
.|.|.|++|+|||++++.++. ++.+++..+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~g~~~i~~d 32 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-LGAYVLDAD 32 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-TTCEEEEHH
T ss_pred EEEEECCCCcCHHHHHHHHHH-CCCEEEEcc
Confidence 478999999999999999999 887776544
No 202
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=97.51 E-value=5.7e-05 Score=64.82 Aligned_cols=71 Identities=21% Similarity=0.227 Sum_probs=45.0
Q ss_pred CCCceEEECCCCCcHHHHHHHHHHHhC--CeEEEEechh-hhhh-----------ccCccHHHHHHHHHHHhcCCCeEEE
Q psy6208 119 PPRGILLYGPPGTGKTLIARAVANETG--AFFFLINGPE-IMSK-----------LAGESESNLRKAFEEADKNSPSIIF 184 (197)
Q Consensus 119 ~~~~ill~G~~GtGKT~la~ala~~~~--~~~~~v~~~~-~~~~-----------~~~~~~~~~~~~~~~a~~~~~~vl~ 184 (197)
.+.+++|.||+|+||||++++++.... ...+.+.... +... ..+.....+..++..+.+..|++++
T Consensus 259 ~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~~l~~~LR~~PD~ii 338 (511)
T 2oap_1 259 HKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYDLLRAALRQRPDYII 338 (511)
T ss_dssp TTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHHHHHTTGGGCCSEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHHHHHHhhccCCCeEE
Confidence 455799999999999999999988763 3445544321 2100 0011111344455666667899999
Q ss_pred EcccC
Q psy6208 185 IDELD 189 (197)
Q Consensus 185 lDeid 189 (197)
++|+-
T Consensus 339 vgEir 343 (511)
T 2oap_1 339 VGEVR 343 (511)
T ss_dssp ESCCC
T ss_pred eCCcC
Confidence 99874
No 203
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.49 E-value=0.00016 Score=53.19 Aligned_cols=38 Identities=32% Similarity=0.357 Sum_probs=29.9
Q ss_pred CCCceEEECCCCCcHHHHHHHHHHHh---CCeEEEEechhh
Q psy6208 119 PPRGILLYGPPGTGKTLIARAVANET---GAFFFLINGPEI 156 (197)
Q Consensus 119 ~~~~ill~G~~GtGKT~la~ala~~~---~~~~~~v~~~~~ 156 (197)
.+..++|.|++|+|||++++.++..+ +.++..++...+
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~~ 52 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDWA 52 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHHHH
Confidence 45568999999999999999999887 455666665544
No 204
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=97.48 E-value=6.8e-05 Score=56.12 Aligned_cols=71 Identities=18% Similarity=0.203 Sum_probs=41.9
Q ss_pred CceEEECCCCCcHHHHHHHHHHHh---CCeEEEEechh--------hhhhccCcc-----HHHHHHHHHHHhcCCCeEEE
Q psy6208 121 RGILLYGPPGTGKTLIARAVANET---GAFFFLINGPE--------IMSKLAGES-----ESNLRKAFEEADKNSPSIIF 184 (197)
Q Consensus 121 ~~ill~G~~GtGKT~la~ala~~~---~~~~~~v~~~~--------~~~~~~~~~-----~~~~~~~~~~a~~~~~~vl~ 184 (197)
.-.+++||.|+|||+.+..++... +..++.+...- +.+.. +.. -....++++.+. ...++|+
T Consensus 9 ~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k~~~d~r~~~~~i~s~~-g~~~~a~~~~~~~~i~~~~~-~~~dvVi 86 (191)
T 1xx6_A 9 WVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPEIDNRYSKEDVVSHM-GEKEQAVAIKNSREILKYFE-EDTEVIA 86 (191)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC-------CEEECTT-SCEEECEEESSSTHHHHHCC-TTCSEEE
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccCccchHHHHHhhc-CCceeeEeeCCHHHHHHHHh-ccCCEEE
Confidence 357899999999999888887765 66666554210 11110 100 000123444433 2468999
Q ss_pred EcccCccCc
Q psy6208 185 IDELDAIAP 193 (197)
Q Consensus 185 lDeid~l~~ 193 (197)
|||++.+.+
T Consensus 87 IDEaqfl~~ 95 (191)
T 1xx6_A 87 IDEVQFFDD 95 (191)
T ss_dssp ECSGGGSCT
T ss_pred EECCCCCCH
Confidence 999999864
No 205
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=97.47 E-value=9.2e-05 Score=59.47 Aligned_cols=35 Identities=26% Similarity=0.480 Sum_probs=29.6
Q ss_pred CCceEEECCCCCcHHHHHHHHHHHhCCeEEEEech
Q psy6208 120 PRGILLYGPPGTGKTLIARAVANETGAFFFLINGP 154 (197)
Q Consensus 120 ~~~ill~G~~GtGKT~la~ala~~~~~~~~~v~~~ 154 (197)
+.-++|.||+|+|||+|+..+|+.++..++..+.-
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~ 44 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKILPVELISVDSA 44 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSCEEEEECCTT
T ss_pred CcEEEEECCCccCHHHHHHHHHHhCCCcEEecccc
Confidence 44688999999999999999999998777766543
No 206
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=97.45 E-value=6.1e-05 Score=61.20 Aligned_cols=35 Identities=20% Similarity=0.221 Sum_probs=29.5
Q ss_pred CCceEEECCCCCcHHHHHHHHHHHhCCeEEEEech
Q psy6208 120 PRGILLYGPPGTGKTLIARAVANETGAFFFLINGP 154 (197)
Q Consensus 120 ~~~ill~G~~GtGKT~la~ala~~~~~~~~~v~~~ 154 (197)
+..|+|.||+|+|||+|+..||+.++..++..+.-
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~ 74 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKM 74 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTTSCEEEEECCSS
T ss_pred CceEEEECCCCCCHHHHHHHHHHHCCCcEEccccc
Confidence 34689999999999999999999998777765543
No 207
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=97.45 E-value=0.00012 Score=56.44 Aligned_cols=31 Identities=32% Similarity=0.539 Sum_probs=26.8
Q ss_pred CCceEEECCCCCcHHHHHHHHHHHhCCeEEE
Q psy6208 120 PRGILLYGPPGTGKTLIARAVANETGAFFFL 150 (197)
Q Consensus 120 ~~~ill~G~~GtGKT~la~ala~~~~~~~~~ 150 (197)
+..+.|.||+|+|||++++.++..++..++.
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg~~~~d 39 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALGARYLD 39 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCccc
Confidence 4468999999999999999999999876643
No 208
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=97.44 E-value=0.0001 Score=55.00 Aligned_cols=30 Identities=30% Similarity=0.479 Sum_probs=26.7
Q ss_pred ceEEECCCCCcHHHHHHHHHHHhCCeEEEE
Q psy6208 122 GILLYGPPGTGKTLIARAVANETGAFFFLI 151 (197)
Q Consensus 122 ~ill~G~~GtGKT~la~ala~~~~~~~~~v 151 (197)
.|.|.|++|+|||++++.++..++.+++..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d~ 33 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVPYLSS 33 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCceecc
Confidence 588999999999999999999999777653
No 209
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=97.42 E-value=9.6e-05 Score=55.33 Aligned_cols=32 Identities=28% Similarity=0.377 Sum_probs=27.4
Q ss_pred CceEEECCCCCcHHHHHHHHHHHhCCeEEEEe
Q psy6208 121 RGILLYGPPGTGKTLIARAVANETGAFFFLIN 152 (197)
Q Consensus 121 ~~ill~G~~GtGKT~la~ala~~~~~~~~~v~ 152 (197)
..|.|+|++|||||++++.++..+|.+++..+
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~~lg~~vid~D 44 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKNKYGAHVVNVD 44 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCEEEECc
Confidence 34789999999999999999998898776543
No 210
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.41 E-value=0.00013 Score=56.42 Aligned_cols=30 Identities=27% Similarity=0.553 Sum_probs=26.0
Q ss_pred CCceEEECCCCCcHHHHHHHHHHHhCCeEE
Q psy6208 120 PRGILLYGPPGTGKTLIARAVANETGAFFF 149 (197)
Q Consensus 120 ~~~ill~G~~GtGKT~la~ala~~~~~~~~ 149 (197)
+..+.|.||+|+||||+++.+++.++....
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg~~~~ 56 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFGLQHL 56 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCCCE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEe
Confidence 457999999999999999999998876543
No 211
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=97.40 E-value=0.0001 Score=55.04 Aligned_cols=26 Identities=23% Similarity=0.157 Sum_probs=23.6
Q ss_pred CceEEECCCCCcHHHHHHHHHHHhCC
Q psy6208 121 RGILLYGPPGTGKTLIARAVANETGA 146 (197)
Q Consensus 121 ~~ill~G~~GtGKT~la~ala~~~~~ 146 (197)
.-|+|.|+||+||||+++.+++.++.
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 45899999999999999999998866
No 212
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=97.40 E-value=0.00047 Score=58.04 Aligned_cols=38 Identities=21% Similarity=0.215 Sum_probs=30.4
Q ss_pred CCCCCCceEEECCCCCcHHHHHHHHHHHh----CCeEEEEec
Q psy6208 116 GVKPPRGILLYGPPGTGKTLIARAVANET----GAFFFLING 153 (197)
Q Consensus 116 ~~~~~~~ill~G~~GtGKT~la~ala~~~----~~~~~~v~~ 153 (197)
|+.++.-++|.|+||+|||+++..++... +.++++++.
T Consensus 196 Gl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~sl 237 (444)
T 2q6t_A 196 TLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSL 237 (444)
T ss_dssp CCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEES
T ss_pred CcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 46666678999999999999999887643 567888765
No 213
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=97.39 E-value=0.00082 Score=57.29 Aligned_cols=34 Identities=35% Similarity=0.445 Sum_probs=25.9
Q ss_pred CCCCceEEECCCCCcHHHHHHHHHHHh---CCeEEEE
Q psy6208 118 KPPRGILLYGPPGTGKTLIARAVANET---GAFFFLI 151 (197)
Q Consensus 118 ~~~~~ill~G~~GtGKT~la~ala~~~---~~~~~~v 151 (197)
..+..+.|.|++|+||||+++.|+..+ +..+...
T Consensus 291 ~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~ 327 (503)
T 2yhs_A 291 KAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLA 327 (503)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred cCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEe
Confidence 344558899999999999999998765 4445444
No 214
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.38 E-value=0.00016 Score=56.20 Aligned_cols=30 Identities=27% Similarity=0.412 Sum_probs=26.0
Q ss_pred CCceEEECCCCCcHHHHHHHHHHHhCCeEE
Q psy6208 120 PRGILLYGPPGTGKTLIARAVANETGAFFF 149 (197)
Q Consensus 120 ~~~ill~G~~GtGKT~la~ala~~~~~~~~ 149 (197)
...|.|.||+|+|||++++.++..+|..++
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~ 56 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAESLNWRLL 56 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHTTCEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcCCCcC
Confidence 346889999999999999999999887654
No 215
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.38 E-value=0.00016 Score=53.84 Aligned_cols=24 Identities=38% Similarity=0.671 Sum_probs=21.3
Q ss_pred CceEEECCCCCcHHHHHHHHHHHh
Q psy6208 121 RGILLYGPPGTGKTLIARAVANET 144 (197)
Q Consensus 121 ~~ill~G~~GtGKT~la~ala~~~ 144 (197)
+.|+|.||+|+|||+|++.+....
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 459999999999999999998764
No 216
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=97.38 E-value=0.00014 Score=58.60 Aligned_cols=34 Identities=18% Similarity=0.203 Sum_probs=28.4
Q ss_pred CceEEECCCCCcHHHHHHHHHHHhCCeEEEEech
Q psy6208 121 RGILLYGPPGTGKTLIARAVANETGAFFFLINGP 154 (197)
Q Consensus 121 ~~ill~G~~GtGKT~la~ala~~~~~~~~~v~~~ 154 (197)
.-++|.||+|+|||+|+..+|..++..++..+.-
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~ 37 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKRLNGEVISGDSM 37 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHTTTEEEEECCGG
T ss_pred cEEEEECCCcCCHHHHHHHHHHhCccceeecCcc
Confidence 3578999999999999999999988776665544
No 217
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.37 E-value=0.00013 Score=53.68 Aligned_cols=25 Identities=20% Similarity=0.478 Sum_probs=22.1
Q ss_pred CCceEEECCCCCcHHHHHHHHHHHh
Q psy6208 120 PRGILLYGPPGTGKTLIARAVANET 144 (197)
Q Consensus 120 ~~~ill~G~~GtGKT~la~ala~~~ 144 (197)
+.-+.|.||+|+|||+|++.++...
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4568999999999999999998865
No 218
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.37 E-value=0.00017 Score=54.37 Aligned_cols=39 Identities=21% Similarity=0.342 Sum_probs=31.1
Q ss_pred CCCCceEEECCCCCcHHHHHHHHHHHh----CCeEEEEechhh
Q psy6208 118 KPPRGILLYGPPGTGKTLIARAVANET----GAFFFLINGPEI 156 (197)
Q Consensus 118 ~~~~~ill~G~~GtGKT~la~ala~~~----~~~~~~v~~~~~ 156 (197)
..+..++|.|++|+|||++++.++..+ |.+++.++...+
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~ 65 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNI 65 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHH
Confidence 455678999999999999999999876 456777775544
No 219
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.36 E-value=0.00051 Score=54.80 Aligned_cols=72 Identities=18% Similarity=0.202 Sum_probs=44.6
Q ss_pred CCCceEEECCCCCcHHHHHHHHHHHh----CCeEEEEechhhh-------hhc---------cCccHHHHHHHHHHHhcC
Q psy6208 119 PPRGILLYGPPGTGKTLIARAVANET----GAFFFLINGPEIM-------SKL---------AGESESNLRKAFEEADKN 178 (197)
Q Consensus 119 ~~~~ill~G~~GtGKT~la~ala~~~----~~~~~~v~~~~~~-------~~~---------~~~~~~~~~~~~~~a~~~ 178 (197)
.+..+.|.|++|+||||++..+|..+ |..+..+++.... ..+ .......+...+..+ .
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~~~--~ 181 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKELF--S 181 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHHHG--G
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHHHh--c
Confidence 35568899999999999999998654 5567766653210 000 011223344444443 4
Q ss_pred CCeEEEEcccCccC
Q psy6208 179 SPSIIFIDELDAIA 192 (197)
Q Consensus 179 ~~~vl~lDeid~l~ 192 (197)
.+++++||-.....
T Consensus 182 ~~dlvIiDT~G~~~ 195 (296)
T 2px0_A 182 EYDHVFVDTAGRNF 195 (296)
T ss_dssp GSSEEEEECCCCCT
T ss_pred CCCEEEEeCCCCCh
Confidence 57899999665443
No 220
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.36 E-value=0.00011 Score=55.00 Aligned_cols=28 Identities=32% Similarity=0.310 Sum_probs=24.1
Q ss_pred ceEEECCCCCcHHHHHHHHHHHhCCeEEE
Q psy6208 122 GILLYGPPGTGKTLIARAVANETGAFFFL 150 (197)
Q Consensus 122 ~ill~G~~GtGKT~la~ala~~~~~~~~~ 150 (197)
.+.|.|++|+||||+++.++. +|.+++.
T Consensus 4 ~i~l~G~~GsGKST~~~~La~-lg~~~id 31 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD-LGVPLVD 31 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT-TTCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCcccc
Confidence 478999999999999999987 7777654
No 221
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=97.34 E-value=0.00021 Score=55.36 Aligned_cols=38 Identities=16% Similarity=0.243 Sum_probs=30.1
Q ss_pred CCceEEECCCCCcHHHHHHHHHHHhCCe--------EEEEechhhh
Q psy6208 120 PRGILLYGPPGTGKTLIARAVANETGAF--------FFLINGPEIM 157 (197)
Q Consensus 120 ~~~ill~G~~GtGKT~la~ala~~~~~~--------~~~v~~~~~~ 157 (197)
+..|.|.|++|+|||++++.++..++.+ +..++..++.
T Consensus 22 ~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~ 67 (252)
T 1uj2_A 22 PFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFY 67 (252)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGB
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCccc
Confidence 4458899999999999999999998865 3456655554
No 222
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=97.34 E-value=0.0012 Score=58.15 Aligned_cols=32 Identities=28% Similarity=0.406 Sum_probs=22.6
Q ss_pred ceEEECCCCCcHHHHHHHHHHHh---CCeEEEEec
Q psy6208 122 GILLYGPPGTGKTLIARAVANET---GAFFFLING 153 (197)
Q Consensus 122 ~ill~G~~GtGKT~la~ala~~~---~~~~~~v~~ 153 (197)
-.||+||||||||+++-.+...+ +.+++.+..
T Consensus 207 ~~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv~a~ 241 (646)
T 4b3f_X 207 LAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAP 241 (646)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred ceEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEcC
Confidence 47999999999998766554443 556655543
No 223
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=97.33 E-value=0.00015 Score=53.93 Aligned_cols=31 Identities=26% Similarity=0.275 Sum_probs=26.3
Q ss_pred CCceEEECCCCCcHHHHHHHHHHHhCCeEEEE
Q psy6208 120 PRGILLYGPPGTGKTLIARAVANETGAFFFLI 151 (197)
Q Consensus 120 ~~~ill~G~~GtGKT~la~ala~~~~~~~~~v 151 (197)
+..|.|.|++|+|||++++.++.. |.+++..
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~-g~~~id~ 38 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW-GYPVLDL 38 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT-TCCEEEH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC-CCEEEcc
Confidence 446899999999999999999998 7776654
No 224
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=97.33 E-value=0.00063 Score=62.96 Aligned_cols=44 Identities=20% Similarity=0.297 Sum_probs=35.5
Q ss_pred ccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHH
Q psy6208 88 IGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANE 143 (197)
Q Consensus 88 i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~ 143 (197)
.+|.+..+++|.+.+... ...+-+.|+|+.|.|||+||+.+++.
T Consensus 130 ~VGRe~eLeeL~elL~~~------------d~~RVV~IvGmGGIGKTTLAk~Vy~d 173 (1221)
T 1vt4_I 130 NVSRLQPYLKLRQALLEL------------RPAKNVLIDGVLGSGKTWVALDVCLS 173 (1221)
T ss_dssp CCCCHHHHHHHHHHHHHC------------CSSCEEEECCSTTSSHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHhcc------------CCCeEEEEEcCCCccHHHHHHHHHHh
Confidence 389999999998887531 23456899999999999999999853
No 225
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.32 E-value=0.00013 Score=54.43 Aligned_cols=27 Identities=26% Similarity=0.470 Sum_probs=23.5
Q ss_pred CCCCceEEECCCCCcHHHHHHHHHHHh
Q psy6208 118 KPPRGILLYGPPGTGKTLIARAVANET 144 (197)
Q Consensus 118 ~~~~~ill~G~~GtGKT~la~ala~~~ 144 (197)
..+..+.|.||+|+||||+++.++..+
T Consensus 4 ~~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 445678999999999999999999876
No 226
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=97.32 E-value=5.7e-05 Score=56.66 Aligned_cols=26 Identities=15% Similarity=0.175 Sum_probs=23.1
Q ss_pred CCceEEECCCCCcHHHHHHHHHHHhC
Q psy6208 120 PRGILLYGPPGTGKTLIARAVANETG 145 (197)
Q Consensus 120 ~~~ill~G~~GtGKT~la~ala~~~~ 145 (197)
+..|+|.|++|+||||+++.+++.++
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~ 35 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLK 35 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 45689999999999999999998864
No 227
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=97.29 E-value=0.00024 Score=53.64 Aligned_cols=31 Identities=29% Similarity=0.302 Sum_probs=26.1
Q ss_pred CCceEEECCCCCcHHHHHHHHHHHhCCeEEEE
Q psy6208 120 PRGILLYGPPGTGKTLIARAVANETGAFFFLI 151 (197)
Q Consensus 120 ~~~ill~G~~GtGKT~la~ala~~~~~~~~~v 151 (197)
+..|.|.|++|+|||++++.++. +|.+++..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~-lg~~~id~ 34 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD-LGINVIDA 34 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH-TTCEEEEH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH-cCCEEEEc
Confidence 34689999999999999999988 88776654
No 228
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.27 E-value=0.00023 Score=52.45 Aligned_cols=34 Identities=26% Similarity=0.421 Sum_probs=25.7
Q ss_pred ceEEECCCCCcHHHHHHHHHHHhCCeEEEEechhh
Q psy6208 122 GILLYGPPGTGKTLIARAVANETGAFFFLINGPEI 156 (197)
Q Consensus 122 ~ill~G~~GtGKT~la~ala~~~~~~~~~v~~~~~ 156 (197)
.+.|.||+|+||||+++.++...+. .++++...+
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~~~~g-~~~i~~d~~ 37 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAAQLDN-SAYIEGDII 37 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSS-EEEEEHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhcccCC-eEEEcccch
Confidence 4789999999999999999986643 244554443
No 229
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.27 E-value=0.0002 Score=53.36 Aligned_cols=26 Identities=27% Similarity=0.483 Sum_probs=22.6
Q ss_pred CCCceEEECCCCCcHHHHHHHHHHHh
Q psy6208 119 PPRGILLYGPPGTGKTLIARAVANET 144 (197)
Q Consensus 119 ~~~~ill~G~~GtGKT~la~ala~~~ 144 (197)
.+.-+.|.||+|+||||+++.++...
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 44568899999999999999999875
No 230
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=97.27 E-value=0.00044 Score=51.60 Aligned_cols=23 Identities=35% Similarity=0.638 Sum_probs=19.6
Q ss_pred CceEEECCCCCcHHHHHHHHHHH
Q psy6208 121 RGILLYGPPGTGKTLIARAVANE 143 (197)
Q Consensus 121 ~~ill~G~~GtGKT~la~ala~~ 143 (197)
..+++.+|+|+|||.++...+..
T Consensus 49 ~~~li~~~tGsGKT~~~~~~~~~ 71 (216)
T 3b6e_A 49 KNIIICLPTGSGKTRVAVYIAKD 71 (216)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHH
T ss_pred CCEEEEcCCCCCHHHHHHHHHHH
Confidence 47999999999999988877654
No 231
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=97.27 E-value=0.00017 Score=58.61 Aligned_cols=33 Identities=24% Similarity=0.282 Sum_probs=27.7
Q ss_pred CceEEECCCCCcHHHHHHHHHHHhCCeEEEEec
Q psy6208 121 RGILLYGPPGTGKTLIARAVANETGAFFFLING 153 (197)
Q Consensus 121 ~~ill~G~~GtGKT~la~ala~~~~~~~~~v~~ 153 (197)
..|+|.||+|+|||+++..++..++..++..+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~~~iis~Ds 40 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFNGEIISGDS 40 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTEEEEECCS
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcCCceecccc
Confidence 358899999999999999999999866655543
No 232
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.27 E-value=0.00017 Score=54.37 Aligned_cols=27 Identities=33% Similarity=0.453 Sum_probs=23.2
Q ss_pred CCCceEEECCCCCcHHHHHHHHHHHhC
Q psy6208 119 PPRGILLYGPPGTGKTLIARAVANETG 145 (197)
Q Consensus 119 ~~~~ill~G~~GtGKT~la~ala~~~~ 145 (197)
.+.-+.|.||+|+|||++++.++....
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 345688999999999999999998763
No 233
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.25 E-value=0.00012 Score=54.81 Aligned_cols=32 Identities=19% Similarity=0.172 Sum_probs=25.5
Q ss_pred CCCceEEECCCCCcHHHHHHHHHHHh-CCeEEE
Q psy6208 119 PPRGILLYGPPGTGKTLIARAVANET-GAFFFL 150 (197)
Q Consensus 119 ~~~~ill~G~~GtGKT~la~ala~~~-~~~~~~ 150 (197)
.+.-+.|.|++|+|||++++.++..+ +..++.
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~~~~~~~i~ 52 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKHLPNCSVIS 52 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTTSTTEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCcEEEe
Confidence 34457899999999999999999877 554443
No 234
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=97.25 E-value=0.00036 Score=58.29 Aligned_cols=30 Identities=23% Similarity=0.407 Sum_probs=25.3
Q ss_pred CCceEEECCCCCcHHHHHHHHHHHhCCeEE
Q psy6208 120 PRGILLYGPPGTGKTLIARAVANETGAFFF 149 (197)
Q Consensus 120 ~~~ill~G~~GtGKT~la~ala~~~~~~~~ 149 (197)
+.-|+|.|+||+||||+++.++..++..++
T Consensus 258 ~~lIil~G~pGSGKSTla~~L~~~~~~~~i 287 (416)
T 3zvl_A 258 PEVVVAVGFPGAGKSTFIQEHLVSAGYVHV 287 (416)
T ss_dssp CCEEEEESCTTSSHHHHHHHHTGGGTCEEC
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhcCcEEE
Confidence 345889999999999999999998876544
No 235
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.25 E-value=0.0014 Score=52.76 Aligned_cols=36 Identities=28% Similarity=0.267 Sum_probs=28.5
Q ss_pred CCCCceEEECCCCCcHHHHHHHHHHHh---CCeEEEEec
Q psy6208 118 KPPRGILLYGPPGTGKTLIARAVANET---GAFFFLING 153 (197)
Q Consensus 118 ~~~~~ill~G~~GtGKT~la~ala~~~---~~~~~~v~~ 153 (197)
..+..+++.|++|+|||+++..+|..+ +..+..+++
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~ 141 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAA 141 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 345568899999999999999998765 666766654
No 236
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.23 E-value=0.00092 Score=54.13 Aligned_cols=35 Identities=29% Similarity=0.337 Sum_probs=26.5
Q ss_pred CCCCceEEECCCCCcHHHHHHHHHHHh---CCeEEEEe
Q psy6208 118 KPPRGILLYGPPGTGKTLIARAVANET---GAFFFLIN 152 (197)
Q Consensus 118 ~~~~~ill~G~~GtGKT~la~ala~~~---~~~~~~v~ 152 (197)
.++.-+.|.||+|+||||+++.++..+ +..+....
