RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy6208
(197 letters)
>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH
{Escherichia coli [TaxId: 562]}
Length = 256
Score = 149 bits (378), Expect = 1e-45
Identities = 50/114 (43%), Positives = 73/114 (64%), Gaps = 1/114 (0%)
Query: 83 VGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 142
+ D+ GC + ++ E+VE LR PS F+ +G K P+G+L+ GPPGTGKTL+A+A+A
Sbjct: 9 TTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAG 67
Query: 143 ETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPSIIFIDELDAIAPKRE 196
E FF I+G + + G S +R FE+A K +P IIFIDE+DA+ +R
Sbjct: 68 EAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRG 121
>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH
{Thermus thermophilus [TaxId: 274]}
Length = 247
Score = 148 bits (376), Expect = 2e-45
Identities = 46/114 (40%), Positives = 70/114 (61%), Gaps = 1/114 (0%)
Query: 83 VGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 142
V + D+ G + ++KE+VE L++PS F +G + P+G+LL GPPG GKT +ARAVA
Sbjct: 6 VTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAG 64
Query: 143 ETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPSIIFIDELDAIAPKRE 196
E F +G + + G + +R FE A +++P I+FIDE+DA+ KR
Sbjct: 65 EARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRG 118
>d1e32a3 d.31.1.1 (A:107-200) Membrane fusion atpase p97 domain 2,
P97-Nc {Mouse (Mus musculus) [TaxId: 10090]}
Length = 94
Score = 127 bits (322), Expect = 3e-39
Identities = 60/76 (78%), Positives = 69/76 (90%)
Query: 6 EGEMSNLFEVYLKPYFLEAYRPVHKDDLFIVRGGMRAVEFKIVDTDPAPYCIVAADTVIH 65
EG NLFEVYLKPYFLEAYRP+ K D+F+VRGGMRAVEFK+V+TDP+PYCIVA DTVIH
Sbjct: 18 EGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDTVIH 77
Query: 66 CEGDPIKREEEEEASN 81
CEG+PIKRE+EEE+ N
Sbjct: 78 CEGEPIKREDEEESLN 93
>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 258
Score = 131 bits (330), Expect = 1e-38
Identities = 109/114 (95%), Positives = 114/114 (100%)
Query: 83 VGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 142
VGYDD+GGCRKQLAQIKEMVELPLRHP+LFKAIGVKPPRGILLYGPPGTGKTLIARAVAN
Sbjct: 1 VGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 60
Query: 143 ETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPSIIFIDELDAIAPKRE 196
ETGAFFFLINGPEIMSKLAGESESNLRKAFEEA+KN+P+IIFIDELDAIAPKRE
Sbjct: 61 ETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKRE 114
>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 265
Score = 123 bits (310), Expect = 1e-35
Identities = 52/113 (46%), Positives = 79/113 (69%)
Query: 83 VGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 142
V ++DIGG +++E+V+ P+ HP F G+ P +G+L YGPPG GKTL+A+A+AN
Sbjct: 4 VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIAN 63
Query: 143 ETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPSIIFIDELDAIAPKR 195
E A F I GPE+++ GESE+N+R+ F++A + +P ++F DELD+IA R
Sbjct: 64 ECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKAR 116
>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId:
161736]}
Length = 321
Score = 100 bits (249), Expect = 4e-26
Identities = 22/129 (17%), Positives = 45/129 (34%), Gaps = 7/129 (5%)
Query: 72 KREEEEEASNAVGYDDIGGCRKQLAQIKE--MVELPLRHPSLFKAIGVKPPRGILL-YGP 128
K + E+ S +V + G ++ EL P + + G + G+++ G
Sbjct: 72 KSVKAEDGSVSVVQVENGFMKQGHRGWLVDLTGELVGCSPVVAEFGGHRYASGMVIVTGK 131
Query: 129 PGTGKTLIARAVANETGA--FFFLINGPEIMSKLAGESESNLRKAFEEADKNSPSIIFID 186
+GKT + A+ G + + E +S + + + +I ID
Sbjct: 132 GNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQ--HRVIVID 189
Query: 187 ELDAIAPKR 195
L +
Sbjct: 190 SLKNVIGAA 198
>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase
domain {Simian virus 40 [TaxId: 10633]}
Length = 362
Score = 82.8 bits (204), Expect = 1e-19
Identities = 23/112 (20%), Positives = 39/112 (34%), Gaps = 11/112 (9%)
Query: 92 RKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLI 151
L ++ +V L+ + R L GP +GKT +A A+ G +
Sbjct: 130 HCLLPKMDSVVYDFLKC----MVYNIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALNV 185
Query: 152 NGPEIMSK-LAGESESNLRKAFEEAD------KNSPSIIFIDELDAIAPKRE 196
N P G + FE+ ++ PS I+ LD + +
Sbjct: 186 NLPLDRLNFELGVAIDQFLVVFEDVKGTGGESRDLPSGQGINNLDNLRDYLD 237
>d1d2na_ c.37.1.20 (A:) Hexamerization domain of
N-ethylmalemide-sensitive fusion (NSF) protein {Chinese
hamster (Cricetulus griseus) [TaxId: 10029]}
Length = 246
Score = 71.9 bits (175), Expect = 3e-16
Identities = 23/99 (23%), Positives = 46/99 (46%), Gaps = 1/99 (1%)
Query: 98 IKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIM 157
+ +++ K P +LL GPP +GKT +A +A E+ F I P+ M
Sbjct: 18 VTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKM 77
Query: 158 SKLAGESESNL-RKAFEEADKNSPSIIFIDELDAIAPKR 195
+ ++ +K F++A K+ S + +D+++ +
Sbjct: 78 IGFSETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYV 116
>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta,
toxin zeta subunit {Streptococcus pyogenes [TaxId:
1314]}
Length = 273
Score = 71.5 bits (174), Expect = 7e-16
Identities = 19/119 (15%), Positives = 38/119 (31%), Gaps = 12/119 (10%)
Query: 80 SNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARA 139
+N V + D + ++E+++ V+ P LL G PG+GKT + A
Sbjct: 1 ANIVNFTDKQFENRLNDNLEELIQGKK---------AVESPTAFLLGGQPGSGKTSLRSA 51
Query: 140 VANETGAFFFLINGPEIMSKL---AGESESNLRKAFEEADKNSPSIIFIDELDAIAPKR 195
+ ET +I+ + + + + S +
Sbjct: 52 IFEETQGNVIVIDNDTFKQQHPNFDELVKLYEKDVVKHVTPYSNRMTEAIISRLSDQGY 110
>d1cz5a2 d.31.1.1 (A:92-185) C-terminal domain of VAT-N, VAT-Nc
{Archaeon Thermoplasma acidophilum [TaxId: 2303]}
Length = 94
Score = 66.8 bits (163), Expect = 2e-15
Identities = 18/84 (21%), Positives = 32/84 (38%), Gaps = 7/84 (8%)
Query: 1 MKLVPEGEMSNLFEVYLKPYFLEAYRPVHKDDLFIVRG----GMRAVEFKIVDTDPAPYC 56
++ + E Y++ + RP+ + D V G G + FK+V T P+
Sbjct: 13 IRKDQRLKFGEGIEEYVQRALIR--RPMLEQDNISVPGLTLAGQTGLLFKVVKTLPSKVP 70
Query: 57 -IVAADTVIHCEGDPIKREEEEEA 79
+ +T I +P EE
Sbjct: 71 VEIGEETKIEIREEPASEVLEEGG 94
>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB
{Thermus thermophilus [TaxId: 274]}
Length = 239
