Query psy6209
Match_columns 115
No_of_seqs 104 out of 303
Neff 6.4
Searched_HMMs 29240
Date Fri Aug 16 20:31:57 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6209.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6209hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3qwz_A Transitional endoplasmi 100.0 3.4E-34 1.2E-38 215.3 10.3 114 1-114 91-204 (211)
2 3tiw_A Transitional endoplasmi 100.0 1.1E-31 3.9E-36 198.4 9.6 100 1-100 88-187 (187)
3 1cz4_A VCP-like ATPase; double 99.9 3.7E-27 1.3E-31 173.7 9.0 103 1-108 73-183 (185)
4 1wlf_A PEX1, peroxisome biogen 99.9 1.6E-22 5.6E-27 148.1 5.9 99 1-101 78-179 (179)
5 3cf2_A TER ATPase, transitiona 99.9 1.4E-21 4.7E-26 169.2 11.0 114 1-114 88-201 (806)
6 2jv2_A Putative uncharacterize 99.9 2.6E-21 9E-26 126.5 9.0 75 20-100 8-82 (83)
7 1ypw_A Transitional endoplasmi 99.8 6.4E-21 2.2E-25 164.2 10.9 112 1-112 88-199 (806)
8 3hu3_A Transitional endoplasmi 99.7 1.4E-16 4.9E-21 130.9 9.9 106 1-106 88-193 (489)
9 2yuj_A Ubiquitin fusion degrad 98.7 1.7E-08 5.8E-13 74.5 6.6 92 1-97 95-186 (190)
10 1zc1_A Ubiquitin fusion degrad 98.6 7.1E-08 2.4E-12 72.0 7.1 97 1-102 100-200 (208)
11 1cr5_A SEC18P (residues 22 - 2 96.9 0.0055 1.9E-07 44.5 8.7 94 2-98 65-186 (189)
12 1qcs_A N-ethylmaleimide sensit 96.8 0.0075 2.6E-07 44.4 8.9 94 2-97 71-189 (211)
13 2xvs_A Tetratricopeptide repea 72.8 2 6.7E-05 30.7 2.3 26 1-30 114-139 (166)
14 2dgy_A MGC11102 protein; EIF-1 67.2 3.9 0.00013 27.2 2.6 18 1-18 48-65 (111)
15 1yfb_A Transition state regula 62.1 4.7 0.00016 23.7 2.1 28 1-33 30-57 (59)
16 3izc_W 60S ribosomal protein R 53.1 19 0.00067 24.2 4.2 49 31-83 22-70 (121)
17 3sgi_A DNA ligase; HET: DNA AM 49.5 9.2 0.00031 32.4 2.5 25 4-28 376-401 (615)
18 1d7q_A Translation initiation 49.0 8.5 0.00029 26.7 1.9 18 1-18 64-81 (143)
19 2c2i_A RV0130; hotdog, hydrata 47.4 23 0.00078 23.1 3.9 40 56-102 97-140 (151)
20 1ah9_A IF1, initiation factor 46.9 6.8 0.00023 23.5 1.0 17 1-17 39-56 (71)
21 3exz_A MAOC-like dehydratase; 46.3 38 0.0013 22.4 5.0 13 56-68 89-101 (154)
22 1z6b_A Pffabz, fatty acid synt 46.2 36 0.0012 22.4 4.8 37 57-102 105-142 (154)
23 3iz5_W 60S ribosomal protein L 45.2 35 0.0012 23.3 4.5 49 31-83 30-79 (130)
24 2oqk_A Putative translation in 43.8 14 0.00048 24.4 2.3 31 1-31 65-96 (117)
25 1jt8_A EIF-1A, probable transl 43.2 3.3 0.00011 27.1 -0.9 18 1-18 53-70 (102)
26 2fhd_A RAD9 homolog, DNA repai 41.9 16 0.00053 25.7 2.4 23 4-29 61-83 (153)
27 3i4o_A Translation initiation 41.1 10 0.00034 23.7 1.2 18 1-18 47-65 (79)
28 2ln7_A LPXTG-SITE transpeptida 39.9 25 0.00086 23.7 3.2 23 59-81 76-98 (147)
29 3llb_A Uncharacterized protein 38.5 63 0.0022 19.3 5.1 34 46-86 40-73 (83)
30 2l66_A SSO7C4, transcriptional 36.6 10 0.00035 21.3 0.6 27 1-32 20-46 (53)
31 1hr0_W Translation initiation 36.3 12 0.00041 22.4 1.0 17 1-17 40-57 (71)
32 4a18_M RPL22, ribosomal protei 36.2 19 0.00065 24.2 2.0 42 31-74 24-65 (118)
33 1t2w_A Sortase; transpeptidase 35.0 37 0.0013 22.6 3.4 23 59-81 75-97 (145)
34 1dgs_A DNA ligase; AMP complex 34.1 16 0.00055 31.1 1.7 20 4-23 364-383 (667)
35 2owo_A DNA ligase; protein-DNA 33.8 15 0.00051 31.3 1.5 19 5-23 367-385 (671)
36 2w1t_A Spovt, stage V sporulat 32.9 23 0.00079 25.3 2.1 30 1-34 22-51 (178)
37 2e63_A KIAA1787 protein; struc 32.2 15 0.0005 25.9 1.0 32 54-85 41-78 (170)
38 3lae_A UPF0053 protein HI0107; 31.2 85 0.0029 18.6 4.7 33 46-85 40-72 (81)
39 3j20_R 30S ribosomal protein S 28.6 77 0.0026 20.9 4.0 26 4-29 77-102 (113)
40 3fn5_A Sortase A; sortase-fold 28.5 54 0.0019 23.1 3.5 23 59-81 99-121 (187)
41 1mvf_D MAZE protein, PEMI-like 28.5 25 0.00085 21.2 1.5 28 2-34 22-49 (82)
42 2yue_A Protein neuralized; str 28.5 14 0.00049 25.8 0.4 32 54-85 40-77 (168)
43 3dlm_A Histone-lysine N-methyl 28.5 1E+02 0.0035 22.6 5.0 56 45-100 141-203 (213)
44 4glx_A DNA ligase; inhibitor, 27.5 14 0.00048 31.0 0.2 20 4-23 366-385 (586)
45 1qd7_I S17 ribosomal protein; 27.5 78 0.0027 20.0 3.8 13 6-18 49-61 (89)
46 3udc_A Small-conductance mecha 26.0 1.6E+02 0.0055 21.6 5.9 26 44-69 114-139 (285)
47 1wih_A Mitochondrial ribosome 25.9 47 0.0016 20.8 2.5 45 20-69 29-74 (84)
48 1iq6_A (R)-hydratase, (R)-spec 25.6 1.1E+02 0.0039 18.8 4.4 12 57-68 86-97 (134)
49 2k6w_A Putative uncharacterize 25.0 1.1E+02 0.0037 20.0 4.3 15 54-68 88-102 (120)
50 2w1j_A Putative sortase, sorta 24.4 71 0.0024 22.9 3.5 23 59-81 130-152 (212)
51 3r8n_Q 30S ribosomal protein S 24.4 43 0.0015 20.7 2.1 14 5-18 48-61 (80)
52 2xwg_A Sortase; hydrolase, fim 24.2 67 0.0023 23.5 3.4 23 59-81 166-188 (235)
53 1q6w_A Monoamine oxidase regul 24.0 1.3E+02 0.0044 19.6 4.6 12 57-68 105-116 (161)
54 3ded_A Probable hemolysin; str 23.6 1.3E+02 0.0045 19.2 4.5 32 47-85 72-103 (113)
55 2nqw_A CBS domain protein; PFA 23.4 1.3E+02 0.0045 18.2 5.0 34 46-86 51-84 (93)
56 4g1h_A Sortase family protein; 22.9 78 0.0027 22.9 3.5 23 59-81 130-152 (215)
57 2vv5_A MSCS, small-conductance 22.9 1.6E+02 0.0053 21.7 5.3 25 45-69 116-140 (286)
58 2kw8_A LPXTG-SITE transpeptida 22.8 83 0.0029 21.2 3.5 23 59-81 89-111 (158)
59 3o0p_A Sortase family protein; 22.8 79 0.0027 22.9 3.5 23 59-81 134-156 (216)
60 2p4p_A Hypothetical protein HD 22.6 1.3E+02 0.0045 17.9 4.4 33 46-85 42-74 (86)
61 3rbj_A Sortase C1, sortase fam 22.4 77 0.0026 23.2 3.4 23 59-81 148-170 (230)
62 2xzm_Q Ribosomal protein S17 c 22.1 1E+02 0.0035 21.5 3.9 27 4-30 113-139 (157)
63 2io0_B Small ubiquitin-related 22.0 71 0.0024 19.7 2.8 52 62-113 3-66 (91)
64 2w1k_A Putative sortase; pilus 21.8 82 0.0028 23.3 3.5 23 59-81 128-150 (252)
65 4g1j_A Sortase family protein; 21.7 81 0.0028 22.9 3.4 23 59-81 137-159 (222)
66 3j21_U 50S ribosomal protein L 21.3 1.9E+02 0.0064 19.2 5.1 37 56-92 43-80 (121)
67 3k67_A Putative dehydratase AF 21.0 1.2E+02 0.004 20.5 4.0 21 57-84 114-134 (159)
68 2cwz_A Thioesterase family pro 20.9 1.6E+02 0.0054 19.2 4.6 42 56-97 71-118 (141)
69 2oai_A Hemolysin; PFAM03471, x 20.9 1.5E+02 0.0052 18.0 4.4 33 46-85 52-84 (94)
70 3g66_A Sortase C; pilus, trans 20.9 87 0.003 22.6 3.4 23 59-81 129-151 (212)
71 4a17_S RPL26, 60S ribosomal pr 20.9 1.6E+02 0.0055 20.0 4.5 37 56-92 46-83 (135)
72 1ge9_A Ribosome recycling fact 20.4 1.2E+02 0.004 21.6 3.9 44 20-69 61-104 (184)
73 3qoo_A Uncharacterized protein 20.4 1.3E+02 0.0045 20.0 4.1 44 55-98 75-123 (138)
No 1
>3qwz_A Transitional endoplasmic reticulum ATPase; UBX, P97 binding, transport protein; HET: MLY; 2.00A {Homo sapiens} PDB: 2pjh_B
Probab=100.00 E-value=3.4e-34 Score=215.33 Aligned_cols=114 Identities=67% Similarity=1.147 Sum_probs=104.2
Q ss_pred CCcccCCCCCCeEEEEeCCCCCCccEEEEccCCCCccCcccchHHHHhhHhhhhCCCceecCCEEEEccCCceEEEEEEE
Q psy6209 1 MSFRLTTPCRDLLDRQRDIQIVYGKRIHVLPIDDSVQGLTGNLFEVYLKPYFLEAYRPVHKDDLFIVRGGMRAVEFKIVD 80 (115)
Q Consensus 1 ~R~Nagv~iGD~V~V~k~~~v~~A~~V~laP~~d~i~~i~~~~~~~~lk~~l~~~~rPV~~Gd~i~v~~~~~~v~FkVv~ 80 (115)
||+||||++||+|+|+|+.++++|++|+|||+++++.++.+++|..||++||++.+|||++||+|.+..+++.++|+|++
T Consensus 91 ~R~N~gV~iGD~V~V~~~~~v~~A~~V~LaP~~~~i~~i~~~~~~~~lk~~l~~~~rPV~~GD~i~v~~~~~~v~f~Vv~ 170 (211)
T 3qwz_A 91 VRNNLRVRLGDVISIQPCPDVKYGKRIHVLPIDDTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFXVVE 170 (211)
T ss_dssp HHHHTTCCTTCEEEEEECTTCCBCSEEEEEEBGGGCTTCCSCHHHHTTHHHHTTCCEEEETTCEEECCCTTSCCEEEEEE
T ss_pred HHhhcCCCCCCEEEEEECCCCCCceEEEEeccCcchhccCchhHHHHHHHHHhhCCceeecCCEEEEccCCcEEEEEEEe
Confidence 69999999999999999658999999999999888866888888999999998789999999999999889999999999
Q ss_pred ecCCCcEEEcCCceEEEcCccccCccccCCCCCC
Q psy6209 81 TDPAPYCIVAADTVIHCEGDPIKREGEENKPNGV 114 (115)
Q Consensus 81 t~P~~~viVt~~T~I~~~~~pv~re~~~~~~~~~ 114 (115)
|+|+++|+|+++|+|+|+++|++||++|+.+++|
T Consensus 171 t~P~g~viV~~~T~I~~~~~pv~~~~~e~~~~~V 204 (211)
T 3qwz_A 171 TDPSPYCIVAPDTVIHCEGEPIKREDEEESLNEV 204 (211)
T ss_dssp EESSSEEEECTTCEEECCSCCBCCCGGGSCCC--
T ss_pred ecCCCCEEECCCcEEEEcCcccccccccccCCCc
Confidence 9999999999999999999999999876566554
No 2
>3tiw_A Transitional endoplasmic reticulum ATPase; beta-barrel alpha-helix, transport protein ATPase ubiquitin ubiquitin, phosphorylation; 1.80A {Homo sapiens} PDB: 3qq8_A 3qq7_A 3qc8_A
Probab=99.97 E-value=1.1e-31 Score=198.37 Aligned_cols=100 Identities=68% Similarity=1.202 Sum_probs=89.5
Q ss_pred CCcccCCCCCCeEEEEeCCCCCCccEEEEccCCCCccCcccchHHHHhhHhhhhCCCceecCCEEEEccCCceEEEEEEE
Q psy6209 1 MSFRLTTPCRDLLDRQRDIQIVYGKRIHVLPIDDSVQGLTGNLFEVYLKPYFLEAYRPVHKDDLFIVRGGMRAVEFKIVD 80 (115)
Q Consensus 1 ~R~Nagv~iGD~V~V~k~~~v~~A~~V~laP~~d~i~~i~~~~~~~~lk~~l~~~~rPV~~Gd~i~v~~~~~~v~FkVv~ 80 (115)
||+||||++||+|+|+++.++++|++|+|+|+++++.++.+++|..||++||++++|||++||+|.+..+++.++|+|++
T Consensus 88 ~R~N~gV~iGD~V~V~~~~~v~~A~~V~LaP~~~~i~~i~~~~~~~~lk~~l~~~~rpV~~GD~i~v~~~~~~v~f~Vv~ 167 (187)
T 3tiw_A 88 VRNNLRVRLGDVISIQPCPDVKYGKRIHVLPIDDTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVE 167 (187)
T ss_dssp HHHHTTCCTTCEEEEEECTTCEECSEEEEEECCCC-----CCHHHHTHHHHHTTTCCEEETTCEEEEECSSSEEEEEEEE
T ss_pred HHhhcCCCCCCEEEEEECCCCCCceEEEEeccccchhhccchhHHHHHHHHhccCCceeeCCCEEEEccCCCEEEEEEEE
Confidence 59999999999999999658999999999999888866888888999999999778999999999999989999999999
Q ss_pred ecCCCcEEEcCCceEEEcCc
Q psy6209 81 TDPAPYCIVAADTVIHCEGD 100 (115)
Q Consensus 81 t~P~~~viVt~~T~I~~~~~ 100 (115)
|+|+++|+|+++|+|+|+|+
T Consensus 168 t~P~~~v~V~~~T~I~~eg~ 187 (187)
T 3tiw_A 168 TDPSPYCIVAPDTVIHCEGE 187 (187)
T ss_dssp EESSSEEECCTTCEEECCC-
T ss_pred ecCCCCEEECCCcEEEecCC
Confidence 99999999999999999875
No 3
>1cz4_A VCP-like ATPase; double-PSI beta-barrel, beta-CLAM, substrate recognition DOM hydrolase; NMR {Thermoplasma acidophilum} SCOP: b.52.2.3 d.31.1.1 PDB: 1cz5_A
Probab=99.94 E-value=3.7e-27 Score=173.66 Aligned_cols=103 Identities=21% Similarity=0.321 Sum_probs=92.9
Q ss_pred CCcccCCCCCCeEEEEeCCCCCCccEEEEccCC---CCccCcccchHHHHhhHhhhhCCCceecCCEEEEcc---CCc-e
Q psy6209 1 MSFRLTTPCRDLLDRQRDIQIVYGKRIHVLPID---DSVQGLTGNLFEVYLKPYFLEAYRPVHKDDLFIVRG---GMR-A 73 (115)
Q Consensus 1 ~R~Nagv~iGD~V~V~k~~~v~~A~~V~laP~~---d~i~~i~~~~~~~~lk~~l~~~~rPV~~Gd~i~v~~---~~~-~ 73 (115)
||+|+|+++||+|+|+|+ ++++|++|+|+|++ +++. +.+++ ..||++||. +|||++||+|.+.. .|+ .