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g 164 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAA 164 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEe
Confidence 345568999999999999999998765 44444443
No 237
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=97.23 E-value=0.00032 Score=53.81 Aligned_cols=33 Identities=24% Similarity=0.438 Sum_probs=27.9
Q ss_pred CCCCceEEECCCCCcHHHHHHHHHHHhCCeEEE
Q psy6208 118 KPPRGILLYGPPGTGKTLIARAVANETGAFFFL 150 (197)
Q Consensus 118 ~~~~~ill~G~~GtGKT~la~ala~~~~~~~~~ 150 (197)
..+..|.|.|++|+|||++++.++..+|.+++.
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~lg~~~~d 46 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKDFGFTYLD 46 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHHHCCEEEE
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHcCCceec
Confidence 345568999999999999999999999876654
No 238
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=97.23 E-value=0.00034 Score=52.77 Aligned_cols=31 Identities=35% Similarity=0.500 Sum_probs=27.1
Q ss_pred CceEEECCCCCcHHHHHHHHHHHhCCeEEEE
Q psy6208 121 RGILLYGPPGTGKTLIARAVANETGAFFFLI 151 (197)
Q Consensus 121 ~~ill~G~~GtGKT~la~ala~~~~~~~~~v 151 (197)
..|.|.|++|+|||++++.++..++.+++..
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~g~~~~~~ 34 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASELSMIYVDT 34 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTTCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCceecC
Confidence 4689999999999999999999998776554
No 239
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=97.22 E-value=0.00015 Score=54.65 Aligned_cols=32 Identities=22% Similarity=0.307 Sum_probs=26.0
Q ss_pred CCceEEECCCCCcHHHHHHHHHHHhCCeEEEEe
Q psy6208 120 PRGILLYGPPGTGKTLIARAVANETGAFFFLIN 152 (197)
Q Consensus 120 ~~~ill~G~~GtGKT~la~ala~~~~~~~~~v~ 152 (197)
..+++|.||+|+|||+||..++...+ .++..+
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g~-~iIsdD 65 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRGH-RLIADD 65 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTTC-EEEESS
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhCC-eEEecc
Confidence 45799999999999999999998865 444433
No 240
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.21 E-value=0.0011 Score=49.48 Aligned_cols=35 Identities=17% Similarity=0.163 Sum_probs=27.4
Q ss_pred CCCceEEECCCCCcHHHHHHHHHHHh---CCeEEEEec
Q psy6208 119 PPRGILLYGPPGTGKTLIARAVANET---GAFFFLING 153 (197)
Q Consensus 119 ~~~~ill~G~~GtGKT~la~ala~~~---~~~~~~v~~ 153 (197)
.+.-+.|.|++|+|||++++.++..+ +.++...+.
T Consensus 21 ~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~ 58 (201)
T 1rz3_A 21 GRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHM 58 (201)
T ss_dssp SSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEecc
Confidence 34458899999999999999999875 556665543
No 241
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=97.21 E-value=0.00063 Score=57.15 Aligned_cols=35 Identities=37% Similarity=0.345 Sum_probs=28.8
Q ss_pred CCceEEECCCCCcHHHHHHHHHHHh---CCeEEEEech
Q psy6208 120 PRGILLYGPPGTGKTLIARAVANET---GAFFFLINGP 154 (197)
Q Consensus 120 ~~~ill~G~~GtGKT~la~ala~~~---~~~~~~v~~~ 154 (197)
+..|++.|++|+||||++..+|..+ |.++..+++.
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D 136 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAAD 136 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecc
Confidence 4578999999999999999998766 5677777654
No 242
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=97.20 E-value=0.00022 Score=53.40 Aligned_cols=26 Identities=23% Similarity=0.236 Sum_probs=23.1
Q ss_pred CCCceEEECCCCCcHHHHHHHHHHHh
Q psy6208 119 PPRGILLYGPPGTGKTLIARAVANET 144 (197)
Q Consensus 119 ~~~~ill~G~~GtGKT~la~ala~~~ 144 (197)
.+..|+|.|++|+||||+++.+++.+
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 34568999999999999999999876
No 243
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=97.19 E-value=0.0003 Score=50.95 Aligned_cols=28 Identities=25% Similarity=0.368 Sum_probs=24.0
Q ss_pred CCCCCceEEECCCCCcHHHHHHHHHHHh
Q psy6208 117 VKPPRGILLYGPPGTGKTLIARAVANET 144 (197)
Q Consensus 117 ~~~~~~ill~G~~GtGKT~la~ala~~~ 144 (197)
+.+...+.|.||.|+|||+|++.++..+
T Consensus 30 i~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 30 TEKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp CSSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 4555568899999999999999999876
No 244
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.18 E-value=0.00024 Score=53.17 Aligned_cols=26 Identities=35% Similarity=0.709 Sum_probs=21.5
Q ss_pred CCCceEEECCCCCcHHHHHHHHHHHh
Q psy6208 119 PPRGILLYGPPGTGKTLIARAVANET 144 (197)
Q Consensus 119 ~~~~ill~G~~GtGKT~la~ala~~~ 144 (197)
++..+.|.||+|+|||||++.++...
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp --CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 34568999999999999999998754
No 245
>2jv2_A Putative uncharacterized protein PH1500; AAA ATPase NC-domain-like, unknown function; NMR {Pyrococcus horikoshii}
Probab=97.18 E-value=0.0018 Score=41.52 Aligned_cols=56 Identities=20% Similarity=0.149 Sum_probs=48.9
Q ss_pred hhhHHHHhHHHhhhcCcccccCCEEEEecCcceEEEEEEEecCCCeEEEcCceEEEEcC
Q psy6208 10 SNLFEVYLKPYFLEAYRPVHKDDLFIVRGGMRAVEFKIVDTDPAPYCIVAADTVIHCEG 68 (197)
Q Consensus 10 ~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 68 (197)
.+-+..|++++|.+ +++..||.+.+...+..+.|+|++++|. .+.+++.|.+.+..
T Consensus 26 ~~~~~~~lk~~L~g--rPV~~GD~I~i~~~G~~i~F~Vv~t~P~-~V~Vt~~T~I~i~~ 81 (83)
T 2jv2_A 26 PPDFVDVIRIKLQG--KTVRTGDVIGISILGKEVKFKVVQAYPS-PLRVEDRTKITLVT 81 (83)
T ss_dssp CHHHHHHHHHHHTT--SEECTTCEEEEEETTEEEEEEEEEEESS-SEECCTTSEEEECC
T ss_pred CccHHHHHHHHHCC--CCccCCCEEEEeeCCCEEEEEEEEecCc-cEEECCCcEEEEEe
Confidence 34567899999997 6999999999977779999999999999 99999999998854
No 246
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=97.17 E-value=0.00024 Score=59.07 Aligned_cols=33 Identities=18% Similarity=0.305 Sum_probs=27.7
Q ss_pred CceEEECCCCCcHHHHHHHHHHHhCCeEEEEec
Q psy6208 121 RGILLYGPPGTGKTLIARAVANETGAFFFLING 153 (197)
Q Consensus 121 ~~ill~G~~GtGKT~la~ala~~~~~~~~~v~~ 153 (197)
.-|+|.||+|+|||+|+..++..++..++..+.
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~~~iis~Ds 35 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFNGEVINSDS 35 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHTEEEEECCT
T ss_pred cEEEEECcchhhHHHHHHHHHHHCCCeEeecCc
Confidence 357899999999999999999999876665543
No 247
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=97.16 E-value=0.00025 Score=58.15 Aligned_cols=72 Identities=24% Similarity=0.353 Sum_probs=45.2
Q ss_pred CCCCceEEECCCCCcHHHHHHHHHHHhC--CeEEEEec-hhhhh-----h--ccC-c-------cHHHHHHHHHHHhcCC
Q psy6208 118 KPPRGILLYGPPGTGKTLIARAVANETG--AFFFLING-PEIMS-----K--LAG-E-------SESNLRKAFEEADKNS 179 (197)
Q Consensus 118 ~~~~~ill~G~~GtGKT~la~ala~~~~--~~~~~v~~-~~~~~-----~--~~~-~-------~~~~~~~~~~~a~~~~ 179 (197)
.+...++|.||+|+||||++++++.... ...+.++. .++.. . +.. . .....+..+..+.+..
T Consensus 173 ~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~~~~~~~t~~~~i~~~l~~~ 252 (361)
T 2gza_A 173 QLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVPELFLPDHPNHVHLFYPSEAKEEENAPVTAATLLRSCLRMK 252 (361)
T ss_dssp HTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESSSCCCCTTCSSEEEEECC----------CCHHHHHHHHTTSC
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCccccCccccCCEEEEeecCccccccccccCHHHHHHHHHhcC
Confidence 4566899999999999999999988763 23444442 11110 0 111 0 1112345566666678
Q ss_pred CeEEEEcccC
Q psy6208 180 PSIIFIDELD 189 (197)
Q Consensus 180 ~~vl~lDeid 189 (197)
|+.++++|+.
T Consensus 253 pd~~l~~e~r 262 (361)
T 2gza_A 253 PTRILLAELR 262 (361)
T ss_dssp CSEEEESCCC
T ss_pred CCEEEEcCch
Confidence 9999999975
No 248
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=97.15 E-value=0.00068 Score=51.52 Aligned_cols=69 Identities=16% Similarity=0.163 Sum_probs=38.8
Q ss_pred eEEECCCCCcHHHHHHHHHHHh---CCeEEEEechhhhhhcc-CccHHH------------HHHHHHHHhcCCCeEEEEc
Q psy6208 123 ILLYGPPGTGKTLIARAVANET---GAFFFLINGPEIMSKLA-GESESN------------LRKAFEEADKNSPSIIFID 186 (197)
Q Consensus 123 ill~G~~GtGKT~la~ala~~~---~~~~~~v~~~~~~~~~~-~~~~~~------------~~~~~~~a~~~~~~vl~lD 186 (197)
.+++|+.|+|||+.+..++... +..++.+... +-+.+. +..... ..++++.+. ...++|+||
T Consensus 31 ~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k~~-~d~R~ge~~i~s~~g~~~~a~~~~~~~~~~~~~~-~~~dvViID 108 (214)
T 2j9r_A 31 EVICGSMFSGKSEELIRRVRRTQFAKQHAIVFKPC-IDNRYSEEDVVSHNGLKVKAVPVSASKDIFKHIT-EEMDVIAID 108 (214)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEECC------------------CCEEECSSGGGGGGGCC-SSCCEEEEC
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEec-cCCcchHHHHHhhcCCeeEEeecCCHHHHHHHHh-cCCCEEEEE
Confidence 5689999999999888776654 6666666522 111110 000000 012222222 246899999
Q ss_pred ccCccCc
Q psy6208 187 ELDAIAP 193 (197)
Q Consensus 187 eid~l~~ 193 (197)
|++.|.+
T Consensus 109 EaQF~~~ 115 (214)
T 2j9r_A 109 EVQFFDG 115 (214)
T ss_dssp CGGGSCT
T ss_pred CcccCCH
Confidence 9999865
No 249
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=97.15 E-value=0.00028 Score=55.92 Aligned_cols=34 Identities=35% Similarity=0.529 Sum_probs=26.0
Q ss_pred CceEEECCCCCcHHHHHHHHHHHh-CCeEEEEechhh
Q psy6208 121 RGILLYGPPGTGKTLIARAVANET-GAFFFLINGPEI 156 (197)
Q Consensus 121 ~~ill~G~~GtGKT~la~ala~~~-~~~~~~v~~~~~ 156 (197)
..|+|.|+||+|||++++.++..+ +.. .++...+
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~~~~~~--~i~~D~~ 37 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAKNPGFY--NINRDDY 37 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTTEE--EECHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhCCCcE--EecccHH
Confidence 358999999999999999999874 544 4444443
No 250
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.14 E-value=0.00028 Score=52.10 Aligned_cols=23 Identities=35% Similarity=0.632 Sum_probs=20.7
Q ss_pred ceEEECCCCCcHHHHHHHHHHHh
Q psy6208 122 GILLYGPPGTGKTLIARAVANET 144 (197)
Q Consensus 122 ~ill~G~~GtGKT~la~ala~~~ 144 (197)
.+.|.||+|+||||+++.++...
T Consensus 3 ii~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 3 PIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 47899999999999999998764
No 251
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=97.14 E-value=0.00029 Score=53.50 Aligned_cols=28 Identities=25% Similarity=0.490 Sum_probs=23.1
Q ss_pred CCCCCceEEECCCCCcHHHHHHHHHHHh
Q psy6208 117 VKPPRGILLYGPPGTGKTLIARAVANET 144 (197)
Q Consensus 117 ~~~~~~ill~G~~GtGKT~la~ala~~~ 144 (197)
+..+..+.|.||+|+|||+|++.++...
T Consensus 20 i~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 20 MNNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp --CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3456678999999999999999998865
No 252
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=97.14 E-value=0.0017 Score=55.50 Aligned_cols=34 Identities=29% Similarity=0.282 Sum_probs=27.8
Q ss_pred CCceEEECCCCCcHHHHHHHHHHHh---CCeEEEEec
Q psy6208 120 PRGILLYGPPGTGKTLIARAVANET---GAFFFLING 153 (197)
Q Consensus 120 ~~~ill~G~~GtGKT~la~ala~~~---~~~~~~v~~ 153 (197)
+..|+|.|++|+||||++..++..+ +..+..+++
T Consensus 101 ~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~ 137 (504)
T 2j37_W 101 QNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICA 137 (504)
T ss_dssp -EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEec
Confidence 4568999999999999999998765 667777765
No 253
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=97.12 E-value=0.00027 Score=55.91 Aligned_cols=31 Identities=26% Similarity=0.351 Sum_probs=25.7
Q ss_pred CCceEEECCCCCcHHHHHHHHHHHhCCeEEEE
Q psy6208 120 PRGILLYGPPGTGKTLIARAVANETGAFFFLI 151 (197)
Q Consensus 120 ~~~ill~G~~GtGKT~la~ala~~~~~~~~~v 151 (197)
+..|.|.|++|+|||++++.++ .+|.+++..
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La-~lg~~~id~ 105 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLK-NLGAYIIDS 105 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHH-HHTCEEEEH
T ss_pred CEEEEEECCCCCCHHHHHHHHH-HCCCcEEeh
Confidence 3458999999999999999999 678776544
No 254
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=97.12 E-value=0.00077 Score=57.91 Aligned_cols=75 Identities=28% Similarity=0.319 Sum_probs=46.8
Q ss_pred CCCCCceEEECCCCCcHHHHHHHHHHHh---CCeEEEEechh----hhhh---------------cc---------CccH
Q psy6208 117 VKPPRGILLYGPPGTGKTLIARAVANET---GAFFFLINGPE----IMSK---------------LA---------GESE 165 (197)
Q Consensus 117 ~~~~~~ill~G~~GtGKT~la~ala~~~---~~~~~~v~~~~----~~~~---------------~~---------~~~~ 165 (197)
+.+...++|.|++|+|||+|++.++... +.+++++...+ +... .. -...
T Consensus 278 i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ee~~~~l~~~~~~~g~~~~~~~~~g~~~~~~~~p~~LS~g 357 (525)
T 1tf7_A 278 FFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEESRAQLLRNAYSWGMDFEEMERQNLLKIVCAYPESAGLE 357 (525)
T ss_dssp EESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSSCHHHHHHHHHTTSCCHHHHHHTTSEEECCCCGGGSCHH
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCCHHHHHhCCCEEEEEeccccCCHH
Confidence 4566678999999999999999998654 44555554321 1100 00 0122
Q ss_pred HHHHHHHHHHhcCCCeEEEEcccCcc
Q psy6208 166 SNLRKAFEEADKNSPSIIFIDELDAI 191 (197)
Q Consensus 166 ~~~~~~~~~a~~~~~~vl~lDeid~l 191 (197)
...+.++..+....|.+|+||=+..|
T Consensus 358 ~~q~~~~a~~l~~~p~llilDp~~~L 383 (525)
T 1tf7_A 358 DHLQIIKSEINDFKPARIAIDSLSAL 383 (525)
T ss_dssp HHHHHHHHHHHTTCCSEEEEECHHHH
T ss_pred HHHHHHHHHHHhhCCCEEEEcChHHH
Confidence 33445556666678999999944333
No 255
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.12 E-value=0.00028 Score=53.01 Aligned_cols=27 Identities=26% Similarity=0.479 Sum_probs=23.3
Q ss_pred CCCceEEECCCCCcHHHHHHHHHHHhC
Q psy6208 119 PPRGILLYGPPGTGKTLIARAVANETG 145 (197)
Q Consensus 119 ~~~~ill~G~~GtGKT~la~ala~~~~ 145 (197)
.+.-+.|.||+|+|||||++.|+..+.
T Consensus 21 ~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 445688999999999999999998774
No 256
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.09 E-value=0.0004 Score=52.18 Aligned_cols=27 Identities=22% Similarity=0.473 Sum_probs=23.1
Q ss_pred CCCceEEECCCCCcHHHHHHHHHHHhC
Q psy6208 119 PPRGILLYGPPGTGKTLIARAVANETG 145 (197)
Q Consensus 119 ~~~~ill~G~~GtGKT~la~ala~~~~ 145 (197)
.+..+.|.||+|+|||+|+++++....
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 455689999999999999999987653
No 257
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=97.09 E-value=0.00032 Score=52.58 Aligned_cols=26 Identities=38% Similarity=0.491 Sum_probs=23.2
Q ss_pred CCceEEECCCCCcHHHHHHHHHHHhC
Q psy6208 120 PRGILLYGPPGTGKTLIARAVANETG 145 (197)
Q Consensus 120 ~~~ill~G~~GtGKT~la~ala~~~~ 145 (197)
+.-+.|.||+|+||||+++.++..++
T Consensus 6 ~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 44578999999999999999999876
No 258
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=97.09 E-value=0.00028 Score=52.25 Aligned_cols=32 Identities=25% Similarity=0.365 Sum_probs=28.1
Q ss_pred eEEECCCCCcHHHHHHHHHHHhCCeEEEEechh
Q psy6208 123 ILLYGPPGTGKTLIARAVANETGAFFFLINGPE 155 (197)
Q Consensus 123 ill~G~~GtGKT~la~ala~~~~~~~~~v~~~~ 155 (197)
++++|++|+|||++|..++.. +.+++|+....
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~~~~~yiaT~~ 33 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-APQVLYIATSQ 33 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-CSSEEEEECCC
T ss_pred EEEECCCCCcHHHHHHHHHhc-CCCeEEEecCC
Confidence 689999999999999999987 77888887644
No 259
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=97.07 E-value=0.00056 Score=54.12 Aligned_cols=37 Identities=24% Similarity=0.233 Sum_probs=29.0
Q ss_pred CCCCCCceEEECCCCCcHHHHHHHHHHHh----CCeEEEEe
Q psy6208 116 GVKPPRGILLYGPPGTGKTLIARAVANET----GAFFFLIN 152 (197)
Q Consensus 116 ~~~~~~~ill~G~~GtGKT~la~ala~~~----~~~~~~v~ 152 (197)
++.++.-++|.||||+|||+|++.++... |.++++++
T Consensus 31 ~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~ 71 (296)
T 1cr0_A 31 GARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAM 71 (296)
T ss_dssp SBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEE
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEe
Confidence 35666778999999999999999998764 44666654
No 260
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=97.05 E-value=0.002 Score=55.33 Aligned_cols=37 Identities=30% Similarity=0.399 Sum_probs=28.8
Q ss_pred CCceEEECCCCCcHHHHHHHHHHHh---CCeEEEEechhh
Q psy6208 120 PRGILLYGPPGTGKTLIARAVANET---GAFFFLINGPEI 156 (197)
Q Consensus 120 ~~~ill~G~~GtGKT~la~ala~~~---~~~~~~v~~~~~ 156 (197)
+.-|++.|.||+|||++++.++..+ +.....++..++
T Consensus 35 ~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~~ 74 (520)
T 2axn_A 35 PTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEY 74 (520)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccHH
Confidence 4458999999999999999999887 445555665544
No 261
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=97.03 E-value=0.00042 Score=52.00 Aligned_cols=28 Identities=25% Similarity=0.478 Sum_probs=23.2
Q ss_pred CCCCCceEEECCCCCcHHHHHHHHHHHh
Q psy6208 117 VKPPRGILLYGPPGTGKTLIARAVANET 144 (197)
Q Consensus 117 ~~~~~~ill~G~~GtGKT~la~ala~~~ 144 (197)
+..+..+.|.||+|+|||||+++++...
T Consensus 17 i~~Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 17 AAVGRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp --CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3556678899999999999999998876
No 262
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=97.03 E-value=0.00048 Score=51.79 Aligned_cols=30 Identities=20% Similarity=0.212 Sum_probs=27.1
Q ss_pred CceEEECCCCCcHHHHHHHHHHHhCCeEEE
Q psy6208 121 RGILLYGPPGTGKTLIARAVANETGAFFFL 150 (197)
Q Consensus 121 ~~ill~G~~GtGKT~la~ala~~~~~~~~~ 150 (197)
.-|.|.|++|||||++++.+|..+|.+++-
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~lg~~~~D 36 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEHYNIPLYS 36 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHTTCCEEC
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHhCcCEEC
Confidence 358899999999999999999999998773
No 263
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=97.02 E-value=0.00052 Score=55.03 Aligned_cols=33 Identities=24% Similarity=0.546 Sum_probs=27.5
Q ss_pred CCCCCCceEEECCCCCcHHHHHHHHHHHhCCeE
Q psy6208 116 GVKPPRGILLYGPPGTGKTLIARAVANETGAFF 148 (197)
Q Consensus 116 ~~~~~~~ill~G~~GtGKT~la~ala~~~~~~~ 148 (197)
.+.++..+.|.||+|+|||+|++.|+......+
T Consensus 122 ~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~~G~I 154 (305)
T 2v9p_A 122 GIPKKNCLAFIGPPNTGKSMLCNSLIHFLGGSV 154 (305)
T ss_dssp TCTTCSEEEEECSSSSSHHHHHHHHHHHHTCEE
T ss_pred EecCCCEEEEECCCCCcHHHHHHHHhhhcCceE
Confidence 366777899999999999999999998774444
No 264
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=97.00 E-value=0.00048 Score=52.50 Aligned_cols=28 Identities=18% Similarity=0.307 Sum_probs=23.4
Q ss_pred CCCCceEEECCCCCcHHHHHHHHHHHhC
Q psy6208 118 KPPRGILLYGPPGTGKTLIARAVANETG 145 (197)
Q Consensus 118 ~~~~~ill~G~~GtGKT~la~ala~~~~ 145 (197)
..+.-+.|.||+|+|||||+++++....
T Consensus 14 ~~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 14 AQGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 4556688999999999999999988754
No 265
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.98 E-value=0.00091 Score=53.72 Aligned_cols=38 Identities=26% Similarity=0.228 Sum_probs=30.8
Q ss_pred CCCCCCceEEECCCCCcHHHHHHHHHHHh---CCeEEEEec
Q psy6208 116 GVKPPRGILLYGPPGTGKTLIARAVANET---GAFFFLING 153 (197)
Q Consensus 116 ~~~~~~~ill~G~~GtGKT~la~ala~~~---~~~~~~v~~ 153 (197)
|+.++.-++|.|+||+|||+++..++... +.++++++.
T Consensus 64 Gl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~sl 104 (315)
T 3bh0_A 64 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSL 104 (315)
T ss_dssp SBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEES
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEEC
Confidence 46667779999999999999999998654 567888774
No 266
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=96.97 E-value=0.0024 Score=57.48 Aligned_cols=63 Identities=17% Similarity=0.162 Sum_probs=37.9
Q ss_pred hcCCCCcccccCcHHHHHHHHHHHHhcccC--hhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHH
Q psy6208 79 ASNAVGYDDIGGCRKQLAQIKEMVELPLRH--PSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANE 143 (197)
Q Consensus 79 ~~~~~~~~~i~g~~~~~~~l~~~v~~~~~~--~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~ 143 (197)
..+...|++++-.....+.+.+.-..|... ...... +.....+++.||+|+|||+++..+...
T Consensus 68 ~~~~~~f~~~~l~~~~~~~l~~r~~lP~~~q~~~i~~~--l~~~~~vii~gpTGSGKTtllp~ll~~ 132 (773)
T 2xau_A 68 DGKINPFTGREFTPKYVDILKIRRELPVHAQRDEFLKL--YQNNQIMVFVGETGSGKTTQIPQFVLF 132 (773)
T ss_dssp HSSBCTTTCSBCCHHHHHHHHHHTTSGGGGGHHHHHHH--HHHCSEEEEECCTTSSHHHHHHHHHHH
T ss_pred cCCCCCccccCCCHHHHHHHHHhhcCChHHHHHHHHHH--HhCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 344567888876666666655543333211 111111 223457999999999999977766543
No 267
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=96.96 E-value=0.0023 Score=53.68 Aligned_cols=74 Identities=16% Similarity=0.263 Sum_probs=47.0
Q ss_pred CCCceEEECCCCCcHHHHHHHHHHHh----CCeEEEEechhhhhh----------------ccC---cc-HHHHHHHHHH
Q psy6208 119 PPRGILLYGPPGTGKTLIARAVANET----GAFFFLINGPEIMSK----------------LAG---ES-ESNLRKAFEE 174 (197)
Q Consensus 119 ~~~~ill~G~~GtGKT~la~ala~~~----~~~~~~v~~~~~~~~----------------~~~---~~-~~~~~~~~~~ 174 (197)
.+..|++.|++|+|||+++..+|..+ |.++..+++...... +.. .. ...+...+..