Score = 63.1 bits (152), Expect = 7e-13
Identities = 30/111 (27%), Positives = 52/111 (46%), Gaps = 15/111 (13%)
Query: 86 DDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANETG 145
D+ G + +++ +E +P +LL+GPPG GKT +A +A+E G
Sbjct: 9 DEYIGQERLKQKLRVYLEAAKARK--------EPLEHLLLFGPPGLGKTTLAHVIAHELG 60
Query: 146 AFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPSIIFIDELDAIAPKRE 196
+ +GP I G+ + L + EE I+FIDE+ ++ + E
Sbjct: 61 VNLRVTSGPAIEKP--GDLAAILANSLEEG-----DILFIDEIHRLSRQAE 104
>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}
Length = 309
Score = 60.6 bits (146), Expect = 8e-12
Identities = 30/108 (27%), Positives = 46/108 (42%), Gaps = 8/108 (7%)
Query: 97 QIKEMVELPLRHPSLFKAI-GVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPE 155
+ + R L + + P+ IL+ GP G GKT IAR +A A F + +
Sbjct: 25 AVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATK 84
Query: 156 I--MSKLAGESESNLRKAFEEADK-----NSPSIIFIDELDAIAPKRE 196
+ + E +S +R + A I+FIDE+D I K E
Sbjct: 85 FTEVGYVGKEVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGE 132
>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum
aerophilum [TaxId: 13773]}
Length = 276
Score = 54.4 bits (129), Expect = 9e-10
Identities = 26/116 (22%), Positives = 39/116 (33%), Gaps = 11/116 (9%)
Query: 86 DDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANE-- 143
+ +QL Q+ ++ LR+P L G PGTGKT+ R +
Sbjct: 16 KRLPHREQQLQQLDILLGNWLRNPG-------HHYPRATLLGRPGTGKTVTLRKLWELYK 68
Query: 144 --TGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPSIIFIDELDAIAPKREK 197
T A F ING + A E + F+ L +R+
Sbjct: 69 DKTTARFVYINGFIYRNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDL 124
>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 253
Score = 53.6 bits (127), Expect = 2e-09
Identities = 27/117 (23%), Positives = 42/117 (35%), Gaps = 10/117 (8%)
Query: 85 YDDIGGCRKQLAQIKEMVE-LPLRHPSLFKA---IGVKPPRGILLYGPPGTGKTLIARAV 140
+ G + + ++K + + FK G R +LYGPPG GKT A V
Sbjct: 13 LQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLV 72
Query: 141 ANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPSIIFIDELDAIAPKREK 197
A E G N ++ SK + L + A N + + + K
Sbjct: 73 AQELGYDILEQNASDVRSK------TLLNAGVKNALDNMSVVGYFKHNEEAQNLNGK 123
>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB
{Thermotoga maritima [TaxId: 2336]}
Length = 238
Score = 49.6 bits (117), Expect = 3e-08
Identities = 22/111 (19%), Positives = 43/111 (38%), Gaps = 16/111 (14%)
Query: 86 DDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANETG 145
D+ G ++ +E + +LL GPPG GKT +A +A+E
Sbjct: 9 DEFIGQENVKKKLSLALEAAKMRG--------EVLDHVLLAGPPGLGKTTLAHIIASELQ 60
Query: 146 AFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPSIIFIDELDAIAPKRE 196
+ +GP + + ++ ++ ++FIDE+ + E
Sbjct: 61 TNIHVTSGPVL------VKQGDMAAILTSLERG--DVLFIDEIHRLNKAVE 103
>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}
Length = 443
Score = 48.6 bits (115), Expect = 1e-07
Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Query: 120 PRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIM--SKLAGESESNLRKAFEEADK 177
P+ IL+ GP G GKT IAR +A A F + + + E +S +R + A K
Sbjct: 49 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAMK 108
Query: 178 N 178
Sbjct: 109 L 109
>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal
domain {Aeropyrum pernix [TaxId: 56636]}
Length = 287
Score = 46.7 bits (109), Expect = 5e-07
Identities = 9/82 (10%), Positives = 20/82 (24%), Gaps = 4/82 (4%)
Query: 93 KQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLIN 152
+ + + L + + + G G GKT +A+
Sbjct: 23 GEAEALARIYLNRLLSGAGLSDVNM----IYGSIGRVGIGKTTLAKFTVKRVSEAAAKEG 78
Query: 153 GPEIMSKLAGESESNLRKAFEE 174
+ + + NL
Sbjct: 79 LTVKQAYVNAFNAPNLYTILSL 100
>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015
{Agrobacterium tumefaciens [TaxId: 358]}
Length = 176
Score = 42.6 bits (99), Expect = 6e-06
Identities = 13/56 (23%), Positives = 24/56 (42%)
Query: 123 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKN 178
+LL G PG+GK+ IA A+AN G + ++ + + ++
Sbjct: 7 LLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDLWGYIKHGRIDPWLPQSHQQNRM 62
>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54
(NtrC1), C-terminal domain {Aquifex aeolicus [TaxId:
63363]}
Length = 247
Score = 40.7 bits (95), Expect = 4e-05
Identities = 18/86 (20%), Positives = 34/86 (39%), Gaps = 18/86 (20%)
Query: 123 ILLYGPPGTGKTLIARAVANETG--------AFFFLINGPEIMSKLAGE-------SESN 167
+L+ G G GK ++AR + + I ++L G + S+
Sbjct: 26 VLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFEAELFGYEKGAFTGAVSS 85
Query: 168 LRKAFEEADKNSPSIIFIDELDAIAP 193
FE AD + +F+DE+ ++
Sbjct: 86 KEGFFELADGGT---LFLDEIGELSL 108
>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase
III, N-domain {Escherichia coli [TaxId: 562]}
Length = 207
Score = 38.6 bits (88), Expect = 2e-04
Identities = 5/32 (15%), Positives = 11/32 (34%)
Query: 118 KPPRGILLYGPPGTGKTLIARAVANETGAFFF 149
+ +L+ PG G + A++
Sbjct: 22 RGHHALLIQALPGMGDDALIYALSRYLLCQQP 53
>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase
{Streptomyces venezuelae [TaxId: 54571]}
Length = 178
Score = 37.7 bits (86), Expect = 3e-04
Identities = 8/38 (21%), Positives = 15/38 (39%)
Query: 120 PRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIM 157
R I+L G GK+ I R + + + ++
Sbjct: 3 TRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLI 40
>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI
{Rhodobacter capsulatus [TaxId: 1061]}
Length = 333
Score = 38.4 bits (88), Expect = 3e-04
Identities = 10/20 (50%), Positives = 15/20 (75%)
Query: 122 GILLYGPPGTGKTLIARAVA 141
G+L++G GTGK+ RA+A
Sbjct: 30 GVLVFGDRGTGKSTAVRALA 49
>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}
Length = 364
Score = 38.3 bits (88), Expect = 4e-04
Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 6/84 (7%)
Query: 119 PPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEI--MSKLAGESESNLRKAFEEAD 176
ILL GP G+GKTL+A+ +A + + + + + E+ L + + +D
Sbjct: 67 SKSNILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASD 126
