BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6209
(115 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6GL04|TERA_XENTR Transitional endoplasmic reticulum ATPase OS=Xenopus tropicalis
GN=vcp PE=2 SV=1
Length = 805
Score = 164 bits (415), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 74/94 (78%), Positives = 85/94 (90%)
Query: 21 IVYGKRIHVLPIDDSVQGLTGNLFEVYLKPYFLEAYRPVHKDDLFIVRGGMRAVEFKIVD 80
+ YGKRIHVLPIDD+V+G+TGNLFEVYLKPYFLEAYRP+ K D+F+VRGGMRAVEFK+V+
Sbjct: 108 VKYGKRIHVLPIDDTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVE 167
Query: 81 TDPAPYCIVAADTVIHCEGDPIKREGEENKPNGV 114
TDP+PYCIVA DTVIHCEG+PIKRE EE N V
Sbjct: 168 TDPSPYCIVAPDTVIHCEGEPIKREDEEESLNEV 201
>sp|Q7ZU99|TERA_DANRE Transitional endoplasmic reticulum ATPase OS=Danio rerio GN=vcp
PE=1 SV=1
Length = 806
Score = 164 bits (415), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 74/94 (78%), Positives = 85/94 (90%)
Query: 21 IVYGKRIHVLPIDDSVQGLTGNLFEVYLKPYFLEAYRPVHKDDLFIVRGGMRAVEFKIVD 80
+ YGKRIHVLPIDD+V+G+TGNLFEVYLKPYFLEAYRP+ K D+F+VRGGMRAVEFK+V+
Sbjct: 108 VKYGKRIHVLPIDDTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVE 167
Query: 81 TDPAPYCIVAADTVIHCEGDPIKREGEENKPNGV 114
TDP+PYCIVA DTVIHCEG+PIKRE EE N V
Sbjct: 168 TDPSPYCIVAPDTVIHCEGEPIKREDEEESLNEV 201
>sp|P46462|TERA_RAT Transitional endoplasmic reticulum ATPase OS=Rattus norvegicus
GN=Vcp PE=1 SV=3
Length = 806
Score = 164 bits (414), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 74/94 (78%), Positives = 85/94 (90%)
Query: 21 IVYGKRIHVLPIDDSVQGLTGNLFEVYLKPYFLEAYRPVHKDDLFIVRGGMRAVEFKIVD 80
+ YGKRIHVLPIDD+V+G+TGNLFEVYLKPYFLEAYRP+ K D+F+VRGGMRAVEFK+V+
Sbjct: 108 VKYGKRIHVLPIDDTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVE 167
Query: 81 TDPAPYCIVAADTVIHCEGDPIKREGEENKPNGV 114
TDP+PYCIVA DTVIHCEG+PIKRE EE N V
Sbjct: 168 TDPSPYCIVAPDTVIHCEGEPIKREDEEESLNEV 201
>sp|Q01853|TERA_MOUSE Transitional endoplasmic reticulum ATPase OS=Mus musculus GN=Vcp
PE=1 SV=4
Length = 806
Score = 164 bits (414), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 74/94 (78%), Positives = 85/94 (90%)
Query: 21 IVYGKRIHVLPIDDSVQGLTGNLFEVYLKPYFLEAYRPVHKDDLFIVRGGMRAVEFKIVD 80
+ YGKRIHVLPIDD+V+G+TGNLFEVYLKPYFLEAYRP+ K D+F+VRGGMRAVEFK+V+
Sbjct: 108 VKYGKRIHVLPIDDTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVE 167
Query: 81 TDPAPYCIVAADTVIHCEGDPIKREGEENKPNGV 114
TDP+PYCIVA DTVIHCEG+PIKRE EE N V