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~~ 178 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKE 178 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHHH
Confidence 34568899999999999999988655 677887776421100 000 11 2222455565
Q ss_pred HhcCCCeEEEEcccCccC
Q psy6208 175 ADKNSPSIIFIDELDAIA 192 (197)
Q Consensus 175 a~~~~~~vl~lDeid~l~ 192 (197)
+.....+++|||=...+.
T Consensus 179 ~~~~~~D~VIIDTpG~l~ 196 (433)
T 2xxa_A 179 AKLKFYDVLLVDTAGRLH 196 (433)
T ss_dssp HHHTTCSEEEEECCCCCT
T ss_pred HHhCCCCEEEEECCCccc
Confidence 554457899999865543
No 268
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=96.95 E-value=0.00071 Score=59.33 Aligned_cols=37 Identities=27% Similarity=0.424 Sum_probs=31.9
Q ss_pred CCceEEECCCCCcHHHHHHHHHHHh---CCeEEEEechhh
Q psy6208 120 PRGILLYGPPGTGKTLIARAVANET---GAFFFLINGPEI 156 (197)
Q Consensus 120 ~~~ill~G~~GtGKT~la~ala~~~---~~~~~~v~~~~~ 156 (197)
+..|+|.|.+|+||||+++++++.+ +.+++.++...+
T Consensus 52 g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~i 91 (630)
T 1x6v_B 52 GCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNI 91 (630)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHHHH
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechHHh
Confidence 4458999999999999999999998 889988875444
No 269
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.95 E-value=0.0017 Score=51.95 Aligned_cols=34 Identities=26% Similarity=0.421 Sum_probs=26.1
Q ss_pred CCCCceEEECCCCCcHHHHHHHHHHHh---CCeEEEE
Q psy6208 118 KPPRGILLYGPPGTGKTLIARAVANET---GAFFFLI 151 (197)
Q Consensus 118 ~~~~~ill~G~~GtGKT~la~ala~~~---~~~~~~v 151 (197)
..+..+.|.||+|+||||+++.++..+ +..+...
T Consensus 98 ~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~ 134 (302)
T 3b9q_A 98 RKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMA 134 (302)
T ss_dssp SSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 345568899999999999999998765 3444443
No 270
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=96.95 E-value=0.00054 Score=52.84 Aligned_cols=29 Identities=21% Similarity=0.272 Sum_probs=24.3
Q ss_pred CCCCceEEECCCCCcHHHHHHHHHHHhCC
Q psy6208 118 KPPRGILLYGPPGTGKTLIARAVANETGA 146 (197)
Q Consensus 118 ~~~~~ill~G~~GtGKT~la~ala~~~~~ 146 (197)
..+.-+-|.||+|+||||+++.++..+|.
T Consensus 23 ~~g~iigI~G~~GsGKSTl~k~L~~~lG~ 51 (245)
T 2jeo_A 23 MRPFLIGVSGGTASGKSTVCEKIMELLGQ 51 (245)
T ss_dssp CCSEEEEEECSTTSSHHHHHHHHHHHHTG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhch
Confidence 34445789999999999999999998764
No 271
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=96.93 E-value=0.0017 Score=59.30 Aligned_cols=24 Identities=29% Similarity=0.407 Sum_probs=20.3
Q ss_pred CCCceEEECCCCCcHHHHHHHHHH
Q psy6208 119 PPRGILLYGPPGTGKTLIARAVAN 142 (197)
Q Consensus 119 ~~~~ill~G~~GtGKT~la~ala~ 142 (197)
.+..+.|.||.|+|||++++.++.
T Consensus 672 ~g~i~~ItGPNGaGKSTlLr~i~~ 695 (918)
T 3thx_B 672 SERVMIITGPNMGGKSSYIKQVAL 695 (918)
T ss_dssp SCCEEEEESCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCchHHHHHHHHH
Confidence 344589999999999999998864
No 272
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=96.93 E-value=0.0018 Score=51.60 Aligned_cols=73 Identities=23% Similarity=0.220 Sum_probs=45.8
Q ss_pred CCceEEECCCCCcHHHHHHHHHHHh---CCeEEEEechhhh-----------hh----c-cC---c-cHHHHHHHHHHHh
Q psy6208 120 PRGILLYGPPGTGKTLIARAVANET---GAFFFLINGPEIM-----------SK----L-AG---E-SESNLRKAFEEAD 176 (197)
Q Consensus 120 ~~~ill~G~~GtGKT~la~ala~~~---~~~~~~v~~~~~~-----------~~----~-~~---~-~~~~~~~~~~~a~ 176 (197)
+..+.+.|++|+|||+++..+|..+ +..+..+++.-.. .. . .+ . ....+...++.+.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~ 177 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFL 177 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence 4457889999999999999998765 6677776653110 00 0 00 1 1122344555555
Q ss_pred cCCCeEEEEcccCccC
Q psy6208 177 KNSPSIIFIDELDAIA 192 (197)
Q Consensus 177 ~~~~~vl~lDeid~l~ 192 (197)
....++++||=...+.
T Consensus 178 ~~~~D~ViIDTpg~~~ 193 (297)
T 1j8m_F 178 SEKMEIIIVDTAGRHG 193 (297)
T ss_dssp HTTCSEEEEECCCSCC
T ss_pred hCCCCEEEEeCCCCcc
Confidence 4567899999766554
No 273
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=96.92 E-value=0.00026 Score=51.66 Aligned_cols=22 Identities=27% Similarity=0.477 Sum_probs=18.7
Q ss_pred CCCCceEEECCCCCcHHHHHHH
Q psy6208 118 KPPRGILLYGPPGTGKTLIARA 139 (197)
Q Consensus 118 ~~~~~ill~G~~GtGKT~la~a 139 (197)
..+.-+.|.||+|+|||||+++
T Consensus 7 ~~gei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 7 PELSLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp ESSEEEEEECCTTSCHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHH
Confidence 3455689999999999999994
No 274
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.88 E-value=0.00049 Score=54.74 Aligned_cols=27 Identities=30% Similarity=0.455 Sum_probs=22.9
Q ss_pred CCCceEEECCCCCcHHHHHHHHHHHhC
Q psy6208 119 PPRGILLYGPPGTGKTLIARAVANETG 145 (197)
Q Consensus 119 ~~~~ill~G~~GtGKT~la~ala~~~~ 145 (197)
.+.-|.|.|++|+||||+++.++..++
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhh
Confidence 344578999999999999999988774
No 275
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=96.87 E-value=0.003 Score=50.27 Aligned_cols=72 Identities=28% Similarity=0.332 Sum_probs=44.4
Q ss_pred CCceEEECCCCCcHHHHHHHHHHHh---CCeEEEEechh--------h---hhh-----cc---CccHHH-HHHHHHHHh
Q psy6208 120 PRGILLYGPPGTGKTLIARAVANET---GAFFFLINGPE--------I---MSK-----LA---GESESN-LRKAFEEAD 176 (197)
Q Consensus 120 ~~~ill~G~~GtGKT~la~ala~~~---~~~~~~v~~~~--------~---~~~-----~~---~~~~~~-~~~~~~~a~ 176 (197)
+..+.+.|++|+|||+++..+|..+ +..+..+++.- + ... +. ...... .+..++.+.
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l~~~~ 177 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKAR 177 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHHHHHH
Confidence 4457788999999999999998765 55666665421 1 000 00 111112 244555554
Q ss_pred cCCCeEEEEcccCcc
Q psy6208 177 KNSPSIIFIDELDAI 191 (197)
Q Consensus 177 ~~~~~vl~lDeid~l 191 (197)
...+++|+||+-..+
T Consensus 178 ~~~~D~viiDtpp~~ 192 (295)
T 1ls1_A 178 LEARDLILVDTAGRL 192 (295)
T ss_dssp HHTCCEEEEECCCCS
T ss_pred hCCCCEEEEeCCCCc
Confidence 346899999997554
No 276
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.84 E-value=0.0022 Score=52.59 Aligned_cols=34 Identities=26% Similarity=0.391 Sum_probs=26.0
Q ss_pred CCCceEEECCCCCcHHHHHHHHHHHh---CCeEEEEe
Q psy6208 119 PPRGILLYGPPGTGKTLIARAVANET---GAFFFLIN 152 (197)
Q Consensus 119 ~~~~ill~G~~GtGKT~la~ala~~~---~~~~~~v~ 152 (197)
.+..+.|.||+|+||||+++.++..+ +..+....
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g 192 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAA 192 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEec
Confidence 44558899999999999999998865 44444443
No 277
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.83 E-value=0.0003 Score=52.70 Aligned_cols=24 Identities=21% Similarity=0.295 Sum_probs=21.7
Q ss_pred ceEEECCCCCcHHHHHHHHHHHhC
Q psy6208 122 GILLYGPPGTGKTLIARAVANETG 145 (197)
Q Consensus 122 ~ill~G~~GtGKT~la~ala~~~~ 145 (197)
-|.|.|++|+||||+++.++..++
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 378999999999999999999874
No 278
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=96.82 E-value=0.00035 Score=53.34 Aligned_cols=27 Identities=26% Similarity=0.384 Sum_probs=17.1
Q ss_pred CCCCceEEECCCCCcHHHHHHHHH-HHh
Q psy6208 118 KPPRGILLYGPPGTGKTLIARAVA-NET 144 (197)
Q Consensus 118 ~~~~~ill~G~~GtGKT~la~ala-~~~ 144 (197)
.++.-+.|.||+|+|||++++.++ ...
T Consensus 25 ~~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 25 SVGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp ECCCEEEEECSCC----CHHHHHHC---
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 345568899999999999999999 654
No 279
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=96.80 E-value=0.00073 Score=53.71 Aligned_cols=34 Identities=18% Similarity=0.195 Sum_probs=23.0
Q ss_pred CceEEECCCCCcHHHHHHHHHHHhC---CeEEEEech
Q psy6208 121 RGILLYGPPGTGKTLIARAVANETG---AFFFLINGP 154 (197)
Q Consensus 121 ~~ill~G~~GtGKT~la~ala~~~~---~~~~~v~~~ 154 (197)
.-|.|.|++|+||||+++.++..++ ..+..++..
T Consensus 6 ~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D 42 (290)
T 1a7j_A 6 PIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGD 42 (290)
T ss_dssp CEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGG
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecc
Confidence 3588999999999999999998765 334444433
No 280
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=96.79 E-value=0.0024 Score=49.01 Aligned_cols=69 Identities=19% Similarity=0.101 Sum_probs=37.7
Q ss_pred CceEEECCCCCcHHHHHHHHHHHh---CCeEEEEechhhhhhccCccHH------------HHHHHHHHHhcCCCeEEEE
Q psy6208 121 RGILLYGPPGTGKTLIARAVANET---GAFFFLINGPEIMSKLAGESES------------NLRKAFEEADKNSPSIIFI 185 (197)
Q Consensus 121 ~~ill~G~~GtGKT~la~ala~~~---~~~~~~v~~~~~~~~~~~~~~~------------~~~~~~~~a~~~~~~vl~l 185 (197)
.-.+++|+.|+|||+.+-..+... +..++.+... +-..+.+.... ...++++.+ ...++|+|
T Consensus 20 ~l~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~kp~-~D~Ryg~~i~sr~G~~~~a~~i~~~~di~~~~--~~~dvViI 96 (234)
T 2orv_A 20 QIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYA-KDTRYSSSFCTHDRNTMEALPACLLRDVAQEA--LGVAVIGI 96 (234)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEEET-TCCCC-----------CEEEEESSGGGGHHHH--TTCSEEEE
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeec-CCccchHHHHhhcCCeeEEEecCCHHHHHHHh--ccCCEEEE
Confidence 346889999999997665554433 5566655421 11111000000 001233333 34689999
Q ss_pred cccCccC
Q psy6208 186 DELDAIA 192 (197)
Q Consensus 186 Deid~l~ 192 (197)
||++.+.
T Consensus 97 DEaQF~~ 103 (234)
T 2orv_A 97 DEGQFFP 103 (234)
T ss_dssp SSGGGCT
T ss_pred Echhhhh
Confidence 9999884
No 281
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.78 E-value=0.001 Score=50.95 Aligned_cols=33 Identities=24% Similarity=0.248 Sum_probs=26.4
Q ss_pred CCCceEEECCCCCcHHHHHHHHHHHhC--CeEEEE
Q psy6208 119 PPRGILLYGPPGTGKTLIARAVANETG--AFFFLI 151 (197)
Q Consensus 119 ~~~~ill~G~~GtGKT~la~ala~~~~--~~~~~v 151 (197)
.+.-|.|.|++|+||||+++.++..++ ..++..
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~~~~~~~~~ 59 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLVKDYDVIMT 59 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEEE
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhcCCCceee
Confidence 345588999999999999999999885 455443
No 282
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=96.76 E-value=0.00065 Score=53.38 Aligned_cols=28 Identities=25% Similarity=0.332 Sum_probs=23.3
Q ss_pred CCCCCceEEECCCCCcHHHHHHHHHHHh
Q psy6208 117 VKPPRGILLYGPPGTGKTLIARAVANET 144 (197)
Q Consensus 117 ~~~~~~ill~G~~GtGKT~la~ala~~~ 144 (197)
+....-++|+||+|+|||+|+..++...
T Consensus 27 l~~G~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 27 MVAGTVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred ccCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4556678999999999999999998643
No 283
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=96.76 E-value=0.0036 Score=52.96 Aligned_cols=26 Identities=27% Similarity=0.468 Sum_probs=21.8
Q ss_pred CCCceEEECCCCCcHHHHHHHHHHHh
Q psy6208 119 PPRGILLYGPPGTGKTLIARAVANET 144 (197)
Q Consensus 119 ~~~~ill~G~~GtGKT~la~ala~~~ 144 (197)
....++|+|++|+|||+|+..++...
T Consensus 150 kGq~~~i~G~sGvGKTtL~~~l~~~~ 175 (473)
T 1sky_E 150 KGGKIGLFGGAGVGKTVLIQELIHNI 175 (473)
T ss_dssp TTCEEEEECCSSSCHHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCccHHHHHHHhhh
Confidence 34568999999999999999887654
No 284
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=96.73 E-value=0.00057 Score=52.66 Aligned_cols=28 Identities=21% Similarity=0.424 Sum_probs=23.3
Q ss_pred CCCCCceEEECCCCCcHHHHHHHHHHHh
Q psy6208 117 VKPPRGILLYGPPGTGKTLIARAVANET 144 (197)
Q Consensus 117 ~~~~~~ill~G~~GtGKT~la~ala~~~ 144 (197)
+.++..+.|.||+|+|||||++.++...
T Consensus 28 i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 28 IKEGEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 3556678999999999999999997543
No 285
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=96.73 E-value=0.0029 Score=57.95 Aligned_cols=21 Identities=24% Similarity=0.268 Sum_probs=18.7
Q ss_pred CceEEECCCCCcHHHHHHHHH
Q psy6208 121 RGILLYGPPGTGKTLIARAVA 141 (197)
Q Consensus 121 ~~ill~G~~GtGKT~la~ala 141 (197)
.-++|.||.|+|||++++.++
T Consensus 663 ~i~~ItGpNGsGKSTlLr~ia 683 (934)
T 3thx_A 663 MFHIITGPNMGGKSTYIRQTG 683 (934)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 448899999999999999984
No 286
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=96.73 E-value=0.0088 Score=48.68 Aligned_cols=35 Identities=20% Similarity=0.282 Sum_probs=26.9
Q ss_pred CCCceEEECCCCCcHHHHHHHHHHHh---CCeEEEEec
Q psy6208 119 PPRGILLYGPPGTGKTLIARAVANET---GAFFFLING 153 (197)
Q Consensus 119 ~~~~ill~G~~GtGKT~la~ala~~~---~~~~~~v~~ 153 (197)
....|.|.|+||+|||+++..++..+ +.++..+++
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~ 115 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAV 115 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEec
Confidence 34568999999999999999998775 555554443
No 287
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=96.72 E-value=0.0012 Score=50.45 Aligned_cols=30 Identities=23% Similarity=0.388 Sum_probs=26.7
Q ss_pred CceEEECCCCCcHHHHHHHHHHHhCCeEEE
Q psy6208 121 RGILLYGPPGTGKTLIARAVANETGAFFFL 150 (197)
Q Consensus 121 ~~ill~G~~GtGKT~la~ala~~~~~~~~~ 150 (197)
.-|.|.|++|||||++++.+|..++.+++.
T Consensus 15 ~iI~i~g~~gsGk~~i~~~la~~lg~~~~d 44 (223)
T 3hdt_A 15 LIITIEREYGSGGRIVGKKLAEELGIHFYD 44 (223)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHTCEEEC
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHcCCcEEc
Confidence 357899999999999999999999988754
No 288
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=96.72 E-value=0.0013 Score=50.49 Aligned_cols=31 Identities=26% Similarity=0.375 Sum_probs=26.5
Q ss_pred CceEEECCCCCcHHHHHHHHHHHhCCeEEEE
Q psy6208 121 RGILLYGPPGTGKTLIARAVANETGAFFFLI 151 (197)
Q Consensus 121 ~~ill~G~~GtGKT~la~ala~~~~~~~~~v 151 (197)
..+-|.|+||+|||++++.|++.++.+++..
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~~g~~~is~ 39 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEKFGIPQIST 39 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHTCCEECH
T ss_pred cceeeECCCCCCHHHHHHHHHHHhCCCeeec
Confidence 3477899999999999999999998776543
No 289
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=96.72 E-value=0.0013 Score=48.43 Aligned_cols=25 Identities=24% Similarity=0.454 Sum_probs=22.3
Q ss_pred CCCceEEECCCCCcHHHHHHHHHHH
Q psy6208 119 PPRGILLYGPPGTGKTLIARAVANE 143 (197)
Q Consensus 119 ~~~~ill~G~~GtGKT~la~ala~~ 143 (197)
...+++|.|++|+|||++|.++...
T Consensus 15 ~G~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 15 DKMGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHHHT
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHc
Confidence 3568999999999999999999875
No 290
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=96.70 E-value=0.0063 Score=49.30 Aligned_cols=28 Identities=21% Similarity=0.279 Sum_probs=23.4
Q ss_pred CCCCCceEEECCCCCcHHHHHHHHHHHh
Q psy6208 117 VKPPRGILLYGPPGTGKTLIARAVANET 144 (197)
Q Consensus 117 ~~~~~~ill~G~~GtGKT~la~ala~~~ 144 (197)
+.....+.|.|+||+|||+|+++++..+
T Consensus 52 ~~~g~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 52 TGRAIRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp CCCSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHhh
Confidence 3455568899999999999999998764
No 291
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=96.68 E-value=0.0013 Score=57.20 Aligned_cols=38 Identities=29% Similarity=0.270 Sum_probs=31.3
Q ss_pred CCceEEECCCCCcHHHHHHHHHHHhC----CeEEEEechhhh
Q psy6208 120 PRGILLYGPPGTGKTLIARAVANETG----AFFFLINGPEIM 157 (197)
Q Consensus 120 ~~~ill~G~~GtGKT~la~ala~~~~----~~~~~v~~~~~~ 157 (197)
+..|+|.|.+|+|||+++++++..++ .+++.++...+.
T Consensus 396 ~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~ir 437 (573)
T 1m8p_A 396 GFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDTVR 437 (573)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHHHH
T ss_pred ceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcHHHH
Confidence 34588999999999999999999885 778888765543
No 292
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=96.68 E-value=0.0015 Score=54.99 Aligned_cols=34 Identities=26% Similarity=0.296 Sum_probs=27.6
Q ss_pred CceEEECCCCCcHHHHHHHHHHHhCCeEEEEech
Q psy6208 121 RGILLYGPPGTGKTLIARAVANETGAFFFLINGP 154 (197)
Q Consensus 121 ~~ill~G~~GtGKT~la~ala~~~~~~~~~v~~~ 154 (197)
..+++.+|+|+|||..+-.++...+.+++.+...
T Consensus 109 ~~~ll~~~TGsGKT~~~l~~i~~~~~~~Lvl~P~ 142 (472)
T 2fwr_A 109 KRGCIVLPTGSGKTHVAMAAINELSTPTLIVVPT 142 (472)
T ss_dssp TEEEEECCTTSCHHHHHHHHHHHHCSCEEEEESS
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHcCCCEEEEECC
Confidence 3599999999999999988888777777666543
No 293
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=96.68 E-value=0.007 Score=45.42 Aligned_cols=25 Identities=24% Similarity=0.388 Sum_probs=22.0
Q ss_pred CCceEEECCCCCcHHHHHHHHHHHh
Q psy6208 120 PRGILLYGPPGTGKTLIARAVANET 144 (197)
Q Consensus 120 ~~~ill~G~~GtGKT~la~ala~~~ 144 (197)
...++|.|.+|+|||+|+..++...
T Consensus 38 ~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 38 VVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 4568899999999999999998775
No 294
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=96.67 E-value=0.0013 Score=48.92 Aligned_cols=23 Identities=35% Similarity=0.671 Sum_probs=20.8
Q ss_pred ceEEECCCCCcHHHHHHHHHHHh
Q psy6208 122 GILLYGPPGTGKTLIARAVANET 144 (197)
Q Consensus 122 ~ill~G~~GtGKT~la~ala~~~ 144 (197)
.+.|.||+|+||||+++.++..+
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 47899999999999999998765
No 295
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=96.65 E-value=0.0007 Score=52.19 Aligned_cols=28 Identities=21% Similarity=0.299 Sum_probs=23.7
Q ss_pred CCCCCceEEECCCCCcHHHHHHHHHHHh
Q psy6208 117 VKPPRGILLYGPPGTGKTLIARAVANET 144 (197)
Q Consensus 117 ~~~~~~ill~G~~GtGKT~la~ala~~~ 144 (197)
+.++..+.|.||+|+|||||++.++...
T Consensus 28 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 28 IPEGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3556678999999999999999998654
No 296
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=96.65 E-value=0.0013 Score=52.91 Aligned_cols=27 Identities=26% Similarity=0.202 Sum_probs=22.9
Q ss_pred CCCCceEEECCCCCcHHHHHHHHHHHh
Q psy6208 118 KPPRGILLYGPPGTGKTLIARAVANET 144 (197)
Q Consensus 118 ~~~~~ill~G~~GtGKT~la~ala~~~ 144 (197)
..+.-+.|.||+|+|||||++.|+..+
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll 114 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALL 114 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhc
Confidence 344557899999999999999998876
No 297
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.65 E-value=0.0022 Score=46.86 Aligned_cols=24 Identities=17% Similarity=0.116 Sum_probs=21.3
Q ss_pred CceEEECCCCCcHHHHHHHHHHHh
Q psy6208 121 RGILLYGPPGTGKTLIARAVANET 144 (197)
Q Consensus 121 ~~ill~G~~GtGKT~la~ala~~~ 144 (197)
..+.|.|++|+|||+++..++..+
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l 28 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAA 28 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhh
Confidence 358899999999999999998775
No 298
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.63 E-value=0.0015 Score=47.96 Aligned_cols=25 Identities=20% Similarity=0.165 Sum_probs=21.7
Q ss_pred CCceEEECCCCCcHHHHHHHHHHHh
Q psy6208 120 PRGILLYGPPGTGKTLIARAVANET 144 (197)
Q Consensus 120 ~~~ill~G~~GtGKT~la~ala~~~ 144 (197)
..-+.|.|++|+|||+++..+...+
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhc
Confidence 4568899999999999999998764
No 299
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=96.63 E-value=0.011 Score=49.56 Aligned_cols=73 Identities=27% Similarity=0.251 Sum_probs=44.8
Q ss_pred CCCceEEECCCCCcHHHHHHHHHHHh---CCeEEEEechhhh-------hh---------ccC---cc-HHHHHHHHHHH
Q psy6208 119 PPRGILLYGPPGTGKTLIARAVANET---GAFFFLINGPEIM-------SK---------LAG---ES-ESNLRKAFEEA 175 (197)
Q Consensus 119 ~~~~ill~G~~GtGKT~la~ala~~~---~~~~~~v~~~~~~-------~~---------~~~---~~-~~~~~~~~~~a 175 (197)
.+..+.+.|++|+|||+++..+|..+ +..+..+++.-.. .. +.. .. .......++.+
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~~~~~~gv~v~~~~~~~~p~~i~~~~l~~~ 176 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKA 176 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHHhcccCCccEEecCCCCCHHHHHHHHHHHH
Confidence 34557889999999999999998776 5566666542110 00 000 11 12224455665
Q ss_pred hcCCCeEEEEcccCcc
Q psy6208 176 DKNSPSIIFIDELDAI 191 (197)
Q Consensus 176 ~~~~~~vl~lDeid~l 191 (197)
.....++++||=...+
T Consensus 177 ~~~~~DvVIIDTaG~l 192 (425)
T 2ffh_A 177 RLEARDLILVDTAGRL 192 (425)
T ss_dssp HHTTCSEEEEECCCCS
T ss_pred HHCCCCEEEEcCCCcc
Confidence 4455789999966554
No 300
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=96.59 E-value=0.0024 Score=51.06 Aligned_cols=25 Identities=28% Similarity=0.331 Sum_probs=22.0
Q ss_pred CCceEEECCCCCcHHHHHHHHHHHh
Q psy6208 120 PRGILLYGPPGTGKTLIARAVANET 144 (197)
Q Consensus 120 ~~~ill~G~~GtGKT~la~ala~~~ 144 (197)
+..+.|.||+|+||||+++.++..+
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHH
Confidence 4568899999999999999999765
No 301
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=96.59 E-value=0.0024 Score=51.84 Aligned_cols=38 Identities=13% Similarity=0.121 Sum_probs=30.8
Q ss_pred CCCCCCceEEECCCCCcHHHHHHHHHHHh---CCeEEEEec
Q psy6208 116 GVKPPRGILLYGPPGTGKTLIARAVANET---GAFFFLING 153 (197)
Q Consensus 116 ~~~~~~~ill~G~~GtGKT~la~ala~~~---~~~~~~v~~ 153 (197)
|+.++.-++|.|+||+|||+++..+|... +.++.+++.