Query: 177 KN----SPSIIFIDELDAIAPKRE 196
N I+FIDE+D I+ E
Sbjct: 127 WNVQKAQKGIVFIDEIDKISRLSE 150
>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III,
N-domain {Thermotoga maritima [TaxId: 2336]}
Length = 198
Score = 37.3 bits (86), Expect = 4e-04
Identities = 4/27 (14%), Positives = 9/27 (33%)
Query: 123 ILLYGPPGTGKTLIARAVANETGAFFF 149
IL+ G + ++ + F
Sbjct: 18 ILINGEDLSYPREVSLELPEYVEKFPP 44
>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major
[TaxId: 5664]}
Length = 174
Score = 37.3 bits (85), Expect = 4e-04
Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Query: 118 KPPRG--ILLYGPPGTGKTLIARAVANETGAFFFL 150
+ P+G IL+ G PGTGKT +A +A E F L
Sbjct: 1 EQPKGINILITGTPGTGKTSMAEMIAAELDGFQHL 35
>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus
solfataricus [TaxId: 2287]}
Length = 283
Score = 37.8 bits (86), Expect = 4e-04
Identities = 11/58 (18%), Positives = 23/58 (39%)
Query: 121 RGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKN 178
L+ G TGK+ I + NE + ++ + + + L + +E +K
Sbjct: 30 PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFEERNYISYKDFLLELQKEINKL 87
>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli
[TaxId: 562]}
Length = 169
Score = 37.0 bits (84), Expect = 6e-04
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 121 RGILLYGPPGTGKTLIARAVANETGAFFFLIN 152
R I L GP G GK+ I R +A + F+ +
Sbjct: 3 RNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSD 34
>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III,
N-domain {Escherichia coli [TaxId: 562]}
Length = 239
Score = 36.6 bits (84), Expect = 0.001
Identities = 21/128 (16%), Positives = 32/128 (25%), Gaps = 34/128 (26%)
Query: 86 DDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANETG 145
D+ G L + + L + L G G GKT IAR +A
Sbjct: 12 ADVVGQEHVLTALANGLSLG------------RIHHAYLFSGTRGVGKTSIARLLAKGLN 59
Query: 146 AFFFLINGPEIMSKLAGESESN------------------LRKAFEEADKNSPS----II 183
+ P + E E R + +
Sbjct: 60 CETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVY 119
Query: 184 FIDELDAI 191
IDE+ +
Sbjct: 120 LIDEVHML 127
>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 252
Score = 36.3 bits (82), Expect = 0.001
Identities = 20/105 (19%), Positives = 33/105 (31%), Gaps = 17/105 (16%)
Query: 86 DDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANETG 145
+ + + +K + + P P L LLYGP GTGK A+
Sbjct: 11 NALSHNEELTNFLKSLSDQPRDLPHL------------LLYGPNGTGKKTRCMAL----- 53
Query: 146 AFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPSIIFIDELDA 190
G + + + + E +SP + I D
Sbjct: 54 LESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPSDM 98
>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR,
ribosylnicotinamide kinase domain {Haemophilus
influenzae [TaxId: 727]}
Length = 192
Score = 35.4 bits (80), Expect = 0.002
Identities = 6/39 (15%), Positives = 16/39 (41%)
Query: 121 RGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSK 159
+ + + G +GK+++ +A G E + +
Sbjct: 8 KTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFE 46
>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+
modules {Escherichia coli [TaxId: 562]}
Length = 268
Score = 35.8 bits (82), Expect = 0.002
Identities = 21/86 (24%), Positives = 36/86 (41%), Gaps = 12/86 (13%)
Query: 118 KPPRGILLYGPPGTGKTLIARAVA------------NETGAFFFLINGPEIMSKLAGESE 165
+ LL G G GKT IA +A + + I +K G+ E
Sbjct: 37 RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFE 96
Query: 166 SNLRKAFEEADKNSPSIIFIDELDAI 191
+ ++ ++++ SI+FIDE+ I
Sbjct: 97 KRFKALLKQLEQDTNSILFIDEIHTI 122
>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3'
phosphatase, C-terminal domain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 172
Score = 34.8 bits (79), Expect = 0.003
Identities = 9/52 (17%), Positives = 18/52 (34%)
Query: 119 PPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRK 170
P ++ G PG GK+ + G + + ++ LR+
Sbjct: 13 NPEVVVAVGFPGAGKSTFIQEHLVSAGYVHVNRDTLGSWQRCVSSCQAALRQ 64
>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens),
isoenzyme 6 [TaxId: 9606]}
Length = 173
Score = 34.9 bits (79), Expect = 0.003
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 123 ILLYGPPGTGKTLIARAVANETGAFFF 149
ILL G PG GKT + + +A+++G +
Sbjct: 7 ILLTGTPGVGKTTLGKELASKSGLKYI 33
>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi
[TaxId: 556]}
Length = 170
Score = 34.5 bits (78), Expect = 0.003
Identities = 9/27 (33%), Positives = 12/27 (44%)
Query: 123 ILLYGPPGTGKTLIARAVANETGAFFF 149
I + G G G T + R +A G F
Sbjct: 5 IFMVGARGCGMTTVGRELARALGYEFV 31
>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId:
562]}
Length = 171
Score = 34.6 bits (78), Expect = 0.003
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 123 ILLYGPPGTGKTLIARAVANETGAFFF 149
+L G G+GK+ +A VA++ A F
Sbjct: 9 YVLMGVSGSGKSAVASEVAHQLHAAFL 35
>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain
{Fungus (Penicillium chrysogenum) [TaxId: 5076]}
Length = 183
Score = 34.7 bits (78), Expect = 0.004
Identities = 10/34 (29%), Positives = 14/34 (41%), Gaps = 2/34 (5%)
Query: 118 KPPRG--ILLYGPPGTGKTLIARAVANETGAFFF 149
+ +G I L G +GK IARA+
Sbjct: 2 RATQGFTIFLTGYMNSGKDAIARALQVTLNQQGG 35
>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus
halodurans [TaxId: 86665]}
Length = 176
Score = 34.2 bits (77), Expect = 0.004
Identities = 6/28 (21%), Positives = 14/28 (50%)
Query: 123 ILLYGPPGTGKTLIARAVANETGAFFFL 150
++ GP G GK+ + +A + ++
Sbjct: 5 YIITGPAGVGKSTTCKRLAAQLDNSAYI 32
>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni
[TaxId: 197]}
Length = 161
Score = 34.1 bits (77), Expect = 0.004
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 121 RGILLYGPPGTGKTLIARAVANETGAFFF 149
+ I+ G G+GK+ +ARA+A + F
Sbjct: 1 KNIVFIGFMGSGKSTLARALAKDLDLVFL 29
>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 189
Score = 34.2 bits (77), Expect = 0.005
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 121 RGILLYGPPGTGKTLIARAVANE 143
R + L GPPG GKT + +
Sbjct: 2 RHVFLTGPPGVGKTTLIHKASEV 24
>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 165