T Consensus 73 ~R~N~gv~iGD~V~V~~~-~~~~A~~V~l~P~~~~~~~~~-~~~~~-~~~l~~~l~--~rpv~~Gd~v~v~~~~~~g~~~ 147 (185)
T 1cz4_A 73 MRNNCGASIGDKVKVRKV-RTEIAKKVTLAPIIRKDQRLK-FGEGI-EEYVQRALI--RRPMLEQDNISVPGLTLAGQTG 147 (185)
T ss_dssp HHHHHTCCTTCEEEEEEE-CCCBCSEEEEEEECSTTCCSC-CCSSH-HHHHHHHHT--TCEECTTCEECCSSCCCSSCCC
T ss_pred HHhccCCCCCCEEEEEEC-CCCCccEEEEecccccccccc-cccch-HHHHHHHHC--CCcccCCCEEEEeeeccCCCeE
Confidence 599999999999999995 99999999999996 6674 76654 799999999 89999999999986 778 9
Q ss_pred EEEEEEEecCCC-cEEEcCCceEEEcCccccCcccc
Q psy6209 74 VEFKIVDTDPAP-YCIVAADTVIHCEGDPIKREGEE 108 (115)
Q Consensus 74 v~FkVv~t~P~~-~viVt~~T~I~~~~~pv~re~~~ 108 (115)
++|+|++|+|++ +|+|+++|+|+|+++|+++.-+|
T Consensus 148 ~~f~Vv~t~P~~~~v~Vt~~T~I~i~~~p~~~~~~~ 183 (185)
T 1cz4_A 148 LLFKVVKTLPSKVPVEIGEETKIEIREEPASEVLEE 183 (185)
T ss_dssp CEEEEEEESSSSSCEECCTTCEEEECSCCSTTCCCS
T ss_pred EEEEEEEEcCCCceEEEcCCeEEEECCccchHhhhc
Confidence 999999999999 99999999999999999855443
No 4
>1wlf_A PEX1, peroxisome biogenesis factor 1; N-terminal domain, protein transport; 2.05A {Mus musculus} SCOP: b.52.2.3 d.31.1.1
Probab=99.86 E-value=1.6e-22 Score=148.15 Aligned_cols=99 Identities=17% Similarity=0.222 Sum_probs=84.7
Q ss_pred CCcccCCCCCCeEEEEeCCCCCCccEEEEccCCC-CccCcccchHHHHhhHhhhhCCCceecCCEEEEccCC-ceEEEEE
Q psy6209 1 MSFRLTTPCRDLLDRQRDIQIVYGKRIHVLPIDD-SVQGLTGNLFEVYLKPYFLEAYRPVHKDDLFIVRGGM-RAVEFKI 78 (115)
Q Consensus 1 ~R~Nagv~iGD~V~V~k~~~v~~A~~V~laP~~d-~i~~i~~~~~~~~lk~~l~~~~rPV~~Gd~i~v~~~~-~~v~FkV 78 (115)
+|+|||+++||+|+|++..++++|++|+|+|.+. ..+ +.+ ++.+||+++|++-.|||.+||+|.+...+ ..++|+|
T Consensus 78 ~r~n~gv~~Gd~V~V~~~~~~~~A~~V~laP~~~dD~e-i~e-~~a~~le~~Ll~QiR~v~~G~~i~v~~~g~~~i~f~V 155 (179)
T 1wlf_A 78 VGQKLGLSSGDQVFLRPCSHVVSCQQVEVEPLSADDWE-ILE-LHAISLEQHLLDQIRIVFPKAVVPIWVDQQTYIFIQI 155 (179)
T ss_dssp HHHHTTCCTTCEEEEEECSCCEECSEEEEEESSHHHHH-HHH-HSCSSHHHHHHHHCCEECTTCEEEEESSSSCEEEEEE
T ss_pred HHhHCCCCCCCEEEEEECCCCccceEEEEEcCCcCCeE-Eeh-hHHHHHHHHHhcCceeccCCCEEEEEecCCeEEEEEE
Confidence 4899999999999999966999999999999842 143 544 34799999999444999999999998766 8999999
Q ss_pred EEecC-CCcEEEcCCceEEEcCcc
Q psy6209 79 VDTDP-APYCIVAADTVIHCEGDP 101 (115)
Q Consensus 79 v~t~P-~~~viVt~~T~I~~~~~p 101 (115)
++|+| .++|+|+++|+|.+.++|
T Consensus 156 ~~~~P~~~~v~It~~TeI~v~pk~ 179 (179)
T 1wlf_A 156 VTLMPAAPYGRLETNTKLLIQPKT 179 (179)
T ss_dssp EEEESCCSSEECCTTCEEEECC--
T ss_pred EEeeCCCCeEEECCCcEEEEecCC
Confidence 99999 999999999999998775
No 5
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.86 E-value=1.4e-21 Score=169.17 Aligned_cols=114 Identities=68% Similarity=1.158 Sum_probs=104.9
Q ss_pred CCcccCCCCCCeEEEEeCCCCCCccEEEEccCCCCccCcccchHHHHhhHhhhhCCCceecCCEEEEccCCceEEEEEEE
Q psy6209 1 MSFRLTTPCRDLLDRQRDIQIVYGKRIHVLPIDDSVQGLTGNLFEVYLKPYFLEAYRPVHKDDLFIVRGGMRAVEFKIVD 80 (115)
Q Consensus 1 ~R~Nagv~iGD~V~V~k~~~v~~A~~V~laP~~d~i~~i~~~~~~~~lk~~l~~~~rPV~~Gd~i~v~~~~~~v~FkVv~ 80 (115)
+|+|||+++||.|+|+++.++++|++|+|+|+++++..+.++.+..|+++||...+|||.+||+|.+...++.++|+|++
T Consensus 88 ~r~n~~v~~gd~V~v~~~~~~~~a~~v~l~p~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~gd~~~v~~~~~~~~f~V~~ 167 (806)
T 3cf2_A 88 VRNNLRVRLGDVISIQPCPDVKYGKRIHVLPIDDTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVE 167 (806)
T ss_dssp HHHTTTCCTTCEEEEEECCCCCBCSBEEEEEBTTTSTTCCSCHHHHTHHHHHTTTCCEEETTCEEEECCTTSCEEEEEEE
T ss_pred HHHhcCCCCCCEEEEEECCCCCcCCEEEEeccccchhccchhHHHHHHHHHHHhcCCcccCCCEEEEecCCcEEEEEEEE
Confidence 48999999999999999878999999999999988877888888999999998889999999999999999999999999
Q ss_pred ecCCCcEEEcCCceEEEcCccccCccccCCCCCC
Q psy6209 81 TDPAPYCIVAADTVIHCEGDPIKREGEENKPNGV 114 (115)
Q Consensus 81 t~P~~~viVt~~T~I~~~~~pv~re~~~~~~~~~ 114 (115)
|+|.++|+|+++|.|.+.++|+.+++++...++|
T Consensus 168 ~~P~~~~~v~~~T~i~~~~~~~~~~~~~~~~~~v 201 (806)
T 3cf2_A 168 TDPSPYCIVAPDTVIHCEGEPIKREDEEESLNEV 201 (806)
T ss_dssp ESSSSEEECCTTSBCCBCSCCBCCCTTSCCSSSC
T ss_pred EeCCCCeEECCCcEEEEeccccCcccccccCCCC
Confidence 9999999999999999999999988776555544
No 6
>2jv2_A Putative uncharacterized protein PH1500; AAA ATPase NC-domain-like, unknown function; NMR {Pyrococcus horikoshii}
Probab=99.85 E-value=2.6e-21 Score=126.47 Aligned_cols=75 Identities=20% Similarity=0.206 Sum_probs=67.9
Q ss_pred CCCCccEEEEccCCCCccCcccchHHHHhhHhhhhCCCceecCCEEEEccCCceEEEEEEEecCCCcEEEcCCceEEEcC
Q psy6209 20 QIVYGKRIHVLPIDDSVQGLTGNLFEVYLKPYFLEAYRPVHKDDLFIVRGGMRAVEFKIVDTDPAPYCIVAADTVIHCEG 99 (115)
Q Consensus 20 ~v~~A~~V~laP~~d~i~~i~~~~~~~~lk~~l~~~~rPV~~Gd~i~v~~~~~~v~FkVv~t~P~~~viVt~~T~I~~~~ 99 (115)
+--.|++|+|||++ +++ ++++ +.+|||++|. +|||++||+|.+...|++++|+|++|+|+ +|+|+++|+|+|++
T Consensus 8 ~~~~A~kVvLAP~~-~i~-~~~~-~~~~lk~~L~--grPV~~GD~I~i~~~G~~i~F~Vv~t~P~-~V~Vt~~T~I~i~~ 81 (83)
T 2jv2_A 8 EGVIMSELKLKPLP-KVE-LPPD-FVDVIRIKLQ--GKTVRTGDVIGISILGKEVKFKVVQAYPS-PLRVEDRTKITLVT 81 (83)
T ss_dssp CCCCCCEEEEEESS-SCC-CCHH-HHHHHHHHHT--TSEECTTCEEEEEETTEEEEEEEEEEESS-SEECCTTSEEEECC
T ss_pred cceEEEEEEEcCCC-cee-cCcc-HHHHHHHHHC--CCCccCCCEEEEeeCCCEEEEEEEEecCc-cEEECCCcEEEEEe
Confidence 44589999999995 674 8775 4899999999 99999999999998899999999999999 99999999999976
Q ss_pred c
Q psy6209 100 D 100 (115)
Q Consensus 100 ~ 100 (115)
+
T Consensus 82 e 82 (83)
T 2jv2_A 82 H 82 (83)
T ss_dssp C
T ss_pred c
Confidence 5
No 7
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.84 E-value=6.4e-21 Score=164.25 Aligned_cols=112 Identities=68% Similarity=1.171 Sum_probs=101.6
Q ss_pred CCcccCCCCCCeEEEEeCCCCCCccEEEEccCCCCccCcccchHHHHhhHhhhhCCCceecCCEEEEccCCceEEEEEEE
Q psy6209 1 MSFRLTTPCRDLLDRQRDIQIVYGKRIHVLPIDDSVQGLTGNLFEVYLKPYFLEAYRPVHKDDLFIVRGGMRAVEFKIVD 80 (115)
Q Consensus 1 ~R~Nagv~iGD~V~V~k~~~v~~A~~V~laP~~d~i~~i~~~~~~~~lk~~l~~~~rPV~~Gd~i~v~~~~~~v~FkVv~ 80 (115)
+|+|||+++||+|+|+++.++++|++|+|+|+++++..+.+++|+.|+++||.+.+|||.+||++.+..++..++|+|++
T Consensus 88 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~~ 167 (806)
T 1ypw_A 88 VRNNLRVRLGDVISIQPCPDVKYGKRIHVLPIDDTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVE 167 (806)
T ss_dssp HHTTTTCCTTCEEEEEECTTCCBCSEEEEEECTTTSSSCCSCCTTTTTGGGTTTTCCBCCTTCEEEECCSSSCEEEEEEE
T ss_pred HHhhcCCCCCCEEEEEECCCCCcCcEEEEeCCccchhhcccchHHHHHHHHhccCCccccCCCEEEecCCCcceEEEEEe
Confidence 48999999999999999768999999999999988876888778899999998789999999999999888999999999
Q ss_pred ecCCCcEEEcCCceEEEcCccccCccccCCCC
Q psy6209 81 TDPAPYCIVAADTVIHCEGDPIKREGEENKPN 112 (115)
Q Consensus 81 t~P~~~viVt~~T~I~~~~~pv~re~~~~~~~ 112 (115)
++|.++|+|+++|.+.+.++|+.+++.+...+
T Consensus 168 ~~p~~~~~v~~~t~~~~~~~~~~~~~~~~~~~ 199 (806)
T 1ypw_A 168 TDPSPYCIVAPDTVIHCEGEPIKREDEEESLN 199 (806)
T ss_dssp ETTTTCCBCCSSSEEEECSCCCCCCTTSCCSS
T ss_pred ccCCCCceecCCeEEEecCccccchhhhcccC
Confidence 99999999999999999999998876553433
No 8
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.68 E-value=1.4e-16 Score=130.94 Aligned_cols=106 Identities=68% Similarity=1.194 Sum_probs=97.4
Q ss_pred CCcccCCCCCCeEEEEeCCCCCCccEEEEccCCCCccCcccchHHHHhhHhhhhCCCceecCCEEEEccCCceEEEEEEE
Q psy6209 1 MSFRLTTPCRDLLDRQRDIQIVYGKRIHVLPIDDSVQGLTGNLFEVYLKPYFLEAYRPVHKDDLFIVRGGMRAVEFKIVD 80 (115)