T Consensus 42 Gl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSl 82 (338)
T 4a1f_A 42 GFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSL 82 (338)
T ss_dssp SBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEES
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 45666679999999999999999997764 677877764
No 302
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=96.58 E-value=0.00062 Score=52.03 Aligned_cols=27 Identities=19% Similarity=0.251 Sum_probs=22.6
Q ss_pred CCCCceEEECCCCCcHHHHHHHHHHHh
Q psy6208 118 KPPRGILLYGPPGTGKTLIARAVANET 144 (197)
Q Consensus 118 ~~~~~ill~G~~GtGKT~la~ala~~~ 144 (197)
..+.-+.|.||+|+|||||++.++...
T Consensus 28 ~~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 28 KKGEFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp ETTCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 445568899999999999999997654
No 303
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=96.57 E-value=0.00087 Score=52.48 Aligned_cols=28 Identities=21% Similarity=0.349 Sum_probs=23.3
Q ss_pred CCCCCceEEECCCCCcHHHHHHHHHHHh
Q psy6208 117 VKPPRGILLYGPPGTGKTLIARAVANET 144 (197)
Q Consensus 117 ~~~~~~ill~G~~GtGKT~la~ala~~~ 144 (197)
+..+..+.|.||+|+|||||++.++...
T Consensus 29 i~~Ge~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 29 ARAGDVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3456668899999999999999997654
No 304
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=96.55 E-value=0.0011 Score=51.30 Aligned_cols=27 Identities=26% Similarity=0.455 Sum_probs=23.1
Q ss_pred CCCCCceEEECCCCCcHHHHHHHHHHHh
Q psy6208 117 VKPPRGILLYGPPGTGKTLIARAVANET 144 (197)
Q Consensus 117 ~~~~~~ill~G~~GtGKT~la~ala~~~ 144 (197)
+.. ..+.|.||+|+|||||++.++...
T Consensus 22 i~~-e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 22 MGR-DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp ECS-SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred ECC-EEEEEECCCCCCHHHHHHHHhCCC
Confidence 355 678899999999999999998754
No 305
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=96.54 E-value=0.00084 Score=51.90 Aligned_cols=28 Identities=29% Similarity=0.393 Sum_probs=23.3
Q ss_pred CCCCCceEEECCCCCcHHHHHHHHHHHh
Q psy6208 117 VKPPRGILLYGPPGTGKTLIARAVANET 144 (197)
Q Consensus 117 ~~~~~~ill~G~~GtGKT~la~ala~~~ 144 (197)
+.++..+.|.||+|+|||||++.++...
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 25 AQPNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp ECTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3556668999999999999999997643
No 306
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=96.52 E-value=0.0024 Score=53.77 Aligned_cols=38 Identities=26% Similarity=0.228 Sum_probs=31.2
Q ss_pred CCCCCCceEEECCCCCcHHHHHHHHHHHh---CCeEEEEec
Q psy6208 116 GVKPPRGILLYGPPGTGKTLIARAVANET---GAFFFLING 153 (197)
Q Consensus 116 ~~~~~~~ill~G~~GtGKT~la~ala~~~---~~~~~~v~~ 153 (197)
|+.++.-++|.|+||+|||+++..+|... +.++++++.
T Consensus 193 Gl~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSl 233 (444)
T 3bgw_A 193 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSL 233 (444)
T ss_dssp SBCSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECS
T ss_pred CCCCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEEC
Confidence 46666679999999999999999887654 678888874
No 307
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=96.52 E-value=0.0018 Score=47.21 Aligned_cols=23 Identities=26% Similarity=0.281 Sum_probs=20.5
Q ss_pred ceEEECCCCCcHHHHHHHHHHHh
Q psy6208 122 GILLYGPPGTGKTLIARAVANET 144 (197)
Q Consensus 122 ~ill~G~~GtGKT~la~ala~~~ 144 (197)
-.+|+||+|+|||++++||+-.+
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l 50 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVL 50 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHT
T ss_pred cEEEECCCCCCHHHHHHHHHHHH
Confidence 56899999999999999998754
No 308
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=96.52 E-value=0.0012 Score=51.81 Aligned_cols=27 Identities=30% Similarity=0.576 Sum_probs=23.2
Q ss_pred CCCCCceEEECCCCCcHHHHHHHHHHH
Q psy6208 117 VKPPRGILLYGPPGTGKTLIARAVANE 143 (197)
Q Consensus 117 ~~~~~~ill~G~~GtGKT~la~ala~~ 143 (197)
+..+..+.|.||+|+|||||++.++..
T Consensus 43 i~~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 43 VHPGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 355667899999999999999999875
No 309
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=96.52 E-value=0.0032 Score=45.99 Aligned_cols=25 Identities=24% Similarity=0.474 Sum_probs=21.7
Q ss_pred CCCceEEECCCCCcHHHHHHHHHHH
Q psy6208 119 PPRGILLYGPPGTGKTLIARAVANE 143 (197)
Q Consensus 119 ~~~~ill~G~~GtGKT~la~ala~~ 143 (197)
....+++.|++|+|||+|+.++...
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4457999999999999999999764
No 310
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=96.50 E-value=0.00086 Score=50.96 Aligned_cols=27 Identities=22% Similarity=0.394 Sum_probs=22.8
Q ss_pred CCCCceEEECCCCCcHHHHHHHHHHHh
Q psy6208 118 KPPRGILLYGPPGTGKTLIARAVANET 144 (197)
Q Consensus 118 ~~~~~ill~G~~GtGKT~la~ala~~~ 144 (197)
..+.-+.|.||+|+|||||++.++...
T Consensus 33 ~~Ge~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 33 EKGNVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp ETTCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 455568899999999999999997654
No 311
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=96.50 E-value=0.0011 Score=54.38 Aligned_cols=28 Identities=29% Similarity=0.512 Sum_probs=23.4
Q ss_pred CCCCCceEEECCCCCcHHHHHHHHHHHh
Q psy6208 117 VKPPRGILLYGPPGTGKTLIARAVANET 144 (197)
Q Consensus 117 ~~~~~~ill~G~~GtGKT~la~ala~~~ 144 (197)
+....-+.|.||+|+|||||++.|+...
T Consensus 27 i~~Ge~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 27 LDPGEILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp ECTTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred EcCCCEEEEECCCCchHHHHHHHHhcCC
Confidence 3455668899999999999999998754
No 312
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=96.49 E-value=0.00078 Score=56.64 Aligned_cols=24 Identities=33% Similarity=0.448 Sum_probs=19.7
Q ss_pred CCCceEEECCCCCcHHHHHHHHHH
Q psy6208 119 PPRGILLYGPPGTGKTLIARAVAN 142 (197)
Q Consensus 119 ~~~~ill~G~~GtGKT~la~ala~ 142 (197)
...-.++.|+||+|||+++..++.
T Consensus 160 ~~~v~~I~G~aGsGKTt~I~~~~~ 183 (446)
T 3vkw_A 160 SAKVVLVDGVPGCGKTKEILSRVN 183 (446)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHCC
T ss_pred cccEEEEEcCCCCCHHHHHHHHhc
Confidence 344468999999999999988765
No 313
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=96.49 E-value=0.001 Score=52.09 Aligned_cols=28 Identities=21% Similarity=0.478 Sum_probs=23.4
Q ss_pred CCCCCceEEECCCCCcHHHHHHHHHHHh
Q psy6208 117 VKPPRGILLYGPPGTGKTLIARAVANET 144 (197)
Q Consensus 117 ~~~~~~ill~G~~GtGKT~la~ala~~~ 144 (197)
+..+..+.|.||+|+|||||++.++...
T Consensus 47 i~~Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 47 IREGEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 3456668899999999999999997654
No 314
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=96.49 E-value=0.001 Score=51.99 Aligned_cols=28 Identities=25% Similarity=0.315 Sum_probs=23.5
Q ss_pred CCCCCceEEECCCCCcHHHHHHHHHHHh
Q psy6208 117 VKPPRGILLYGPPGTGKTLIARAVANET 144 (197)
Q Consensus 117 ~~~~~~ill~G~~GtGKT~la~ala~~~ 144 (197)
+.++..+.|.||+|+|||||++.++...
T Consensus 43 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 43 IPSGTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 3556678999999999999999997654
No 315
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=96.48 E-value=0.0012 Score=57.24 Aligned_cols=38 Identities=26% Similarity=0.392 Sum_probs=30.1
Q ss_pred CCCceEEECCCCCcHHHHHHHHHHHhC----CeEEEEechhh
Q psy6208 119 PPRGILLYGPPGTGKTLIARAVANETG----AFFFLINGPEI 156 (197)
Q Consensus 119 ~~~~ill~G~~GtGKT~la~ala~~~~----~~~~~v~~~~~ 156 (197)
.+..+.|.|++|+||||++++|+..++ ..+..++...+
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~ 409 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIV 409 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHH
T ss_pred cceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHH
Confidence 455689999999999999999999874 34556766554
No 316
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=96.47 E-value=0.0011 Score=52.27 Aligned_cols=28 Identities=32% Similarity=0.501 Sum_probs=23.4
Q ss_pred CCCCCceEEECCCCCcHHHHHHHHHHHh
Q psy6208 117 VKPPRGILLYGPPGTGKTLIARAVANET 144 (197)
Q Consensus 117 ~~~~~~ill~G~~GtGKT~la~ala~~~ 144 (197)
+..+..+.|.||+|+|||||++.|+...
T Consensus 42 i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 42 LYPGKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3556678999999999999999997654
No 317
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=96.47 E-value=0.00083 Score=51.10 Aligned_cols=70 Identities=16% Similarity=0.143 Sum_probs=37.1
Q ss_pred ceEEECCCCCcHHH-HHHHHHHHh--CCeEEEEechh--------hhhhccCcc-----HHHHHHHHHHHhcCCCeEEEE
Q psy6208 122 GILLYGPPGTGKTL-IARAVANET--GAFFFLINGPE--------IMSKLAGES-----ESNLRKAFEEADKNSPSIIFI 185 (197)
Q Consensus 122 ~ill~G~~GtGKT~-la~ala~~~--~~~~~~v~~~~--------~~~~~~~~~-----~~~~~~~~~~a~~~~~~vl~l 185 (197)
-.+++|+.|+|||+ |++.+.+.. +..++.+...- +.+.. |.. -.....+++.. ....++|+|
T Consensus 30 I~vitG~M~sGKTT~Llr~~~r~~~~g~kvli~kp~~D~R~~~~~I~Sr~-G~~~~a~~v~~~~di~~~i-~~~~dvV~I 107 (219)
T 3e2i_A 30 IECITGSMFSGKSEELIRRLRRGIYAKQKVVVFKPAIDDRYHKEKVVSHN-GNAIEAINISKASEIMTHD-LTNVDVIGI 107 (219)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEEC-----------CBT-TBCCEEEEESSGGGGGGSC-CTTCSEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCceEEEEeccCCcchhhhHHHhc-CCceeeEEeCCHHHHHHHH-hcCCCEEEE
Confidence 35899999999999 555553332 55555443211 00000 000 00011222221 235789999
Q ss_pred cccCccCc
Q psy6208 186 DELDAIAP 193 (197)
Q Consensus 186 Deid~l~~ 193 (197)
||+++|..
T Consensus 108 DEaQFf~~ 115 (219)
T 3e2i_A 108 DEVQFFDD 115 (219)
T ss_dssp CCGGGSCT
T ss_pred echhcCCH
Confidence 99999875
No 318
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=96.47 E-value=0.0011 Score=51.54 Aligned_cols=26 Identities=27% Similarity=0.484 Sum_probs=22.6
Q ss_pred CCCCceEEECCCCCcHHHHHHHHHHH
Q psy6208 118 KPPRGILLYGPPGTGKTLIARAVANE 143 (197)
Q Consensus 118 ~~~~~ill~G~~GtGKT~la~ala~~ 143 (197)
..+..+.|.||+|+|||||++.++..
T Consensus 27 ~~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 27 PKGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 45566889999999999999999874
No 319
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=96.47 E-value=0.0037 Score=49.93 Aligned_cols=27 Identities=26% Similarity=0.262 Sum_probs=23.0
Q ss_pred CCCceEEECCCCCcHHHHHHHHHHHhC
Q psy6208 119 PPRGILLYGPPGTGKTLIARAVANETG 145 (197)
Q Consensus 119 ~~~~ill~G~~GtGKT~la~ala~~~~ 145 (197)
.+.-+.|.||+|+||||+++.++..++
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 344578999999999999999998765
No 320
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=96.46 E-value=0.00092 Score=52.15 Aligned_cols=27 Identities=22% Similarity=0.411 Sum_probs=22.6
Q ss_pred CCCCceEEECCCCCcHHHHHHHHHHHh
Q psy6208 118 KPPRGILLYGPPGTGKTLIARAVANET 144 (197)
Q Consensus 118 ~~~~~ill~G~~GtGKT~la~ala~~~ 144 (197)
..+..+.|.||+|+|||||++.++...
T Consensus 31 ~~Ge~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 31 NKGDVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 455568899999999999999997643
No 321
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=96.45 E-value=0.00095 Score=51.16 Aligned_cols=27 Identities=22% Similarity=0.320 Sum_probs=23.2
Q ss_pred CCCCceEEECCCCCcHHHHHHHHHHHh
Q psy6208 118 KPPRGILLYGPPGTGKTLIARAVANET 144 (197)
Q Consensus 118 ~~~~~ill~G~~GtGKT~la~ala~~~ 144 (197)
.++..+.|.||+|+|||||++.++...
T Consensus 32 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 32 ERGQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 456678899999999999999998764
No 322
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.45 E-value=0.0012 Score=51.63 Aligned_cols=28 Identities=29% Similarity=0.393 Sum_probs=23.3
Q ss_pred CCCCCceEEECCCCCcHHHHHHHHHHHh
Q psy6208 117 VKPPRGILLYGPPGTGKTLIARAVANET 144 (197)
Q Consensus 117 ~~~~~~ill~G~~GtGKT~la~ala~~~ 144 (197)
+..+..+.|.||+|+|||||++.++...
T Consensus 38 i~~Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 38 IEEGEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 3456668899999999999999997654
No 323
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.43 E-value=0.00096 Score=51.51 Aligned_cols=27 Identities=30% Similarity=0.331 Sum_probs=22.6
Q ss_pred CCCCceEEECCCCCcHHHHHHHHHHHh
Q psy6208 118 KPPRGILLYGPPGTGKTLIARAVANET 144 (197)
Q Consensus 118 ~~~~~ill~G~~GtGKT~la~ala~~~ 144 (197)
..+..+.|.||+|+|||||++.++...
T Consensus 30 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 30 PRGQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 455568899999999999999997643
No 324
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=96.43 E-value=0.0012 Score=51.84 Aligned_cols=28 Identities=25% Similarity=0.425 Sum_probs=23.2
Q ss_pred CCCCCceEEECCCCCcHHHHHHHHHHHh
Q psy6208 117 VKPPRGILLYGPPGTGKTLIARAVANET 144 (197)
Q Consensus 117 ~~~~~~ill~G~~GtGKT~la~ala~~~ 144 (197)
+..+..+.|.||+|+|||||++.++...
T Consensus 30 i~~Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 30 INEGECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3556668899999999999999997643
No 325
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=96.43 E-value=0.00098 Score=52.61 Aligned_cols=27 Identities=19% Similarity=0.217 Sum_probs=22.7
Q ss_pred CCCCceEEECCCCCcHHHHHHHHHHHh
Q psy6208 118 KPPRGILLYGPPGTGKTLIARAVANET 144 (197)
Q Consensus 118 ~~~~~ill~G~~GtGKT~la~ala~~~ 144 (197)
.++.-+.|.||+|+|||||++.++...
T Consensus 32 ~~Ge~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 32 KRGEVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 455668999999999999999997644
No 326
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=96.43 E-value=0.00097 Score=51.75 Aligned_cols=27 Identities=22% Similarity=0.326 Sum_probs=22.8
Q ss_pred CCCCceEEECCCCCcHHHHHHHHHHHh
Q psy6208 118 KPPRGILLYGPPGTGKTLIARAVANET 144 (197)
Q Consensus 118 ~~~~~ill~G~~GtGKT~la~ala~~~ 144 (197)
.++..+.|.||+|+|||||++.++...
T Consensus 33 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 33 KQGEVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 455678999999999999999997654
No 327
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=96.42 E-value=0.0014 Score=53.70 Aligned_cols=28 Identities=29% Similarity=0.464 Sum_probs=23.3
Q ss_pred CCCCCceEEECCCCCcHHHHHHHHHHHh
Q psy6208 117 VKPPRGILLYGPPGTGKTLIARAVANET 144 (197)
Q Consensus 117 ~~~~~~ill~G~~GtGKT~la~ala~~~ 144 (197)
+..+.-+.|.||+|+|||||++.|+...
T Consensus 26 i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 26 IKDGEFMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred ECCCCEEEEECCCCchHHHHHHHHhcCC
Confidence 3455668899999999999999998754
No 328
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=96.41 E-value=0.0014 Score=49.53 Aligned_cols=24 Identities=38% Similarity=0.502 Sum_probs=20.9
Q ss_pred CCceEEECCCCCcHHHHHHHHHHH
Q psy6208 120 PRGILLYGPPGTGKTLIARAVANE 143 (197)
Q Consensus 120 ~~~ill~G~~GtGKT~la~ala~~ 143 (197)
+..+.|.||+|+|||||++.++..
T Consensus 22 Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 22 NTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp CSEEEEECCTTSSTTHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 446889999999999999999864
No 329
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=96.41 E-value=0.0014 Score=53.63 Aligned_cols=28 Identities=36% Similarity=0.387 Sum_probs=23.3
Q ss_pred CCCCCceEEECCCCCcHHHHHHHHHHHh
Q psy6208 117 VKPPRGILLYGPPGTGKTLIARAVANET 144 (197)
Q Consensus 117 ~~~~~~ill~G~~GtGKT~la~ala~~~ 144 (197)
+..+.-+.|.||+|+|||||++.++...
T Consensus 26 i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 26 VKDGEFVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred EcCCCEEEEEcCCCchHHHHHHHHHCCC
Confidence 3455668899999999999999998654
No 330
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=96.41 E-value=0.0015 Score=53.82 Aligned_cols=28 Identities=36% Similarity=0.533 Sum_probs=23.3
Q ss_pred CCCCCceEEECCCCCcHHHHHHHHHHHh
Q psy6208 117 VKPPRGILLYGPPGTGKTLIARAVANET 144 (197)
Q Consensus 117 ~~~~~~ill~G~~GtGKT~la~ala~~~ 144 (197)
+..+.-+.|.||+|+|||||++.|+...
T Consensus 34 i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 34 IKDGEFLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred ECCCCEEEEECCCCChHHHHHHHHHcCC
Confidence 3455668899999999999999998654
No 331
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=96.41 E-value=0.0015 Score=53.96 Aligned_cols=28 Identities=25% Similarity=0.500 Sum_probs=23.4
Q ss_pred CCCCCceEEECCCCCcHHHHHHHHHHHh
Q psy6208 117 VKPPRGILLYGPPGTGKTLIARAVANET 144 (197)
Q Consensus 117 ~~~~~~ill~G~~GtGKT~la~ala~~~ 144 (197)
+..+.-+.|.||+|+|||||++.|+...
T Consensus 26 i~~Ge~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 26 IHEGEFVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred ECCCCEEEEEcCCCchHHHHHHHHHcCC
Confidence 3455668899999999999999998754
No 332
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=96.40 E-value=0.011 Score=53.36 Aligned_cols=23 Identities=30% Similarity=0.381 Sum_probs=20.1
Q ss_pred CceEEECCCCCcHHHHHHHHHHH
Q psy6208 121 RGILLYGPPGTGKTLIARAVANE 143 (197)
Q Consensus 121 ~~ill~G~~GtGKT~la~ala~~ 143 (197)
..+.|.||.|+|||++++.++..
T Consensus 608 ~i~~ItGpNGsGKSTlLr~iagl 630 (800)
T 1wb9_A 608 RMLIITGPNMGGKSTYMRQTALI 630 (800)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCChHHHHHHHHHH
Confidence 45889999999999999999754
No 333
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.39 E-value=0.0023 Score=51.61 Aligned_cols=24 Identities=21% Similarity=0.198 Sum_probs=21.6
Q ss_pred ceEEECCCCCcHHHHHHHHHHHhC
Q psy6208 122 GILLYGPPGTGKTLIARAVANETG 145 (197)
Q Consensus 122 ~ill~G~~GtGKT~la~ala~~~~ 145 (197)
-+.|.||+|+||||+++.++..++
T Consensus 94 iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 478999999999999999988764
No 334
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=96.39 E-value=0.0011 Score=52.12 Aligned_cols=27 Identities=22% Similarity=0.417 Sum_probs=22.6
Q ss_pred CCCCceEEECCCCCcHHHHHHHHHHHh
Q psy6208 118 KPPRGILLYGPPGTGKTLIARAVANET 144 (197)
Q Consensus 118 ~~~~~ill~G~~GtGKT~la~ala~~~ 144 (197)
.++.-+.|.||+|+|||||++.++...
T Consensus 35 ~~Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 35 ASGEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp ETTCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 455668899999999999999997543
No 335
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=96.39 E-value=0.0011 Score=51.59 Aligned_cols=27 Identities=30% Similarity=0.457 Sum_probs=22.9
Q ss_pred CCCCceEEECCCCCcHHHHHHHHHHHh
Q psy6208 118 KPPRGILLYGPPGTGKTLIARAVANET 144 (197)
Q Consensus 118 ~~~~~ill~G~~GtGKT~la~ala~~~ 144 (197)
..+..+.|.||+|+|||||++.++...
T Consensus 24 ~~Ge~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 24 RAGEILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 455668899999999999999998654
No 336
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=96.37 E-value=0.0035 Score=54.95 Aligned_cols=24 Identities=38% Similarity=0.617 Sum_probs=19.5
Q ss_pred CceEEECCCCCcHHHHHHHHHHHh
Q psy6208 121 RGILLYGPPGTGKTLIARAVANET 144 (197)
Q Consensus 121 ~~ill~G~~GtGKT~la~ala~~~ 144 (197)
...+|+||||||||+++..+...+
T Consensus 196 ~~~li~GppGTGKT~~~~~~i~~l 219 (624)
T 2gk6_A 196 PLSLIQGPPGTGKTVTSATIVYHL 219 (624)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEECCCCCCHHHHHHHHHHHH
Confidence 357999999999999888776543
No 337
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=96.37 E-value=0.013 Score=49.43 Aligned_cols=34 Identities=26% Similarity=0.306 Sum_probs=26.5
Q ss_pred CCceEEECCCCCcHHHHHHHHHHHhC---CeEEEEec
Q psy6208 120 PRGILLYGPPGTGKTLIARAVANETG---AFFFLING 153 (197)
Q Consensus 120 ~~~ill~G~~GtGKT~la~ala~~~~---~~~~~v~~ 153 (197)
+..|++.|.||+|||++++.++..++ .+...++.
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~~ 75 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNV 75 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEec
Confidence 44689999999999999999998863 34444443
No 338
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=96.36 E-value=0.0028 Score=48.58 Aligned_cols=25 Identities=16% Similarity=0.272 Sum_probs=22.7
Q ss_pred CceEEECCCCCcHHHHHHHHHHHhC
Q psy6208 121 RGILLYGPPGTGKTLIARAVANETG 145 (197)
Q Consensus 121 ~~ill~G~~GtGKT~la~ala~~~~ 145 (197)
.-|.|.|++|+||||+++.+++.++
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 3588999999999999999999983
No 339
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=96.36 E-value=0.0041 Score=47.10 Aligned_cols=32 Identities=34% Similarity=0.328 Sum_probs=26.6
Q ss_pred CCceEEECCCCCcHHHHHHHHHHHhCCeEEEEe
Q psy6208 120 PRGILLYGPPGTGKTLIARAVANETGAFFFLIN 152 (197)
Q Consensus 120 ~~~ill~G~~GtGKT~la~ala~~~~~~~~~v~ 152 (197)
-..|-|+|..|||||++++.++. +|.+++..+
T Consensus 9 ~~~iglTGgigsGKStv~~~l~~-~g~~vidaD 40 (210)
T 4i1u_A 9 MYAIGLTGGIGSGKTTVADLFAA-RGASLVDTD 40 (210)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH-TTCEEEEHH
T ss_pred eeEEEEECCCCCCHHHHHHHHHH-CCCcEEECc
Confidence 34588999999999999999987 888776543
No 340
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=96.36 E-value=0.0013 Score=53.75 Aligned_cols=27 Identities=37% Similarity=0.534 Sum_probs=22.8
Q ss_pred CCCCceEEECCCCCcHHHHHHHHHHHh
Q psy6208 118 KPPRGILLYGPPGTGKTLIARAVANET 144 (197)
Q Consensus 118 ~~~~~ill~G~~GtGKT~la~ala~~~ 144 (197)
....-+.|.||+|+|||||++.|+...
