BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy6209
         (115 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3HU2|A Chain A, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
 pdb|3HU2|B Chain B, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
 pdb|3HU2|C Chain C, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
 pdb|3HU2|D Chain D, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
 pdb|3HU2|E Chain E, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
 pdb|3HU2|F Chain F, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
          Length = 489

 Score =  164 bits (415), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 74/94 (78%), Positives = 85/94 (90%)

Query: 21  IVYGKRIHVLPIDDSVQGLTGNLFEVYLKPYFLEAYRPVHKDDLFIVRGGMRAVEFKIVD 80
           + YGKRIHVLPIDD+V+G+TGNLFEVYLKPYFLEAYRP+ K D+F+VRGGMRAVEFK+V+
Sbjct: 108 VKYGKRIHVLPIDDTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVE 167

Query: 81  TDPAPYCIVAADTVIHCEGDPIKREGEENKPNGV 114
           TDP+PYCIVA DTVIHCEG+PIKRE EE   N V
Sbjct: 168 TDPSPYCIVAPDTVIHCEGEPIKREDEEESLNEV 201


>pdb|3HU1|A Chain A, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
 pdb|3HU1|B Chain B, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
 pdb|3HU1|C Chain C, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
 pdb|3HU1|D Chain D, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
 pdb|3HU1|E Chain E, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
 pdb|3HU1|F Chain F, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
          Length = 489

 Score =  164 bits (415), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 74/94 (78%), Positives = 85/94 (90%)

Query: 21  IVYGKRIHVLPIDDSVQGLTGNLFEVYLKPYFLEAYRPVHKDDLFIVRGGMRAVEFKIVD 80
           + YGKRIHVLPIDD+V+G+TGNLFEVYLKPYFLEAYRP+ K D+F+VRGGMRAVEFK+V+
Sbjct: 108 VKYGKRIHVLPIDDTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVE 167

Query: 81  TDPAPYCIVAADTVIHCEGDPIKREGEENKPNGV 114
           TDP+PYCIVA DTVIHCEG+PIKRE EE   N V
Sbjct: 168 TDPSPYCIVAPDTVIHCEGEPIKREDEEESLNEV 201


>pdb|1E32|A Chain A, Structure Of The N-Terminal Domain And The D1 Aaa Domain
           Of Membrane Fusion Atpase P97
 pdb|1S3S|A Chain A, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
           P47 C
 pdb|1S3S|B Chain B, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
           P47 C
 pdb|1S3S|C Chain C, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
           P47 C
 pdb|1S3S|D Chain D, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
           P47 C
 pdb|1S3S|E Chain E, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
           P47 C
 pdb|1S3S|F Chain F, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
           P47 C
          Length = 458

 Score =  164 bits (414), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 74/94 (78%), Positives = 85/94 (90%)

Query: 21  IVYGKRIHVLPIDDSVQGLTGNLFEVYLKPYFLEAYRPVHKDDLFIVRGGMRAVEFKIVD 80
           + YGKRIHVLPIDD+V+G+TGNLFEVYLKPYFLEAYRP+ K D+F+VRGGMRAVEFK+V+
Sbjct: 108 VKYGKRIHVLPIDDTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVE 167

Query: 81  TDPAPYCIVAADTVIHCEGDPIKREGEENKPNGV 114
           TDP+PYCIVA DTVIHCEG+PIKRE EE   N V
Sbjct: 168 TDPSPYCIVAPDTVIHCEGEPIKREDEEESLNEV 201


>pdb|1R7R|A Chain A, The Crystal Structure Of Murine P97VCP AT 3.6A
          Length = 816

 Score =  164 bits (414), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 74/94 (78%), Positives = 85/94 (90%)

Query: 21  IVYGKRIHVLPIDDSVQGLTGNLFEVYLKPYFLEAYRPVHKDDLFIVRGGMRAVEFKIVD 80
           + YGKRIHVLPIDD+V+G+TGNLFEVYLKPYFLEAYRP+ K D+F+VRGGMRAVEFK+V+
Sbjct: 108 VKYGKRIHVLPIDDTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVE 167