Score = 33.8 bits (76), Expect = 0.005
Identities = 11/30 (36%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 120 PRGILLYGPPGTGKTLIARAVANETGAFFF 149
P+ +L G PG+GK+ I R +A G
Sbjct: 2 PK-AVLVGLPGSGKSTIGRRLAKALGVGLL 30
>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB
{Escherichia coli [TaxId: 562]}
Length = 433
Score = 34.5 bits (78), Expect = 0.007
Identities = 22/127 (17%), Positives = 40/127 (31%), Gaps = 22/127 (17%)
Query: 83 VGYDDIGGCR-------KQLAQIKEMVELPLRHPSLFKAIGVKPP-----RGILLYGPPG 130
VG + GG ++ ++ + GV P R +L+ G G
Sbjct: 1 VGQGEFGGAPFKRFLRGTRIVSGGKLKRMTREKAKQVTVAGVPMPRDAEPRHLLVNGATG 60
Query: 131 TGKT-----LIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPSIIFI 185
TGK+ L + NG +++SK + D+ + F
Sbjct: 61 TGKSVLLRELAYTGLLRGDRMVIVDPNG-DMLSKFGRDK----DIILNPYDQRTKGWSFF 115
Query: 186 DELDAIA 192
+E+
Sbjct: 116 NEIRNDY 122
>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis
elegans [TaxId: 6239]}
Length = 277
Score = 33.2 bits (75), Expect = 0.014
Identities = 14/89 (15%), Positives = 31/89 (34%), Gaps = 9/89 (10%)
Query: 110 SLFKAIGVKPPRGILLYGPPGTGKTLIARAVANET---------GAFFFLINGPEIMSKL 160
+ + L+G G+GK++IA +++ + +G S
Sbjct: 34 KKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTF 93
Query: 161 AGESESNLRKAFEEADKNSPSIIFIDELD 189
++ L E+ N PS+ + +
Sbjct: 94 DLFTDILLMLKSEDDLLNFPSVEHVTSVV 122
>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea
mays) [TaxId: 4577]}
Length = 189
Score = 32.9 bits (74), Expect = 0.014
Identities = 5/32 (15%), Positives = 12/32 (37%), Gaps = 1/32 (3%)
Query: 118 KPPRGILLYGPPGTGKTLIARAVANETGAFFF 149
P + +++ G P +GK + +
Sbjct: 2 DPLK-VMISGAPASGKGTQCELIKTKYQLAHI 32
>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS
kinase) {Human (Homo sapiens) [TaxId: 9606]}
Length = 195
Score = 32.7 bits (73), Expect = 0.015
Identities = 7/27 (25%), Positives = 11/27 (40%)
Query: 123 ILLYGPPGTGKTLIARAVANETGAFFF 149
+ L G G GKT ++ A+
Sbjct: 22 VWLTGLSGAGKTTVSMALEEYLVCHGI 48
>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum
[TaxId: 44689]}
Length = 194
Score = 32.2 bits (72), Expect = 0.021
Identities = 8/28 (28%), Positives = 13/28 (46%), Gaps = 1/28 (3%)
Query: 118 KPPRGILLYGPPGTGKTLIARAVANETG 145
KP + + G PG+GK + + G
Sbjct: 5 KPNV-VFVLGGPGSGKGTQCANIVRDFG 31
>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain
{Bacteriophage T4 [TaxId: 10665]}
Length = 152
Score = 32.0 bits (71), Expect = 0.021
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 123 ILLYGPPGTGKTLIARAVANETGAFFFL 150
IL G PG+GK+ AR + F+ +
Sbjct: 5 ILTIGCPGSGKSTWAREFIAKNPGFYNI 32
>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}
Length = 225
Score = 32.3 bits (72), Expect = 0.022
Identities = 8/27 (29%), Positives = 12/27 (44%)
Query: 123 ILLYGPPGTGKTLIARAVANETGAFFF 149
I + GP G GK + +A+A
Sbjct: 6 ITIDGPSGAGKGTLCKAMAEALQWHLL 32
>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 242
Score = 32.5 bits (72), Expect = 0.024
Identities = 11/62 (17%), Positives = 20/62 (32%)
Query: 116 GVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEA 175
G++ ++G TGKT I +A G + E + A
Sbjct: 19 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVA 78
Query: 176 DK 177
++
Sbjct: 79 ER 80
>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId:
9823]}
Length = 194
Score = 32.2 bits (72), Expect = 0.026
Identities = 8/33 (24%), Positives = 14/33 (42%)
Query: 117 VKPPRGILLYGPPGTGKTLIARAVANETGAFFF 149
+K + I + G PG+GK + + G
Sbjct: 5 LKKSKIIFVVGGPGSGKGTQCEKIVQKYGYTHL 37
>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos
taurus), mitochondrial izozyme-2 [TaxId: 9913]}
Length = 190
Score = 31.8 bits (71), Expect = 0.028
Identities = 11/28 (39%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
Query: 120 PRG--ILLYGPPGTGKTLIARAVANETG 145
P+G +L GPPG GK A +A
Sbjct: 1 PKGVRAVLLGPPGAGKGTQAPKLAKNFC 28
>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 237
Score = 32.0 bits (71), Expect = 0.036
Identities = 17/75 (22%), Positives = 30/75 (40%)
Query: 123 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPSI 182
+L YGPPGTGKT A+ E + + ++ S +R+ + + + S
Sbjct: 36 MLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISIVREKVKNFARLTVSK 95
Query: 183 IFIDELDAIAPKREK 197
+L+ K
Sbjct: 96 PSKHDLENYPCPPYK 110
>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 180
Score = 31.5 bits (70), Expect = 0.038
Identities = 9/26 (34%), Positives = 12/26 (46%)
Query: 123 ILLYGPPGTGKTLIARAVANETGAFF 148
++L GPPG GK A + A
Sbjct: 5 MVLIGPPGAGKGTQAPNLQERFHAAH 30
>d1bifa1 c.37.1.7 (A:37-249)
6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase,
kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 213
Score = 31.9 bits (71), Expect = 0.038
Identities = 8/27 (29%), Positives = 13/27 (48%)
Query: 120 PRGILLYGPPGTGKTLIARAVANETGA 146
P I++ G P GKT I++ +
Sbjct: 2 PTLIVMVGLPARGKTYISKKLTRYLNF 28
>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC
{Synechococcus sp. strain PCC 7942 (Anacystis nidulans
R2) [TaxId: 1140]}
Length = 242
Score = 31.8 bits (71), Expect = 0.040
Identities = 10/28 (35%), Positives = 11/28 (39%)
Query: 116 GVKPPRGILLYGPPGTGKTLIARAVANE 143
G IL G GTGKTL+
Sbjct: 22 GFFKDSIILATGATGTGKTLLVSRFVEN 49
>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 286
Score = 31.3 bits (70), Expect = 0.064
Identities = 10/44 (22%), Positives = 18/44 (40%)
Query: 107 RHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFL 150
++ + G K P I GP G+GK+ + + N +
Sbjct: 14 KYIPEWFETGNKCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGG 57
>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 181
Score = 30.6 bits (68), Expect = 0.068
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 123 ILLYGPPGTGKTLIARAVANETGAFFF 149
+LL GPPG GK A +A + G
Sbjct: 3 VLLLGPPGAGKGTQAVKLAEKLGIPQI 29
>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 182
Score = 30.7 bits (68), Expect = 0.073
Identities = 8/23 (34%), Positives = 11/23 (47%)
Query: 123 ILLYGPPGTGKTLIARAVANETG 145
++L G PG GK A + G
Sbjct: 3 LVLMGLPGAGKGTQAEKIVAAYG 25