Sbjct: 168 TDPSPYCIVAPDTVIHCEGEPIKREDEEESLNEV 201
>sp|P55072|TERA_HUMAN Transitional endoplasmic reticulum ATPase OS=Homo sapiens GN=VCP
PE=1 SV=4
Length = 806
Score = 164 bits (414), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 74/94 (78%), Positives = 85/94 (90%)
Query: 21 IVYGKRIHVLPIDDSVQGLTGNLFEVYLKPYFLEAYRPVHKDDLFIVRGGMRAVEFKIVD 80
+ YGKRIHVLPIDD+V+G+TGNLFEVYLKPYFLEAYRP+ K D+F+VRGGMRAVEFK+V+
Sbjct: 108 VKYGKRIHVLPIDDTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVE 167
Query: 81 TDPAPYCIVAADTVIHCEGDPIKREGEENKPNGV 114
TDP+PYCIVA DTVIHCEG+PIKRE EE N V
Sbjct: 168 TDPSPYCIVAPDTVIHCEGEPIKREDEEESLNEV 201
>sp|Q3ZBT1|TERA_BOVIN Transitional endoplasmic reticulum ATPase OS=Bos taurus GN=VCP PE=2
SV=1
Length = 806
Score = 164 bits (414), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 74/94 (78%), Positives = 85/94 (90%)
Query: 21 IVYGKRIHVLPIDDSVQGLTGNLFEVYLKPYFLEAYRPVHKDDLFIVRGGMRAVEFKIVD 80
+ YGKRIHVLPIDD+V+G+TGNLFEVYLKPYFLEAYRP+ K D+F+VRGGMRAVEFK+V+
Sbjct: 108 VKYGKRIHVLPIDDTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVE 167
Query: 81 TDPAPYCIVAADTVIHCEGDPIKREGEENKPNGV 114
TDP+PYCIVA DTVIHCEG+PIKRE EE N V
Sbjct: 168 TDPSPYCIVAPDTVIHCEGEPIKREDEEESLNEV 201
>sp|P03974|TERA_PIG Transitional endoplasmic reticulum ATPase OS=Sus scrofa GN=VCP PE=1
SV=5
Length = 806
Score = 164 bits (414), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 74/94 (78%), Positives = 85/94 (90%)
Query: 21 IVYGKRIHVLPIDDSVQGLTGNLFEVYLKPYFLEAYRPVHKDDLFIVRGGMRAVEFKIVD 80
+ YGKRIHVLPIDD+V+G+TGNLFEVYLKPYFLEAYRP+ K D+F+VRGGMRAVEFK+V+
Sbjct: 108 VKYGKRIHVLPIDDTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVE 167
Query: 81 TDPAPYCIVAADTVIHCEGDPIKREGEENKPNGV 114
TDP+PYCIVA DTVIHCEG+PIKRE EE N V
Sbjct: 168 TDPSPYCIVAPDTVIHCEGEPIKREDEEESLNEV 201
>sp|P23787|TERA_XENLA Transitional endoplasmic reticulum ATPase OS=Xenopus laevis GN=vcp
PE=1 SV=3
Length = 805
Score = 163 bits (413), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 73/94 (77%), Positives = 85/94 (90%)
Query: 21 IVYGKRIHVLPIDDSVQGLTGNLFEVYLKPYFLEAYRPVHKDDLFIVRGGMRAVEFKIVD 80
+ YGKR+HVLPIDD+V+G+TGNLFEVYLKPYFLEAYRP+ K D+F+VRGGMRAVEFK+V+
Sbjct: 108 VKYGKRVHVLPIDDTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVE 167
Query: 81 TDPAPYCIVAADTVIHCEGDPIKREGEENKPNGV 114
TDP+PYCIVA DTVIHCEG+PIKRE EE N V
Sbjct: 168 TDPSPYCIVAPDTVIHCEGEPIKREDEEESLNEV 201