T Consensus 39 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 39 REGEMVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 445568899999999999999998654
No 341
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=96.36 E-value=0.0013 Score=53.77 Aligned_cols=28 Identities=32% Similarity=0.523 Sum_probs=23.4
Q ss_pred CCCCCceEEECCCCCcHHHHHHHHHHHh
Q psy6208 117 VKPPRGILLYGPPGTGKTLIARAVANET 144 (197)
Q Consensus 117 ~~~~~~ill~G~~GtGKT~la~ala~~~ 144 (197)
+..+.-+.|.||+|+|||||++.|+...
T Consensus 23 i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 23 VESGEYFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp ECTTCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred EcCCCEEEEECCCCccHHHHHHHHHcCC
Confidence 3455668899999999999999998654
No 342
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=96.32 E-value=0.0012 Score=52.16 Aligned_cols=27 Identities=26% Similarity=0.370 Sum_probs=22.7
Q ss_pred CCCCceEEECCCCCcHHHHHHHHHHHh
Q psy6208 118 KPPRGILLYGPPGTGKTLIARAVANET 144 (197)
Q Consensus 118 ~~~~~ill~G~~GtGKT~la~ala~~~ 144 (197)
..+..+.|.||+|+|||||++.++...
T Consensus 45 ~~Ge~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 45 AKGDKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 455568899999999999999997654
No 343
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=96.31 E-value=0.0041 Score=47.09 Aligned_cols=32 Identities=28% Similarity=0.273 Sum_probs=25.6
Q ss_pred CCceEEECCCCCcHHHHHHHHHHHh---CCeEEEE
Q psy6208 120 PRGILLYGPPGTGKTLIARAVANET---GAFFFLI 151 (197)
Q Consensus 120 ~~~ill~G~~GtGKT~la~ala~~~---~~~~~~v 151 (197)
+.-|.|.|++|+|||++++.+++.+ +.+++..
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~ 40 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLT 40 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcccc
Confidence 3457899999999999999999887 4555544
No 344
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=96.31 E-value=0.0012 Score=51.34 Aligned_cols=27 Identities=15% Similarity=0.210 Sum_probs=23.0
Q ss_pred CCCCceEEECCCCCcHHHHHHHHHHHh
Q psy6208 118 KPPRGILLYGPPGTGKTLIARAVANET 144 (197)
Q Consensus 118 ~~~~~ill~G~~GtGKT~la~ala~~~ 144 (197)
.++..+.|.||+|+|||||++.++...
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 29 NKGDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp ETTCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 455568899999999999999998754
No 345
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=96.29 E-value=0.028 Score=45.41 Aligned_cols=27 Identities=22% Similarity=0.268 Sum_probs=22.6
Q ss_pred CCCCceEEECCCCCcHHHHHHHHHHHh
Q psy6208 118 KPPRGILLYGPPGTGKTLIARAVANET 144 (197)
Q Consensus 118 ~~~~~ill~G~~GtGKT~la~ala~~~ 144 (197)
.....+.|.|++|+|||+++..++..+
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 445568899999999999999998654
No 346
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=96.28 E-value=0.0015 Score=53.72 Aligned_cols=27 Identities=37% Similarity=0.523 Sum_probs=22.9
Q ss_pred CCCCceEEECCCCCcHHHHHHHHHHHh
Q psy6208 118 KPPRGILLYGPPGTGKTLIARAVANET 144 (197)
Q Consensus 118 ~~~~~ill~G~~GtGKT~la~ala~~~ 144 (197)
..+.-+.|.||+|+|||||++.|+...
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 27 KDGEFMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred cCCCEEEEECCCCcHHHHHHHHHHcCC
Confidence 445568899999999999999998754
No 347
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=96.28 E-value=0.0028 Score=54.31 Aligned_cols=35 Identities=9% Similarity=0.078 Sum_probs=28.3
Q ss_pred CCceEEECCCCCcHHHHHHHHHHHhCC-----eEEEEech
Q psy6208 120 PRGILLYGPPGTGKTLIARAVANETGA-----FFFLINGP 154 (197)
Q Consensus 120 ~~~ill~G~~GtGKT~la~ala~~~~~-----~~~~v~~~ 154 (197)
...|+|.|.+|+|||++++++++.++. ++.+++..
T Consensus 395 ~~~I~l~GlsGsGKSTIa~~La~~L~~~~g~r~~~~lDgD 434 (511)
T 1g8f_A 395 GFSIVLGNSLTVSREQLSIALLSTFLQFGGGRYYKIFEHN 434 (511)
T ss_dssp CEEEEECTTCCSCHHHHHHHHHHHHTTSCSCCCEEECCCT
T ss_pred ceEEEecccCCCCHHHHHHHHHHHHHHhhcCcceEEecCC
Confidence 456899999999999999999999974 34455543
No 348
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=96.27 E-value=0.0037 Score=46.84 Aligned_cols=25 Identities=24% Similarity=0.424 Sum_probs=22.2
Q ss_pred CCceEEECCCCCcHHHHHHHHHHHh
Q psy6208 120 PRGILLYGPPGTGKTLIARAVANET 144 (197)
Q Consensus 120 ~~~ill~G~~GtGKT~la~ala~~~ 144 (197)
...++|.|++|+|||+++..++...
T Consensus 30 ~~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 30 TVAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 4568999999999999999998875
No 349
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=96.27 E-value=0.0064 Score=52.68 Aligned_cols=25 Identities=28% Similarity=0.360 Sum_probs=20.4
Q ss_pred CCceEEECCCCCcHHHHHHHHHHHh
Q psy6208 120 PRGILLYGPPGTGKTLIARAVANET 144 (197)
Q Consensus 120 ~~~ill~G~~GtGKT~la~ala~~~ 144 (197)
...+++.+|+|+|||..+-.++..+
T Consensus 198 ~~~~ll~~~TGsGKT~~~~~~~~~l 222 (590)
T 3h1t_A 198 KKRSLITMATGTGKTVVAFQISWKL 222 (590)
T ss_dssp CSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCceEEEecCCCChHHHHHHHHHHH
Confidence 4568999999999999987776553
No 350
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=96.26 E-value=0.04 Score=49.59 Aligned_cols=35 Identities=29% Similarity=0.374 Sum_probs=24.4
Q ss_pred CCCceEEECCCCCcHHHHHHHHHHHh---CCeEEEEec
Q psy6208 119 PPRGILLYGPPGTGKTLIARAVANET---GAFFFLING 153 (197)
Q Consensus 119 ~~~~ill~G~~GtGKT~la~ala~~~---~~~~~~v~~ 153 (197)
.+.++++.||+|+|||..+-..+-.. +...+.+..
T Consensus 388 ~~~~~Ll~a~TGSGKTlvall~il~~l~~g~qvlvlaP 425 (780)
T 1gm5_A 388 KPMNRLLQGDVGSGKTVVAQLAILDNYEAGFQTAFMVP 425 (780)
T ss_dssp SCCCCEEECCSSSSHHHHHHHHHHHHHHHTSCEEEECS
T ss_pred CCCcEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 34679999999999999776543322 555665543
No 351
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=96.26 E-value=0.0035 Score=53.42 Aligned_cols=38 Identities=18% Similarity=0.062 Sum_probs=30.5
Q ss_pred CCCCCCceEEECCCCCcHHHHHHHHHHHh----CCeEEEEec
Q psy6208 116 GVKPPRGILLYGPPGTGKTLIARAVANET----GAFFFLING 153 (197)
Q Consensus 116 ~~~~~~~ill~G~~GtGKT~la~ala~~~----~~~~~~v~~ 153 (197)
|+.+..-++|.|+||+|||+++..++... +.++++++.
T Consensus 238 Gl~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~ 279 (503)
T 1q57_A 238 GARGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAML 279 (503)
T ss_dssp CCCTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEES
T ss_pred ccCCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEec
Confidence 45556668999999999999999998764 457888775
No 352
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=96.24 E-value=0.0024 Score=50.22 Aligned_cols=23 Identities=22% Similarity=0.498 Sum_probs=20.5
Q ss_pred ceEEECCCCCcHHHHHHHHHHHh
Q psy6208 122 GILLYGPPGTGKTLIARAVANET 144 (197)
Q Consensus 122 ~ill~G~~GtGKT~la~ala~~~ 144 (197)
.+.|.||+|+|||||++.++...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999998754
No 353
>1cz4_A VCP-like ATPase; double-PSI beta-barrel, beta-CLAM, substrate recognition DOM hydrolase; NMR {Thermoplasma acidophilum} SCOP: b.52.2.3 d.31.1.1 PDB: 1cz5_A
Probab=96.22 E-value=0.0084 Score=44.44 Aligned_cols=60 Identities=25% Similarity=0.402 Sum_probs=51.7
Q ss_pred hhHHHHhHHHhhhcCcccccCCEEEEec---Ccc-eEEEEEEEecCCC-eEEEcCceEEEEcCCCCc
Q psy6208 11 NLFEVYLKPYFLEAYRPVHKDDLFIVRG---GMR-AVEFKIVDTDPAP-YCIVAADTVIHCEGDPIK 72 (197)
Q Consensus 11 ~~~~~f~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~ 72 (197)
+.+..|+++||.+ +++..|+.+.+.. .+. .+.|+|+.++|.+ .+.+.+.|.+.+...|..
T Consensus 114 ~~~~~~l~~~l~~--rpv~~Gd~v~v~~~~~~g~~~~~f~Vv~t~P~~~~v~Vt~~T~I~i~~~p~~ 178 (185)
T 1cz4_A 114 EGIEEYVQRALIR--RPMLEQDNISVPGLTLAGQTGLLFKVVKTLPSKVPVEIGEETKIEIREEPAS 178 (185)
T ss_dssp SSHHHHHHHHHTT--CEECTTCEECCSSCCCSSCCCCEEEEEEESSSSSCEECCTTCEEEECSCCST
T ss_pred cchHHHHHHHHCC--CcccCCCEEEEeeeccCCCeEEEEEEEEEcCCCceEEEcCCeEEEECCccch
Confidence 4457899999997 5899999999874 556 8999999999999 999999999999877754
No 354
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=96.20 E-value=0.0031 Score=51.55 Aligned_cols=28 Identities=14% Similarity=0.329 Sum_probs=23.9
Q ss_pred CCceEEECCCCCcHHHHHHHHHHHhCCe
Q psy6208 120 PRGILLYGPPGTGKTLIARAVANETGAF 147 (197)
Q Consensus 120 ~~~ill~G~~GtGKT~la~ala~~~~~~ 147 (197)
...+.|.||+|+|||||++.|+......
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~~~ 197 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFNTT 197 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTTCE
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 4568999999999999999999877543
No 355
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=96.20 E-value=0.0013 Score=51.27 Aligned_cols=26 Identities=15% Similarity=0.179 Sum_probs=23.1
Q ss_pred CCceEEECCCCCcHHHHHHHHHHHhC
Q psy6208 120 PRGILLYGPPGTGKTLIARAVANETG 145 (197)
Q Consensus 120 ~~~ill~G~~GtGKT~la~ala~~~~ 145 (197)
+.-|.|.|++|+||||+++.|++.+.
T Consensus 24 ~~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 24 IKKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp CEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 44589999999999999999999883
No 356
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=96.19 E-value=0.002 Score=53.38 Aligned_cols=27 Identities=26% Similarity=0.452 Sum_probs=23.1
Q ss_pred CCCCCceEEECCCCCcHHHHHHHHHHH
Q psy6208 117 VKPPRGILLYGPPGTGKTLIARAVANE 143 (197)
Q Consensus 117 ~~~~~~ill~G~~GtGKT~la~ala~~ 143 (197)
+....-+.|.||+|+|||||++.|+..
T Consensus 44 i~~Ge~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 44 ISPGQRVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp ECTTCEEEEEESTTSSHHHHHHHHHTC
T ss_pred EcCCCEEEEECCCCChHHHHHHHHhCC
Confidence 455667899999999999999999864
No 357
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=96.17 E-value=0.0013 Score=53.70 Aligned_cols=28 Identities=29% Similarity=0.485 Sum_probs=23.3
Q ss_pred CCCCCceEEECCCCCcHHHHHHHHHHHh
Q psy6208 117 VKPPRGILLYGPPGTGKTLIARAVANET 144 (197)
Q Consensus 117 ~~~~~~ill~G~~GtGKT~la~ala~~~ 144 (197)
+..+.-+.|.||+|+|||||++.|+...
T Consensus 28 i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 28 IENGERFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp ECTTCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred ECCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3455668899999999999999998654
No 358
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=96.16 E-value=0.0064 Score=50.03 Aligned_cols=34 Identities=21% Similarity=0.427 Sum_probs=26.7
Q ss_pred CCCceEEECCCCCcHHHHHHHHHHHh---CCeEEEEe
Q psy6208 119 PPRGILLYGPPGTGKTLIARAVANET---GAFFFLIN 152 (197)
Q Consensus 119 ~~~~ill~G~~GtGKT~la~ala~~~---~~~~~~v~ 152 (197)
...++++.|++|+|||++++.++... +..++.++
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D 70 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIIID 70 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEe
Confidence 46689999999999999999987654 45555554
No 359
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=96.15 E-value=0.002 Score=50.48 Aligned_cols=27 Identities=33% Similarity=0.645 Sum_probs=22.9
Q ss_pred CCCCCceEEECCCCCcHHHHHHHHHHHh
Q psy6208 117 VKPPRGILLYGPPGTGKTLIARAVANET 144 (197)
Q Consensus 117 ~~~~~~ill~G~~GtGKT~la~ala~~~ 144 (197)
+. +..+.|.||+|+|||||++.++...
T Consensus 28 i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 28 VN-GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EC-SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EC-CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 45 5568899999999999999998654
No 360
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=96.13 E-value=0.0033 Score=46.42 Aligned_cols=22 Identities=23% Similarity=0.471 Sum_probs=20.2
Q ss_pred ceEEECCCCCcHHHHHHHHHHH
Q psy6208 122 GILLYGPPGTGKTLIARAVANE 143 (197)
Q Consensus 122 ~ill~G~~GtGKT~la~ala~~ 143 (197)
.+.|.|++|+|||+|++.++..
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5899999999999999999875
No 361
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=96.12 E-value=0.0018 Score=47.45 Aligned_cols=23 Identities=17% Similarity=0.216 Sum_probs=20.9
Q ss_pred ceEEECCCCCcHHHHHHHHHHHh
Q psy6208 122 GILLYGPPGTGKTLIARAVANET 144 (197)
Q Consensus 122 ~ill~G~~GtGKT~la~ala~~~ 144 (197)
.+.|.|++|+|||+|++.++..+
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~~ 26 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPIL 26 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999998876
No 362
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=96.12 E-value=0.0019 Score=51.32 Aligned_cols=28 Identities=21% Similarity=0.345 Sum_probs=23.6
Q ss_pred CCCCCceEEECCCCCcHHHHHHHHHHHh
Q psy6208 117 VKPPRGILLYGPPGTGKTLIARAVANET 144 (197)
Q Consensus 117 ~~~~~~ill~G~~GtGKT~la~ala~~~ 144 (197)
+..+..+.|.||+|+|||||++.++...
T Consensus 61 i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 61 IERGQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp ECTTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 4556668899999999999999998654
No 363
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=96.10 E-value=0.0031 Score=46.36 Aligned_cols=23 Identities=22% Similarity=0.449 Sum_probs=20.5
Q ss_pred ceEEECCCCCcHHHHHHHHHHHh
Q psy6208 122 GILLYGPPGTGKTLIARAVANET 144 (197)
Q Consensus 122 ~ill~G~~GtGKT~la~ala~~~ 144 (197)
.+.|.|++|+|||+|++.++...
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 48999999999999999998753
No 364
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=96.09 E-value=0.0071 Score=45.92 Aligned_cols=29 Identities=24% Similarity=0.171 Sum_probs=25.2
Q ss_pred CCceEEECCCCCcHHHHHHHHHHHhCCeE
Q psy6208 120 PRGILLYGPPGTGKTLIARAVANETGAFF 148 (197)
Q Consensus 120 ~~~ill~G~~GtGKT~la~ala~~~~~~~ 148 (197)
+.-|.|.|++|+|||++++.+++.++..+
T Consensus 5 g~~i~~eG~~g~GKst~~~~l~~~l~~~~ 33 (216)
T 3tmk_A 5 GKLILIEGLDRTGKTTQCNILYKKLQPNC 33 (216)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHHHCSSE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcccc
Confidence 45688999999999999999999997643
No 365
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.08 E-value=0.0044 Score=46.25 Aligned_cols=26 Identities=23% Similarity=0.475 Sum_probs=22.4
Q ss_pred CCCceEEECCCCCcHHHHHHHHHHHh
Q psy6208 119 PPRGILLYGPPGTGKTLIARAVANET 144 (197)
Q Consensus 119 ~~~~ill~G~~GtGKT~la~ala~~~ 144 (197)
....++|.|++|+|||+|+.++....
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34579999999999999999998754
No 366
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=96.07 E-value=0.012 Score=48.53 Aligned_cols=32 Identities=34% Similarity=0.490 Sum_probs=24.7
Q ss_pred ceEEECCCCCcHHHHHHHHHHHh----CCeEEEEec
Q psy6208 122 GILLYGPPGTGKTLIARAVANET----GAFFFLING 153 (197)
Q Consensus 122 ~ill~G~~GtGKT~la~ala~~~----~~~~~~v~~ 153 (197)
++++..|+|+|||..+-+++... +.+++.+..
T Consensus 25 ~~ll~~~tG~GKT~~~~~~~~~~~~~~~~~~liv~P 60 (494)
T 1wp9_A 25 NCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAP 60 (494)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHHHHSCSCEEEECS
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHhcCCCeEEEEEC
Confidence 79999999999999888776554 556666554
No 367
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=96.07 E-value=0.0032 Score=53.27 Aligned_cols=28 Identities=21% Similarity=0.293 Sum_probs=24.1
Q ss_pred CCCCCceEEECCCCCcHHHHHHHHHHHh
Q psy6208 117 VKPPRGILLYGPPGTGKTLIARAVANET 144 (197)
Q Consensus 117 ~~~~~~ill~G~~GtGKT~la~ala~~~ 144 (197)
+..+..+.|.||+|+|||+|++.|+...
T Consensus 135 i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 135 NFEGPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp SSSCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred eCCCCEEEEECCCCCCHHHHHHHHhCcc
Confidence 4566779999999999999999998754
No 368
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=96.07 E-value=0.0065 Score=52.50 Aligned_cols=38 Identities=29% Similarity=0.357 Sum_probs=30.5
Q ss_pred CCceEEECCCCCcHHHHHHHHHHHh---CCeEEEEechhhh
Q psy6208 120 PRGILLYGPPGTGKTLIARAVANET---GAFFFLINGPEIM 157 (197)
Q Consensus 120 ~~~ill~G~~GtGKT~la~ala~~~---~~~~~~v~~~~~~ 157 (197)
+..|+|.|++|+|||++++.++..+ |.++..++...+.
T Consensus 372 ~~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~D~ir 412 (546)
T 2gks_A 372 GFCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGDVVR 412 (546)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECHHHHH
T ss_pred ceEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECchHhh
Confidence 4458999999999999999999876 4567777765543
No 369
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=96.05 E-value=0.016 Score=47.50 Aligned_cols=21 Identities=24% Similarity=0.352 Sum_probs=19.0
Q ss_pred ceEEECCCCCcHHHHHHHHHH
Q psy6208 122 GILLYGPPGTGKTLIARAVAN 142 (197)
Q Consensus 122 ~ill~G~~GtGKT~la~ala~ 142 (197)
.+.|.|++|+|||+|..++..
T Consensus 181 ~V~lvG~~naGKSTLln~L~~ 201 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTG 201 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHC
Confidence 388999999999999999974
No 370
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=96.04 E-value=0.003 Score=51.82 Aligned_cols=28 Identities=25% Similarity=0.280 Sum_probs=23.3
Q ss_pred CCCCCceEEECCCCCcHHHHHHHHHHHh
Q psy6208 117 VKPPRGILLYGPPGTGKTLIARAVANET 144 (197)
Q Consensus 117 ~~~~~~ill~G~~GtGKT~la~ala~~~ 144 (197)
+..+.-+.|.||+|+|||||+++++...
T Consensus 51 i~~Gei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 51 VPAGQIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EcCCCEEEEEcCCCchHHHHHHHHhcCC
Confidence 3556668899999999999999997644
No 371
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.01 E-value=0.0043 Score=44.16 Aligned_cols=23 Identities=26% Similarity=0.333 Sum_probs=20.2
Q ss_pred ceEEECCCCCcHHHHHHHHHHHh
Q psy6208 122 GILLYGPPGTGKTLIARAVANET 144 (197)
Q Consensus 122 ~ill~G~~GtGKT~la~ala~~~ 144 (197)
-.+|+||.|+|||+++.|++-.+
T Consensus 25 ~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 46899999999999999998655
No 372
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=96.01 E-value=0.0019 Score=51.73 Aligned_cols=28 Identities=36% Similarity=0.536 Sum_probs=23.7
Q ss_pred CCCCCceEEECCCCCcHHHHHHHHHHHh
Q psy6208 117 VKPPRGILLYGPPGTGKTLIARAVANET 144 (197)
Q Consensus 117 ~~~~~~ill~G~~GtGKT~la~ala~~~ 144 (197)
+.++..+.|.||+|+|||||++.++...
T Consensus 77 i~~Ge~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 77 VMPGQTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp ECTTCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCchHHHHHHHHHcCC
Confidence 4566679999999999999999997654
No 373
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=96.01 E-value=0.017 Score=51.93 Aligned_cols=23 Identities=30% Similarity=0.369 Sum_probs=20.0
Q ss_pred CceEEECCCCCcHHHHHHHHHHH
Q psy6208 121 RGILLYGPPGTGKTLIARAVANE 143 (197)
Q Consensus 121 ~~ill~G~~GtGKT~la~ala~~ 143 (197)
..+.|.||+|+|||++++.++..
T Consensus 577 ~i~~I~GpNGsGKSTlLr~iagl 599 (765)
T 1ewq_A 577 ELVLITGPNMAGKSTFLRQTALI 599 (765)
T ss_dssp CEEEEESCSSSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCChHHHHHHHHhh
Confidence 45789999999999999999753
No 374
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=96.00 E-value=0.0069 Score=54.67 Aligned_cols=24 Identities=38% Similarity=0.617 Sum_probs=19.5
Q ss_pred CceEEECCCCCcHHHHHHHHHHHh
Q psy6208 121 RGILLYGPPGTGKTLIARAVANET 144 (197)
Q Consensus 121 ~~ill~G~~GtGKT~la~ala~~~ 144 (197)
...+|.||||||||+++..++..+
T Consensus 372 ~~~lI~GppGTGKT~ti~~~i~~l 395 (800)
T 2wjy_A 372 PLSLIQGPPGTGKTVTSATIVYHL 395 (800)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHH
Confidence 357999999999999888776543
No 375
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=96.00 E-value=0.0044 Score=43.57 Aligned_cols=22 Identities=18% Similarity=0.474 Sum_probs=19.8
Q ss_pred ceEEECCCCCcHHHHHHHHHHH
Q psy6208 122 GILLYGPPGTGKTLIARAVANE 143 (197)
Q Consensus 122 ~ill~G~~GtGKT~la~ala~~ 143 (197)
.+++.|++|+|||+|+.++...
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999764
No 376
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=95.95 E-value=0.0047 Score=47.32 Aligned_cols=25 Identities=24% Similarity=0.213 Sum_probs=19.0
Q ss_pred CCceEEECCCCCcHHHHHHHHHHHh
Q psy6208 120 PRGILLYGPPGTGKTLIARAVANET 144 (197)
Q Consensus 120 ~~~ill~G~~GtGKT~la~ala~~~ 144 (197)
+.-|.|.|++|+||||+++.+++.+
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~~l 49 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCDRL 49 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3458899999999999999999877
No 377
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=95.95 E-value=0.011 Score=46.05 Aligned_cols=23 Identities=35% Similarity=0.515 Sum_probs=20.3
Q ss_pred CceEEECCCCCcHHHHHHHHHHH
Q psy6208 121 RGILLYGPPGTGKTLIARAVANE 143 (197)
Q Consensus 121 ~~ill~G~~GtGKT~la~ala~~ 143 (197)
..+.|.|++|+|||+|..++...
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 36899999999999999999754
No 378
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=95.93 E-value=0.0058 Score=52.41 Aligned_cols=37 Identities=24% Similarity=0.235 Sum_probs=26.8
Q ss_pred CCCCCceEEECCCCCcHHHHHHHH--HHHh--CCeEEEEec
Q psy6208 117 VKPPRGILLYGPPGTGKTLIARAV--ANET--GAFFFLING 153 (197)
Q Consensus 117 ~~~~~~ill~G~~GtGKT~la~al--a~~~--~~~~~~v~~ 153 (197)
+.....++|.||+|+|||+|++.+ +... +...++++.