Q Consensus 1 ~R~Nagv~iGD~V~V~k~~~v~~A~~V~laP~~d~i~~i~~~~~~~~lk~~l~~~~rPV~~Gd~i~v~~~~~~v~FkVv~ 80 (115)
||+|+|+++||+|+|+++.++++|++|+|+|+++.++.+..+.|+.+.||++....+|+.+||.+.+...++.++|++++
T Consensus 88 ~r~n~~~~~gd~v~v~~~~~~~~a~~v~~~~~~~av~a~~~ga~d~~~Kp~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 167 (489)
T 3hu3_A 88 VRNNLRVRLGDVISIQPCPDVKYGKRIHVLPIDDTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVHGGMRAVEFKVVE 167 (489)
T ss_dssp HHHHTTCCTTCEEEEEECTTCCBCSEEEEEEBGGGSSSCCSCHHHHTHHHHHTTTCEEEETTCEEEEEETTEEEEEEEEE
T ss_pred HHhhcCCCCCCEEEEEECCCCCccCEEEEcCCCcccccccchhHHHHhHHHHhhcCcccccCCEEEecCCCceEEEEEEe
Confidence 58999999999999999779999999999999887776776678889999998778999999999999989999999999
Q ss_pred ecCCCcEEEcCCceEEEcCccccCcc
Q psy6209 81 TDPAPYCIVAADTVIHCEGDPIKREG 106 (115)
Q Consensus 81 t~P~~~viVt~~T~I~~~~~pv~re~ 106 (115)
++|.+.++++++|.+.+.++|+.+++
T Consensus 168 ~~~~~~~~~~~~t~~~~~~~~~~~~~ 193 (489)
T 3hu3_A 168 TDPSPYCIVAPDTVIHCEGEPIKRED 193 (489)
T ss_dssp EESSSEEEECTTCEEECCSSCBCHHH
T ss_pred ecCCCceEEcCCeEEEEccCcccccc
Confidence 99999999999999999999987653
No 9
>2yuj_A Ubiquitin fusion degradation 1-like; ubiquitin-dependent proteolytic, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.75 E-value=1.7e-08 Score=74.50 Aligned_cols=92 Identities=12% Similarity=0.164 Sum_probs=71.0
Q ss_pred CCcccCCCCCCeEEEEeCCCCCCccEEEEccCCCCccCcccchHHHHhhHhhhhCCCceecCCEEEEccCCceEEEEEEE
Q psy6209 1 MSFRLTTPCRDLLDRQRDIQIVYGKRIHVLPIDDSVQGLTGNLFEVYLKPYFLEAYRPVHKDDLFIVRGGMRAVEFKIVD 80 (115)
Q Consensus 1 ~R~Nagv~iGD~V~V~k~~~v~~A~~V~laP~~d~i~~i~~~~~~~~lk~~l~~~~rPV~~Gd~i~v~~~~~~v~FkVv~ 80 (115)
|.+|+++.-||.|.|+-+ ..+.|+.|+|.|-+..--.+. | ...+|...|+ ++--+++||+|.|...+...+|.|++
T Consensus 95 mm~~L~l~~gd~V~v~~~-~LPkgt~vklqP~~~~Fl~i~-n-pKavLE~~Lr-nfstLT~Gd~I~I~~~~~~y~l~V~e 170 (190)
T 2yuj_A 95 MMQNLLLEEGGLVQVESV-NLQVATYSKFQPQSPDFLDIT-N-PKAVLENALR-NFACLTTGDVIAINYNEKIYELRVME 170 (190)
T ss_dssp HHHHHTCCTTEEEEEEEE-CCCCCSEEEEEESSHHHHHSS-C-HHHHHHHHHT-TCCEECTTCEEEEESSSCEEEEEEEE
T ss_pred HHHhcCCCCCCEEEEEEe-ecCCCcEEEEEECCccccccc-c-HHHHHHHHHh-cCcccccCCEEEEEeCCEEEEEEEEE
Confidence 678999999999999985 999999999999642111132 2 4677888887 35569999999999988999999999
Q ss_pred ecCCCcEEEcCCceEEE
Q psy6209 81 TDPAPYCIVAADTVIHC 97 (115)
Q Consensus 81 t~P~~~viVt~~T~I~~ 97 (115)
++|+..+.|- +|.+++
T Consensus 171 ~kP~~aV~Ii-dTDl~v 186 (190)
T 2yuj_A 171 TKPDKAVSII-ECDMNV 186 (190)
T ss_dssp ESSSSSEECS-SCCCEE
T ss_pred EcCCCeEEEE-eCCEEE
Confidence 9997544433 444443
No 10
>1zc1_A Ubiquitin fusion degradation protein 1; UFD1, double-PSI-beta-barrel, protein turnover; NMR {Saccharomyces cerevisiae}
Probab=98.63 E-value=7.1e-08 Score=72.04 Aligned_cols=97 Identities=16% Similarity=0.316 Sum_probs=75.3
Q ss_pred CCcccCCCCCCeEEEEeCCCCCCccEEEEccCCCCccCcccchHHHHhhHhhhhCCCceecCCEEEEccCCceEEEEEEE
Q psy6209 1 MSFRLTTPCRDLLDRQRDIQIVYGKRIHVLPIDDSVQGLTGNLFEVYLKPYFLEAYRPVHKDDLFIVRGGMRAVEFKIVD 80 (115)
Q Consensus 1 ~R~Nagv~iGD~V~V~k~~~v~~A~~V~laP~~d~i~~i~~~~~~~~lk~~l~~~~rPV~~Gd~i~v~~~~~~v~FkVv~ 80 (115)
|.+|+++.-||.|.|+-+ +.+.|+.|+|.|-+..--.+. | ...+|...|+ ++--+++||+|.|...++..+|.|++
T Consensus 100 mm~~L~l~~gd~V~i~~~-~LPkgt~vklqP~~~~Fldi~-n-pKavLE~~LR-nfstLT~Gd~I~i~~~~~~y~l~V~e 175 (208)
T 1zc1_A 100 MMETLGIQPGSLLQISST-DVPLGQFVKLEPQSVDFLDIS-D-PKAVLENVLR-NFSTLTVDDVIEISYNGKTFKIKILE 175 (208)
T ss_dssp HHHHHTCCTTCEEEEEEE-ECCCCSEEEEECCHHHHHTSS-C-HHHHHHHHHH-HCSCEESSSEEEEEETTEEEEEEEEE
T ss_pred HHHhcCCCCCCEEEEEEe-EcCCCCEEEEeECcccccccc-C-HHHHHHHHhh-cCccccCCCEEEEEeCCEEEEEEEEE
Confidence 678999999999999985 999999999999532111132 2 3567788887 36689999999999989999999999
Q ss_pred ecCCC----cEEEcCCceEEEcCccc
Q psy6209 81 TDPAP----YCIVAADTVIHCEGDPI 102 (115)
Q Consensus 81 t~P~~----~viVt~~T~I~~~~~pv 102 (115)
++|+. +|+|.-+=++.+ ..|+
T Consensus 176 ~kP~~~~~aV~IidTDleVDf-~~p~ 200 (208)
T 1zc1_A 176 VKPESSSKSICVIETDLVTDF-APPV 200 (208)
T ss_dssp EECSSTTCEECCSSSCSEEEE-CCCC
T ss_pred EcCCCCCceEEEEeCceEEEe-cCCC
Confidence 99984 666665555555 3444
No 11
>1cr5_A SEC18P (residues 22 - 210); double-PSI beta barrel, vesicle fusion, endocytosis/exocytosis complex; 2.30A {Saccharomyces cerevisiae} SCOP: b.52.2.3 d.31.1.1
Probab=96.94 E-value=0.0055 Score=44.48 Aligned_cols=94 Identities=9% Similarity=-0.034 Sum_probs=65.1
Q ss_pred CcccCCCCCCeEEEEeCCCC-------CCccEEEEc--cCC--CC-ccCcccchHHHHhhHhhhhCCCceecCCEEEEcc
Q psy6209 2 SFRLTTPCRDLLDRQRDIQI-------VYGKRIHVL--PID--DS-VQGLTGNLFEVYLKPYFLEAYRPVHKDDLFIVRG 69 (115)
Q Consensus 2 R~Nagv~iGD~V~V~k~~~v-------~~A~~V~la--P~~--d~-i~~i~~~~~~~~lk~~l~~~~rPV~~Gd~i~v~~ 69 (115)
|+-|++++||.|.|++. +. .++-.+.|. ... .. -..++.+.+...++..|. +.+++.|+.+.+..
T Consensus 65 R~wa~lsl~~~v~V~~y-~p~~~~~~~~~l~si~lEidf~~k~~~~~~~~D~dela~~f~~~F~--~Qift~gQ~l~f~~ 141 (189)
T 1cr5_A 65 RTWGGWSLNQDVQAKAF-DLFKYSGKQSYLGSIDIDISFRARGKAVSTVFDQDELAKQFVRCYE--SQIFSPTQYLIMEF 141 (189)
T ss_dssp HHHHTCCTTCEEEEEEC-CHHHHHTTCCEEEEEEEEEEECC-------CCCHHHHHHHHHHHHT--TCEECTTCEEEEEE
T ss_pred HHhhcccCCCeEEEEEe-CCccCCCCcceEEEEEEEEEehhcCCCCCCccCHHHHHHHHHHHHc--CCCCCCCCEEEEEE
Confidence 78899999999999996 32 234444442 221 10 123665555666777777 99999999999988
Q ss_pred CCceEEEEEEEec----------------CCCcEEEcCCceEEEc
Q psy6209 70 GMRAVEFKIVDTD----------------PAPYCIVAADTVIHCE 98 (115)
Q Consensus 70 ~~~~v~FkVv~t~----------------P~~~viVt~~T~I~~~ 98 (115)
.+..+.+.|.++. +...++++++|.|...
T Consensus 142 ~g~~l~l~V~~i~~~d~~~~~~~~~~~~~~~~~GiL~~~T~i~F~ 186 (189)
T 1cr5_A 142 QGHFFDLKIRNVQAIDLGDIEPTSAVATGIETKGILTKQTQINFF 186 (189)
T ss_dssp TTEEEEEEEEEEEEECTTSSSCSSCCBCSTTCCEECCTTCEEEEE
T ss_pred CCcEEEEEEEEEEEeccccccccCcCCCCccceEEEcCCcEEEEE
Confidence 7777777776642 2347999999998763
No 12
>1qcs_A N-ethylmaleimide sensitive factor (NSF-N); double-PSI beta barrel alpha beta roll, fusion protein; 1.90A {Cricetulus griseus} SCOP: b.52.2.3 d.31.1.1 PDB: 1qdn_A
Probab=96.84 E-value=0.0075 Score=44.44 Aligned_cols=94 Identities=3% Similarity=-0.065 Sum_probs=64.7
Q ss_pred CcccCCCCCCeEEEEeCCCC---CCccEEEEc--cCC--C-CccCcccchHHHHhhHhhhhCCCceecCCEEEEccCCce
Q psy6209 2 SFRLTTPCRDLLDRQRDIQI---VYGKRIHVL--PID--D-SVQGLTGNLFEVYLKPYFLEAYRPVHKDDLFIVRGGMRA 73 (115)
Q Consensus 2 R~Nagv~iGD~V~V~k~~~v---~~A~~V~la--P~~--d-~i~~i~~~~~~~~lk~~l~~~~rPV~~Gd~i~v~~~~~~ 73 (115)
|+-|++++||.|.|++...- .++-.++|- ... . +-..++.+.+...++..|. +++++.|+.+.+...+..
T Consensus 71 R~wa~lsl~~~v~V~~y~~~~~~~~l~si~lEidf~~k~~~~~~~~D~dela~~f~~~F~--~Qift~gQ~l~f~~~g~~ 148 (211)
T 1qcs_A 71 RKWAGLSIGQEIEVALYSFDKAKQCIGTMTIEIDFLQKKNIDSNPYDTDKMAAEFIQQFN--NQAFSVGQQLVFSFNDKL 148 (211)
T ss_dssp HHHHTCCTTCEEEEEEECCCHHHHBEEEEEEEEEESCGGGCCCCEEEHHHHHHHHHHHHT--TCEEETTCEEEEEETTEE
T ss_pred HhhhcccCCCcEEEEEecCCCCCceEEEEEEEEEehhcCCCCCcccCHHHHHHHHHHHHc--CCCCCCCCEEEEEECCcE
Confidence 78899999999999997221 123334442 221 1 1123655445566677777 999999999999877777
Q ss_pred EEEEEEEe-----------------cCCCcEEEcCCceEEE
Q psy6209 74 VEFKIVDT-----------------DPAPYCIVAADTVIHC 97 (115)
Q Consensus 74 v~FkVv~t-----------------~P~~~viVt~~T~I~~ 97 (115)
+.+.|.++ +|...++++++|.|..