>d1rroa_ a.39.1.4 (A:) Oncomodulin {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 108
Score = 29.9 bits (67), Expect = 0.075
Identities = 10/38 (26%), Positives = 15/38 (39%)
Query: 157 MSKLAGESESNLRKAFEEADKNSPSIIFIDELDAIAPK 194
S L+ S S ++ F D + + DEL K
Sbjct: 32 TSGLSKMSASQVKDIFRFIDNDQSGYLDGDELKYFLQK 69
>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic
domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 251
Score = 30.8 bits (68), Expect = 0.079
Identities = 10/41 (24%), Positives = 17/41 (41%), Gaps = 2/41 (4%)
Query: 99 KEMVELPLRHPSLFKAIGVKPPRG--ILLYGPPGTGKTLIA 137
E++ L +L +G G L+G TGK+ +
Sbjct: 11 SELICLTTGSKNLDTLLGGGVETGSITELFGEFRTGKSQLC 51
>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos
taurus), mitochondrial izozyme-3 [TaxId: 9913]}
Length = 189
Score = 30.6 bits (68), Expect = 0.080
Identities = 5/27 (18%), Positives = 10/27 (37%)
Query: 123 ILLYGPPGTGKTLIARAVANETGAFFF 149
+ G PG+GK ++ +
Sbjct: 9 AAIMGAPGSGKGTVSSRITKHFELKHL 35
>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic
domain {Archaeon Methanococcus voltae [TaxId: 2188]}
Length = 258
Score = 30.8 bits (68), Expect = 0.081
Identities = 13/74 (17%), Positives = 18/74 (24%), Gaps = 9/74 (12%)
Query: 95 LAQIKEMVELPLRHPSLFKAIGVKPPRG--ILLYGPPGTGKTLIARAVA-------NETG 145
L Q + +L L +G G G+GKT I
Sbjct: 7 LKQRSTVWKLSTSSSELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFY 66
Query: 146 AFFFLINGPEIMSK 159
+ G K
Sbjct: 67 DEEAVSKGEVAQPK 80
>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC
{Synechococcus sp. strain PCC 7942 (Anacystis nidulans
R2) [TaxId: 1140]}
Length = 242
Score = 30.7 bits (68), Expect = 0.085
Identities = 10/26 (38%), Positives = 13/26 (50%)
Query: 116 GVKPPRGILLYGPPGTGKTLIARAVA 141
G+ R L+ G GTGKTL +
Sbjct: 22 GLPIGRSTLVSGTSGTGKTLFSIQFL 47
>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId:
1313]}
Length = 223
Score = 30.7 bits (68), Expect = 0.091
Identities = 8/27 (29%), Positives = 16/27 (59%)
Query: 123 ILLYGPPGTGKTLIARAVANETGAFFF 149
I + GP +GK+ +A+ +A + G +
Sbjct: 6 IAIDGPASSGKSTVAKIIAKDFGFTYL 32
>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15
homolog {Human (Homo sapiens) [TaxId: 9606]}
Length = 258
Score = 30.8 bits (68), Expect = 0.092
Identities = 9/54 (16%), Positives = 20/54 (37%), Gaps = 3/54 (5%)
Query: 93 KQLAQIKEMVE-LPLRHPSLFKAIGVKPPRG--ILLYGPPGTGKTLIARAVANE 143
+ ++ ++MV + K +G +G TGKT ++ +
Sbjct: 7 FEYSEKRKMVFHITTGSQEFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVT 60
>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia
coli [TaxId: 562]}
Length = 179
Score = 30.3 bits (67), Expect = 0.092
Identities = 8/27 (29%), Positives = 12/27 (44%)
Query: 123 ILLYGPPGTGKTLIARAVANETGAFFF 149
I+L G P GK A+ + + G
Sbjct: 3 IILLGAPVAGKGTQAQFIMEKYGIPQI 29
>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId:
9606]}
Length = 194
Score = 30.3 bits (67), Expect = 0.095
Identities = 7/27 (25%), Positives = 11/27 (40%), Gaps = 1/27 (3%)
Query: 119 PPRGILLYGPPGTGKTLIARAVANETG 145
P + + G PG GK + + G
Sbjct: 1 PLV-VFVLGGPGAGKGTQCARIVEKYG 26
>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain
{Human papillomavirus type 18 [TaxId: 333761]}
Length = 205
Score = 30.2 bits (68), Expect = 0.100
Identities = 5/22 (22%), Positives = 10/22 (45%)
Query: 121 RGILLYGPPGTGKTLIARAVAN 142
++ GP TGK+ + +
Sbjct: 54 NCLVFCGPANTGKSYFGMSFIH 75
>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA
{Escherichia coli [TaxId: 562]}
Length = 274
Score = 30.4 bits (67), Expect = 0.10
Identities = 7/26 (26%), Positives = 12/26 (46%)
Query: 116 GVKPPRGILLYGPPGTGKTLIARAVA 141
+ L P G GK+++A +A
Sbjct: 25 NMVAGTVGALVSPGGAGKSMLALQLA 50
>d2pvba_ a.39.1.4 (A:) Parvalbumin {Pike (Esox lucius) [TaxId:
8010]}
Length = 107
Score = 29.5 bits (66), Expect = 0.11
Identities = 11/35 (31%), Positives = 17/35 (48%)
Query: 157 MSKLAGESESNLRKAFEEADKNSPSIIFIDELDAI 191
LA +S +++KAF D++ I DEL
Sbjct: 31 KVGLASKSLDDVKKAFYVIDQDKSGFIEEDELKLF 65
>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 196
Score = 30.0 bits (66), Expect = 0.14
Identities = 6/27 (22%), Positives = 9/27 (33%)
Query: 123 ILLYGPPGTGKTLIARAVANETGAFFF 149
I + G PG GK + +
Sbjct: 11 IFVLGGPGAGKGTQCEKLVKDYSFVHL 37
>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic
domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 254
Score = 30.0 bits (66), Expect = 0.14
Identities = 19/106 (17%), Positives = 32/106 (30%), Gaps = 4/106 (3%)
Query: 95 LAQIKEMVELPLRHPSLFKAIGVKPPRG--ILLYGPPGTGKTLIAR--AVANETGAFFFL 150
L + + + SL K +G ++G G+GKT +A AV +
Sbjct: 9 LKKRATIGRISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGG 68
Query: 151 INGPEIMSKLAGESESNLRKAFEEADKNSPSIIFIDELDAIAPKRE 196
+NG I + + P + A A
Sbjct: 69 LNGSVIWIDTENTFRPERIREIAQNRGLDPDEVLKHIYVARAFNSN 114
>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus
globisporus [TaxId: 1459]}
Length = 182
Score = 29.5 bits (65), Expect = 0.16
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 123 ILLYGPPGTGKTLIARAVANETG 145
I+L G PG GK A + + G
Sbjct: 3 IVLMGLPGAGKGTQADRIVEKYG 25
>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon
Pyrococcus furiosus [TaxId: 2261]}
Length = 231
Score = 29.5 bits (65), Expect = 0.19
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 123 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEI 156
+L GPPG GKT A A+A E + N E+
Sbjct: 48 LLFAGPPGVGKTTAALALARELFGENWRHNFLEL 81
>d1rwya_ a.39.1.4 (A:) Parvalbumin {Rat (Rattus rattus) [TaxId:
10117]}
Length = 109
Score = 28.4 bits (63), Expect = 0.22
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 157 MSKLAGESESNLRKAFEEADKNSPSIIFIDELDAI 191
M L +S +++K F DK+ I DEL +I
Sbjct: 32 MVGLKKKSADDVKKVFHILDKDKSGFIEEDELGSI 66
>d5pala_ a.39.1.4 (A:) Parvalbumin {Leopard shark (Triakis
semifasciata) [TaxId: 30493]}
Length = 109
Score = 28.4 bits (63), Expect = 0.24
Identities = 9/38 (23%), Positives = 20/38 (52%)
Query: 157 MSKLAGESESNLRKAFEEADKNSPSIIFIDELDAIAPK 194
+ L G++++ +++ FE DK+ I +EL +
Sbjct: 32 LVGLKGKTDAQVKEVFEILDKDQSGFIEEEELKGVLKG 69