T Consensus 36 i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g 76 (525)
T 1tf7_A 36 LPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTF 76 (525)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEES
T ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEE
Confidence 356677999999999999999994 3332 444556654
No 379
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=95.93 E-value=0.0098 Score=48.96 Aligned_cols=21 Identities=24% Similarity=0.442 Sum_probs=16.8
Q ss_pred CCceEEECCCCCcHHHHHHHH
Q psy6208 120 PRGILLYGPPGTGKTLIARAV 140 (197)
Q Consensus 120 ~~~ill~G~~GtGKT~la~al 140 (197)
...+++.+|+|+|||......
T Consensus 36 ~~~~lv~apTGsGKT~~~l~~ 56 (414)
T 3oiy_A 36 GKSFTMVAPTGVGKTTFGMMT 56 (414)
T ss_dssp TCCEECCSCSSSSHHHHHHHH
T ss_pred CCCEEEEeCCCCCHHHHHHHH
Confidence 457999999999999954443
No 380
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=95.92 E-value=0.0048 Score=43.64 Aligned_cols=23 Identities=13% Similarity=0.252 Sum_probs=20.5
Q ss_pred CceEEECCCCCcHHHHHHHHHHH
Q psy6208 121 RGILLYGPPGTGKTLIARAVANE 143 (197)
Q Consensus 121 ~~ill~G~~GtGKT~la~ala~~ 143 (197)
-.|++.|++|+|||+|+.++...
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 46899999999999999999764
No 381
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=95.89 E-value=0.0048 Score=53.97 Aligned_cols=25 Identities=32% Similarity=0.407 Sum_probs=20.6
Q ss_pred CCceEEECCCCCcHHHHHHHHHHHh
Q psy6208 120 PRGILLYGPPGTGKTLIARAVANET 144 (197)
Q Consensus 120 ~~~ill~G~~GtGKT~la~ala~~~ 144 (197)
...++++|+||||||+++..+...+
T Consensus 164 ~~~~vi~G~pGTGKTt~l~~ll~~l 188 (608)
T 1w36_D 164 RRISVISGGPGTGKTTTVAKLLAAL 188 (608)
T ss_dssp BSEEEEECCTTSTHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCHHHHHHHHHHHH
Confidence 4568999999999999988776543
No 382
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=95.89 E-value=0.0079 Score=50.54 Aligned_cols=30 Identities=27% Similarity=0.356 Sum_probs=25.5
Q ss_pred CCCCCceEEECCCCCcHHHHHHHHHHHhCC
Q psy6208 117 VKPPRGILLYGPPGTGKTLIARAVANETGA 146 (197)
Q Consensus 117 ~~~~~~ill~G~~GtGKT~la~ala~~~~~ 146 (197)
+..+..+.|.||+|+|||+|++.|+.....
T Consensus 154 i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~ 183 (438)
T 2dpy_A 154 VGRGQRMGLFAGSGVGKSVLLGMMARYTRA 183 (438)
T ss_dssp CBTTCEEEEEECTTSSHHHHHHHHHHHSCC
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHhcccCC
Confidence 455666899999999999999999998743
No 383
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=95.88 E-value=0.024 Score=52.56 Aligned_cols=21 Identities=29% Similarity=0.463 Sum_probs=19.0
Q ss_pred CceEEECCCCCcHHHHHHHHH
Q psy6208 121 RGILLYGPPGTGKTLIARAVA 141 (197)
Q Consensus 121 ~~ill~G~~GtGKT~la~ala 141 (197)
..++|+||.|+|||++++.++
T Consensus 790 ~i~~ItGpNgsGKSTlLr~iG 810 (1022)
T 2o8b_B 790 YCVLVTGPNMGGKSTLMRQAG 810 (1022)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCChHHHHHHHH
Confidence 558899999999999999984
No 384
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=95.88 E-value=0.0039 Score=45.41 Aligned_cols=21 Identities=24% Similarity=0.570 Sum_probs=19.2
Q ss_pred ceEEECCCCCcHHHHHHHHHH
Q psy6208 122 GILLYGPPGTGKTLIARAVAN 142 (197)
Q Consensus 122 ~ill~G~~GtGKT~la~ala~ 142 (197)
.++|.|++|+|||+|++.++.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 489999999999999999975
No 385
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=95.87 E-value=0.0054 Score=43.19 Aligned_cols=22 Identities=18% Similarity=0.437 Sum_probs=19.8
Q ss_pred ceEEECCCCCcHHHHHHHHHHH
Q psy6208 122 GILLYGPPGTGKTLIARAVANE 143 (197)
Q Consensus 122 ~ill~G~~GtGKT~la~ala~~ 143 (197)
.|++.|++|+|||+|+.++...
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999998754
No 386
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=95.87 E-value=0.0048 Score=44.05 Aligned_cols=21 Identities=38% Similarity=0.575 Sum_probs=19.4
Q ss_pred ceEEECCCCCcHHHHHHHHHH
Q psy6208 122 GILLYGPPGTGKTLIARAVAN 142 (197)
Q Consensus 122 ~ill~G~~GtGKT~la~ala~ 142 (197)
.+.|.|++|+|||+|+++++.
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 589999999999999999975
No 387
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=95.85 E-value=0.0057 Score=47.11 Aligned_cols=25 Identities=24% Similarity=0.371 Sum_probs=22.2
Q ss_pred CCceEEECCCCCcHHHHHHHHHHHh
Q psy6208 120 PRGILLYGPPGTGKTLIARAVANET 144 (197)
Q Consensus 120 ~~~ill~G~~GtGKT~la~ala~~~ 144 (197)
+.-|.|.|++|+|||++++.++..+
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l 51 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETL 51 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3458899999999999999999877
No 388
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=95.85 E-value=0.0078 Score=48.26 Aligned_cols=23 Identities=43% Similarity=0.518 Sum_probs=20.3
Q ss_pred ceEEECCCCCcHHHHHHHHHHHh
Q psy6208 122 GILLYGPPGTGKTLIARAVANET 144 (197)
Q Consensus 122 ~ill~G~~GtGKT~la~ala~~~ 144 (197)
-++|.|+.|+||||+++.+....
T Consensus 6 v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 6 VTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEESSSSSCHHHHHHHHHSC
T ss_pred EEEEEecCCCCHHHHHHHHHhhc
Confidence 47899999999999999998653
No 389
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=95.85 E-value=0.027 Score=47.73 Aligned_cols=24 Identities=21% Similarity=0.560 Sum_probs=18.8
Q ss_pred CCceEEECCCCCcHHHHHHHHHHH
Q psy6208 120 PRGILLYGPPGTGKTLIARAVANE 143 (197)
Q Consensus 120 ~~~ill~G~~GtGKT~la~ala~~ 143 (197)
...+++.+|+|+|||..+-..+..
T Consensus 19 ~~~~l~~~~tGsGKT~~~~~~~~~ 42 (555)
T 3tbk_A 19 GKNTIICAPTGCGKTFVSLLICEH 42 (555)
T ss_dssp TCCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCEEEEeCCCChHHHHHHHHHHH
Confidence 357999999999999876655433
No 390
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=95.84 E-value=0.0057 Score=51.02 Aligned_cols=23 Identities=17% Similarity=0.355 Sum_probs=20.4
Q ss_pred CCceEEECCCCCcHHHHHHHHHH
Q psy6208 120 PRGILLYGPPGTGKTLIARAVAN 142 (197)
Q Consensus 120 ~~~ill~G~~GtGKT~la~ala~ 142 (197)
...+.|.||+|+|||||+++++.
T Consensus 69 ~~~valvG~nGaGKSTLln~L~G 91 (413)
T 1tq4_A 69 VLNVAVTGETGSGKSSFINTLRG 91 (413)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHT
T ss_pred CeEEEEECCCCCcHHHHHHHHhC
Confidence 34578999999999999999987
No 391
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=95.83 E-value=0.031 Score=57.08 Aligned_cols=92 Identities=22% Similarity=0.282 Sum_probs=61.5
Q ss_pred cccCcHHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhhhccCccHH
Q psy6208 87 DIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESES 166 (197)
Q Consensus 87 ~i~g~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~~GtGKT~la~ala~~~~~~~~~v~~~~~~~~~~~~~~~ 166 (197)
+++-.++++..+.+...-. -.+.++.||.|..|+||++|++..|...+..++.+..+.-.+ ..+-..
T Consensus 1624 ~LVlF~daleHv~RI~RIL-----------~qp~GhaLLVGvgGSGkqSLtrLAa~i~~~~vfqi~i~k~Y~--~~~f~e 1690 (3245)
T 3vkg_A 1624 PLVLFNEVLDHILRIDRVF-----------RQPQGHALLIGVSGGGKSVLSRFVAWMNGLSIYTIKVNNNYK--SSDFDD 1690 (3245)
T ss_dssp CCCCCHHHHHHHHHHHHHH-----------TSTTCCEEEEESTTSSHHHHHHHHHHHTTCEEECCC----CC--HHHHHH
T ss_pred eEEeHHHHHHHHHHHHHHH-----------ccCCCCeEEecCCCCcHHHHHHHHHHHhCCeeEEEeeeCCCC--HHHHHH
Confidence 4556666666665543321 145668999999999999999999999999988776433211 112345
Q ss_pred HHHHHHHHH-hcCCCeEEEEcccCcc
Q psy6208 167 NLRKAFEEA-DKNSPSIIFIDELDAI 191 (197)
Q Consensus 167 ~~~~~~~~a-~~~~~~vl~lDeid~l 191 (197)
.++.++..+ ..+.+.+++++|-+-.
T Consensus 1691 DLk~l~~~aG~~~~~~vFL~tD~qi~ 1716 (3245)
T 3vkg_A 1691 DLRMLLKRAGCKEEKICFIFDESNVL 1716 (3245)
T ss_dssp HHHHHHHHHHTSCCCEEEEEEGGGCS
T ss_pred HHHHHHHHHhcCCCCEEEEEeccccc
Confidence 677777766 3567889999886543
No 392
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=95.82 E-value=0.012 Score=49.12 Aligned_cols=33 Identities=18% Similarity=0.152 Sum_probs=21.8
Q ss_pred CCceEEECCCCCcHHHHH-HHHHH---HhCCeEEEEe
Q psy6208 120 PRGILLYGPPGTGKTLIA-RAVAN---ETGAFFFLIN 152 (197)
Q Consensus 120 ~~~ill~G~~GtGKT~la-~ala~---~~~~~~~~v~ 152 (197)
...+++.||+|+|||..+ .++.+ ..+...+.+.
T Consensus 2 g~~~lv~a~TGsGKT~~~l~~~l~~~~~~g~~~lvl~ 38 (431)
T 2v6i_A 2 RELTVLDLHPGAGKTRRVLPQLVREAVKKRLRTVILA 38 (431)
T ss_dssp CCEEEEECCTTSCTTTTHHHHHHHHHHHTTCCEEEEE
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEC
Confidence 357999999999999975 43332 2244455544
No 393
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.79 E-value=0.0058 Score=43.20 Aligned_cols=22 Identities=23% Similarity=0.409 Sum_probs=19.8
Q ss_pred ceEEECCCCCcHHHHHHHHHHH
Q psy6208 122 GILLYGPPGTGKTLIARAVANE 143 (197)
Q Consensus 122 ~ill~G~~GtGKT~la~ala~~ 143 (197)
.|++.|++|+|||+|+.++...
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999754
No 394
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=95.79 E-value=0.0052 Score=43.14 Aligned_cols=22 Identities=18% Similarity=0.450 Sum_probs=19.9
Q ss_pred ceEEECCCCCcHHHHHHHHHHH
Q psy6208 122 GILLYGPPGTGKTLIARAVANE 143 (197)
Q Consensus 122 ~ill~G~~GtGKT~la~ala~~ 143 (197)
.+++.|++|+|||+|+.++...
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999764
No 395
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=95.77 E-value=0.0061 Score=42.95 Aligned_cols=23 Identities=17% Similarity=0.449 Sum_probs=20.4
Q ss_pred CceEEECCCCCcHHHHHHHHHHH
Q psy6208 121 RGILLYGPPGTGKTLIARAVANE 143 (197)
Q Consensus 121 ~~ill~G~~GtGKT~la~ala~~ 143 (197)
..|++.|++|+|||+|+.++...
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 46899999999999999999764
No 396
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=95.76 E-value=0.0075 Score=43.15 Aligned_cols=24 Identities=25% Similarity=0.401 Sum_probs=21.1
Q ss_pred CCCceEEECCCCCcHHHHHHHHHH
Q psy6208 119 PPRGILLYGPPGTGKTLIARAVAN 142 (197)
Q Consensus 119 ~~~~ill~G~~GtGKT~la~ala~ 142 (197)
....|++.|++|+|||+|+.++..
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 455799999999999999999965
No 397
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=95.76 E-value=0.0058 Score=43.56 Aligned_cols=22 Identities=41% Similarity=0.653 Sum_probs=19.6
Q ss_pred CceEEECCCCCcHHHHHHHHHH
Q psy6208 121 RGILLYGPPGTGKTLIARAVAN 142 (197)
Q Consensus 121 ~~ill~G~~GtGKT~la~ala~ 142 (197)
..|++.|++|+|||+|+.++..
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~~ 26 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFAG 26 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHC
T ss_pred EEEEEECCCCccHHHHHHHHhc
Confidence 3589999999999999999964
No 398
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=95.76 E-value=0.0063 Score=43.08 Aligned_cols=23 Identities=26% Similarity=0.421 Sum_probs=20.5
Q ss_pred CceEEECCCCCcHHHHHHHHHHH
Q psy6208 121 RGILLYGPPGTGKTLIARAVANE 143 (197)
Q Consensus 121 ~~ill~G~~GtGKT~la~ala~~ 143 (197)
-.|++.|++|+|||+|+.++...
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 35899999999999999999764
No 399
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=95.76 E-value=0.0071 Score=46.18 Aligned_cols=27 Identities=26% Similarity=0.224 Sum_probs=22.7
Q ss_pred CCceEEECCCCCcHHHHHHHHHHHhCC
Q psy6208 120 PRGILLYGPPGTGKTLIARAVANETGA 146 (197)
Q Consensus 120 ~~~ill~G~~GtGKT~la~ala~~~~~ 146 (197)
+.-|.|.|++|+|||++++.+++.++.
T Consensus 21 ~~~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 21 SMFITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 445788999999999999999987643
No 400
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=95.75 E-value=0.0051 Score=46.85 Aligned_cols=31 Identities=26% Similarity=0.320 Sum_probs=24.0
Q ss_pred CCceEEECCCCCcHHHHHHHHHHHhCCeEEEE
Q psy6208 120 PRGILLYGPPGTGKTLIARAVANETGAFFFLI 151 (197)
Q Consensus 120 ~~~ill~G~~GtGKT~la~ala~~~~~~~~~v 151 (197)
+.-+.|.|+.|+||||+++.++.. +..+...
T Consensus 20 g~~i~i~G~~GsGKSTl~~~L~~~-~g~v~~~ 50 (230)
T 2vp4_A 20 PFTVLIEGNIGSGKTTYLNHFEKY-KNDICLL 50 (230)
T ss_dssp CEEEEEECSTTSCHHHHHHTTGGG-TTTEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHhc-cCCeEEE
Confidence 345789999999999999999887 4444433
No 401
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=95.74 E-value=0.0062 Score=50.98 Aligned_cols=27 Identities=30% Similarity=0.359 Sum_probs=21.7
Q ss_pred CCCCCc--eEEECCCCCcHHHHHHHHHHH
Q psy6208 117 VKPPRG--ILLYGPPGTGKTLIARAVANE 143 (197)
Q Consensus 117 ~~~~~~--ill~G~~GtGKT~la~ala~~ 143 (197)
+..+.. +.|.||+|+|||||+++|+..
T Consensus 37 i~~Gei~~vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 37 VSQGFCFNILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp CC-CCEEEEEEECSTTSSSHHHHHHHHTS
T ss_pred ecCCCeeEEEEECCCCCCHHHHHHHHhCc
Confidence 344555 889999999999999999764
No 402
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=95.74 E-value=0.0065 Score=43.07 Aligned_cols=23 Identities=22% Similarity=0.271 Sum_probs=20.4
Q ss_pred CceEEECCCCCcHHHHHHHHHHH
Q psy6208 121 RGILLYGPPGTGKTLIARAVANE 143 (197)
Q Consensus 121 ~~ill~G~~GtGKT~la~ala~~ 143 (197)
..|++.|++|+|||+|+.++...
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46899999999999999999754
No 403
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=95.73 E-value=0.0064 Score=43.47 Aligned_cols=23 Identities=22% Similarity=0.405 Sum_probs=20.2
Q ss_pred CceEEECCCCCcHHHHHHHHHHH
Q psy6208 121 RGILLYGPPGTGKTLIARAVANE 143 (197)
Q Consensus 121 ~~ill~G~~GtGKT~la~ala~~ 143 (197)
..|++.|++|+|||+|+.++...
T Consensus 8 ~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 8 FKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35899999999999999999753
No 404
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=95.71 E-value=0.0075 Score=42.78 Aligned_cols=25 Identities=32% Similarity=0.368 Sum_probs=21.4
Q ss_pred CCCceEEECCCCCcHHHHHHHHHHH
Q psy6208 119 PPRGILLYGPPGTGKTLIARAVANE 143 (197)
Q Consensus 119 ~~~~ill~G~~GtGKT~la~ala~~ 143 (197)
....|++.|++|+|||+|+.++...
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CccEEEEECCCCCCHHHHHHHHhcC
Confidence 3456999999999999999999753
No 405
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=95.71 E-value=0.0066 Score=43.48 Aligned_cols=24 Identities=25% Similarity=0.466 Sum_probs=20.8
Q ss_pred CCceEEECCCCCcHHHHHHHHHHH
Q psy6208 120 PRGILLYGPPGTGKTLIARAVANE 143 (197)
Q Consensus 120 ~~~ill~G~~GtGKT~la~ala~~ 143 (197)
...|++.|++|+|||+|+.++...
T Consensus 8 ~~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 8 ILKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 346999999999999999998754
No 406
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=95.71 E-value=0.008 Score=48.94 Aligned_cols=29 Identities=21% Similarity=0.329 Sum_probs=25.1
Q ss_pred CCCCceEEECCCCCcHHHHHHHHHHHhCC
Q psy6208 118 KPPRGILLYGPPGTGKTLIARAVANETGA 146 (197)
Q Consensus 118 ~~~~~ill~G~~GtGKT~la~ala~~~~~ 146 (197)
..+..+.|.||+|+|||+|++.|+.....
T Consensus 69 ~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~ 97 (347)
T 2obl_A 69 GIGQRIGIFAGSGVGKSTLLGMICNGASA 97 (347)
T ss_dssp ETTCEEEEEECTTSSHHHHHHHHHHHSCC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 45667899999999999999999998754
No 407
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=95.68 E-value=0.0033 Score=46.64 Aligned_cols=26 Identities=15% Similarity=0.231 Sum_probs=21.8
Q ss_pred CCCCCceEEECCCCCcHHHHHHHHHH
Q psy6208 117 VKPPRGILLYGPPGTGKTLIARAVAN 142 (197)
Q Consensus 117 ~~~~~~ill~G~~GtGKT~la~ala~ 142 (197)
......+.|.|++|+|||+|+++++.
T Consensus 23 ~~~~~~v~lvG~~g~GKSTLl~~l~g 48 (210)
T 1pui_A 23 SDTGIEVAFAGRSNAGKSSALNTLTN 48 (210)
T ss_dssp CSCSEEEEEEECTTSSHHHHHTTTCC
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhC
Confidence 45556699999999999999998864
No 408
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=95.67 E-value=0.007 Score=42.71 Aligned_cols=22 Identities=18% Similarity=0.436 Sum_probs=19.9
Q ss_pred ceEEECCCCCcHHHHHHHHHHH
Q psy6208 122 GILLYGPPGTGKTLIARAVANE 143 (197)
Q Consensus 122 ~ill~G~~GtGKT~la~ala~~ 143 (197)
.+++.|++|+|||+|+.++...
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999764
No 409
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=95.67 E-value=0.0062 Score=43.13 Aligned_cols=22 Identities=32% Similarity=0.542 Sum_probs=19.7
Q ss_pred ceEEECCCCCcHHHHHHHHHHH
Q psy6208 122 GILLYGPPGTGKTLIARAVANE 143 (197)
Q Consensus 122 ~ill~G~~GtGKT~la~ala~~ 143 (197)
.|++.|++|+|||+|+.++...
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5899999999999999999753
No 410
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=95.67 E-value=0.0085 Score=48.11 Aligned_cols=24 Identities=29% Similarity=0.468 Sum_probs=21.8
Q ss_pred CCceEEECCCCCcHHHHHHHHHHH
Q psy6208 120 PRGILLYGPPGTGKTLIARAVANE 143 (197)
Q Consensus 120 ~~~ill~G~~GtGKT~la~ala~~ 143 (197)
..+++|.|++|+|||+++.++...
T Consensus 144 g~~vl~~G~sG~GKSt~a~~l~~~ 167 (314)
T 1ko7_A 144 GVGVLITGDSGIGKSETALELIKR 167 (314)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHT
T ss_pred CEEEEEEeCCCCCHHHHHHHHHhc
Confidence 568999999999999999999875
No 411
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=95.66 E-value=0.0071 Score=42.74 Aligned_cols=22 Identities=18% Similarity=0.329 Sum_probs=19.9
Q ss_pred CceEEECCCCCcHHHHHHHHHH
Q psy6208 121 RGILLYGPPGTGKTLIARAVAN 142 (197)
Q Consensus 121 ~~ill~G~~GtGKT~la~ala~ 142 (197)
..|++.|++|+|||+|+.++..
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHc
Confidence 3589999999999999999976
No 412
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=95.64 E-value=0.0096 Score=53.78 Aligned_cols=22 Identities=41% Similarity=0.687 Sum_probs=17.9
Q ss_pred CceEEECCCCCcHHHHHHHHHH
Q psy6208 121 RGILLYGPPGTGKTLIARAVAN 142 (197)
Q Consensus 121 ~~ill~G~~GtGKT~la~ala~ 142 (197)
...+|.||||||||+++..+..
T Consensus 376 ~~~lI~GppGTGKT~~i~~~i~ 397 (802)
T 2xzl_A 376 PLSLIQGPPGTGKTVTSATIVY 397 (802)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHHHHH
Confidence 3579999999999998776644
No 413
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=95.63 E-value=0.0067 Score=43.96 Aligned_cols=23 Identities=39% Similarity=0.551 Sum_probs=20.4
Q ss_pred CceEEECCCCCcHHHHHHHHHHH
Q psy6208 121 RGILLYGPPGTGKTLIARAVANE 143 (197)
Q Consensus 121 ~~ill~G~~GtGKT~la~ala~~ 143 (197)
..+.|.|++|+|||+|+.+++..
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 35899999999999999999863
No 414
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=95.63 E-value=0.019 Score=44.56 Aligned_cols=22 Identities=41% Similarity=0.587 Sum_probs=19.7
Q ss_pred ceEEECCCCCcHHHHHHHHHHH
Q psy6208 122 GILLYGPPGTGKTLIARAVANE 143 (197)
Q Consensus 122 ~ill~G~~GtGKT~la~ala~~ 143 (197)
.|.|.|.||+|||+|..++...
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~ 24 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNA 24 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 5899999999999999999654
No 415
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=95.63 E-value=0.0074 Score=42.55 Aligned_cols=22 Identities=32% Similarity=0.344 Sum_probs=19.6
Q ss_pred ceEEECCCCCcHHHHHHHHHHH
Q psy6208 122 GILLYGPPGTGKTLIARAVANE 143 (197)
Q Consensus 122 ~ill~G~~GtGKT~la~ala~~ 143 (197)
.+++.|++|+|||+|+.++...
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999754
No 416
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=95.63 E-value=0.031 Score=47.43 Aligned_cols=23 Identities=26% Similarity=0.648 Sum_probs=18.4
Q ss_pred CceEEECCCCCcHHHHHHHHHHH
Q psy6208 121 RGILLYGPPGTGKTLIARAVANE 143 (197)
Q Consensus 121 ~~ill~G~~GtGKT~la~ala~~ 143 (197)
..+++.+|+|+|||..+-..+..
T Consensus 23 ~~~l~~~~tGsGKT~~~~~~~~~ 45 (556)
T 4a2p_A 23 KNALICAPTGSGKTFVSILICEH 45 (556)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEcCCCChHHHHHHHHHHH
Confidence 46999999999999876655433
No 417
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=95.62 E-value=0.0071 Score=42.82 Aligned_cols=21 Identities=19% Similarity=0.477 Sum_probs=19.5
Q ss_pred ceEEECCCCCcHHHHHHHHHH
Q psy6208 122 GILLYGPPGTGKTLIARAVAN 142 (197)
Q Consensus 122 ~ill~G~~GtGKT~la~ala~ 142 (197)
.|++.|++|+|||+|+.++..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999999999975
No 418
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=95.61 E-value=0.0073 Score=43.69 Aligned_cols=23 Identities=26% Similarity=0.352 Sum_probs=20.5
Q ss_pred CceEEECCCCCcHHHHHHHHHHH
Q psy6208 121 RGILLYGPPGTGKTLIARAVANE 143 (197)
Q Consensus 121 ~~ill~G~~GtGKT~la~ala~~ 143 (197)
..|+|.|++|+|||+|+.++...
T Consensus 12 ~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 12 IKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999999863
No 419
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=95.61 E-value=0.007 Score=42.91 Aligned_cols=20 Identities=30% Similarity=0.604 Sum_probs=18.4
Q ss_pred ceEEECCCCCcHHHHHHHHH
Q psy6208 122 GILLYGPPGTGKTLIARAVA 141 (197)
Q Consensus 122 ~ill~G~~GtGKT~la~ala 141 (197)
.|++.|++|+|||+|+.++.