T Consensus 149 l~l~V~~v~~~d~~~~~~~~~~~~~~~~~~GiL~~~T~i~F 189 (211)
T 1qcs_A 149 FGLLVKDIEAMDPSILKGEPASGKRQKIEVGLVVGNSQVAF 189 (211)
T ss_dssp EEEEEEEEEECCCCTTC-------CCBCSEEECCTTCEEEE
T ss_pred EEEEEeEEEEecccccccCcccccCCCcceeEEcCCcEEEE
Confidence 77777663 2245799999999876
No 13
>2xvs_A Tetratricopeptide repeat protein 5; antitumor protein, P53 cofactor, stress-response; 1.80A {Homo sapiens}
Probab=72.77 E-value=2 Score=30.69 Aligned_cols=26 Identities=4% Similarity=-0.161 Sum_probs=19.8
Q ss_pred CCcccCCCCCCeEEEEeCCCCCCccEEEEc
Q psy6209 1 MSFRLTTPCRDLLDRQRDIQIVYGKRIHVL 30 (115)
Q Consensus 1 ~R~Nagv~iGD~V~V~k~~~v~~A~~V~la 30 (115)
|++|+|+.|||.|+|-. |.-+.|.+.
T Consensus 114 l~~~~G~~iGDsV~Ipe----P~v~~v~i~ 139 (166)
T 2xvs_A 114 IVQSWGVLIGDSVAIPE----PNLRLHRIQ 139 (166)
T ss_dssp CCSSCCCCTTCEEEEES----CEEEEEEEE
T ss_pred ccCCcceEecCEEEeCC----CcEEEEecc
Confidence 78999999999999975 344445554
No 14
>2dgy_A MGC11102 protein; EIF-1A, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=67.21 E-value=3.9 Score=27.17 Aligned_cols=18 Identities=11% Similarity=-0.134 Sum_probs=16.8
Q ss_pred CCcccCCCCCCeEEEEeC
Q psy6209 1 MSFRLTTPCRDLLDRQRD 18 (115)
Q Consensus 1 ~R~Nagv~iGD~V~V~k~ 18 (115)
||+++.+..||+|.|...
T Consensus 48 ~Rk~IwI~~GD~VlVe~~ 65 (111)
T 2dgy_A 48 YRKNIWIKRGDFLIVDPI 65 (111)
T ss_dssp CCSCCCCCSSCEEEEEEC
T ss_pred hcccEEEcCCCEEEEEec
Confidence 899999999999999984
No 15
>1yfb_A Transition state regulatory protein ABRB; , homodimer, bioinformatics, swapped-hairpin barrel, transcription; NMR {Bacillus subtilis} SCOP: b.129.1.3 PDB: 1ysf_A 2k1n_A* 1z0r_A 2ro4_A 2fy9_A 2ro3_A
Probab=62.12 E-value=4.7 Score=23.67 Aligned_cols=28 Identities=18% Similarity=0.190 Sum_probs=22.2
Q ss_pred CCcccCCCCCCeEEEEeCCCCCCccEEEEccCC
Q psy6209 1 MSFRLTTPCRDLLDRQRDIQIVYGKRIHVLPID 33 (115)
Q Consensus 1 ~R~Nagv~iGD~V~V~k~~~v~~A~~V~laP~~ 33 (115)
+|+.+|+..||.|.+.-- + .+|.|.|.+
T Consensus 30 iR~~Lgi~~Gd~l~i~~~-~----~~IiL~p~~ 57 (59)
T 1yfb_A 30 LRRTLGIAEKDALEIYVD-D----EKIILKKYK 57 (59)
T ss_dssp HHHHTTCCTTCEEEEEEE-T----TEEEEEECC
T ss_pred HHHHcCCCCCCEEEEEEE-C----CEEEEEECC
Confidence 478899999999999862 2 368888864
No 16
>3izc_W 60S ribosomal protein RPL22 (L22E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_W 3u5e_U 3u5i_U 4b6a_U
Probab=53.07 E-value=19 Score=24.25 Aligned_cols=49 Identities=16% Similarity=0.151 Sum_probs=34.7
Q ss_pred cCCCCccCcccchHHHHhhHhhhhCCCceecCCEEEEccCCceEEEEEEEecC
Q psy6209 31 PIDDSVQGLTGNLFEVYLKPYFLEAYRPVHKDDLFIVRGGMRAVEFKIVDTDP 83 (115)
Q Consensus 31 P~~d~i~~i~~~~~~~~lk~~l~~~~rPV~~Gd~i~v~~~~~~v~FkVv~t~P 83 (115)
|.+|.| ++...|+.||+..++-.++.=..|+.+.|...+..| .|++..|
T Consensus 22 PveD~I--~d~a~fekfL~erIKV~gk~gnLg~~V~i~~~~~ki--~V~s~~~ 70 (121)
T 3izc_W 22 PTENGV--FDPASYAKYLIDHIKVEGAVGNLGNAVTVTEDGTVV--TVVSTAK 70 (121)
T ss_dssp SSSCSC--CCSHHHHHHHHHHHHHHSSSSSCCCCEEEEECSSEE--EEEESSS
T ss_pred cccCCe--ecHHHHHHHHHHHheecCcccccCceEEEEEcCCEE--EEEeccc
Confidence 888865 444457899999998667777788988887555444 4566555
No 17
>3sgi_A DNA ligase; HET: DNA AMP; 3.50A {Mycobacterium tuberculosis}
Probab=49.51 E-value=9.2 Score=32.35 Aligned_cols=25 Identities=8% Similarity=-0.138 Sum_probs=18.4
Q ss_pred ccCCCCCCeEEEEeCCCCCC-ccEEE
Q psy6209 4 RLTTPCRDLLDRQRDIQIVY-GKRIH 28 (115)
Q Consensus 4 Nagv~iGD~V~V~k~~~v~~-A~~V~ 28 (115)
..+++|||+|.|+|+-++-+ -..|.
T Consensus 376 ~~di~iGD~V~V~rAGdVIP~V~~vv 401 (615)
T 3sgi_A 376 RKGVLIGDTVVIRKAGDVIPEVLGPV 401 (615)
T ss_dssp TTCCCBTCEEEEECCSSSSCCCCEEC
T ss_pred HcCCCCCCEEEEEEcCCCccceeeec
Confidence 46899999999999866643 34443
No 18
>1d7q_A Translation initiation factor 1A; OB-fold, beta-barrel, RNA-binding protein, gene regulation; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=49.01 E-value=8.5 Score=26.70 Aligned_cols=18 Identities=6% Similarity=-0.018 Sum_probs=16.6
Q ss_pred CCcccCCCCCCeEEEEeC
Q psy6209 1 MSFRLTTPCRDLLDRQRD 18 (115)
Q Consensus 1 ~R~Nagv~iGD~V~V~k~ 18 (115)
||+++.+..||+|.|..-
T Consensus 64 mRk~IwI~~GD~VlVe~~ 81 (143)
T 1d7q_A 64 LRKKVWINTSDIILVGLR 81 (143)
T ss_dssp GGGSCCCCTTCEEEEECS
T ss_pred ceeeEEecCCCEEEEeec
Confidence 899999999999999974
No 19
>2c2i_A RV0130; hotdog, hydratase, lyase, structural proteomics in europe, spine, structural genomics; 1.8A {Mycobacterium tuberculosis} SCOP: d.38.1.4
Probab=47.45 E-value=23 Score=23.09 Aligned_cols=40 Identities=13% Similarity=0.125 Sum_probs=22.2
Q ss_pred CCceecCCEEEEccCCceEEEEEEEecCC--CcEEEcCCceEEE--cCccc
Q psy6209 56 YRPVHKDDLFIVRGGMRAVEFKIVDTDPA--PYCIVAADTVIHC--EGDPI 102 (115)
Q Consensus 56 ~rPV~~Gd~i~v~~~~~~v~FkVv~t~P~--~~viVt~~T~I~~--~~~pv 102 (115)
.+||..||.+.+. ..|++..++ +.++++-.+++.+ +|+++
T Consensus 97 ~~PV~~Gd~l~~~-------~~v~~~~~~~~g~~~v~~~~~v~~~~~g~~v 140 (151)
T 2c2i_A 97 PAPVPVGSRVRAT-------SSLVGVEDLGNGTVQATVSTTVEVEGSAKPA 140 (151)
T ss_dssp CSCCBTTCEEEEE-------EEEEEEEEEETTEEEEEEEEEEEETTCSSCS
T ss_pred CCCcCCCCEEEEE-------EEEEEEEEcCCCcEEEEEEEEEEEcCCCceE
Confidence 3588888888775 345555542 4445554444432 34444
No 20
>1ah9_A IF1, initiation factor 1; ribosome binding, protein-RNA interaction, OB fold; NMR {Escherichia coli} SCOP: b.40.4.5
Probab=46.91 E-value=6.8 Score=23.46 Aligned_cols=17 Identities=12% Similarity=0.026 Sum_probs=14.1
Q ss_pred CCcc-cCCCCCCeEEEEe
Q psy6209 1 MSFR-LTTPCRDLLDRQR 17 (115)
Q Consensus 1 ~R~N-agv~iGD~V~V~k 17 (115)
||+| .....||.|.+..
T Consensus 39 ~Rk~~i~i~vGD~V~ve~ 56 (71)
T 1ah9_A 39 MRKNYIRILTGDKVTVEL 56 (71)
T ss_dssp GGGTTCCCCTTCEECCEE
T ss_pred EeccCccCCCCCEEEEEE
Confidence 6765 8888999999886
No 21
>3exz_A MAOC-like dehydratase; Q2RSA1_rhort, NESG, RRR103A, structur genomics, PSI-2, protein structure initiative; 2.30A {Rhodospirillum rubrum}
Probab=46.32 E-value=38 Score=22.42 Aligned_cols=13 Identities=23% Similarity=0.268 Sum_probs=10.7
Q ss_pred CCceecCCEEEEc
Q psy6209 56 YRPVHKDDLFIVR 68 (115)
Q Consensus 56 ~rPV~~Gd~i~v~ 68 (115)
.+||..||.+.+.
T Consensus 89 ~~PV~~GD~L~~~ 101 (154)
T 3exz_A 89 PNPTRPGDELHVE 101 (154)
T ss_dssp SSCCCTTCEEEEE
T ss_pred cCCCCCCCEEEEE
Confidence 4699999998875
No 22
>1z6b_A Pffabz, fatty acid synthesis protein; malaria, beta-hydroxyacyl-ACP dehydra fatty acid biosynthesis, SAD phasing, lyase; 2.09A {Plasmodium falciparum} SCOP: d.38.1.6 PDB: 3az8_A* 3az9_A* 3aza_A* 3azb_A* 1zhg_A 2oki_A 2okh_A
Probab=46.16 E-value=36 Score=22.43 Aligned_cols=37 Identities=14% Similarity=0.252 Sum_probs=21.4
Q ss_pred CceecCCEEEEccCCceEEEEEEEecCC-CcEEEcCCceEEEcCccc
Q psy6209 57 RPVHKDDLFIVRGGMRAVEFKIVDTDPA-PYCIVAADTVIHCEGDPI 102 (115)
Q Consensus 57 rPV~~Gd~i~v~~~~~~v~FkVv~t~P~-~~viVt~~T~I~~~~~pv 102 (115)
+||..||++.+. ..+.+..+. +.+.+. +++.++|+++
T Consensus 105 ~pV~pGd~l~~~-------~~v~~~~~~~g~~~~~--~~~~~~g~~v 142 (154)
T 1z6b_A 105 KPVLPGDTLTMQ-------ANLISFKSSLGIAKLS--GVGYVNGKVV 142 (154)
T ss_dssp SCCCTTCEEEEE-------EEEEEEETTTTEEEEE--EEEEETTEEE
T ss_pred cccCCCCEEEEE-------EEEEEeeCCceEEEEE--EEEEECCEEE
Confidence 578888876653 445566563 333333 4445666665
No 23
>3iz5_W 60S ribosomal protein L22 (L22E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_W
Probab=45.21 E-value=35 Score=23.28 Aligned_cols=49 Identities=14% Similarity=0.217 Sum_probs=34.5
Q ss_pred cCCCCccCcccchHHHHhhHhhhh-CCCceecCCEEEEccCCceEEEEEEEecC
Q psy6209 31 PIDDSVQGLTGNLFEVYLKPYFLE-AYRPVHKDDLFIVRGGMRAVEFKIVDTDP 83 (115)
Q Consensus 31 P~~d~i~~i~~~~~~~~lk~~l~~-~~rPV~~Gd~i~v~~~~~~v~FkVv~t~P 83 (115)
|.+|.| ++...|+.||+..++- .++.=..|+.+.+......| .|++..|
T Consensus 30 PveD~I--~d~a~fekfL~erIKV~nGk~gnLg~~V~i~~~k~ki--~V~s~~~ 79 (130)
T 3iz5_W 30 PVEDKI--MEIASLEKFLQERIKVAGGKAGNLGDSVTVTRDKTKV--TVTSDGA 79 (130)
T ss_dssp SSSCSC--CCSHHHHHHHHHHHHHHSSCCSSSCCCEEEEECSSCE--EEEESSS
T ss_pred cccCCe--ecHHHHHHHHHhheeecCCcccccCCceEEEEeCCEE--EEEecce
Confidence 888865 5544578999999985 67777789988887554444 4566555
No 24
>2oqk_A Putative translation initiation factor EIF-1A; malaria, eukaryotic initiation facto SGC, structural genomics; 1.80A {Cryptosporidium parvum iowa II}
Probab=43.78 E-value=14 Score=24.42 Aligned_cols=31 Identities=16% Similarity=-0.051 Sum_probs=19.8
Q ss_pred CCcccCCCCCCeEEEEeCC-CCCCccEEEEcc
Q psy6209 1 MSFRLTTPCRDLLDRQRDI-QIVYGKRIHVLP 31 (115)
Q Consensus 1 ~R~Nagv~iGD~V~V~k~~-~v~~A~~V~laP 31 (115)
||+++.+..||.|.|...+ +...|.-+.+.|
T Consensus 65 ~Rk~I~i~~GD~V~ve~~~~~~~kG~I~~~~~ 96 (117)
T 2oqk_A 65 MRKKVWVNPGDIVLVSLRDFQDSKGDIILKYT 96 (117)
T ss_dssp HHHHSCCCTTCEEEEEECTTCTTEEEEEEECC
T ss_pred eecCCcCCCCCEEEEEEEcCCCCeEEEEEEec
Confidence 5667888899999999731 222344444444
No 25
>1jt8_A EIF-1A, probable translation initiation factor 1A; beta barrel, translation factor; NMR {Methanocaldococcus jannaschii} SCOP: b.40.4.5
Probab=43.24 E-value=3.3 Score=27.10 Aligned_cols=18 Identities=11% Similarity=-0.056 Sum_probs=16.1
Q ss_pred CCcccCCCCCCeEEEEeC
Q psy6209 1 MSFRLTTPCRDLLDRQRD 18 (115)
Q Consensus 1 ~R~Nagv~iGD~V~V~k~ 18 (115)
||+++.+..||+|.|...