>sp|Q9LZF6|CD48E_ARATH Cell division control protein 48 homolog E OS=Arabidopsis thaliana
GN=CDC48E PE=1 SV=2
Length = 810
Score = 148 bits (374), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 63/88 (71%), Positives = 79/88 (89%)
Query: 21 IVYGKRIHVLPIDDSVQGLTGNLFEVYLKPYFLEAYRPVHKDDLFIVRGGMRAVEFKIVD 80
+ YGKR+H+LP+DD+V+G+TGNLF+ YLKPYFLEAYRPV K DLF+VRGGMR+VEFK+++
Sbjct: 112 VKYGKRVHILPVDDTVEGVTGNLFDAYLKPYFLEAYRPVRKGDLFLVRGGMRSVEFKVIE 171
Query: 81 TDPAPYCIVAADTVIHCEGDPIKREGEE 108
TDPA YC+VA DT I CEG+P+KRE EE
Sbjct: 172 TDPAEYCVVAPDTEIFCEGEPVKREDEE 199
>sp|P54609|CD48A_ARATH Cell division control protein 48 homolog A OS=Arabidopsis thaliana
GN=CDC48A PE=1 SV=1
Length = 809
Score = 148 bits (374), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 63/88 (71%), Positives = 79/88 (89%)
Query: 21 IVYGKRIHVLPIDDSVQGLTGNLFEVYLKPYFLEAYRPVHKDDLFIVRGGMRAVEFKIVD 80
+ YGKR+H+LP+DD+V+G+TGNLF+ YLKPYFLEAYRPV K DLF+VRGGMR+VEFK+++
Sbjct: 112 VKYGKRVHILPVDDTVEGVTGNLFDAYLKPYFLEAYRPVRKGDLFLVRGGMRSVEFKVIE 171
Query: 81 TDPAPYCIVAADTVIHCEGDPIKREGEE 108
TDPA YC+VA DT I CEG+P+KRE EE
Sbjct: 172 TDPAEYCVVAPDTEIFCEGEPVKREDEE 199
>sp|P54811|TERA1_CAEEL Transitional endoplasmic reticulum ATPase homolog 1
OS=Caenorhabditis elegans GN=cdc-48.1 PE=1 SV=1
Length = 809
Score = 145 bits (367), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 64/95 (67%), Positives = 79/95 (83%)
Query: 20 QIVYGKRIHVLPIDDSVQGLTGNLFEVYLKPYFLEAYRPVHKDDLFIVRGGMRAVEFKIV 79
+ YG RIHVLPIDD+++GLTGNLF+V+LKPYFLEAYRP+HK D+F V+ MR VEFK+V
Sbjct: 113 NLSYGTRIHVLPIDDTIEGLTGNLFDVFLKPYFLEAYRPLHKGDIFTVQAAMRTVEFKVV 172
Query: 80 DTDPAPYCIVAADTVIHCEGDPIKREGEENKPNGV 114
+T+PAP CIV+ DT+IH EGDPIKRE EE N +
Sbjct: 173 ETEPAPACIVSPDTMIHYEGDPIKREEEEESMNDI 207
>sp|P54774|CDC48_SOYBN Cell division cycle protein 48 homolog OS=Glycine max GN=CDC48 PE=2
SV=1
Length = 807
Score = 145 bits (366), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 62/88 (70%), Positives = 78/88 (88%)
Query: 21 IVYGKRIHVLPIDDSVQGLTGNLFEVYLKPYFLEAYRPVHKDDLFIVRGGMRAVEFKIVD 80
+ YGKR+H+LPIDD+++G+TGNLF+ +LKPYFLEAYRPV K DLF+VRGGMR+VEFK+V+
Sbjct: 113 VKYGKRVHILPIDDTIEGVTGNLFDAFLKPYFLEAYRPVRKGDLFLVRGGMRSVEFKVVE 172
Query: 81 TDPAPYCIVAADTVIHCEGDPIKREGEE 108
TDP YC+VA DT I CEG+P+KRE EE
Sbjct: 173 TDPGEYCVVAPDTEIFCEGEPLKREDEE 200
>sp|Q9SCN8|CD48D_ARATH Cell division control protein 48 homolog D OS=Arabidopsis thaliana
GN=CDC48D PE=1 SV=1
Length = 815