T Consensus 4 ki~ivG~~~~GKSsli~~l~ 23 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFG 23 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 48999999999999999985
No 420
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=95.58 E-value=0.021 Score=52.56 Aligned_cols=39 Identities=26% Similarity=0.345 Sum_probs=27.9
Q ss_pred CCceEEECCCCCcHHHHHHHHHHHh---CC--eEEEEechhhhh
Q psy6208 120 PRGILLYGPPGTGKTLIARAVANET---GA--FFFLINGPEIMS 158 (197)
Q Consensus 120 ~~~ill~G~~GtGKT~la~ala~~~---~~--~~~~v~~~~~~~ 158 (197)
..+++|.+++|+|||..+-+++..+ +. +++.+....+..
T Consensus 170 ~~~~LLad~tGlGKTi~Ai~~i~~l~~~g~~~rvLIVvP~sLl~ 213 (968)
T 3dmq_A 170 APRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIIVPETLQH 213 (968)
T ss_dssp SCEEEECCCTTSCHHHHHHHHHHHHHHTSSCCCEEEECCTTTHH
T ss_pred CCCEEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEeCHHHHH
Confidence 5678999999999999888776654 32 566665445443
No 421
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=95.57 E-value=0.0089 Score=45.23 Aligned_cols=24 Identities=29% Similarity=0.398 Sum_probs=21.6
Q ss_pred CceEEECCCCCcHHHHHHHHHHHh
Q psy6208 121 RGILLYGPPGTGKTLIARAVANET 144 (197)
Q Consensus 121 ~~ill~G~~GtGKT~la~ala~~~ 144 (197)
.-|.|.|++|+|||+.++.+++.+
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l 27 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETL 27 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 357899999999999999999877
No 422
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=95.56 E-value=0.024 Score=44.01 Aligned_cols=22 Identities=32% Similarity=0.430 Sum_probs=19.8
Q ss_pred CceEEECCCCCcHHHHHHHHHH
Q psy6208 121 RGILLYGPPGTGKTLIARAVAN 142 (197)
Q Consensus 121 ~~ill~G~~GtGKT~la~ala~ 142 (197)
..|+|.|+||+|||+|..++..
T Consensus 6 ~kI~lvG~~nvGKTsL~n~l~g 27 (258)
T 3a1s_A 6 VKVALAGCPNVGKTSLFNALTG 27 (258)
T ss_dssp EEEEEECCTTSSHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHC
Confidence 3589999999999999999975
No 423
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=95.56 E-value=0.0062 Score=43.08 Aligned_cols=20 Identities=45% Similarity=0.848 Sum_probs=18.5
Q ss_pred ceEEECCCCCcHHHHHHHHH
Q psy6208 122 GILLYGPPGTGKTLIARAVA 141 (197)
Q Consensus 122 ~ill~G~~GtGKT~la~ala 141 (197)
.+++.|++|+|||+|++++.
T Consensus 4 ki~~vG~~~~GKSsli~~l~ 23 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFG 23 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHc
Confidence 58999999999999999985
No 424
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=95.55 E-value=0.0082 Score=42.86 Aligned_cols=23 Identities=17% Similarity=0.358 Sum_probs=20.5
Q ss_pred CceEEECCCCCcHHHHHHHHHHH
Q psy6208 121 RGILLYGPPGTGKTLIARAVANE 143 (197)
Q Consensus 121 ~~ill~G~~GtGKT~la~ala~~ 143 (197)
..|++.|++|+|||+|+.++...
T Consensus 16 ~~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 16 FKYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 45999999999999999999764
No 425
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=95.53 E-value=0.0084 Score=43.26 Aligned_cols=23 Identities=17% Similarity=0.417 Sum_probs=20.4
Q ss_pred CceEEECCCCCcHHHHHHHHHHH
Q psy6208 121 RGILLYGPPGTGKTLIARAVANE 143 (197)
Q Consensus 121 ~~ill~G~~GtGKT~la~ala~~ 143 (197)
-.|++.|++|+|||+|+.++...
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 35899999999999999999764
No 426
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=95.51 E-value=0.016 Score=48.02 Aligned_cols=35 Identities=20% Similarity=0.468 Sum_probs=27.4
Q ss_pred CCCCCceEEECCCCCcHHHHHHHHHHHh-----CCeEEEE
Q psy6208 117 VKPPRGILLYGPPGTGKTLIARAVANET-----GAFFFLI 151 (197)
Q Consensus 117 ~~~~~~ill~G~~GtGKT~la~ala~~~-----~~~~~~v 151 (197)
+.....++|.||+|+|||+|++.+++.. +..++++
T Consensus 171 i~rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~~I~~ 210 (422)
T 3ice_A 171 IGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVL 210 (422)
T ss_dssp CBTTCEEEEECCSSSSHHHHHHHHHHHHHHHCTTSEEEEE
T ss_pred ecCCcEEEEecCCCCChhHHHHHHHHHHhhcCCCeeEEEE
Confidence 4556779999999999999999998754 4445554
No 427
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=95.50 E-value=0.0078 Score=43.06 Aligned_cols=23 Identities=17% Similarity=0.377 Sum_probs=20.6
Q ss_pred CceEEECCCCCcHHHHHHHHHHH
Q psy6208 121 RGILLYGPPGTGKTLIARAVANE 143 (197)
Q Consensus 121 ~~ill~G~~GtGKT~la~ala~~ 143 (197)
..|++.|++|+|||+|+.++...
T Consensus 10 ~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 10 HKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 45899999999999999999765
No 428
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=95.50 E-value=0.0087 Score=43.56 Aligned_cols=24 Identities=21% Similarity=0.362 Sum_probs=21.2
Q ss_pred CCceEEECCCCCcHHHHHHHHHHH
Q psy6208 120 PRGILLYGPPGTGKTLIARAVANE 143 (197)
Q Consensus 120 ~~~ill~G~~GtGKT~la~ala~~ 143 (197)
...|++.|++|+|||+|+.++...
T Consensus 7 ~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 7 SYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 346899999999999999999865
No 429
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=95.49 E-value=0.0077 Score=42.99 Aligned_cols=23 Identities=17% Similarity=0.302 Sum_probs=20.2
Q ss_pred CceEEECCCCCcHHHHHHHHHHH
Q psy6208 121 RGILLYGPPGTGKTLIARAVANE 143 (197)
Q Consensus 121 ~~ill~G~~GtGKT~la~ala~~ 143 (197)
..|++.|++|+|||+|+.++...
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35899999999999999999753
No 430
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=95.49 E-value=0.0087 Score=43.48 Aligned_cols=22 Identities=18% Similarity=0.450 Sum_probs=20.0
Q ss_pred ceEEECCCCCcHHHHHHHHHHH
Q psy6208 122 GILLYGPPGTGKTLIARAVANE 143 (197)
Q Consensus 122 ~ill~G~~GtGKT~la~ala~~ 143 (197)
.|++.|++|+|||+|+.++...
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5899999999999999999764
No 431
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=95.49 E-value=0.0087 Score=43.63 Aligned_cols=23 Identities=26% Similarity=0.421 Sum_probs=20.4
Q ss_pred CceEEECCCCCcHHHHHHHHHHH
Q psy6208 121 RGILLYGPPGTGKTLIARAVANE 143 (197)
Q Consensus 121 ~~ill~G~~GtGKT~la~ala~~ 143 (197)
..|+|.|++|+|||+|+.++...
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 26 FKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 35899999999999999999764
No 432
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=95.47 E-value=0.0085 Score=42.85 Aligned_cols=22 Identities=27% Similarity=0.421 Sum_probs=19.7
Q ss_pred CceEEECCCCCcHHHHHHHHHH
Q psy6208 121 RGILLYGPPGTGKTLIARAVAN 142 (197)
Q Consensus 121 ~~ill~G~~GtGKT~la~ala~ 142 (197)
..+++.|++|+|||+|+.++..
T Consensus 7 ~ki~v~G~~~~GKssl~~~l~~ 28 (178)
T 2hxs_A 7 LKIVVLGDGASGKTSLTTCFAQ 28 (178)
T ss_dssp EEEEEECCTTSSHHHHHHHHHG
T ss_pred EEEEEECcCCCCHHHHHHHHHh
Confidence 4589999999999999999864
No 433
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=95.47 E-value=0.0089 Score=42.99 Aligned_cols=23 Identities=17% Similarity=0.449 Sum_probs=20.5
Q ss_pred CceEEECCCCCcHHHHHHHHHHH
Q psy6208 121 RGILLYGPPGTGKTLIARAVANE 143 (197)
Q Consensus 121 ~~ill~G~~GtGKT~la~ala~~ 143 (197)
..|++.|++|+|||+|+.++...
T Consensus 19 ~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhhC
Confidence 45999999999999999999764
No 434
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=95.47 E-value=0.008 Score=43.01 Aligned_cols=22 Identities=27% Similarity=0.459 Sum_probs=19.6
Q ss_pred CceEEECCCCCcHHHHHHHHHH
Q psy6208 121 RGILLYGPPGTGKTLIARAVAN 142 (197)
Q Consensus 121 ~~ill~G~~GtGKT~la~ala~ 142 (197)
..|++.|++|+|||+|+.++..
T Consensus 10 ~~i~v~G~~~~GKssl~~~l~~ 31 (181)
T 3tw8_B 10 FKLLIIGDSGVGKSSLLLRFAD 31 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHCS
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 4689999999999999999854
No 435
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=95.47 E-value=0.0092 Score=42.79 Aligned_cols=23 Identities=22% Similarity=0.453 Sum_probs=20.3
Q ss_pred CceEEECCCCCcHHHHHHHHHHH
Q psy6208 121 RGILLYGPPGTGKTLIARAVANE 143 (197)
Q Consensus 121 ~~ill~G~~GtGKT~la~ala~~ 143 (197)
..|++.|++|+|||+|+.++...
T Consensus 13 ~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 13 AKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 35899999999999999999764
No 436
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=95.46 E-value=0.008 Score=43.58 Aligned_cols=24 Identities=25% Similarity=0.374 Sum_probs=20.9
Q ss_pred CCceEEECCCCCcHHHHHHHHHHH
Q psy6208 120 PRGILLYGPPGTGKTLIARAVANE 143 (197)
Q Consensus 120 ~~~ill~G~~GtGKT~la~ala~~ 143 (197)
...+++.|++|+|||+|+.++...
T Consensus 7 ~~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 7 KCKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHhcC
Confidence 345899999999999999999764
No 437
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=95.45 E-value=0.0075 Score=43.47 Aligned_cols=23 Identities=26% Similarity=0.515 Sum_probs=20.5
Q ss_pred CceEEECCCCCcHHHHHHHHHHH
Q psy6208 121 RGILLYGPPGTGKTLIARAVANE 143 (197)
Q Consensus 121 ~~ill~G~~GtGKT~la~ala~~ 143 (197)
..+.|.|++|+|||+|+.+++..
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 45899999999999999999864
No 438
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=95.44 E-value=0.0093 Score=44.62 Aligned_cols=24 Identities=25% Similarity=0.306 Sum_probs=20.6
Q ss_pred CceEEECCCCCcHHHHHHHHHHHh
Q psy6208 121 RGILLYGPPGTGKTLIARAVANET 144 (197)
Q Consensus 121 ~~ill~G~~GtGKT~la~ala~~~ 144 (197)
.-.+|+||.|+|||+++.||.-.+
T Consensus 24 ~~~~I~G~NgsGKStil~ai~~~l 47 (203)
T 3qks_A 24 GINLIIGQNGSGKSSLLDAILVGL 47 (203)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHh
Confidence 346899999999999999997655
No 439
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.41 E-value=0.01 Score=43.49 Aligned_cols=24 Identities=17% Similarity=0.411 Sum_probs=21.2
Q ss_pred CCceEEECCCCCcHHHHHHHHHHH
Q psy6208 120 PRGILLYGPPGTGKTLIARAVANE 143 (197)
Q Consensus 120 ~~~ill~G~~GtGKT~la~ala~~ 143 (197)
...|++.|++|+|||+|+.++...
T Consensus 28 ~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 28 EVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 456999999999999999999764
No 440
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=95.41 E-value=0.0085 Score=43.25 Aligned_cols=23 Identities=26% Similarity=0.437 Sum_probs=20.4
Q ss_pred CceEEECCCCCcHHHHHHHHHHH
Q psy6208 121 RGILLYGPPGTGKTLIARAVANE 143 (197)
Q Consensus 121 ~~ill~G~~GtGKT~la~ala~~ 143 (197)
..|++.|++|+|||+|+.++...
T Consensus 11 ~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 11 FKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999999754
No 441
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=95.39 E-value=0.0099 Score=42.76 Aligned_cols=23 Identities=17% Similarity=0.215 Sum_probs=20.1
Q ss_pred CceEEECCCCCcHHHHHHHHHHH
Q psy6208 121 RGILLYGPPGTGKTLIARAVANE 143 (197)
Q Consensus 121 ~~ill~G~~GtGKT~la~ala~~ 143 (197)
-.|++.|++|+|||+|+.++...
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 35899999999999999999753
No 442
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=95.39 E-value=0.0099 Score=42.82 Aligned_cols=23 Identities=17% Similarity=0.348 Sum_probs=20.4
Q ss_pred CceEEECCCCCcHHHHHHHHHHH
Q psy6208 121 RGILLYGPPGTGKTLIARAVANE 143 (197)
Q Consensus 121 ~~ill~G~~GtGKT~la~ala~~ 143 (197)
..|++.|++|+|||+|+.++...
T Consensus 19 ~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 19 YKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 35899999999999999999864
No 443
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=95.38 E-value=0.0092 Score=43.47 Aligned_cols=24 Identities=25% Similarity=0.295 Sum_probs=20.9
Q ss_pred CCCceEEECCCCCcHHHHHHHHHH
Q psy6208 119 PPRGILLYGPPGTGKTLIARAVAN 142 (197)
Q Consensus 119 ~~~~ill~G~~GtGKT~la~ala~ 142 (197)
....+++.|++|+|||+|+.++..
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~ 45 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLIN 45 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 345699999999999999999964
No 444
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=95.38 E-value=0.025 Score=44.29 Aligned_cols=21 Identities=33% Similarity=0.547 Sum_probs=19.4
Q ss_pred ceEEECCCCCcHHHHHHHHHH
Q psy6208 122 GILLYGPPGTGKTLIARAVAN 142 (197)
Q Consensus 122 ~ill~G~~GtGKT~la~ala~ 142 (197)
.|.|.|+||+|||+|..++..
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g 25 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITG 25 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHC
Confidence 589999999999999999975
No 445
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=95.38 E-value=0.054 Score=42.32 Aligned_cols=54 Identities=20% Similarity=0.351 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHhcccChhhHhhhCCCCCCceEEECC-CCCcHHHHHHHHHHHh---CCeEEEEech
Q psy6208 92 RKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGP-PGTGKTLIARAVANET---GAFFFLINGP 154 (197)
Q Consensus 92 ~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ill~G~-~GtGKT~la~ala~~~---~~~~~~v~~~ 154 (197)
.+..+.++..+..... -...+.|+++|+ +|+|||+++..+|..+ |.+++.+++.
T Consensus 63 ~Ea~r~lrt~l~~~~~---------~~~~kvI~vts~kgG~GKTt~a~nLA~~lA~~G~rVLLID~D 120 (271)
T 3bfv_A 63 SEKFRGIRSNIMFANP---------DSAVQSIVITSEAPGAGKSTIAANLAVAYAQAGYKTLIVDGD 120 (271)
T ss_dssp HHHHHHHHHHHHHSST---------TCCCCEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred HHHHHHHHHHHHhhcc---------CCCCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCC
Confidence 4555666555543211 123456778865 8999999999887665 7788888753
No 446
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.37 E-value=0.01 Score=42.51 Aligned_cols=23 Identities=26% Similarity=0.411 Sum_probs=20.3
Q ss_pred CceEEECCCCCcHHHHHHHHHHH
Q psy6208 121 RGILLYGPPGTGKTLIARAVANE 143 (197)
Q Consensus 121 ~~ill~G~~GtGKT~la~ala~~ 143 (197)
..|++.|++|+|||+|+.++...
T Consensus 11 ~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 11 FKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 45899999999999999999753
No 447
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=95.37 E-value=0.02 Score=44.00 Aligned_cols=33 Identities=18% Similarity=0.254 Sum_probs=26.3
Q ss_pred CCceEEECCCCCcHHHHHHHHHHHh--CCeEEEEe
Q psy6208 120 PRGILLYGPPGTGKTLIARAVANET--GAFFFLIN 152 (197)
Q Consensus 120 ~~~ill~G~~GtGKT~la~ala~~~--~~~~~~v~ 152 (197)
...+++.|.+|+|||+++..++..+ +.++..++
T Consensus 14 ~~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd 48 (262)
T 1yrb_A 14 SMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVN 48 (262)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEE
T ss_pred eEEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEe
Confidence 3447899999999999999998765 55666665
No 448
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=95.35 E-value=0.011 Score=51.01 Aligned_cols=27 Identities=30% Similarity=0.434 Sum_probs=22.9
Q ss_pred CCCCceEEECCCCCcHHHHHHHHHHHh
Q psy6208 118 KPPRGILLYGPPGTGKTLIARAVANET 144 (197)
Q Consensus 118 ~~~~~ill~G~~GtGKT~la~ala~~~ 144 (197)
.++..+.|.||+|+|||||++.++...
T Consensus 45 ~~Ge~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 45 KEGMVVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp CTTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 456668999999999999999998643
No 449
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=95.34 E-value=0.011 Score=43.15 Aligned_cols=22 Identities=14% Similarity=0.229 Sum_probs=19.5
Q ss_pred ceEEECCCCCcHHHHHHHHHHH
Q psy6208 122 GILLYGPPGTGKTLIARAVANE 143 (197)
Q Consensus 122 ~ill~G~~GtGKT~la~ala~~ 143 (197)
.|+|.|++|+|||+|+..+...
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999888654
No 450
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=95.33 E-value=0.0067 Score=48.64 Aligned_cols=25 Identities=36% Similarity=0.452 Sum_probs=21.4
Q ss_pred CCCceEEECCCCCcHHHHHHHHHHH
Q psy6208 119 PPRGILLYGPPGTGKTLIARAVANE 143 (197)
Q Consensus 119 ~~~~ill~G~~GtGKT~la~ala~~ 143 (197)
...+++|.|++|+|||++|.++...
T Consensus 146 ~g~gvli~G~sG~GKStlal~l~~~ 170 (312)
T 1knx_A 146 FGVGVLLTGRSGIGKSECALDLINK 170 (312)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHHTT
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHc
Confidence 3567999999999999999988653
No 451
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=95.31 E-value=0.011 Score=42.97 Aligned_cols=24 Identities=29% Similarity=0.391 Sum_probs=20.5
Q ss_pred CceEEECCCCCcHHHHHHHHHHHh
Q psy6208 121 RGILLYGPPGTGKTLIARAVANET 144 (197)
Q Consensus 121 ~~ill~G~~GtGKT~la~ala~~~ 144 (197)
..|++.|++|+|||+|++.+....
T Consensus 15 ~ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 15 FKIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHTS
T ss_pred cEEEEECCCCCCHHHHHHHHHhhc
Confidence 358999999999999999887643
No 452
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=95.30 E-value=0.011 Score=43.06 Aligned_cols=23 Identities=30% Similarity=0.504 Sum_probs=20.5
Q ss_pred CceEEECCCCCcHHHHHHHHHHH
Q psy6208 121 RGILLYGPPGTGKTLIARAVANE 143 (197)
Q Consensus 121 ~~ill~G~~GtGKT~la~ala~~ 143 (197)
..|++.|++|+|||+|+.++...
T Consensus 17 ~ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 17 FKLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 35899999999999999999864
No 453
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=95.30 E-value=0.011 Score=43.07 Aligned_cols=22 Identities=18% Similarity=0.433 Sum_probs=19.8
Q ss_pred ceEEECCCCCcHHHHHHHHHHH
Q psy6208 122 GILLYGPPGTGKTLIARAVANE 143 (197)
Q Consensus 122 ~ill~G~~GtGKT~la~ala~~ 143 (197)
.|++.|++|+|||+|+..+...
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHhC
Confidence 5899999999999999998754
No 454
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=95.30 E-value=0.02 Score=42.68 Aligned_cols=30 Identities=27% Similarity=0.314 Sum_probs=24.9
Q ss_pred eEEECCCCCcHHHHHHHHHHHh---CCeEEEEe
Q psy6208 123 ILLYGPPGTGKTLIARAVANET---GAFFFLIN 152 (197)
Q Consensus 123 ill~G~~GtGKT~la~ala~~~---~~~~~~v~ 152 (197)
|.|-|+-|+||||.++.+++.+ |.+++...
T Consensus 3 I~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~tr 35 (197)
T 3hjn_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKR 35 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 5688999999999999999877 66666553
No 455
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=95.30 E-value=0.011 Score=43.50 Aligned_cols=24 Identities=21% Similarity=0.313 Sum_probs=20.8
Q ss_pred CCceEEECCCCCcHHHHHHHHHHH
Q psy6208 120 PRGILLYGPPGTGKTLIARAVANE 143 (197)
Q Consensus 120 ~~~ill~G~~GtGKT~la~ala~~ 143 (197)
...|++.|++|+|||+|+.++...
T Consensus 28 ~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 28 AYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CeEEEEECcCCCCHHHHHHHHHhC
Confidence 456999999999999999999753
No 456
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=95.30 E-value=0.011 Score=42.99 Aligned_cols=22 Identities=32% Similarity=0.424 Sum_probs=20.0
Q ss_pred ceEEECCCCCcHHHHHHHHHHH
Q psy6208 122 GILLYGPPGTGKTLIARAVANE 143 (197)
Q Consensus 122 ~ill~G~~GtGKT~la~ala~~ 143 (197)
.|++.|++|+|||+|+.++...
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999764
No 457
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=95.28 E-value=0.0099 Score=43.52 Aligned_cols=23 Identities=26% Similarity=0.406 Sum_probs=20.3
Q ss_pred CCceEEECCCCCcHHHHHHHHHH
Q psy6208 120 PRGILLYGPPGTGKTLIARAVAN 142 (197)
Q Consensus 120 ~~~ill~G~~GtGKT~la~ala~ 142 (197)
...+++.|++|+|||+|+.++..
T Consensus 23 ~~ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 23 HGKLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp -CEEEEEESTTSSHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 34699999999999999999986
No 458
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=95.27 E-value=0.014 Score=41.91 Aligned_cols=24 Identities=17% Similarity=0.116 Sum_probs=20.8
Q ss_pred CCceEEECCCCCcHHHHHHHHHHH
Q psy6208 120 PRGILLYGPPGTGKTLIARAVANE 143 (197)
Q Consensus 120 ~~~ill~G~~GtGKT~la~ala~~ 143 (197)
...+++.|++|+|||+|+.++...
T Consensus 8 ~~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 8 FIKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 456999999999999999999753
No 459
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=95.27 E-value=0.056 Score=43.36 Aligned_cols=64 Identities=16% Similarity=0.035 Sum_probs=41.1
Q ss_pred CCCceEEECCCCCcHHHHHHHHHHHh---CC-e--EEEEechhhhhhccCccHHHHHHHHHHH----hcCCCeEEEEccc
Q psy6208 119 PPRGILLYGPPGTGKTLIARAVANET---GA-F--FFLINGPEIMSKLAGESESNLRKAFEEA----DKNSPSIIFIDEL 188 (197)
Q Consensus 119 ~~~~ill~G~~GtGKT~la~ala~~~---~~-~--~~~v~~~~~~~~~~~~~~~~~~~~~~~a----~~~~~~vl~lDei 188 (197)
..+.+||+||.|.||+..++++++.+ +. + .+.++. ...++.+.+.+ .-+...|++|||+
T Consensus 17 ~~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-----------~~~~~~l~~~~~~~plf~~~kvvii~~~ 85 (343)
T 1jr3_D 17 LRAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSIDP-----------NTDWNAIFSLCQAMSLFASRQTLLLLLP 85 (343)
T ss_dssp CCSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEECCT-----------TCCHHHHHHHHHHHHHCCSCEEEEEECC
T ss_pred CCcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEEecC-----------CCCHHHHHHHhcCcCCccCCeEEEEECC
Confidence 35579999999999999999998865 22 2 222221 01223333332 2345689999999
Q ss_pred Cc-cCc
Q psy6208 189 DA-IAP 193 (197)
Q Consensus 189 d~-l~~ 193 (197)
|. +..
T Consensus 86 ~~kl~~ 91 (343)
T 1jr3_D 86 ENGPNA 91 (343)
T ss_dssp SSCCCT
T ss_pred CCCCCh
Confidence 98 654
No 460
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=95.27 E-value=0.2 Score=46.97 Aligned_cols=33 Identities=24% Similarity=0.161 Sum_probs=22.7
Q ss_pred CCceEEECCCCCcHHHHHHHHHHH---hCCeEEEEe
Q psy6208 120 PRGILLYGPPGTGKTLIARAVANE---TGAFFFLIN 152 (197)
Q Consensus 120 ~~~ill~G~~GtGKT~la~ala~~---~~~~~~~v~ 152 (197)
+..++++||+|+|||..+-..+-. .+..++.+.