T Consensus 53 mRk~IwI~~GD~VlVe~~ 70 (102)
T 1jt8_A 53 LKNRIWVREGDVVIVKPW 70 (102)
T ss_dssp HHHHHCCCSCEEEEECCB
T ss_pred ceeeEEecCCCEEEEEec
Confidence 788999999999999874
No 26
>2fhd_A RAD9 homolog, DNA repair protein RHP9/CRB2; tamdem tudor domains, cell cycle; HET: DNA MSE PO4; 2.40A {Schizosaccharomyces pombe}
Probab=41.88 E-value=16 Score=25.67 Aligned_cols=23 Identities=17% Similarity=0.101 Sum_probs=18.6
Q ss_pred ccCCCCCCeEEEEeCCCCCCccEEEE
Q psy6209 4 RLTTPCRDLLDRQRDIQIVYGKRIHV 29 (115)
Q Consensus 4 Nagv~iGD~V~V~k~~~v~~A~~V~l 29 (115)
-+.+++||.|+|- +++.+..+++
T Consensus 61 ~LeLRiGD~VKVd---~vpK~~hiVv 83 (153)
T 2fhd_A 61 RFFLKKGDVVQST---RLGKIKHTVV 83 (153)
T ss_dssp ESCCCTTCEEEET---TSTTCCEEEE
T ss_pred eeeeecCCEEEEC---CCCCccEEEE
Confidence 3678999999997 7788877765
No 27
>3i4o_A Translation initiation factor IF-1; cytoplasm, protein biosynthesis; 1.47A {Mycobacterium tuberculosis} SCOP: b.40.4.5
Probab=41.12 E-value=10 Score=23.65 Aligned_cols=18 Identities=11% Similarity=-0.070 Sum_probs=14.2
Q ss_pred CCc-ccCCCCCCeEEEEeC
Q psy6209 1 MSF-RLTTPCRDLLDRQRD 18 (115)
Q Consensus 1 ~R~-Nagv~iGD~V~V~k~ 18 (115)
||+ ...+..||.|.|..-
T Consensus 47 ~Rk~~I~Il~GD~V~ve~~ 65 (79)
T 3i4o_A 47 MRQHYIRILPEDRVVVELS 65 (79)
T ss_dssp HHHTTCCCCTTCEEEEEEE
T ss_pred eecCCccCCCCCEEEEEEC
Confidence 455 678899999998863
No 28
>2ln7_A LPXTG-SITE transpeptidase family protein; sortase, sortase family D, enzyme, protein binding; NMR {Bacillus anthracis}
Probab=39.91 E-value=25 Score=23.67 Aligned_cols=23 Identities=9% Similarity=0.284 Sum_probs=20.2
Q ss_pred eecCCEEEEccCCceEEEEEEEe
Q psy6209 59 VHKDDLFIVRGGMRAVEFKIVDT 81 (115)
Q Consensus 59 V~~Gd~i~v~~~~~~v~FkVv~t 81 (115)
+.+||.|.+...+....|+|.++
T Consensus 76 l~~GD~i~v~~~~~~~~Y~V~~~ 98 (147)
T 2ln7_A 76 LKEKDTLVLEYDNKTYTYEIQKI 98 (147)
T ss_dssp SSTTCEEEEEETTEEEEEEEEEE
T ss_pred ccCCCEEEEEECCcEEEEEEEeE
Confidence 67899999998888899999884
No 29
>3llb_A Uncharacterized protein; protein PA3983, unknown function, structural genomics, PSI2, MCSG, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: d.145.1.0
Probab=38.51 E-value=63 Score=19.31 Aligned_cols=34 Identities=12% Similarity=0.285 Sum_probs=24.4
Q ss_pred HHhhHhhhhCCCceecCCEEEEccCCceEEEEEEEecCCCc
Q psy6209 46 VYLKPYFLEAYRPVHKDDLFIVRGGMRAVEFKIVDTDPAPY 86 (115)
Q Consensus 46 ~~lk~~l~~~~rPV~~Gd~i~v~~~~~~v~FkVv~t~P~~~ 86 (115)
-|+...|. ..| ..||.+.+.. +.|.|.+++..-+
T Consensus 40 G~i~~~lg--~iP-~~Gd~v~~~~----~~f~V~~~~~~rI 73 (83)
T 3llb_A 40 GLVMSAFG--HLP-KRNEVVELGE----FRFRVLNADSRRV 73 (83)
T ss_dssp HHHHHHHS--SCC-CTTCEEEETT----EEEEEEEECSSCE
T ss_pred HHHHHHhC--cCC-CCCCEEEECC----EEEEEEEeeCCEE
Confidence 45555554 445 7899998865 7999999887544
No 30
>2l66_A SSO7C4, transcriptional regulator, ABRB family; DNA binding protein, transcription regulator; NMR {Sulfolobus solfataricus}
Probab=36.61 E-value=10 Score=21.29 Aligned_cols=27 Identities=15% Similarity=0.019 Sum_probs=20.2
Q ss_pred CCcccCCCCCCeEEEEeCCCCCCccEEEEccC
Q psy6209 1 MSFRLTTPCRDLLDRQRDIQIVYGKRIHVLPI 32 (115)
Q Consensus 1 ~R~Nagv~iGD~V~V~k~~~v~~A~~V~laP~ 32 (115)
+|+.+|+..||.|.+.-- + ..+.|.|.
T Consensus 20 ir~~lgi~~Gd~v~i~~~-~----~~ivl~p~ 46 (53)
T 2l66_A 20 VRQKFQIKEGDLVKVTFD-E----SEGVVKIQ 46 (53)
T ss_dssp HHHHSCCCTTCEEEEEEC-S----SSCCEEEE
T ss_pred HHHHcCcCCCCEEEEEEE-C----CEEEEEEC
Confidence 377899999999999862 2 24777775
No 31
>1hr0_W Translation initiation factor; ribosomal subunit, ribosome, IF1; 3.20A {Escherichia coli} SCOP: b.40.4.5 PDB: 1zo1_W
Probab=36.31 E-value=12 Score=22.38 Aligned_cols=17 Identities=12% Similarity=-0.033 Sum_probs=13.9
Q ss_pred CCc-ccCCCCCCeEEEEe
Q psy6209 1 MSF-RLTTPCRDLLDRQR 17 (115)
Q Consensus 1 ~R~-Nagv~iGD~V~V~k 17 (115)
||+ ++....||.|.+..
T Consensus 40 ~Rk~~i~i~~GD~V~ve~ 57 (71)
T 1hr0_W 40 MRMHYIRILPGDRVVVEI 57 (71)
T ss_dssp HHHTCCCCCTTCEEEEEC
T ss_pred EeccCcCCCCCCEEEEEE
Confidence 464 78888999999985
No 32
>4a18_M RPL22, ribosomal protein L22; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_M 4a1b_M 4a1d_M
Probab=36.21 E-value=19 Score=24.21 Aligned_cols=42 Identities=14% Similarity=0.221 Sum_probs=29.5
Q ss_pred cCCCCccCcccchHHHHhhHhhhhCCCceecCCEEEEccCCceE
Q psy6209 31 PIDDSVQGLTGNLFEVYLKPYFLEAYRPVHKDDLFIVRGGMRAV 74 (115)
Q Consensus 31 P~~d~i~~i~~~~~~~~lk~~l~~~~rPV~~Gd~i~v~~~~~~v 74 (115)
|.+|.| ++...|+.||+..++-.++.=..|+.+.|...+..|
T Consensus 24 PveD~I--~d~a~fekfL~erIKV~gk~gnLg~~V~i~~~~~ki 65 (118)
T 4a18_M 24 PVEDKV--ILIGEFAEFLKSKIKVGGKLGNLGENITISNDDKKI 65 (118)
T ss_dssp HHHTTC--CCHHHHHHHHHHHCCBTTBSSCCTTTEEEEECSSEE
T ss_pred cccCce--ecHHHHHHHHHHHhhccCcccccCCeEEEEEcCCEE
Confidence 877765 554457899999998666666778888776544433
No 33
>1t2w_A Sortase; transpeptidase, beta barrel, hydrolase; 1.80A {Staphylococcus aureus} SCOP: b.100.1.1 PDB: 1t2o_A 1ija_A 2kid_A* 1t2p_A
Probab=34.98 E-value=37 Score=22.59 Aligned_cols=23 Identities=13% Similarity=0.313 Sum_probs=20.1
Q ss_pred eecCCEEEEccCCceEEEEEEEe
Q psy6209 59 VHKDDLFIVRGGMRAVEFKIVDT 81 (115)
Q Consensus 59 V~~Gd~i~v~~~~~~v~FkVv~t 81 (115)
+.+||.|.+...++...|+|.++
T Consensus 75 l~~Gd~i~v~~~~~~~~Y~V~~~ 97 (145)
T 1t2w_A 75 AKKGSMVYFKVGNETRKYKMTSI 97 (145)
T ss_dssp CCTTCEEEEEETTEEEEEEEEEE
T ss_pred CCCCCEEEEEECCEEEEEEEEEE
Confidence 67999999988778889999885
No 34
>1dgs_A DNA ligase; AMP complex, NAD+-dependent; HET: DNA AMP; 2.90A {Thermus filiformis} SCOP: a.60.2.2 b.40.4.6 d.142.2.2 PDB: 1v9p_A*
Probab=34.07 E-value=16 Score=31.11 Aligned_cols=20 Identities=10% Similarity=0.032 Sum_probs=16.2
Q ss_pred ccCCCCCCeEEEEeCCCCCC
Q psy6209 4 RLTTPCRDLLDRQRDIQIVY 23 (115)
Q Consensus 4 Nagv~iGD~V~V~k~~~v~~ 23 (115)
..++++||+|.|+|+.++-+
T Consensus 364 ~~di~iGD~V~V~rAGdvIP 383 (667)
T 1dgs_A 364 ELDIRIGDWVLVHKAGGVIP 383 (667)
T ss_dssp HTTCBSSCEEEEEEETTTEE
T ss_pred HcCCCCCCEEEEEECCCcch
Confidence 36889999999999866643
No 35
>2owo_A DNA ligase; protein-DNA complex, ligase-DNA complex; HET: DNA OMC AMP; 2.30A {Escherichia coli}
Probab=33.85 E-value=15 Score=31.33 Aligned_cols=19 Identities=16% Similarity=0.057 Sum_probs=15.9
Q ss_pred cCCCCCCeEEEEeCCCCCC
Q psy6209 5 LTTPCRDLLDRQRDIQIVY 23 (115)
Q Consensus 5 agv~iGD~V~V~k~~~v~~ 23 (115)
.++++||+|.|+|+-++-+
T Consensus 367 ~di~iGD~V~V~rAGdvIP 385 (671)
T 2owo_A 367 LGLRIGDKVVIRRAGDVIP 385 (671)
T ss_dssp HTCCBTCEEEEEEETTTEE
T ss_pred cCCCCCCEEEEEECCCccc
Confidence 5899999999999867643
No 36
>2w1t_A Spovt, stage V sporulation protein T; transcription, transcription regulation, repressor, activator, DNA-binding; 2.60A {Bacillus subtilis} PDB: 2w1t_B 2ro5_A
Probab=32.87 E-value=23 Score=25.26 Aligned_cols=30 Identities=13% Similarity=0.007 Sum_probs=22.9
Q ss_pred CCcccCCCCCCeEEEEeCCCCCCccEEEEccCCC
Q psy6209 1 MSFRLTTPCRDLLDRQRDIQIVYGKRIHVLPIDD 34 (115)
Q Consensus 1 ~R~Nagv~iGD~V~V~k~~~v~~A~~V~laP~~d 34 (115)
+|+.+|+..||.|.+.-. . . -+|.|.|...
T Consensus 22 iR~~LgI~~GD~l~~~~~-~--d-G~Iil~~~~~ 51 (178)
T 2w1t_A 22 IRRTLRIREGDPLEIFVD-R--D-GDVILKKYSP 51 (178)
T ss_dssp HHHHTTCCTTCEEEEEEC-T--T-SCEEEEECCH
T ss_pred HHHHcCcCCCCEEEEEEe-C--C-CEEEEEECCc
Confidence 488999999999999863 2 1 2588888753
No 37
>2e63_A KIAA1787 protein; structure genomics, neuralized domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=32.25 E-value=15 Score=25.87 Aligned_cols=32 Identities=22% Similarity=0.392 Sum_probs=26.1
Q ss_pred hCCCceecCCEEEEccC------CceEEEEEEEecCCC
Q psy6209 54 EAYRPVHKDDLFIVRGG------MRAVEFKIVDTDPAP 85 (115)
Q Consensus 54 ~~~rPV~~Gd~i~v~~~------~~~v~FkVv~t~P~~ 85 (115)
++.||+..|+.|.+... ...++|=|++.+|+.