Query: 81  TDPAPYCIVAADTVIHCEGDPIKREGEENKPNGV 114
           TDP+PYCIVA DTVIHCEG+PIKRE EE   N V
Sbjct: 168 TDPSPYCIVAPDTVIHCEGEPIKREDEEESLNEV 201


>pdb|3CF1|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
 pdb|3CF1|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
 pdb|3CF1|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
 pdb|3CF2|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
 pdb|3CF2|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
 pdb|3CF2|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
 pdb|3CF2|D Chain D, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
 pdb|3CF3|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADP
 pdb|3CF3|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADP
 pdb|3CF3|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADP
          Length = 806

 Score =  164 bits (414), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 74/94 (78%), Positives = 85/94 (90%)

Query: 21  IVYGKRIHVLPIDDSVQGLTGNLFEVYLKPYFLEAYRPVHKDDLFIVRGGMRAVEFKIVD 80
           + YGKRIHVLPIDD+V+G+TGNLFEVYLKPYFLEAYRP+ K D+F+VRGGMRAVEFK+V+
Sbjct: 108 VKYGKRIHVLPIDDTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVE 167

Query: 81  TDPAPYCIVAADTVIHCEGDPIKREGEENKPNGV 114
           TDP+PYCIVA DTVIHCEG+PIKRE EE   N V
Sbjct: 168 TDPSPYCIVAPDTVIHCEGEPIKREDEEESLNEV 201


>pdb|3HU3|A Chain A, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
 pdb|3HU3|B Chain B, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
          Length = 489

 Score =  162 bits (409), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 73/94 (77%), Positives = 84/94 (89%)

Query: 21  IVYGKRIHVLPIDDSVQGLTGNLFEVYLKPYFLEAYRPVHKDDLFIVRGGMRAVEFKIVD 80
           + YGKRIHVLPIDD+V+G+TGNLFEVYLKPYFLEAYRP+ K D+F+V GGMRAVEFK+V+
Sbjct: 108 VKYGKRIHVLPIDDTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVHGGMRAVEFKVVE 167

Query: 81  TDPAPYCIVAADTVIHCEGDPIKREGEENKPNGV 114
           TDP+PYCIVA DTVIHCEG+PIKRE EE   N V
Sbjct: 168 TDPSPYCIVAPDTVIHCEGEPIKREDEEESLNEV 201


>pdb|2PJH|B Chain B, Strctural Model Of The P97 N Domain- Npl4 Ubd Complex
          Length = 193

 Score =  161 bits (407), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 74/94 (78%), Positives = 85/94 (90%)

Query: 21  IVYGKRIHVLPIDDSVQGLTGNLFEVYLKPYFLEAYRPVHKDDLFIVRGGMRAVEFKIVD 80
           + YGKRIHVLPIDD+V+G+TGNLFEVYLKPYFLEAYRP+ K D+F+VRGGMRAVEFK+V+
Sbjct: 88  VKYGKRIHVLPIDDTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVE 147

Query: 81  TDPAPYCIVAADTVIHCEGDPIKREGEENKPNGV 114
           TDP+PYCIVA DTVIHCEG+PIKRE EE   N V
Sbjct: 148 TDPSPYCIVAPDTVIHCEGEPIKREDEEESLNEV 181


>pdb|3QC8|A Chain A, Crystal Structure Of Faf1 Ubx Domain In Complex With
           P97VCP N DOMAIN Reveals The Conserved Fcisp Touch-Turn
           Motif Of Ubx Domain Suffering Conformational Change
          Length = 178

 Score =  159 bits (403), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 72/88 (81%), Positives = 83/88 (94%)

Query: 21  IVYGKRIHVLPIDDSVQGLTGNLFEVYLKPYFLEAYRPVHKDDLFIVRGGMRAVEFKIVD 80
           + YGKRIHVLPIDD+V+G+TGNLFEVYLKPYFLEAYRP+ K D+F+VRGGMRAVEFK+V+
Sbjct: 90  VKYGKRIHVLPIDDTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVE 149