>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever
virus [TaxId: 11089]}
Length = 140
Score = 28.9 bits (63), Expect = 0.26
Identities = 6/15 (40%), Positives = 7/15 (46%)
Query: 123 ILLYGPPGTGKTLIA 137
+L PG GKT
Sbjct: 10 TVLDFHPGAGKTRRF 24
>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis
C virus (HCV), different isolates [TaxId: 11103]}
Length = 136
Score = 28.7 bits (63), Expect = 0.29
Identities = 11/52 (21%), Positives = 19/52 (36%), Gaps = 3/52 (5%)
Query: 123 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEE 174
L+ P G+GK+ A G + L+ P + + + KA
Sbjct: 11 AHLHAPTGSGKSTKVPAAYAAQG-YKVLVLNPSVA--ATLGFGAYMSKAHGV 59
>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus
influenzae [TaxId: 727]}
Length = 158
Score = 28.5 bits (63), Expect = 0.35
Identities = 8/48 (16%), Positives = 17/48 (35%)
Query: 95 LAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 142
+ M+ + + + + + L G G GKT + R +
Sbjct: 8 IPDEFSMLRFGKKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQ 55
>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 182
Score = 28.4 bits (62), Expect = 0.38
Identities = 7/29 (24%), Positives = 13/29 (44%)
Query: 123 ILLYGPPGTGKTLIARAVANETGAFFFLI 151
++L GP GK+ + R + F +
Sbjct: 5 VVLSGPSAVGKSTVVRCLRERIPNLHFSV 33
>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus
thermophilus [TaxId: 274]}
Length = 387
Score = 28.9 bits (64), Expect = 0.38
Identities = 24/88 (27%), Positives = 36/88 (40%), Gaps = 25/88 (28%)
Query: 123 ILLYGPPGTGKTLIARAVANETGAFFFLING--PEIM----------------SKLAGES 164
+L G PG GKT I +A ++ G PE + +K GE
Sbjct: 46 PVLIGEPGVGKTAIVEGLAQR------IVKGDVPEGLKGKRIVSLQMGSLLAGAKYRGEF 99
Query: 165 ESNLRKAFEEADKNSPSII-FIDELDAI 191
E L+ +E ++ +I FIDEL +
Sbjct: 100 EERLKAVIQEVVQSQGEVILFIDELHTV 127
>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain
{Adeno-associated virus 2, AAV2 [TaxId: 10804]}
Length = 267
Score = 28.7 bits (64), Expect = 0.39
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 123 ILLYGPPGTGKTLIARAVANETG 145
I L+GP TGKT IA A+A+
Sbjct: 107 IWLFGPATTGKTNIAEAIAHTVP 129
>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence
recognition protein Ffh {Archaeon Acidianus ambivalens
[TaxId: 2283]}
Length = 211
Score = 28.6 bits (63), Expect = 0.39
Identities = 9/17 (52%), Positives = 10/17 (58%)
Query: 118 KPPRGILLYGPPGTGKT 134
K P I+L G GTGK
Sbjct: 10 KIPYVIMLVGVQGTGKA 26
>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation
factor DnaA {Aquifex aeolicus [TaxId: 63363]}
Length = 213
Score = 28.6 bits (63), Expect = 0.40
Identities = 16/81 (19%), Positives = 29/81 (35%), Gaps = 2/81 (2%)
Query: 118 KPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADK 177
I +YG GTGKT + +A NE + + E + E
Sbjct: 34 SLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQAMVEHLKKGTINEFRN 93
Query: 178 N--SPSIIFIDELDAIAPKRE 196
S ++ +D++ ++ K
Sbjct: 94 MYKSVDLLLLDDVQFLSGKER 114
>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 224
Score = 28.5 bits (62), Expect = 0.46
Identities = 9/37 (24%), Positives = 17/37 (45%)
Query: 123 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSK 159
+++ G PG GKT +A+E + E+ +
Sbjct: 39 MIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNAS 75
>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 186
Score = 28.4 bits (62), Expect = 0.51
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 121 RGILLYGPPGTGKTLIARAVANETGAFFFL 150
R I++ GP GTGK+ + + + E F
Sbjct: 2 RPIVISGPSGTGKSTLLKKLFAEYPDSFGF 31
>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal
recognition particle receptor FtsY {Thermotoga maritima
[TaxId: 2336]}
Length = 213
Score = 28.2 bits (62), Expect = 0.51
Identities = 9/17 (52%), Positives = 12/17 (70%)
Query: 118 KPPRGILLYGPPGTGKT 134
+PP I++ G GTGKT
Sbjct: 9 EPPFVIMVVGVNGTGKT 25
>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 190
Score = 28.0 bits (61), Expect = 0.54
Identities = 9/30 (30%), Positives = 16/30 (53%)
Query: 121 RGILLYGPPGTGKTLIARAVANETGAFFFL 150
R ++L GP G GK+ + + + E + F
Sbjct: 1 RPVVLSGPSGAGKSTLLKKLFQEHSSIFGF 30
>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus
acidocaldarius [TaxId: 2285]}
Length = 194
Score = 28.1 bits (61), Expect = 0.59
Identities = 11/83 (13%), Positives = 19/83 (22%), Gaps = 8/83 (9%)
Query: 123 ILLYGPPGTGKTLIARAVANETGAFFFLI--------NGPEIMSKLAGESESNLRKAFEE 174
++ G PG GK+ + V + + +RK E
Sbjct: 4 GIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFMLATALKLGYAKDRDEMRKLSVE 63
Query: 175 ADKNSPSIIFIDELDAIAPKREK 197
K + E
Sbjct: 64 KQKKLQIDAAKGIAEEARAGGEG 86
>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein
Aq_1292 {Aquifex aeolicus [TaxId: 63363]}
Length = 178
Score = 28.0 bits (61), Expect = 0.61
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 123 ILLYGPPGTGKTLIARAVANE 143
I++ G PG GKT + + +
Sbjct: 3 IIITGEPGVGKTTLVKKIVER 23
>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase
domain {Bacteriophage T7 [TaxId: 10760]}
Length = 277
Score = 28.1 bits (61), Expect = 0.64
Identities = 7/26 (26%), Positives = 11/26 (42%)
Query: 116 GVKPPRGILLYGPPGTGKTLIARAVA 141
G + I++ G GK+ R A
Sbjct: 31 GARGGEVIMVTSGSGMGKSTFVRQQA 56
>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus
voltae [TaxId: 2188]}
Length = 190
Score = 28.0 bits (61), Expect = 0.66
Identities = 5/20 (25%), Positives = 11/20 (55%)
Query: 123 ILLYGPPGTGKTLIARAVAN 142
+++ G PG G T ++ +
Sbjct: 4 VVVTGVPGVGSTTSSQLAMD 23
>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS
kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}
Length = 208
Score = 27.9 bits (61), Expect = 0.69
Identities = 6/25 (24%), Positives = 12/25 (48%)
Query: 118 KPPRGILLYGPPGTGKTLIARAVAN 142
+ I L G +GK+ +A + +
Sbjct: 22 QRGLTIWLTGLSASGKSTLAVELEH 46
>d1pvaa_ a.39.1.4 (A:) Parvalbumin {Pike (Esox lucius) [TaxId:
8010]}
Length = 109
Score = 27.2 bits (60), Expect = 0.70
Identities = 8/35 (22%), Positives = 18/35 (51%)
Query: 157 MSKLAGESESNLRKAFEEADKNSPSIIFIDELDAI 191
+ L S ++++K F+ D ++ I +EL +
Sbjct: 32 LVGLKAMSANDVKKVFKAIDADASGFIEEEELKFV 66