T Consensus 41 FS~rPl~~~E~~~v~I~~~~~~wsG~l~~GvT~~dP~~ 78 (170)
T 2e63_A 41 LSREPLRDGRVFTVRIDRKVNSWSGSIEIGVTALDPSV 78 (170)
T ss_dssp EEEEEECTTCEEEEEEEEECCSSCCCCEEEEESSCTTS
T ss_pred EECCCCCCCCEEEEEEEeecCCcceeEEEEEEccChhh
Confidence 55899999999999642 357999999999853
No 38
>3lae_A UPF0053 protein HI0107; APC85784.2, conserved protein, haemophilus influenzae RD KW20, structural genomics, PSI-2; HET: MSE; 1.45A {Haemophilus influenzae} SCOP: d.145.1.4 PDB: 2o1r_A*
Probab=31.24 E-value=85 Score=18.61 Aligned_cols=33 Identities=9% Similarity=0.124 Sum_probs=23.0
Q ss_pred HHhhHhhhhCCCceecCCEEEEccCCceEEEEEEEecCCC
Q psy6209 46 VYLKPYFLEAYRPVHKDDLFIVRGGMRAVEFKIVDTDPAP 85 (115)
Q Consensus 46 ~~lk~~l~~~~rPV~~Gd~i~v~~~~~~v~FkVv~t~P~~ 85 (115)
-|+...|. ..| ..||.+.+.+ +.|.|.+++-.-
T Consensus 40 G~i~~~lg--~iP-~~Gd~v~~~~----~~f~V~~~~~~r 72 (81)
T 3lae_A 40 GLILEHLE--EIP-DEGTICEIDG----LLITILEVGDNM 72 (81)
T ss_dssp HHHHHHCS--SCC-CTTCEEEETT----EEEEEEEEETTE
T ss_pred HHHHHHhC--CCC-CCCCEEEECC----EEEEEEEeeCCE
Confidence 44555543 335 7899998865 789999987643
No 39
>3j20_R 30S ribosomal protein S17P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=28.57 E-value=77 Score=20.93 Aligned_cols=26 Identities=12% Similarity=0.009 Sum_probs=16.7
Q ss_pred ccCCCCCCeEEEEeCCCCCCccEEEE
Q psy6209 4 RLTTPCRDLLDRQRDIQIVYGKRIHV 29 (115)
Q Consensus 4 Nagv~iGD~V~V~k~~~v~~A~~V~l 29 (115)
|-.+++||+|+|....-+..-++=.|
T Consensus 77 ~n~~~vGD~V~I~E~RPlSKtKr~~v 102 (113)
T 3j20_R 77 CINAKVGDKVLIAETRPLSKTKHFVV 102 (113)
T ss_dssp TSCCCTTSEEEEEECSCSSSSEEEEE
T ss_pred CCCCCCCCEEEEEecccCCCcEeEEE
Confidence 33799999999998633333333333
No 40
>3fn5_A Sortase A; sortase-fold, hydrolase; HET: EPE; 1.50A {Streptococcus pyogenes serotype M1} PDB: 3fn6_A 3fn7_A
Probab=28.54 E-value=54 Score=23.15 Aligned_cols=23 Identities=13% Similarity=0.153 Sum_probs=20.2
Q ss_pred eecCCEEEEccCCceEEEEEEEe
Q psy6209 59 VHKDDLFIVRGGMRAVEFKIVDT 81 (115)
Q Consensus 59 V~~Gd~i~v~~~~~~v~FkVv~t 81 (115)
+.+||.|.|...+....|+|.++
T Consensus 99 lk~GD~I~v~~~~~~~~Y~V~~~ 121 (187)
T 3fn5_A 99 AQNGMSIYLTDKEKIYEYIIKDV 121 (187)
T ss_dssp CCTTCEEEEECSSEEEEEEEEEE
T ss_pred CcCCCEEEEEECCeEEEEEEeeE
Confidence 68999999998888899999874
No 41
>1mvf_D MAZE protein, PEMI-like protein 1; plasmid addiction, camel antibody, addiction antidote, immun; 1.65A {Escherichia coli} SCOP: b.129.1.1 PDB: 1ub4_C
Probab=28.52 E-value=25 Score=21.19 Aligned_cols=28 Identities=11% Similarity=0.090 Sum_probs=20.8
Q ss_pred CcccCCCCCCeEEEEeCCCCCCccEEEEccCCC
Q psy6209 2 SFRLTTPCRDLLDRQRDIQIVYGKRIHVLPIDD 34 (115)
Q Consensus 2 R~Nagv~iGD~V~V~k~~~v~~A~~V~laP~~d 34 (115)
|+.+|+..||.|.++.. ..++.|.|...
T Consensus 22 ~~~lgl~~gd~v~i~~~-----~~~iii~p~~~ 49 (82)
T 1mvf_D 22 MQALNLNIDDEVKIDLV-----DGKLIIEPVRK 49 (82)
T ss_dssp HHHTTCCTTCBEEEEEE-----TTEEEEEEC--
T ss_pred HHHcCCCCCCEEEEEEE-----CCEEEEEECCC
Confidence 56789999999999862 24688988743
No 42
>2yue_A Protein neuralized; structure genomics, NEUZ(NHR) domain, structural genomics, NPPSFA; NMR {Drosophila melanogaster}
Probab=28.50 E-value=14 Score=25.84 Aligned_cols=32 Identities=22% Similarity=0.360 Sum_probs=25.6
Q ss_pred hCCCceecCCEEEEccC------CceEEEEEEEecCCC
Q psy6209 54 EAYRPVHKDDLFIVRGG------MRAVEFKIVDTDPAP 85 (115)
Q Consensus 54 ~~~rPV~~Gd~i~v~~~------~~~v~FkVv~t~P~~ 85 (115)
++.||+..|+.|.|... ...+.|=|++++|+.
T Consensus 40 FS~RPl~~~E~~~v~I~~~~~~wsG~l~~GvT~~dP~~ 77 (168)
T 2yue_A 40 FSARPVRINERICVKFAEISNNWNGGIRFGFTSNDPVT 77 (168)
T ss_dssp EESSCCCSSCCEEEEEEECCSSSSSCCEEEEESSCGGG
T ss_pred EECCCCcCCCEEEEEEEeecCCcceeEEEeeeecCHHH
Confidence 55999999999998642 357899999999853
No 43
>3dlm_A Histone-lysine N-methyltransferase setdb1; setdb1_human, structural genomics, structural genomics consortium, SGC, alternative splicing; 1.77A {Homo sapiens}
Probab=28.49 E-value=1e+02 Score=22.62 Aligned_cols=56 Identities=11% Similarity=0.124 Sum_probs=38.0
Q ss_pred HHHhhHhhh-hCCCc---eecCCEEEEccCCceEEEEEEEecCCC--cEEE-cCCceEEEcCc
Q psy6209 45 EVYLKPYFL-EAYRP---VHKDDLFIVRGGMRAVEFKIVDTDPAP--YCIV-AADTVIHCEGD 100 (115)
Q Consensus 45 ~~~lk~~l~-~~~rP---V~~Gd~i~v~~~~~~v~FkVv~t~P~~--~viV-t~~T~I~~~~~ 100 (115)
.+|++.||+ ...|| +..|+.+.+.-.|.-..-+|+++|-+= ...- ...||-.++|+
T Consensus 141 r~FIk~YL~~yP~rpmv~~~~GQ~i~~E~~g~w~~~~V~~vD~SLv~v~f~~dkr~EWIYRGS 203 (213)
T 3dlm_A 141 RDFIEEYVTAYPNRPMVLLKSGQLIKTEWEGTWWKSRVEEVDGSLVRILFLDDKRCEWIYRGS 203 (213)
T ss_dssp HHHHHHHHHHTTCCCCCCCCTTCEEEEEETTEEEEEEEEEEETTEEEEEETTTTEEEEEETTC
T ss_pred HHHHHHHHHhCCCCceEEcCCCCEEEEEecCcEEEEEEEEEcceeEEEEEcCCCeeEEEEcCC
Confidence 578888887 46677 678999999888877777888888742 1222 12455555554
No 44
>4glx_A DNA ligase; inhibitor, ligase-ligase inhibitor-DNA complex; HET: DNA 0XS; 1.90A {Escherichia coli}
Probab=27.52 E-value=14 Score=30.98 Aligned_cols=20 Identities=20% Similarity=0.132 Sum_probs=16.4
Q ss_pred ccCCCCCCeEEEEeCCCCCC
Q psy6209 4 RLTTPCRDLLDRQRDIQIVY 23 (115)
Q Consensus 4 Nagv~iGD~V~V~k~~~v~~ 23 (115)
.+++++||+|.|+++-++-+
T Consensus 366 ~~di~iGD~V~V~rAGdVIP 385 (586)
T 4glx_A 366 RLGLRIGDKVVIRRAGDVIP 385 (586)
T ss_dssp HHTCEETCEEEEEEETTTEE
T ss_pred hcCCCcCCEEEEEECCCcCc
Confidence 36889999999999877644
No 45
>1qd7_I S17 ribosomal protein; 30S ribosomal subunit, low resolution model, ribosome; 5.50A {Thermus thermophilus} SCOP: i.1.1.3 PDB: 1eg0_G 1rip_A
Probab=27.46 E-value=78 Score=19.96 Aligned_cols=13 Identities=8% Similarity=0.148 Sum_probs=11.6
Q ss_pred CCCCCCeEEEEeC
Q psy6209 6 TTPCRDLLDRQRD 18 (115)
Q Consensus 6 gv~iGD~V~V~k~ 18 (115)
.+++||.|.|...
T Consensus 49 ~~k~GD~V~I~E~ 61 (89)
T 1qd7_I 49 EAKVGDIVKIMET 61 (89)
T ss_pred CCCCCCEEEEEEc
Confidence 6899999999986
No 46
>3udc_A Small-conductance mechanosensitive channel, C-TER peptide from small-conductance...; membrane protein; 3.35A {Thermoanaerobacter tengcongensis} PDB: 3t9n_A*
Probab=25.97 E-value=1.6e+02 Score=21.57 Aligned_cols=26 Identities=12% Similarity=0.241 Sum_probs=19.0
Q ss_pred HHHHhhHhhhhCCCceecCCEEEEcc
Q psy6209 44 FEVYLKPYFLEAYRPVHKDDLFIVRG 69 (115)
Q Consensus 44 ~~~~lk~~l~~~~rPV~~Gd~i~v~~ 69 (115)
+.+++.-.+....||++.||.|.+.+
T Consensus 114 l~n~~~Gi~i~~~~pf~vGD~I~i~~ 139 (285)
T 3udc_A 114 VKDMISGFFIIFEDQFSVGDYVTING 139 (285)
T ss_dssp HHHHHHHHHHHHTTSCCTTCEEEETT
T ss_pred HHHHHHHHHHHhhCCccCCCEEEECC
Confidence 34445555556689999999999965
No 47
>1wih_A Mitochondrial ribosome recycling factor; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.67.3.1
Probab=25.85 E-value=47 Score=20.75 Aligned_cols=45 Identities=11% Similarity=-0.031 Sum_probs=30.0
Q ss_pred CCCCccEEEEccCC-CCccCcccchHHHHhhHhhhhCCCceecCCEEEEcc
Q psy6209 20 QIVYGKRIHVLPID-DSVQGLTGNLFEVYLKPYFLEAYRPVHKDDLFIVRG 69 (115)
Q Consensus 20 ~v~~A~~V~laP~~-d~i~~i~~~~~~~~lk~~l~~~~rPV~~Gd~i~v~~ 69 (115)
.+++|+.+.+.|++ ++. + ........++-|- --|...|+.|++..
T Consensus 29 sv~~~r~l~I~p~D~~~~--~-~~IekAI~~S~Lg--lnP~~dG~~Iri~i 74 (84)
T 1wih_A 29 SMKSPQVILVNMASFPEC--T-AAAIKAIRESGMN--LNPEVEGTLIRVPI 74 (84)
T ss_dssp EEEETTEEEEECTTCTTS--H-HHHHHHHHTTTCC--CCCEEETTEEEEEC
T ss_pred EcCCCCEEEEEecccHHH--H-HHHHHHHHHCCCC--CCcccCCCEEEEeC
Confidence 45788999999965 432 3 2233445555443 56999999999864
No 48
>1iq6_A (R)-hydratase, (R)-specific enoyl-COA hydratase; polyhydroxyalkanoate, aeromonas caviae, the hydratase 2 motif, lyase; 1.50A {Aeromonas punctata} SCOP: d.38.1.4
Probab=25.61 E-value=1.1e+02 Score=18.83 Aligned_cols=12 Identities=25% Similarity=0.252 Sum_probs=9.1
Q ss_pred CceecCCEEEEc
Q psy6209 57 RPVHKDDLFIVR 68 (115)
Q Consensus 57 rPV~~Gd~i~v~ 68 (115)
+||..||.+.+.
T Consensus 86 ~Pv~~Gd~l~~~ 97 (134)
T 1iq6_A 86 LPVFVGDEVTAE 97 (134)
T ss_dssp SCCBTTCEEEEE
T ss_pred CCCCCCCEEEEE
Confidence 588888887764
No 49
>2k6w_A Putative uncharacterized protein TTHA1943; PCUA, copper transfer protein, metal transport; NMR {Thermus thermophilus} PDB: 2k6y_A 2k6z_A 2k70_A
Probab=25.05 E-value=1.1e+02 Score=20.04 Aligned_cols=15 Identities=13% Similarity=0.204 Sum_probs=12.5
Q ss_pred hCCCceecCCEEEEc
Q psy6209 54 EAYRPVHKDDLFIVR 68 (115)
Q Consensus 54 ~~~rPV~~Gd~i~v~ 68 (115)
+..+|+..||.|.+.