Query: 81  TDPAPYCIVAADTVIHCEGDPIKREGEE 108
           TDP+PYCIVA DTVIHCEG+PIKRE EE
Sbjct: 150 TDPSPYCIVAPDTVIHCEGEPIKREDEE 177


>pdb|3QWZ|A Chain A, Crystal Structure Of Faf1 Ubx-P97n-Domain Complex
          Length = 211

 Score =  159 bits (403), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 73/94 (77%), Positives = 84/94 (89%)

Query: 21  IVYGKRIHVLPIDDSVQGLTGNLFEVYLKPYFLEAYRPVHKDDLFIVRGGMRAVEFKIVD 80
           + YGKRIHVLPIDD+V+G+TGNLFEVYLKPYFLEAYRP+ K D+F+VRGGMRAVEF +V+
Sbjct: 111 VKYGKRIHVLPIDDTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFXVVE 170

Query: 81  TDPAPYCIVAADTVIHCEGDPIKREGEENKPNGV 114
           TDP+PYCIVA DTVIHCEG+PIKRE EE   N V
Sbjct: 171 TDPSPYCIVAPDTVIHCEGEPIKREDEEESLNEV 204


>pdb|3TIW|A Chain A, Crystal Structure Of P97n In Complex With The C-Terminus
           Of Gp78
 pdb|3TIW|B Chain B, Crystal Structure Of P97n In Complex With The C-Terminus
           Of Gp78
          Length = 187

 Score =  147 bits (372), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 65/80 (81%), Positives = 76/80 (95%)

Query: 21  IVYGKRIHVLPIDDSVQGLTGNLFEVYLKPYFLEAYRPVHKDDLFIVRGGMRAVEFKIVD 80
           + YGKRIHVLPIDD+V+G+TGNLFEVYLKPYFLEAYRP+ K D+F+VRGGMRAVEFK+V+
Sbjct: 108 VKYGKRIHVLPIDDTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVE 167

Query: 81  TDPAPYCIVAADTVIHCEGD 100
           TDP+PYCIVA DTVIHCEG+
Sbjct: 168 TDPSPYCIVAPDTVIHCEGE 187


>pdb|3QQ7|A Chain A, Crystal Structure Of The P97 N-Terminal Domain
 pdb|3QQ8|A Chain A, Crystal Structure Of P97-N In Complex With Faf1-Ubx
          Length = 186

 Score =  147 bits (371), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 65/80 (81%), Positives = 76/80 (95%)

Query: 21  IVYGKRIHVLPIDDSVQGLTGNLFEVYLKPYFLEAYRPVHKDDLFIVRGGMRAVEFKIVD 80
           + YGKRIHVLPIDD+V+G+TGNLFEVYLKPYFLEAYRP+ K D+F+VRGGMRAVEFK+V+
Sbjct: 107 VKYGKRIHVLPIDDTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVE 166

Query: 81  TDPAPYCIVAADTVIHCEGD 100
           TDP+PYCIVA DTVIHCEG+
Sbjct: 167 TDPSPYCIVAPDTVIHCEGE 186


>pdb|2PL5|A Chain A, Crystal Structure Of Homoserine O-acetyltransferase From
           Leptospira Interrogans
          Length = 366

 Score = 26.2 bits (56), Expect = 4.9,   Method: Composition-based stats.
 Identities = 12/28 (42%), Positives = 16/28 (57%)

Query: 69  GGMRAVEFKIVDTDPAPYCIVAADTVIH 96
           GGM+A+E+ I   +    CIV A T  H
Sbjct: 155 GGMQALEWSIAYPNSLSNCIVMASTAEH 182


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.324    0.145    0.447 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,677,852
Number of Sequences: 62578
Number of extensions: 142057
Number of successful extensions: 271
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 259
Number of HSP's gapped (non-prelim): 12
length of query: 115
length of database: 14,973,337
effective HSP length: 78
effective length of query: 37
effective length of database: 10,092,253
effective search space: 373413361
effective search space used: 373413361
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 45 (21.9 bits)