>d1jc2a_ a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus) [TaxId:
9031]}
Length = 75
Score = 26.4 bits (58), Expect = 0.71
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 162 GESESNLRKAFEEADKNSPSIIFIDEL 188
G+SE L F DKN+ I I+EL
Sbjct: 5 GKSEEELANCFRIFDKNADGFIDIEEL 31
>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal
recognition particle receptor FtsY {Escherichia coli
[TaxId: 562]}
Length = 211
Score = 27.7 bits (61), Expect = 0.78
Identities = 9/17 (52%), Positives = 10/17 (58%)
Query: 118 KPPRGILLYGPPGTGKT 134
K P IL+ G G GKT
Sbjct: 7 KAPFVILMVGVNGVGKT 23
>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide
biosynthesis protein MobB {Escherichia coli [TaxId:
562]}
Length = 170
Score = 27.3 bits (59), Expect = 0.91
Identities = 6/24 (25%), Positives = 10/24 (41%)
Query: 123 ILLYGPPGTGKTLIARAVANETGA 146
+ GTGKT + + + A
Sbjct: 5 LAFAAWSGTGKTTLLKKLIPALCA 28
>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human
(Homo sapiens) [TaxId: 9606]}
Length = 178
Score = 27.5 bits (60), Expect = 0.94
Identities = 6/32 (18%), Positives = 13/32 (40%), Gaps = 1/32 (3%)
Query: 121 RGILLYGPPGTGK-TLIARAVANETGAFFFLI 151
+ ++L G G G+ + + F + I
Sbjct: 4 KTLVLLGAHGVGRRHIKNTLITKHPDRFAYPI 35
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus
type 2 [TaxId: 11060]}
Length = 305
Score = 27.2 bits (59), Expect = 1.3
Identities = 5/15 (33%), Positives = 7/15 (46%)
Query: 123 ILLYGPPGTGKTLIA 137
++ PG GKT
Sbjct: 12 TIMDLHPGAGKTKRY 26
>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus
thermophilus [TaxId: 274]}
Length = 315
Score = 27.0 bits (59), Expect = 1.4
Identities = 23/90 (25%), Positives = 34/90 (37%), Gaps = 13/90 (14%)
Query: 118 KPPRGILLYGPPGTGKTLIARAVANE---TGAFFFLINGPEIM-----SKLAGESESNLR 169
+P L GP G GKT +A+ +A T I+ E M S+L G +
Sbjct: 51 RPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVSRLIGAPPGYVG 110
Query: 170 KA-----FEEADKNSPSIIFIDELDAIAPK 194
E + S+I DE++ P
Sbjct: 111 YEEGGQLTEAVRRRPYSVILFDEIEKAHPD 140
>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 227
Score = 27.0 bits (58), Expect = 1.5
Identities = 14/36 (38%), Positives = 19/36 (52%)
Query: 123 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMS 158
+L YGPPGTGKT A+A E + E+ +
Sbjct: 38 LLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNA 73
>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 213
Score = 26.8 bits (58), Expect = 1.5
Identities = 5/34 (14%), Positives = 12/34 (35%)
Query: 123 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEI 156
I + G +GK+ + + G ++
Sbjct: 5 IGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQV 38
>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia
coli, RepD [TaxId: 562]}
Length = 306
Score = 27.0 bits (58), Expect = 1.5
Identities = 5/20 (25%), Positives = 9/20 (45%), Gaps = 2/20 (10%)
Query: 123 ILLYGPPGTGKT--LIARAV 140
L+ G+GKT + +
Sbjct: 17 CLVLAGAGSGKTRVITNKIA 36
>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA
{Escherichia coli [TaxId: 562]}
Length = 296
Score = 26.9 bits (58), Expect = 1.7
Identities = 9/24 (37%), Positives = 11/24 (45%)
Query: 118 KPPRGILLYGPPGTGKTLIARAVA 141
P + G G GKT I+ A A
Sbjct: 6 NIPPYLFFTGKGGVGKTSISCATA 29
>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence
recognition protein Ffh {Thermus aquaticus [TaxId: 271]}
Length = 207
Score = 26.6 bits (58), Expect = 1.7
Identities = 7/18 (38%), Positives = 9/18 (50%)
Query: 117 VKPPRGILLYGPPGTGKT 134
+K L G G+GKT
Sbjct: 7 LKDRNLWFLVGLQGSGKT 24
>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 198
Score = 26.3 bits (56), Expect = 2.4
Identities = 7/35 (20%), Positives = 13/35 (37%)
Query: 112 FKAIGVKPPRGILLYGPPGTGKTLIARAVANETGA 146
AI + + G +GKT +A ++
Sbjct: 14 ILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTLRE 48
>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli
[TaxId: 562]}
Length = 308
Score = 26.2 bits (57), Expect = 2.4
Identities = 9/47 (19%), Positives = 14/47 (29%)
Query: 97 QIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANE 143
I + G + P I + G GK+ AR +
Sbjct: 57 YISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQAL 103
>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId:
562]}
Length = 205
Score = 26.0 bits (56), Expect = 2.6
Identities = 5/27 (18%), Positives = 12/27 (44%)
Query: 123 ILLYGPPGTGKTLIARAVANETGAFFF 149
++ P G GK+ + +A+ +
Sbjct: 5 YIVSAPSGAGKSSLIQALLKTQPLYDT 31
>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho,
ATPase domain {Escherichia coli [TaxId: 562]}
Length = 289
Score = 26.1 bits (57), Expect = 2.7
Identities = 7/24 (29%), Positives = 12/24 (50%)
Query: 123 ILLYGPPGTGKTLIARAVANETGA 146
L+ PP GKT++ + +A
Sbjct: 46 GLIVAPPKAGKTMLLQNIAQSIAY 69
>g1f2t.1 c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furiosus
[TaxId: 2261]}
Length = 292
Score = 26.3 bits (56), Expect = 2.7
Identities = 9/31 (29%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 112 FKAIGVKPPRGI-LLYGPPGTGKTLIARAVA 141
V+ GI L+ G G+GK+ + A+
Sbjct: 14 HSDTVVEFKEGINLIIGQNGSGKSSLLDAIL 44
>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 166
Score = 25.8 bits (55), Expect = 2.8
Identities = 7/37 (18%), Positives = 11/37 (29%), Gaps = 4/37 (10%)
Query: 123 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSK 159
+L G GKT + + N+ P
Sbjct: 3 LLFLGLDNAGKTTLLHMLKND----RLATLQPTWHPT 35
>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain
{Mycoplasma pneumoniae [TaxId: 2104]}
Length = 177
Score = 25.7 bits (56), Expect = 2.9
Identities = 8/19 (42%), Positives = 10/19 (52%)
Query: 121 RGILLYGPPGTGKTLIARA 139
G+LL G G GK+ A
Sbjct: 16 VGVLLTGRSGIGKSECALD 34
>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal
recognition particle receptor FtsY {Thermus aquaticus
[TaxId: 271]}
Length = 207
Score = 25.8 bits (56), Expect = 2.9
Identities = 7/17 (41%), Positives = 9/17 (52%)
Query: 118 KPPRGILLYGPPGTGKT 134
R +L+ G G GKT
Sbjct: 4 PKGRVVLVVGVNGVGKT 20
>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase
PF2015 {Pyrococcus furiosus [TaxId: 2261]}