T Consensus 88 gl~~~l~~G~~v~lt 102 (120)
T 2k6w_A 88 GLKRPLKAGEEVELD 102 (120)
T ss_dssp EESSCBCTTCEEEEE
T ss_pred CCCCCCCCCCEEEEE
Confidence 347899999999986
No 50
>2w1j_A Putative sortase, sortase C-1; pathogenicity, transferase; 1.24A {Streptococcus pneumoniae} PDB: 2wts_A 3re9_A
Probab=24.38 E-value=71 Score=22.93 Aligned_cols=23 Identities=13% Similarity=0.262 Sum_probs=20.1
Q ss_pred eecCCEEEEccCCceEEEEEEEe
Q psy6209 59 VHKDDLFIVRGGMRAVEFKIVDT 81 (115)
Q Consensus 59 V~~Gd~i~v~~~~~~v~FkVv~t 81 (115)
+.+||.|.|...+....|+|.++
T Consensus 130 l~~GD~i~v~~~~~~~~Y~V~~~ 152 (212)
T 2w1j_A 130 LKVGDKFYVHNIKEVMAYQVDQV 152 (212)
T ss_dssp CCTTCEEEEECSSCEEEEEEEEE
T ss_pred CccCCEEEEEECCEEEEEEEEEE
Confidence 67899999988888899999885
No 51
>3r8n_Q 30S ribosomal protein S17; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_Q 3fih_Q* 3iy8_Q 3j18_Q* 2wwl_Q 3oar_Q 3oaq_Q 3ofb_Q 3ofa_Q 3ofp_Q 3ofx_Q 3ofy_Q 3ofo_Q 3r8o_Q 4a2i_Q 4gd1_Q 4gd2_Q 3i1m_Q 1vs7_Q* 3e1a_J ...
Probab=24.36 E-value=43 Score=20.69 Aligned_cols=14 Identities=7% Similarity=0.003 Sum_probs=11.7
Q ss_pred cCCCCCCeEEEEeC
Q psy6209 5 LTTPCRDLLDRQRD 18 (115)
Q Consensus 5 agv~iGD~V~V~k~ 18 (115)
-.+++||.|.|...
T Consensus 48 n~~~~GD~V~I~e~ 61 (80)
T 3r8n_Q 48 NECGIGDVVEIREC 61 (80)
T ss_dssp GCCCTTCEEEEEEE
T ss_pred CCCCCCCEEEEEEe
Confidence 36899999999875
No 52
>2xwg_A Sortase; hydrolase, fimbrial assembly; 2.40A {Actinomyces oris}
Probab=24.15 E-value=67 Score=23.52 Aligned_cols=23 Identities=22% Similarity=0.444 Sum_probs=20.3
Q ss_pred eecCCEEEEccCCceEEEEEEEe
Q psy6209 59 VHKDDLFIVRGGMRAVEFKIVDT 81 (115)
Q Consensus 59 V~~Gd~i~v~~~~~~v~FkVv~t 81 (115)
+.+||.|.|...+....|+|.++
T Consensus 166 lk~GD~I~v~~~~~~~~Y~V~~~ 188 (235)
T 2xwg_A 166 LKKGDVFYVSSLGQTLKYEVNDI 188 (235)
T ss_dssp CCTTCEEEEEETTEEEEEEEEEE
T ss_pred CccCCEEEEEECCEEEEEEEEEE
Confidence 68899999988888899999885
No 53
>1q6w_A Monoamine oxidase regulatory protein, putative; structural genomics, nysgxrc T805, hot DOG fold; 2.81A {Archaeoglobus fulgidus} SCOP: d.38.1.4
Probab=23.98 E-value=1.3e+02 Score=19.60 Aligned_cols=12 Identities=33% Similarity=0.476 Sum_probs=10.1
Q ss_pred CceecCCEEEEc
Q psy6209 57 RPVHKDDLFIVR 68 (115)
Q Consensus 57 rPV~~Gd~i~v~ 68 (115)
+||..||.+.+.
T Consensus 105 ~PV~~Gd~l~~~ 116 (161)
T 1q6w_A 105 RPVFIGDTIAAS 116 (161)
T ss_dssp SCCBTTCEEEEE
T ss_pred cCCCCCCEEEEE
Confidence 689999998875
No 54
>3ded_A Probable hemolysin; structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG, membrane; HET: MSE; 2.14A {Chromobacterium violaceum} SCOP: d.145.1.4
Probab=23.56 E-value=1.3e+02 Score=19.18 Aligned_cols=32 Identities=25% Similarity=0.269 Sum_probs=22.4
Q ss_pred HhhHhhhhCCCceecCCEEEEccCCceEEEEEEEecCCC
Q psy6209 47 YLKPYFLEAYRPVHKDDLFIVRGGMRAVEFKIVDTDPAP 85 (115)
Q Consensus 47 ~lk~~l~~~~rPV~~Gd~i~v~~~~~~v~FkVv~t~P~~ 85 (115)
|+...| ++.-..||.|.+.. +.|.|.+++-.-
T Consensus 72 lil~~l---g~iP~~Gd~v~~~g----~~f~V~~~d~~R 103 (113)
T 3ded_A 72 VMLYQL---GRVPSVTDRFEWNG----FSFEVVDMDRTR 103 (113)
T ss_dssp HHHHHH---CSSCCTTCEEEETT----EEEEEEEEETTE
T ss_pred HHHHHh---CCCCCCCCEEEECC----EEEEEEEEeCCe
Confidence 444444 44446899998865 789999987643
No 55
>2nqw_A CBS domain protein; PFAM03471, hemolysins, CBS domains, transporter associated D CORC_HLYC, structural genomics, PSI-2; 1.30A {Porphyromonas gingivalis} SCOP: d.145.1.4
Probab=23.40 E-value=1.3e+02 Score=18.19 Aligned_cols=34 Identities=12% Similarity=0.074 Sum_probs=23.4
Q ss_pred HHhhHhhhhCCCceecCCEEEEccCCceEEEEEEEecCCCc
Q psy6209 46 VYLKPYFLEAYRPVHKDDLFIVRGGMRAVEFKIVDTDPAPY 86 (115)
Q Consensus 46 ~~lk~~l~~~~rPV~~Gd~i~v~~~~~~v~FkVv~t~P~~~ 86 (115)
-|+...| +|.-..||.|.+.+ +.|.|.+++..-+
T Consensus 51 G~i~~~l---g~iP~~Gd~v~~~~----~~f~V~~~d~~rI 84 (93)
T 2nqw_A 51 GLFLEIK---QELPHVGDTAVYEP----FRFQVTQMDKRRI 84 (93)
T ss_dssp HHHHHHH---CSCCCTTCEEEETT----EEEEEEEECSSSE
T ss_pred HHHHHHh---CcCCCCCCEEEECC----EEEEEEEeeCCEE
Confidence 3455544 44335799988864 8999999887544
No 56
>4g1h_A Sortase family protein; cysteine protease, extracellular, transferase; 1.80A {Streptococcus agalactiae serogroup V}
Probab=22.90 E-value=78 Score=22.86 Aligned_cols=23 Identities=26% Similarity=0.472 Sum_probs=19.6
Q ss_pred eecCCEEEEccCCceEEEEEEEe
Q psy6209 59 VHKDDLFIVRGGMRAVEFKIVDT 81 (115)
Q Consensus 59 V~~Gd~i~v~~~~~~v~FkVv~t 81 (115)
+.+||.|.|...+....|+|.++
T Consensus 130 lk~GD~I~v~~~~~~~~Y~V~~~ 152 (215)
T 4g1h_A 130 VKKGQIFYVTNIKETLAYKVVSI 152 (215)
T ss_dssp CCTTCEEEEECSSCEEEEEEEEE
T ss_pred CCCCCEEEEEECCEEEEEEEeeE
Confidence 57899999988777889999884
No 57
>2vv5_A MSCS, small-conductance mechanosensitive channel; ION transport, transmembrane, inner membrane, membrane struc membrane protein, membrane; 3.45A {Escherichia coli} SCOP: b.38.1.3 d.58.43.1 f.34.1.1 PDB: 2oau_A
Probab=22.88 E-value=1.6e+02 Score=21.73 Aligned_cols=25 Identities=16% Similarity=0.286 Sum_probs=18.7
Q ss_pred HHHhhHhhhhCCCceecCCEEEEcc
Q psy6209 45 EVYLKPYFLEAYRPVHKDDLFIVRG 69 (115)
Q Consensus 45 ~~~lk~~l~~~~rPV~~Gd~i~v~~ 69 (115)
.+++.-.+....||+..||.|.+.+
T Consensus 116 ~n~~sGi~i~~~~pf~vGD~I~i~g 140 (286)
T 2vv5_A 116 SNLAAGVLLVMFRPFRAGEYVDLGG 140 (286)
T ss_dssp HHHHHHHHHHTTCSSCTTCEEESSS
T ss_pred HHHHhhhHHHhcCCccCCCEEEECC
Confidence 3445555556789999999999975
No 58
>2kw8_A LPXTG-SITE transpeptidase family protein; sortase, SRTA, protein binding; NMR {Bacillus anthracis}
Probab=22.85 E-value=83 Score=21.18 Aligned_cols=23 Identities=13% Similarity=0.260 Sum_probs=19.6
Q ss_pred eecCCEEEEccCCceEEEEEEEe
Q psy6209 59 VHKDDLFIVRGGMRAVEFKIVDT 81 (115)
Q Consensus 59 V~~Gd~i~v~~~~~~v~FkVv~t 81 (115)
+.+||.|.+...++...|+|.++
T Consensus 89 l~~Gd~i~v~~~~~~~~Y~V~~~ 111 (158)
T 2kw8_A 89 LKKGDKIYLYDNENEYEYAVTGV 111 (158)
T ss_dssp CCTTCEEEEECSSEEEEEEEEEE
T ss_pred CCcCCEEEEEECCcEEEEEEEEE
Confidence 56799999988888888999885
No 59
>3o0p_A Sortase family protein; PILI assembly, PILI subunits, transferase ,hydrolas transferase, hydrolase; 1.30A {Streptococcus agalactiae}
Probab=22.76 E-value=79 Score=22.89 Aligned_cols=23 Identities=13% Similarity=0.362 Sum_probs=19.7
Q ss_pred eecCCEEEEccCCceEEEEEEEe
Q psy6209 59 VHKDDLFIVRGGMRAVEFKIVDT 81 (115)
Q Consensus 59 V~~Gd~i~v~~~~~~v~FkVv~t 81 (115)
+.+||.|.|...+....|+|.++
T Consensus 134 Lk~GD~I~v~~~~~~~~Y~V~~~ 156 (216)
T 3o0p_A 134 LKKGDKFYIQNIKETIAYQVDQI 156 (216)
T ss_dssp CCTTCEEEEECSSCEEEEEEEEE
T ss_pred CCcCCEEEEEECCEEEEEEEeeE
Confidence 57899999988878889999884
No 60
>2p4p_A Hypothetical protein HD1797; CORC_HLYC, PFAM: PF03471, structural GE PSI-2, protein structure initiative, midwest center for STR genomics; HET: MLY MSE; 1.80A {Haemophilus ducreyi} SCOP: d.145.1.4
Probab=22.61 E-value=1.3e+02 Score=17.90 Aligned_cols=33 Identities=15% Similarity=0.222 Sum_probs=22.7
Q ss_pred HHhhHhhhhCCCceecCCEEEEccCCceEEEEEEEecCCC
Q psy6209 46 VYLKPYFLEAYRPVHKDDLFIVRGGMRAVEFKIVDTDPAP 85 (115)
Q Consensus 46 ~~lk~~l~~~~rPV~~Gd~i~v~~~~~~v~FkVv~t~P~~ 85 (115)
-|+...| ++.-..||.+.+.+ +.|.|.+++..-
T Consensus 42 G~i~~~l---g~iP~~Gd~v~~~~----~~f~V~~~~~~r 74 (86)
T 2p4p_A 42 GFMMYML---RXIPXXTDFVLYDX----YXFEIIDTENFR 74 (86)
T ss_dssp HHHHHHH---CSCCCTTCEEEETT----EEEEEEEEETTE
T ss_pred HHHHHHh---CCCCCCCcEEEEee----EEEEEEEccCCE
Confidence 3455544 44336899988754 789999988743
No 61
>3rbj_A Sortase C1, sortase family protein; sortase fold, beta-barrel, LID-mutant, PILI BIOG hydrolase; 2.30A {Streptococcus agalactiae serogroup V} PDB: 3tb7_A 3rbi_A 3rbk_A 3tbe_A
Probab=22.35 E-value=77 Score=23.15 Aligned_cols=23 Identities=13% Similarity=0.193 Sum_probs=20.3
Q ss_pred eecCCEEEEccCCceEEEEEEEe
Q psy6209 59 VHKDDLFIVRGGMRAVEFKIVDT 81 (115)
Q Consensus 59 V~~Gd~i~v~~~~~~v~FkVv~t 81 (115)
+.+||.|.|...+....|+|.++
T Consensus 148 lk~GD~I~v~~~~~~~~Y~V~~~ 170 (230)
T 3rbj_A 148 VTVGDRFYIEHIGGKIAYQVDQI 170 (230)
T ss_dssp CCTTCEEEEEETTEEEEEEEEEE
T ss_pred CccCCEEEEEECCEEEEEEEEEE
Confidence 68899999988888899999885
No 62
>2xzm_Q Ribosomal protein S17 containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_Q
Probab=22.12 E-value=1e+02 Score=21.51 Aligned_cols=27 Identities=19% Similarity=0.107 Sum_probs=18.2
Q ss_pred ccCCCCCCeEEEEeCCCCCCccEEEEc
Q psy6209 4 RLTTPCRDLLDRQRDIQIVYGKRIHVL 30 (115)
Q Consensus 4 Nagv~iGD~V~V~k~~~v~~A~~V~la 30 (115)
|-.+.+||+|.|.....+..-++=.|.