Score = 143 bits (360), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 59/88 (67%), Positives = 78/88 (88%)
Query: 21 IVYGKRIHVLPIDDSVQGLTGNLFEVYLKPYFLEAYRPVHKDDLFIVRGGMRAVEFKIVD 80
+ YG R+H+LP+DD+++G++GN+F+ YLKPYFLEAYRPV K DLF+VRGGMR++EFK+++
Sbjct: 113 VKYGNRVHILPLDDTIEGVSGNIFDAYLKPYFLEAYRPVRKGDLFLVRGGMRSIEFKVIE 172
Query: 81 TDPAPYCIVAADTVIHCEGDPIKREGEE 108
TDPA YC+VA DT I CEG+PIKRE EE
Sbjct: 173 TDPAEYCVVAPDTEIFCEGEPIKREDEE 200
>sp|Q7KN62|TERA_DROME Transitional endoplasmic reticulum ATPase TER94 OS=Drosophila
melanogaster GN=TER94 PE=1 SV=1
Length = 801
Score = 143 bits (360), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 66/104 (63%), Positives = 80/104 (76%)
Query: 11 DLLDRQRDIQIVYGKRIHVLPIDDSVQGLTGNLFEVYLKPYFLEAYRPVHKDDLFIVRGG 70
D++ Q + YGKR+ +LPID+S +G+TGNLFE+YLKPYFLEAYRP+H D FIVR
Sbjct: 95 DVVSVQSCPDVKYGKRVRILPIDESTEGVTGNLFEIYLKPYFLEAYRPIHMGDNFIVRAA 154
Query: 71 MRAVEFKIVDTDPAPYCIVAADTVIHCEGDPIKREGEENKPNGV 114
MR +EFK+V TDP PYCIVA +TVI C+GDPIKRE EE N V
Sbjct: 155 MRPIEFKVVLTDPEPYCIVAPETVIFCDGDPIKREEEEESLNAV 198
>sp|P54812|TERA2_CAEEL Transitional endoplasmic reticulum ATPase homolog 2
OS=Caenorhabditis elegans GN=cdc-48.2 PE=1 SV=2
Length = 810
Score = 142 bits (358), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 62/85 (72%), Positives = 75/85 (88%)
Query: 20 QIVYGKRIHVLPIDDSVQGLTGNLFEVYLKPYFLEAYRPVHKDDLFIVRGGMRAVEFKIV 79
Q+ YGKR+HVLPIDD+++GLTGNLF+V+L+PYF +AYRPVHK D+F V+ MR VEFK+V
Sbjct: 112 QLEYGKRVHVLPIDDTIEGLTGNLFDVFLRPYFTDAYRPVHKGDIFTVQAAMRTVEFKVV 171
Query: 80 DTDPAPYCIVAADTVIHCEGDPIKR 104
+TDPAP CIVA DTVIH EGDPIKR
Sbjct: 172 ETDPAPACIVAPDTVIHYEGDPIKR 196
>sp|Q96372|CDC48_CAPAN Cell division cycle protein 48 homolog OS=Capsicum annuum GN=CAFP
PE=2 SV=1
Length = 805
Score = 140 bits (354), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 59/88 (67%), Positives = 77/88 (87%)
Query: 21 IVYGKRIHVLPIDDSVQGLTGNLFEVYLKPYFLEAYRPVHKDDLFIVRGGMRAVEFKIVD 80
+ YGKR+H+LPIDD+++GLTG+LF+ +LKPYFLEAYRP+ K D F+VRGGMR+VEFK+++
Sbjct: 113 VKYGKRVHILPIDDTIEGLTGDLFDAFLKPYFLEAYRPLRKGDNFLVRGGMRSVEFKVIE 172
Query: 81 TDPAPYCIVAADTVIHCEGDPIKREGEE 108
TDP YC+VA DT I CEG+P+KRE EE
Sbjct: 173 TDPGEYCVVAPDTEIFCEGEPVKREDEE 200
>sp|P25694|CDC48_YEAST Cell division control protein 48 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=CDC48 PE=1 SV=3
Length = 835
Score = 135 bits (339), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 61/94 (64%), Positives = 74/94 (78%)