Length = 200
Score = 25.9 bits (55), Expect = 3.0
Identities = 9/17 (52%), Positives = 10/17 (58%)
Query: 121 RGILLYGPPGTGKTLIA 137
L+ P G GKTLIA
Sbjct: 24 TNCLIVLPTGLGKTLIA 40
>d2hf5a1 a.39.1.5 (A:81-113) Troponin C {Human (Homo sapiens),
cardiac isoform [TaxId: 9606]}
Length = 33
Score = 23.3 bits (51), Expect = 3.5
Identities = 10/25 (40%), Positives = 13/25 (52%)
Query: 164 SESNLRKAFEEADKNSPSIIFIDEL 188
SE +R+AF DK+ I EL
Sbjct: 1 SEEEIREAFRVFDKDGNGYISAAEL 25
>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL2 [TaxId: 10090]}
Length = 165
Score = 25.4 bits (54), Expect = 3.6
Identities = 8/35 (22%), Positives = 12/35 (34%), Gaps = 4/35 (11%)
Query: 123 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEIM 157
+L+ G GKT I + E P +
Sbjct: 5 LLMLGLDNAGKTTILKKFNGE----DVDTISPTLG 35
>d1tiza_ a.39.1.5 (A:) Calmodulin-related protein T21P5.17 {Thale
cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 67
Score = 24.1 bits (52), Expect = 3.7
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 166 SNLRKAFEEADKNSPSIIFIDEL 188
S+ ++ FE+ DKN + +DE
Sbjct: 1 SSAKRVFEKFDKNKDGKLSLDEF 23
>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus
stearothermophilus, PcrA [TaxId: 1422]}
Length = 318
Score = 25.8 bits (55), Expect = 3.8
Identities = 7/20 (35%), Positives = 10/20 (50%), Gaps = 2/20 (10%)
Query: 123 ILLYGPPGTGKT--LIARAV 140
+L+ G+GKT L R
Sbjct: 27 LLIMAGAGSGKTRVLTHRIA 46
>d1nyaa_ a.39.1.5 (A:) Calerythrin {Saccharopolyspora erythraea
[TaxId: 1836]}
Length = 176
Score = 25.4 bits (54), Expect = 4.4
Identities = 5/33 (15%), Positives = 12/33 (36%)
Query: 162 GESESNLRKAFEEADKNSPSIIFIDELDAIAPK 194
+ L+K F+ D + + + + A
Sbjct: 3 AIASDRLKKRFDRWDFDGNGALERADFEKEAQH 35
>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK
{Escherichia coli [TaxId: 562]}
Length = 327
Score = 25.6 bits (55), Expect = 4.6
Identities = 15/52 (28%), Positives = 21/52 (40%), Gaps = 7/52 (13%)
Query: 90 GCRKQLAQIKEMVE-LPLRHPSLFKAI------GVKPPRGILLYGPPGTGKT 134
G R LAQ +VE RH +L + + + G PG GK+
Sbjct: 17 GERATLAQAMTLVESRHPRHQALSTQLLDAIMPYCGNTLRLGVTGTPGAGKS 68
>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain
{Lactobacillus casei [TaxId: 1582]}
Length = 176
Score = 25.3 bits (55), Expect = 5.1
Identities = 7/19 (36%), Positives = 10/19 (52%)
Query: 121 RGILLYGPPGTGKTLIARA 139
G+L+ G G GK+ A
Sbjct: 15 LGVLITGDSGVGKSETALE 33
>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain
{Staphylococcus xylosus [TaxId: 1288]}
Length = 169
Score = 24.9 bits (54), Expect = 5.3
Identities = 7/19 (36%), Positives = 10/19 (52%)
Query: 121 RGILLYGPPGTGKTLIARA 139
G+L+ G G GK+ A
Sbjct: 16 VGVLITGDSGIGKSETALE 34
>d1wlza1 a.39.1.7 (A:229-311) DJ-1-binding protein, DJBP {Human
(Homo sapiens) [TaxId: 9606]}
Length = 83
Score = 24.3 bits (52), Expect = 5.3
Identities = 5/27 (18%), Positives = 11/27 (40%), Gaps = 3/27 (11%)
Query: 155 EIMSKL---AGESESNLRKAFEEADKN 178
+I+++L + + FE D
Sbjct: 6 DILARLHKAVTSHYHAITQEFENFDTM 32
>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL3 [TaxId: 10090]}
Length = 176
Score = 24.9 bits (53), Expect = 5.5
Identities = 12/36 (33%), Positives = 17/36 (47%)
Query: 123 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMS 158
ILL G GKT + + +A+E + G I S
Sbjct: 19 ILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKS 54
>d1fi5a_ a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus), cardiac
isoform [TaxId: 9031]}
Length = 81
Score = 23.8 bits (51), Expect = 6.5
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 161 AGESESNLRKAFEEADKNSPSIIFIDE 187
G++E L F DKN+ I ++E
Sbjct: 10 KGKTEEELSDLFRMFDKNADGYIDLEE 36
>d1y1xa_ a.39.1.8 (A:) Programmed cell death 6 protein-like protein
{Leishmania major [TaxId: 5664]}
Length = 182
Score = 25.0 bits (53), Expect = 6.6
Identities = 7/29 (24%), Positives = 11/29 (37%)
Query: 163 ESESNLRKAFEEADKNSPSIIFIDELDAI 191
L + F D + I + EL+A
Sbjct: 15 NDNQELMEWFRAVDTDGSGAISVPELNAA 43
>d1s6ia_ a.39.1.5 (A:) Calcium-dependent protein kinase sk5 CLD
{Soybean (Glycine max) [TaxId: 3847]}
Length = 182
Score = 24.6 bits (52), Expect = 7.6
Identities = 9/31 (29%), Positives = 16/31 (51%)
Query: 158 SKLAGESESNLRKAFEEADKNSPSIIFIDEL 188
+L+ E L++ F+ D ++ I DEL
Sbjct: 2 ERLSEEEIGGLKELFKMIDTDNSGTITFDEL 32
>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides
[TaxId: 1063]}
Length = 288
Score = 24.9 bits (54), Expect = 8.2
Identities = 4/21 (19%), Positives = 7/21 (33%)
Query: 123 ILLYGPPGTGKTLIARAVANE 143
I + G G G + +
Sbjct: 7 ISVTGSSGAGTSTVKHTFDQI 27
>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor
beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}
Length = 207
Score = 24.6 bits (52), Expect = 8.5
Identities = 7/24 (29%), Positives = 11/24 (45%)
Query: 121 RGILLYGPPGTGKTLIARAVANET 144
R +L G +GKTL+ +
Sbjct: 1 RAVLFVGLCDSGKTLLFVRLLTGQ 24
>d1c4oa1 c.37.1.19 (A:2-409) Nucleotide excision repair enzyme UvrB
{Thermus thermophilus [TaxId: 274]}
Length = 408
Score = 24.8 bits (53), Expect = 8.6
Identities = 10/32 (31%), Positives = 14/32 (43%)
Query: 120 PRGILLYGPPGTGKTLIARAVANETGAFFFLI 151
R + L G GTGKT+ V G ++
Sbjct: 28 ERFVTLLGATGTGKTVTMAKVIEALGRPALVL 59
>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1
ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 276
Score = 24.7 bits (54), Expect = 8.9
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 123 ILLYGPPGTGKTLIARAVAN 142
I L+G G GKT++ + N
Sbjct: 71 IGLFGGAGVGKTVLIMELIN 90
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.140 0.407
Gapped
Lambda K H
0.267 0.0387 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 763,831
Number of extensions: 36919
Number of successful extensions: 311
Number of sequences better than 10.0: 1
Number of HSP's gapped: 300
Number of HSP's successfully gapped: 142
Length of query: 197
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 116
Effective length of database: 1,295,466
Effective search space: 150274056
Effective search space used: 150274056
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (24.0 bits)