T Consensus 624 p~d~ll~~~TGsGKT~val~aa~~~~~~g~~vlvlv 659 (1151)
T 2eyq_A 624 AMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLV 659 (1151)
T ss_dssp CCEEEEECCCCTTTHHHHHHHHHHHHTTTCEEEEEC
T ss_pred cCcEEEECCCCCCHHHHHHHHHHHHHHhCCeEEEEe
Confidence 457999999999999876533322 255555554
No 461
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=95.26 E-value=0.011 Score=43.33 Aligned_cols=23 Identities=17% Similarity=0.449 Sum_probs=20.3
Q ss_pred CceEEECCCCCcHHHHHHHHHHH
Q psy6208 121 RGILLYGPPGTGKTLIARAVANE 143 (197)
Q Consensus 121 ~~ill~G~~GtGKT~la~ala~~ 143 (197)
..|++.|++|+|||+|+.++...
T Consensus 15 ~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 15 HKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 45899999999999999999754
No 462
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=95.26 E-value=0.04 Score=43.05 Aligned_cols=23 Identities=30% Similarity=0.427 Sum_probs=20.3
Q ss_pred CceEEECCCCCcHHHHHHHHHHH
Q psy6208 121 RGILLYGPPGTGKTLIARAVANE 143 (197)
Q Consensus 121 ~~ill~G~~GtGKT~la~ala~~ 143 (197)
..|.|.|.+|+|||+|..++...
T Consensus 4 ~~I~lvG~~n~GKSTLin~l~g~ 26 (274)
T 3i8s_A 4 LTIGLIGNPNSGKTTLFNQLTGS 26 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTT
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999753
No 463
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=95.24 E-value=0.012 Score=43.32 Aligned_cols=24 Identities=25% Similarity=0.451 Sum_probs=20.9
Q ss_pred CCceEEECCCCCcHHHHHHHHHHH
Q psy6208 120 PRGILLYGPPGTGKTLIARAVANE 143 (197)
Q Consensus 120 ~~~ill~G~~GtGKT~la~ala~~ 143 (197)
...|++.|++|+|||+|+.++...
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 8 LLKVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 346899999999999999999764
No 464
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=95.24 E-value=0.012 Score=50.06 Aligned_cols=27 Identities=19% Similarity=0.176 Sum_probs=23.2
Q ss_pred CCCCCceEEECCCCCcHHHHHHHHHHHh
Q psy6208 117 VKPPRGILLYGPPGTGKTLIARAVANET 144 (197)
Q Consensus 117 ~~~~~~ill~G~~GtGKT~la~ala~~~ 144 (197)
+.. ..+.|.||+|+|||||+++++...
T Consensus 27 i~~-e~~~liG~nGsGKSTLl~~l~Gl~ 53 (483)
T 3euj_A 27 FDE-LVTTLSGGNGAGKSTTMAGFVTAL 53 (483)
T ss_dssp CCS-SEEEEECCTTSSHHHHHHHHHHHH
T ss_pred Ecc-ceEEEECCCCCcHHHHHHHHhcCC
Confidence 345 678899999999999999998765
No 465
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=95.23 E-value=0.0089 Score=43.23 Aligned_cols=22 Identities=18% Similarity=0.389 Sum_probs=19.6
Q ss_pred ceEEECCCCCcHHHHHHHHHHH
Q psy6208 122 GILLYGPPGTGKTLIARAVANE 143 (197)
Q Consensus 122 ~ill~G~~GtGKT~la~ala~~ 143 (197)
.|++.|++|+|||+|+.++...
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 4899999999999999999753
No 466
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=95.23 E-value=0.011 Score=42.85 Aligned_cols=24 Identities=21% Similarity=0.336 Sum_probs=20.8
Q ss_pred CCceEEECCCCCcHHHHHHHHHHH
Q psy6208 120 PRGILLYGPPGTGKTLIARAVANE 143 (197)
Q Consensus 120 ~~~ill~G~~GtGKT~la~ala~~ 143 (197)
...|++.|++|+|||+|+.++...
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 23 KGEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp TCEEEEEEBTTSSHHHHHHHHHTS
T ss_pred CeEEEEECCCCCCHHHHHHHHHcC
Confidence 346999999999999999999754
No 467
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=95.23 E-value=0.012 Score=42.75 Aligned_cols=23 Identities=22% Similarity=0.314 Sum_probs=20.3
Q ss_pred CceEEECCCCCcHHHHHHHHHHH
Q psy6208 121 RGILLYGPPGTGKTLIARAVANE 143 (197)
Q Consensus 121 ~~ill~G~~GtGKT~la~ala~~ 143 (197)
..|++.|++|+|||+|+.++...
T Consensus 21 ~ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 21 FKIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 45999999999999999999753
No 468
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=95.22 E-value=0.06 Score=46.05 Aligned_cols=33 Identities=24% Similarity=0.297 Sum_probs=21.5
Q ss_pred CCceEEECCCCCcHHHHHHHHHHHhCCeEEEEe
Q psy6208 120 PRGILLYGPPGTGKTLIARAVANETGAFFFLIN 152 (197)
Q Consensus 120 ~~~ill~G~~GtGKT~la~ala~~~~~~~~~v~ 152 (197)
...+++.+|+|+|||.....-+-..+...+.+.
T Consensus 40 g~d~lv~apTGsGKTl~~~lp~l~~~g~~lvi~ 72 (523)
T 1oyw_A 40 GRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVS 72 (523)
T ss_dssp TCCEEEECSCHHHHHHHHHHHHHHSSSEEEEEC
T ss_pred CCCEEEECCCCcHHHHHHHHHHHHhCCCEEEEC
Confidence 357999999999999855544333333444443
No 469
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=95.22 E-value=0.012 Score=48.21 Aligned_cols=22 Identities=27% Similarity=0.454 Sum_probs=19.4
Q ss_pred ceEEECCCCCcHHHHHHHHHHH
Q psy6208 122 GILLYGPPGTGKTLIARAVANE 143 (197)
Q Consensus 122 ~ill~G~~GtGKT~la~ala~~ 143 (197)
-.+|+||+|+|||++..+|+-.
T Consensus 25 ~~~i~G~NGaGKTTll~ai~~a 46 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLFEAISFA 46 (365)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4679999999999999999754
No 470
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=95.22 E-value=0.021 Score=42.80 Aligned_cols=30 Identities=27% Similarity=0.339 Sum_probs=24.7
Q ss_pred ceEEECCCCCcHHHHHHHHHHHh--CCeEEEE
Q psy6208 122 GILLYGPPGTGKTLIARAVANET--GAFFFLI 151 (197)
Q Consensus 122 ~ill~G~~GtGKT~la~ala~~~--~~~~~~v 151 (197)
-|.|-|+.|+||||+++.+++.+ +.+++..
T Consensus 4 FI~~EG~dGsGKsTq~~~L~~~L~~~~~v~~~ 35 (205)
T 4hlc_A 4 FITFEGPEGSGKTTVINEVYHRLVKDYDVIMT 35 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTTTSCEEEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHCCCCEEEe
Confidence 47889999999999999999987 4555544
No 471
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=95.21 E-value=0.012 Score=42.88 Aligned_cols=22 Identities=18% Similarity=0.437 Sum_probs=19.7
Q ss_pred ceEEECCCCCcHHHHHHHHHHH
Q psy6208 122 GILLYGPPGTGKTLIARAVANE 143 (197)
Q Consensus 122 ~ill~G~~GtGKT~la~ala~~ 143 (197)
.|++.|++|+|||+|+.++...
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4899999999999999999753
No 472
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=95.21 E-value=0.014 Score=43.04 Aligned_cols=24 Identities=29% Similarity=0.407 Sum_probs=17.8
Q ss_pred CCceEEECCCCCcHHHHHH-HHHHH
Q psy6208 120 PRGILLYGPPGTGKTLIAR-AVANE 143 (197)
Q Consensus 120 ~~~ill~G~~GtGKT~la~-ala~~ 143 (197)
...+++.+|+|+|||..+- .+...
T Consensus 38 ~~~~li~~~TGsGKT~~~~~~~~~~ 62 (207)
T 2gxq_A 38 GKDLIGQARTGTGKTLAFALPIAER 62 (207)
T ss_dssp TCCEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCEEEECCCCChHHHHHHHHHHHH
Confidence 4579999999999998643 33343
No 473
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=95.21 E-value=0.012 Score=48.09 Aligned_cols=25 Identities=24% Similarity=0.328 Sum_probs=21.2
Q ss_pred CCceEEECCCCCcHHHHHHHHHHHh
Q psy6208 120 PRGILLYGPPGTGKTLIARAVANET 144 (197)
Q Consensus 120 ~~~ill~G~~GtGKT~la~ala~~~ 144 (197)
...+.|.||+|+|||+|+++|+...
T Consensus 215 G~~~~lvG~sG~GKSTLln~L~g~~ 239 (358)
T 2rcn_A 215 GRISIFAGQSGVGKSSLLNALLGLQ 239 (358)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHCCS
T ss_pred CCEEEEECCCCccHHHHHHHHhccc
Confidence 3458899999999999999998644
No 474
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=95.20 E-value=0.012 Score=42.79 Aligned_cols=23 Identities=26% Similarity=0.315 Sum_probs=20.4
Q ss_pred CceEEECCCCCcHHHHHHHHHHH
Q psy6208 121 RGILLYGPPGTGKTLIARAVANE 143 (197)
Q Consensus 121 ~~ill~G~~GtGKT~la~ala~~ 143 (197)
..|++.|++|+|||+|+.++...
T Consensus 23 ~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 23 MELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHcC
Confidence 45899999999999999999753
No 475
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=95.19 E-value=0.012 Score=42.65 Aligned_cols=23 Identities=26% Similarity=0.486 Sum_probs=20.5
Q ss_pred CceEEECCCCCcHHHHHHHHHHH
Q psy6208 121 RGILLYGPPGTGKTLIARAVANE 143 (197)
Q Consensus 121 ~~ill~G~~GtGKT~la~ala~~ 143 (197)
..|++.|++|+|||+|+.++...
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35999999999999999999764
No 476
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.18 E-value=0.012 Score=42.95 Aligned_cols=23 Identities=30% Similarity=0.424 Sum_probs=20.6
Q ss_pred ceEEECCCCCcHHHHHHHHHHHh
Q psy6208 122 GILLYGPPGTGKTLIARAVANET 144 (197)
Q Consensus 122 ~ill~G~~GtGKT~la~ala~~~ 144 (197)
.|+|.|++|+|||+|+.++....
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 59999999999999999998654
No 477
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=95.18 E-value=0.018 Score=48.00 Aligned_cols=34 Identities=32% Similarity=0.652 Sum_probs=26.9
Q ss_pred CCceEEECCCCCcHHHHHHHHHHHh---CCeEEEEec
Q psy6208 120 PRGILLYGPPGTGKTLIARAVANET---GAFFFLING 153 (197)
Q Consensus 120 ~~~ill~G~~GtGKT~la~ala~~~---~~~~~~v~~ 153 (197)
..++++.|++|+|||++++.+...+ +.+++.++.
T Consensus 53 ~~h~~i~G~tGsGKs~~~~~li~~~~~~g~~viv~Dp 89 (437)
T 1e9r_A 53 PRHLLVNGATGTGKSVLLRELAYTGLLRGDRMVIVDP 89 (437)
T ss_dssp GGCEEEEECTTSSHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred cceEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeC
Confidence 5689999999999999988776543 667777664
No 478
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=95.17 E-value=0.055 Score=42.92 Aligned_cols=35 Identities=20% Similarity=0.427 Sum_probs=27.5
Q ss_pred CCCceEEECC-CCCcHHHHHHHHHHHh---CCeEEEEec
Q psy6208 119 PPRGILLYGP-PGTGKTLIARAVANET---GAFFFLING 153 (197)
Q Consensus 119 ~~~~ill~G~-~GtGKT~la~ala~~~---~~~~~~v~~ 153 (197)
..+.|+++|+ +|+|||+++..+|..+ |.+++.+++
T Consensus 103 ~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID~ 141 (299)
T 3cio_A 103 ENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFIDA 141 (299)
T ss_dssp SCCEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CCeEEEEECCCCCCChHHHHHHHHHHHHhCCCcEEEEEC
Confidence 3456778876 7999999999887665 778888875
No 479
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=95.17 E-value=0.011 Score=43.12 Aligned_cols=23 Identities=26% Similarity=0.421 Sum_probs=20.4
Q ss_pred CceEEECCCCCcHHHHHHHHHHH
Q psy6208 121 RGILLYGPPGTGKTLIARAVANE 143 (197)
Q Consensus 121 ~~ill~G~~GtGKT~la~ala~~ 143 (197)
..|++.|++|+|||+|+.++...
T Consensus 24 ~ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 24 LKVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 45999999999999999999754
No 480
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=95.16 E-value=0.013 Score=42.83 Aligned_cols=23 Identities=26% Similarity=0.317 Sum_probs=20.6
Q ss_pred CceEEECCCCCcHHHHHHHHHHH
Q psy6208 121 RGILLYGPPGTGKTLIARAVANE 143 (197)
Q Consensus 121 ~~ill~G~~GtGKT~la~ala~~ 143 (197)
-.|++.|++|+|||+|+.++...
T Consensus 24 ~ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 24 LKIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 45999999999999999999864
No 481
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=95.16 E-value=0.011 Score=42.39 Aligned_cols=22 Identities=23% Similarity=0.354 Sum_probs=19.9
Q ss_pred CceEEECCCCCcHHHHHHHHHH
Q psy6208 121 RGILLYGPPGTGKTLIARAVAN 142 (197)
Q Consensus 121 ~~ill~G~~GtGKT~la~ala~ 142 (197)
..|++.|++|+|||+|+.++..
T Consensus 7 ~ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 7 RKIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECcCCCCHHHHHHHHHc
Confidence 4689999999999999999974
No 482
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=95.15 E-value=0.0091 Score=42.81 Aligned_cols=23 Identities=13% Similarity=0.198 Sum_probs=20.5
Q ss_pred CceEEECCCCCcHHHHHHHHHHH
Q psy6208 121 RGILLYGPPGTGKTLIARAVANE 143 (197)
Q Consensus 121 ~~ill~G~~GtGKT~la~ala~~ 143 (197)
-.|++.|++|+|||+|+..+...
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 35899999999999999999864
No 483
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=95.15 E-value=0.0096 Score=52.45 Aligned_cols=24 Identities=33% Similarity=0.562 Sum_probs=19.6
Q ss_pred CCceEEECCCCCcHHHHHHHHHHH
Q psy6208 120 PRGILLYGPPGTGKTLIARAVANE 143 (197)
Q Consensus 120 ~~~ill~G~~GtGKT~la~ala~~ 143 (197)
+..+++.+|+|+|||..+...+..
T Consensus 22 g~~~ll~~~TGsGKTl~~~~~i~~ 45 (699)
T 4gl2_A 22 GKNIIICLPTGCGKTRVAVYIAKD 45 (699)
T ss_dssp SCCEEECCCTTSCHHHHHHHHHHH
T ss_pred CCCEEEEcCCCCcHHHHHHHHHHH
Confidence 347999999999999987766544
No 484
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=95.14 E-value=0.0099 Score=51.64 Aligned_cols=28 Identities=25% Similarity=0.382 Sum_probs=23.7
Q ss_pred CCCCCceEEECCCCCcHHHHHHHHHHHh
Q psy6208 117 VKPPRGILLYGPPGTGKTLIARAVANET 144 (197)
Q Consensus 117 ~~~~~~ill~G~~GtGKT~la~ala~~~ 144 (197)
+.++..+.|.||+|+|||||++.++...
T Consensus 366 i~~G~~~~ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 366 IPQGKTVALVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4566678999999999999999997654
No 485
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=95.14 E-value=0.014 Score=42.70 Aligned_cols=24 Identities=29% Similarity=0.292 Sum_probs=20.7
Q ss_pred CCCceEEECCCCCcHHHHHHHHHH
Q psy6208 119 PPRGILLYGPPGTGKTLIARAVAN 142 (197)
Q Consensus 119 ~~~~ill~G~~GtGKT~la~ala~ 142 (197)
....|++.|++|+|||+|+.++..
T Consensus 28 ~~~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 28 KQMRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCS
T ss_pred CccEEEEECCCCCCHHHHHHHHHh
Confidence 445699999999999999999853
No 486
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=95.12 E-value=0.0044 Score=47.48 Aligned_cols=22 Identities=27% Similarity=0.326 Sum_probs=19.5
Q ss_pred eEEECCCCCcHHHHHHHHHHHh
Q psy6208 123 ILLYGPPGTGKTLIARAVANET 144 (197)
Q Consensus 123 ill~G~~GtGKT~la~ala~~~ 144 (197)
+.|.||+|+|||+++++|+..+
T Consensus 30 ~~i~GpnGsGKSTll~~i~g~~ 51 (227)
T 1qhl_A 30 TTLSGGNGAGKSTTMAAFVTAL 51 (227)
T ss_dssp HHHHSCCSHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhccc
Confidence 4577999999999999999876
No 487
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=95.09 E-value=0.014 Score=46.54 Aligned_cols=24 Identities=29% Similarity=0.391 Sum_probs=20.9
Q ss_pred CCceEEECCCCCcHHHHHHHHHHHh
Q psy6208 120 PRGILLYGPPGTGKTLIARAVANET 144 (197)
Q Consensus 120 ~~~ill~G~~GtGKT~la~ala~~~ 144 (197)
...+.|.||+|+|||+|+++++ ..
T Consensus 165 G~i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 165 GFICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp TCEEEEECSTTSSHHHHHHHHH-SC
T ss_pred CcEEEEECCCCCCHHHHHHHHH-Hh
Confidence 4457899999999999999998 54
No 488
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=95.09 E-value=0.015 Score=47.30 Aligned_cols=25 Identities=28% Similarity=0.433 Sum_probs=21.4
Q ss_pred CCceEEECCCCCcHHHHHHHHHHHh
Q psy6208 120 PRGILLYGPPGTGKTLIARAVANET 144 (197)
Q Consensus 120 ~~~ill~G~~GtGKT~la~ala~~~ 144 (197)
...+.|.|+||+|||+|..++....
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~~~~ 98 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGKML 98 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 3458899999999999999998754
No 489
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=95.08 E-value=0.011 Score=42.92 Aligned_cols=24 Identities=38% Similarity=0.513 Sum_probs=20.7
Q ss_pred CCceEEECCCCCcHHHHHHHHHHH
Q psy6208 120 PRGILLYGPPGTGKTLIARAVANE 143 (197)
Q Consensus 120 ~~~ill~G~~GtGKT~la~ala~~ 143 (197)
...+++.|++|+|||+|+.++...
T Consensus 16 ~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 16 EVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCCS
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC
Confidence 446999999999999999999754
No 490
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=95.07 E-value=0.013 Score=43.06 Aligned_cols=23 Identities=30% Similarity=0.359 Sum_probs=20.2
Q ss_pred CceEEECCCCCcHHHHHHHHHHH
Q psy6208 121 RGILLYGPPGTGKTLIARAVANE 143 (197)
Q Consensus 121 ~~ill~G~~GtGKT~la~ala~~ 143 (197)
..|++.|++|+|||+|+.++...
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 9 FKILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 36899999999999999999753
No 491
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=95.07 E-value=0.012 Score=43.34 Aligned_cols=23 Identities=26% Similarity=0.482 Sum_probs=20.3
Q ss_pred CceEEECCCCCcHHHHHHHHHHH
Q psy6208 121 RGILLYGPPGTGKTLIARAVANE 143 (197)
Q Consensus 121 ~~ill~G~~GtGKT~la~ala~~ 143 (197)
..|+|.|++|+|||+|+.++...
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 9 FKLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999999753
No 492
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.07 E-value=0.014 Score=42.51 Aligned_cols=23 Identities=17% Similarity=0.443 Sum_probs=20.7
Q ss_pred CCceEEECCCCCcHHHHHHHHHH
Q psy6208 120 PRGILLYGPPGTGKTLIARAVAN 142 (197)
Q Consensus 120 ~~~ill~G~~GtGKT~la~ala~ 142 (197)
...|++.|++|+|||+|+.++..
T Consensus 8 ~~ki~vvG~~~~GKSsli~~l~~ 30 (199)
T 2gf0_A 8 DYRVVVFGAGGVGKSSLVLRFVK 30 (199)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHH
T ss_pred eeEEEEECCCCCcHHHHHHHHHc
Confidence 45699999999999999999976
No 493
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.06 E-value=0.014 Score=43.10 Aligned_cols=24 Identities=29% Similarity=0.437 Sum_probs=20.9
Q ss_pred CCceEEECCCCCcHHHHHHHHHHH
Q psy6208 120 PRGILLYGPPGTGKTLIARAVANE 143 (197)
Q Consensus 120 ~~~ill~G~~GtGKT~la~ala~~ 143 (197)
...|++.|++|+|||+|+.++...
T Consensus 20 ~~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 20 IMKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 446999999999999999999753
No 494
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=95.04 E-value=0.013 Score=42.31 Aligned_cols=24 Identities=25% Similarity=0.361 Sum_probs=21.0
Q ss_pred CCCceEEECCCCCcHHHHHHHHHH
Q psy6208 119 PPRGILLYGPPGTGKTLIARAVAN 142 (197)
Q Consensus 119 ~~~~ill~G~~GtGKT~la~ala~ 142 (197)
....+++.|++|+|||+|+.++..
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~ 40 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNG 40 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTT
T ss_pred CeeEEEEECCCCCCHHHHHHHHhc
Confidence 345799999999999999999964
No 495
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=95.04 E-value=0.013 Score=43.19 Aligned_cols=24 Identities=25% Similarity=0.347 Sum_probs=21.0
Q ss_pred CCceEEECCCCCcHHHHHHHHHHH
Q psy6208 120 PRGILLYGPPGTGKTLIARAVANE 143 (197)
Q Consensus 120 ~~~ill~G~~GtGKT~la~ala~~ 143 (197)
...|+|.|++|+|||+|+.++...
T Consensus 24 ~~ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 24 YRKVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred cEEEEEECCCCcCHHHHHHHHHhC
Confidence 345999999999999999999764
No 496
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=95.04 E-value=0.022 Score=42.61 Aligned_cols=59 Identities=20% Similarity=0.204 Sum_probs=32.9
Q ss_pred CCCcccccCcHHHHHHHHHHHHhcccChhhHhhh---CCCCCCceEEECCCCCcHHHH-HHHHHHH
Q psy6208 82 AVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAI---GVKPPRGILLYGPPGTGKTLI-ARAVANE 143 (197)
Q Consensus 82 ~~~~~~i~g~~~~~~~l~~~v~~~~~~~~~~~~~---~~~~~~~ill~G~~GtGKT~l-a~ala~~ 143 (197)
..+|++++-.+...+.+.+.- ...+..++.. .+.....+++.+|+|+|||.. +-.+...
T Consensus 13 ~~~f~~l~l~~~l~~~l~~~g---~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~ 75 (224)
T 1qde_A 13 VYKFDDMELDENLLRGVFGYG---FEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQR 75 (224)
T ss_dssp CCCGGGGTCCHHHHHHHHHHT---CCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred cCChhhcCCCHHHHHHHHHCC---CCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHH
Confidence 356777766666666665431 1111111110 012346799999999999986 3344433
No 497
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=95.03 E-value=0.015 Score=43.13 Aligned_cols=24 Identities=29% Similarity=0.422 Sum_probs=20.7
Q ss_pred CCceEEECCCCCcHHHHHHHHHHH
Q psy6208 120 PRGILLYGPPGTGKTLIARAVANE 143 (197)
Q Consensus 120 ~~~ill~G~~GtGKT~la~ala~~ 143 (197)
...|++.|++|+|||+|+.++...
T Consensus 7 ~~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 7 QRAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp -CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 456999999999999999999764
No 498
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=95.01 E-value=0.0097 Score=47.32 Aligned_cols=25 Identities=20% Similarity=0.251 Sum_probs=21.1
Q ss_pred CCceEEECCCCCcHHHHHHHHHHHh
Q psy6208 120 PRGILLYGPPGTGKTLIARAVANET 144 (197)
Q Consensus 120 ~~~ill~G~~GtGKT~la~ala~~~ 144 (197)
...+.|.||+|+|||+|+++++...
T Consensus 169 geiv~l~G~sG~GKSTll~~l~g~~ 193 (301)
T 1u0l_A 169 GKISTMAGLSGVGKSSLLNAINPGL 193 (301)
T ss_dssp SSEEEEECSTTSSHHHHHHHHSTTC
T ss_pred CCeEEEECCCCCcHHHHHHHhcccc
Confidence 3457899999999999999997654
No 499
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=94.99 E-value=0.013 Score=43.54 Aligned_cols=23 Identities=26% Similarity=0.398 Sum_probs=20.6
Q ss_pred CceEEECCCCCcHHHHHHHHHHH
Q psy6208 121 RGILLYGPPGTGKTLIARAVANE 143 (197)
Q Consensus 121 ~~ill~G~~GtGKT~la~ala~~ 143 (197)
..|++.|++|+|||+|+..+...
T Consensus 29 ~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 29 CKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 35999999999999999999864
No 500
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.98 E-value=0.0085 Score=43.13 Aligned_cols=23 Identities=35% Similarity=0.440 Sum_probs=20.3
Q ss_pred CCCceEEECCCCCcHHHHHHHHH
Q psy6208 119 PPRGILLYGPPGTGKTLIARAVA 141 (197)
Q Consensus 119 ~~~~ill~G~~GtGKT~la~ala 141 (197)
....|++.|++|+|||+|+.++.
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~ 39 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQ 39 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTC
T ss_pred CccEEEEECCCCCCHHHHHHHHh
Confidence 45579999999999999999986
Done!