Query: 21 IVYGKRIHVLPIDDSVQGLTGNLFEVYLKPYFLEAYRPVHKDDLFIVRGGMRAVEFKIVD 80
I Y RI VLPI D+++G+TGNLF+V+LKPYF+EAYRPV K D F+VRGGMR VEFK+VD
Sbjct: 118 IKYATRISVLPIADTIEGITGNLFDVFLKPYFVEAYRPVRKGDHFVVRGGMRQVEFKVVD 177
Query: 81 TDPAPYCIVAADTVIHCEGDPIKREGEENKPNGV 114
+P Y +VA DT+IH EG+PI RE EEN N V
Sbjct: 178 VEPEEYAVVAQDTIIHWEGEPINREDEENNMNEV 211
>sp|Q5AWS6|CDC48_EMENI Cell division control protein 48 OS=Emericella nidulans (strain
FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139)
GN=cdc48 PE=1 SV=2
Length = 823
Score = 129 bits (325), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 61/94 (64%), Positives = 73/94 (77%)
Query: 21 IVYGKRIHVLPIDDSVQGLTGNLFEVYLKPYFLEAYRPVHKDDLFIVRGGMRAVEFKIVD 80
I Y KRI VLPI D+V+GLTG+LF+VYL PYF + YRPV + DLF VRGGMR VEFK+V+
Sbjct: 129 IKYAKRIAVLPIADTVEGLTGSLFDVYLAPYFRDGYRPVKQGDLFTVRGGMRQVEFKVVE 188
Query: 81 TDPAPYCIVAADTVIHCEGDPIKREGEENKPNGV 114
DP + IVA DT+IH EG+PI+RE EEN N V
Sbjct: 189 VDPPEFGIVAPDTIIHSEGEPIQREDEENNLNEV 222
>sp|Q9P3A7|CDC48_SCHPO Cell division cycle protein 48 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=cdc48 PE=1 SV=2
Length = 815
Score = 127 bits (318), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 57/90 (63%), Positives = 72/90 (80%)
Query: 21 IVYGKRIHVLPIDDSVQGLTGNLFEVYLKPYFLEAYRPVHKDDLFIVRGGMRAVEFKIVD 80
I Y +RI VLP+ D+V+GLTG+LF+VYLKPYF+EAYRP+ K DLF+VRG MR VEFK+VD
Sbjct: 128 IKYAERISVLPLADTVEGLTGSLFDVYLKPYFVEAYRPIRKGDLFVVRGSMRQVEFKVVD 187
Query: 81 TDPAPYCIVAADTVIHCEGDPIKREGEENK 110
P + IV+ DT+IH EG+PI RE EE+
Sbjct: 188 VAPDEFGIVSQDTIIHWEGEPINREDEESS 217
>sp|Q8SSJ5|CDC48_ENCCU Cell division control protein 48 OS=Encephalitozoon cuniculi
(strain GB-M1) GN=CDC48 PE=1 SV=1
Length = 780
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 56/103 (54%), Gaps = 8/103 (7%)
Query: 17 RDIQIVYGKRIHVLPIDDSVQGLTGNLFEVYLKPYFLEAYRPVHKDDLFIVRGGMRAVEF 76
+DI +V +++ LPI D+V+ + GN+F+ +++P+ + P+ ++ V G+ VEF
Sbjct: 106 KDIPVV--SKLNFLPIKDTVENIRGNIFDEFVRPFLDFNFMPLTTGSIYGVTSGLGRVEF 163
Query: 77 KIVDTDPA-----PYCIVAADTVIHCEGDPIKREGEENKPNGV 114
K+ A + V + T ++C+ + I RE E + N V
Sbjct: 164 KVTKMIDAQDMEIKHGSVTSTTSVYCD-ETISREEVEKEFNMV 205
>sp|A5D1P4|ADDB_PELTS ATP-dependent helicase/deoxyribonuclease subunit B OS=Pelotomaculum
thermopropionicum (strain DSM 13744 / JCM 10971 / SI)
GN=addB PE=3 SV=1
Length = 1157
Score = 33.5 bits (75), Expect = 0.42, Method: Composition-based stats.