T Consensus 113 ~n~~kvGD~V~I~EcRPLSKtKrw~Vv 139 (157)
T 2xzm_Q 113 CFSVKEGDILVAGQCRPISKTVRFNAL 139 (157)
T ss_dssp TSCCCTTCEEEEEECCCCSSSCCEEEE
T ss_pred CCCCCCCCEEEEEEcCCCCCcEEEEEE
Confidence 446999999999986444444444444
No 63
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=22.00 E-value=71 Score=19.72 Aligned_cols=52 Identities=17% Similarity=0.245 Sum_probs=31.3
Q ss_pred CCEEEEcc---CCceEEEEEEEecCC---------CcEEEcCCceEEEcCccccCccccCCCCC
Q psy6209 62 DDLFIVRG---GMRAVEFKIVDTDPA---------PYCIVAADTVIHCEGDPIKREGEENKPNG 113 (115)
Q Consensus 62 Gd~i~v~~---~~~~v~FkVv~t~P~---------~~viVt~~T~I~~~~~pv~re~~~~~~~~ 113 (115)
++.|.+.. .|..+.|+|-.++|- ...+--..-.+.+.|+.+..++..+++++
T Consensus 3 ~~~i~ikVk~~~g~~v~~~vk~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~~~~Tp~dl~m 66 (91)
T 2io0_B 3 NDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEM 66 (91)
T ss_dssp -CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHTTCCSTTEEEEETTEECCTTCCTTTTTC
T ss_pred CCeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCC
Confidence 44455532 367899999888871 11111234466779999987766655553
No 64
>2w1k_A Putative sortase; pilus, pneumococcus, pathogenicity, transferase; HET: MES; 2.14A {Streptococcus pneumoniae}
Probab=21.78 E-value=82 Score=23.29 Aligned_cols=23 Identities=26% Similarity=0.504 Sum_probs=20.3
Q ss_pred eecCCEEEEccCCceEEEEEEEe
Q psy6209 59 VHKDDLFIVRGGMRAVEFKIVDT 81 (115)
Q Consensus 59 V~~Gd~i~v~~~~~~v~FkVv~t 81 (115)
+.+||.|.+...+....|+|.++
T Consensus 128 lk~GD~I~v~~~~~~~~Y~V~~~ 150 (252)
T 2w1k_A 128 LKVGDALYYDNGQEIVEYQMMDT 150 (252)
T ss_dssp CCTTCEEEEECSSEEEEEEEEEE
T ss_pred CCCCCEEEEEECCEEEEEEEEEE
Confidence 78899999988888899999885
No 65
>4g1j_A Sortase family protein; cysteine protease, extracellular, transferase; 1.75A {Streptococcus agalactiae serogroup V} PDB: 3tb7_A 3rbi_A 3rbk_A 3tbe_A 3rbj_A
Probab=21.71 E-value=81 Score=22.92 Aligned_cols=23 Identities=13% Similarity=0.193 Sum_probs=19.6
Q ss_pred eecCCEEEEccCCceEEEEEEEe
Q psy6209 59 VHKDDLFIVRGGMRAVEFKIVDT 81 (115)
Q Consensus 59 V~~Gd~i~v~~~~~~v~FkVv~t 81 (115)
+.+||.|.|...+....|+|.++
T Consensus 137 Lk~GD~I~v~~~~~~~~Y~V~~~ 159 (222)
T 4g1j_A 137 VTVGDRFYIEHIGGKIAYQVDQI 159 (222)
T ss_dssp CCTTCEEEEEETTEEEEEEEEEE
T ss_pred CccCCEEEEEECCEEEEEEEeeE
Confidence 57899999988878889999874
No 66
>3j21_U 50S ribosomal protein L24P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=21.31 E-value=1.9e+02 Score=19.18 Aligned_cols=37 Identities=27% Similarity=0.319 Sum_probs=24.6
Q ss_pred CCceecCCEEEEccC-CceEEEEEEEecCCCcEEEcCC
Q psy6209 56 YRPVHKDDLFIVRGG-MRAVEFKIVDTDPAPYCIVAAD 92 (115)
Q Consensus 56 ~rPV~~Gd~i~v~~~-~~~v~FkVv~t~P~~~viVt~~ 92 (115)
..+|.+||.+.|-.+ ...-+=+|.++.|+...++-+.
T Consensus 43 ~~~IkkGD~V~Vi~GkdKGk~GkV~~V~~k~~~V~VEg 80 (121)
T 3j21_U 43 NLPVRVGDKVRIMRGDYKGHEGKVVEVDLKRYRIYVEG 80 (121)
T ss_dssp EEECCSSSEEEECSSSCSSEEEEEEEEETTTTEEEETT
T ss_pred ccccccCCEEEEeecCCCCcEeEEEEEEecCCEEEEeC
Confidence 358999999999644 2223467889998655444333
No 67
>3k67_A Putative dehydratase AF1124; hypothetical protein AF1124, structural genomics, PSI, protein structure initiative; 1.25A {Archaeoglobus fulgidus} PDB: 2b3m_A
Probab=20.98 E-value=1.2e+02 Score=20.50 Aligned_cols=21 Identities=19% Similarity=0.232 Sum_probs=13.8
Q ss_pred CceecCCEEEEccCCceEEEEEEEecCC
Q psy6209 57 RPVHKDDLFIVRGGMRAVEFKIVDTDPA 84 (115)
Q Consensus 57 rPV~~Gd~i~v~~~~~~v~FkVv~t~P~ 84 (115)
+||..||++.+. ..|.+.++.
T Consensus 114 ~PV~~GDtl~~~-------~~V~~~~~~ 134 (159)
T 3k67_A 114 SPVRIGDVVRVE-------GVVSGVEKN 134 (159)
T ss_dssp SCCCTTCEEEEE-------EEEEEEETT
T ss_pred CCcCCCCEEEEE-------EEEEEEECC
Confidence 588888888764 345555553
No 68
>2cwz_A Thioesterase family protein; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.85A {Thermus thermophilus} SCOP: d.38.1.7
Probab=20.95 E-value=1.6e+02 Score=19.19 Aligned_cols=42 Identities=7% Similarity=-0.147 Sum_probs=28.1
Q ss_pred CCceecCCEEEEc-----cCCceEEEEEEEecCC-CcEEEcCCceEEE
Q psy6209 56 YRPVHKDDLFIVR-----GGMRAVEFKIVDTDPA-PYCIVAADTVIHC 97 (115)
Q Consensus 56 ~rPV~~Gd~i~v~-----~~~~~v~FkVv~t~P~-~~viVt~~T~I~~ 97 (115)
-+|+..||.+.+. ..++.+.|.+.-.+.. ..+..+.-|.+.+
T Consensus 71 l~pv~~G~~V~a~a~~~~~~~~~~~~~v~i~d~~g~lv~~g~~t~~iv 118 (141)
T 2cwz_A 71 LASALPGMRVRVVARHEKTEGNRVYARVEAYNELGDLIGVGRTEQVIL 118 (141)
T ss_dssp CSCCCTTCEEEEEEEEEEEETTEEEEEEEEEETTCCEEEEEEEEEEEE
T ss_pred cccCCCCCEEEEEEEEEEECCCEEEEEEEEEECCCCEEEEEEEEEEEe
Confidence 4689999988874 2356778888777776 4444555555544
No 69
>2oai_A Hemolysin; PFAM03471, xylella fastidiosa temecula1, structur genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; HET: MLY; 1.80A {Xylella fastidiosa} SCOP: d.145.1.4 PDB: 2r8d_A*
Probab=20.93 E-value=1.5e+02 Score=18.00 Aligned_cols=33 Identities=33% Similarity=0.367 Sum_probs=22.5
Q ss_pred HHhhHhhhhCCCceecCCEEEEccCCceEEEEEEEecCCC
Q psy6209 46 VYLKPYFLEAYRPVHKDDLFIVRGGMRAVEFKIVDTDPAP 85 (115)
Q Consensus 46 ~~lk~~l~~~~rPV~~Gd~i~v~~~~~~v~FkVv~t~P~~ 85 (115)
-|+...|. ..| ..||.|.+.+ +.|.|.+++..-
T Consensus 52 G~i~~~lg--~iP-~~Gd~v~~~~----~~f~V~~~d~~r 84 (94)
T 2oai_A 52 GMCISYFG--RIP-HVGEYFDWAG----WRIEIVDLDGAR 84 (94)
T ss_dssp HHHHHHHS--SCC-CTTCEEEETT----EEEEEEEEETTE
T ss_pred HHHHHHhC--CCC-CCCCEEEECC----EEEEEEEEcCCE
Confidence 34555443 335 5799988854 789999988743
No 70
>3g66_A Sortase C; pilus, transferase; HET: MES; 1.70A {Streptococcus pneumoniae} PDB: 3g69_A*
Probab=20.92 E-value=87 Score=22.57 Aligned_cols=23 Identities=13% Similarity=0.313 Sum_probs=19.6
Q ss_pred eecCCEEEEccCCceEEEEEEEe
Q psy6209 59 VHKDDLFIVRGGMRAVEFKIVDT 81 (115)
Q Consensus 59 V~~Gd~i~v~~~~~~v~FkVv~t 81 (115)
+.+||.|.|...+....|+|.++
T Consensus 129 lk~GD~I~v~~~~~~~~Y~V~~~ 151 (212)
T 3g66_A 129 MKKGDIFYLHVLDQVLAYQVDQI 151 (212)
T ss_dssp CCTTCEEEEEETTEEEEEEEEEE
T ss_pred CCcCCEEEEEECCeEEEEEEeeE
Confidence 57899999988877889999874
No 71
>4a17_S RPL26, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_S 4a1c_S 4a1e_S
Probab=20.89 E-value=1.6e+02 Score=19.99 Aligned_cols=37 Identities=22% Similarity=0.323 Sum_probs=24.6
Q ss_pred CCceecCCEEEEccC-CceEEEEEEEecCCCcEEEcCC
Q psy6209 56 YRPVHKDDLFIVRGG-MRAVEFKIVDTDPAPYCIVAAD 92 (115)
Q Consensus 56 ~rPV~~Gd~i~v~~~-~~~v~FkVv~t~P~~~viVt~~ 92 (115)
..||.+||.+.|-.+ ...-+=+|+++.|....++-+.
T Consensus 46 s~~IkkgD~V~Vi~GkdKGk~GkV~~V~~kk~~V~VEg 83 (135)
T 4a17_S 46 SMPVRKDDEVLIVRGKFKGNKGKVTQVYRKKWAIHVEK 83 (135)
T ss_dssp EEECCTTCEEEECSSTTTTCEEEEEEEETTTTEEEETT
T ss_pred cccccCCCEEEEeecCCCCceeeEEEEEcCCCEEEEeC
Confidence 458999999999644 1222467889999755444333
No 72
>1ge9_A Ribosome recycling factor; three-helix bundle; NMR {Aquifex aeolicus} SCOP: d.67.3.1
Probab=20.40 E-value=1.2e+02 Score=21.58 Aligned_cols=44 Identities=9% Similarity=0.076 Sum_probs=30.4
Q ss_pred CCCCccEEEEccCCCCccCcccchHHHHhhHhhhhCCCceecCCEEEEcc
Q psy6209 20 QIVYGKRIHVLPIDDSVQGLTGNLFEVYLKPYFLEAYRPVHKDDLFIVRG 69 (115)
Q Consensus 20 ~v~~A~~V~laP~~d~i~~i~~~~~~~~lk~~l~~~~rPV~~Gd~i~v~~ 69 (115)
.+++|+.+.+.|++.+. + ......+.. -|- .-|..-|+.|++..
T Consensus 61 sv~~~r~l~I~p~D~~~--i-~~IekAI~~-dLg--lnP~~dG~~Iri~i 104 (184)
T 1ge9_A 61 SVPEHNQIVIQVWDQNA--V-PAIEKAIRE-ELN--LNPTVQGNVIRVTL 104 (184)
T ss_dssp ECSSSSEEEEECSSSSH--H-HHHHHHHHH-HHC--SCCEEETTEEEEEC
T ss_pred ecCCCCEEEEEecCHHH--H-HHHHHHHHh-CCC--CCcccCCCEEEEeC
Confidence 46889999999996432 3 224344445 444 67999999999864
No 73
>3qoo_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, hot-DOG superfamily; 1.25A {Thermanaerovibrio acidaminovorans}
Probab=20.36 E-value=1.3e+02 Score=20.03 Aligned_cols=44 Identities=11% Similarity=0.037 Sum_probs=32.5
Q ss_pred CCCceecCCEEEEcc-----CCceEEEEEEEecCCCcEEEcCCceEEEc
Q psy6209 55 AYRPVHKDDLFIVRG-----GMRAVEFKIVDTDPAPYCIVAADTVIHCE 98 (115)
Q Consensus 55 ~~rPV~~Gd~i~v~~-----~~~~v~FkVv~t~P~~~viVt~~T~I~~~ 98 (115)
.-+|...|+.+.+.. .++.+.|.|.-.+..+.+.-+.-|.+.++
T Consensus 75 Hlapt~~G~~V~~~a~v~~v~gr~v~f~v~a~d~~~~I~~G~h~r~iV~ 123 (138)
T 3qoo_A 75 NLAPAVLGDDVTFTVTVDRVEGNRVVLSMKADDPHGPVATGLQERVVVS 123 (138)
T ss_dssp ECSCCBTTCEEEEEEEEEEEETTEEEEEEEEEETTEEEEEEEEEEEEEE
T ss_pred EcCCCCCCCEEEEEEEEEEEcCCEEEEEEEEEECCeEEEEEEEEEEEEc
Confidence 347899999888842 46889999999988877666666655553
Done!