Identities = 29/90 (32%), Positives = 41/90 (45%), Gaps = 16/90 (17%)
Query: 5 LTTPCRDLLDRQRDIQIVYGKRIHVLPIDDSVQGLTGNLFEVYLKPYFLEAYRPV-HKDD 63
+T CRD R RDI I+ L DS GL ++F + P F++ RPV H
Sbjct: 330 ITALCRDRGYRYRDIVIL-------LRDVDSYAGLISSIFADHGIPVFIDQKRPVMHHPM 382
Query: 64 LFIVRGGMRAVE--------FKIVDTDPAP 85
+ +VR + AV F+ + TD P
Sbjct: 383 VELVRSALEAVTEDWAFDPVFRYLKTDLVP 412
>sp|Q1Q8P9|RPOB_PSYCK DNA-directed RNA polymerase subunit beta OS=Psychrobacter
cryohalolentis (strain K5) GN=rpoB PE=3 SV=1
Length = 1372
Score = 32.7 bits (73), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 39/86 (45%), Gaps = 5/86 (5%)
Query: 1 MSFRLTTPCRDLLDRQRDIQIVYGKRIHVLPIDDSVQGLTGNLFEVYLKPYFLEAYRPVH 60
+S RLT L+D+Q+DI + + ++ L D +Q + +VYL R +
Sbjct: 1038 ISERLTQIAEYLVDKQKDIDVKFAEKKRKLTAGDDLQHGVQKIVKVYLA-----VKRRIQ 1092
Query: 61 KDDLFIVRGGMRAVEFKIVDTDPAPY 86
D R G + V +I+ + PY
Sbjct: 1093 PGDKMAGRHGNKGVVSRIMPVEDMPY 1118
>sp|Q4FQH3|RPOB_PSYA2 DNA-directed RNA polymerase subunit beta OS=Psychrobacter arcticus
(strain DSM 17307 / 273-4) GN=rpoB PE=3 SV=1
Length = 1372
Score = 32.7 bits (73), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 39/86 (45%), Gaps = 5/86 (5%)
Query: 1 MSFRLTTPCRDLLDRQRDIQIVYGKRIHVLPIDDSVQGLTGNLFEVYLKPYFLEAYRPVH 60
+S RLT L+D+Q+DI + + ++ L D +Q + +VYL R +
Sbjct: 1038 ISERLTQIAEYLVDKQKDIDVKFAEKKRKLTAGDDLQHGVQKIVKVYLA-----VKRRIQ 1092
Query: 61 KDDLFIVRGGMRAVEFKIVDTDPAPY 86
D R G + V +I+ + PY
Sbjct: 1093 PGDKMAGRHGNKGVVSRIMPVEDMPY 1118
>sp|A0JYN2|HEM1_ARTS2 Glutamyl-tRNA reductase OS=Arthrobacter sp. (strain FB24) GN=hemA
PE=3 SV=2
Length = 446
Score = 32.0 bits (71), Expect = 1.1, Method: Composition-based stats.
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 6/41 (14%)
Query: 68 RGGMRAVEFKIVDTDPAPYCIVAADTVIHCEGDPIKREGEE 108
RGG K +D+D P + AAD +I C G + E EE
Sbjct: 228 RGG------KALDSDTLPAAVAAADVMIGCSGSDTRVEAEE 262
>sp|Q9SBJ1|PDK_ARATH [Pyruvate dehydrogenase (acetyl-transferring)] kinase,
mitochondrial OS=Arabidopsis thaliana GN=PDK PE=1 SV=1
Length = 366
Score = 29.3 bits (64), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 10/71 (14%)
Query: 46 VYLKPYFLEAYRPVHKDDLF--IVRGGMRAVEFKIVDTD--PAPYCIVAADTV------I 95
+Y P F Y P H + +V+ +RAV+ + VD+D P I+ AD + +
Sbjct: 217 IYGDPSFTFPYVPTHLHLMMYELVKNSLRAVQERFVDSDRVAPPIRIIVADGIEDVTIKV 276
Query: 96 HCEGDPIKREG 106
EG I R G
Sbjct: 277 SDEGGGIARSG 287
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.145 0.447
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,696,856
Number of Sequences: 539616
Number of extensions: 1860671
Number of successful extensions: 2817
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 2794
Number of HSP's gapped (non-prelim): 25
length of query: 115
length of database: 191,569,459
effective HSP length: 83
effective length of query: 32
effective length of database: 146,781,331
effective search space: 4697002592
effective search space used: 4697002592
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)