RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy6209
         (115 letters)



>gnl|CDD|215011 smart01072, CDC48_2, Cell division protein 48 (CDC48) domain 2.
           This domain has a double psi-beta barrel fold and
           includes VCP-like ATPase and N-ethylmaleimide sensitive
           fusion protein N-terminal domains. Both the VAT and NSF
           N-terminal functional domains consist of two structural
           domains of which this is at the C-terminus. The VAT-N
           domain found in AAA ATPases is a substrate 185-residue
           recognition domain.
          Length = 64

 Score = 55.7 bits (135), Expect = 6e-12
 Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 2/61 (3%)

Query: 44  FEVYLKPYFLEAYRPVHKDDLFIVRGGMRAVEFKIVDTDPAPYCIVAADTVIHCEGDPIK 103
           F  Y+K   L   RPV K D  +V    +A+ F +V T+P+   IV  DT I     P++
Sbjct: 6   FAEYVKRKLLG--RPVTKGDTIVVPFLGKALPFVVVSTEPSGPVIVTDDTEIEILEKPVE 63

Query: 104 R 104
            
Sbjct: 64  E 64


>gnl|CDD|202475 pfam02933, CDC48_2, Cell division protein 48 (CDC48), domain 2.
           This domain has a double psi-beta barrel fold and
           includes VCP-like ATPase and N-ethylmaleimide sensitive
           fusion protein N-terminal domains. Both the VAT and NSF
           N-terminal functional domains consist of two structural
           domains of which this is at the C-terminus. The VAT-N
           domain found in AAA ATPases pfam00004 is a substrate
           185-residue recognition domain.
          Length = 61

 Score = 45.6 bits (109), Expect = 6e-08
 Identities = 15/58 (25%), Positives = 22/58 (37%), Gaps = 2/58 (3%)

Query: 44  FEVYLKPYFLEAYRPVHKDDLFIVRGGMRAVEFKIVDTDPAPYCIVAADTVIHCEGDP 101
              Y K  F    +PV K    +     + +   +V T+P+   IV  DT I     P
Sbjct: 6   ELAYFKRQFEG--QPVSKGQTIVFDFLGKLLPLVVVSTEPSGPVIVTEDTEIEIGEKP 61


>gnl|CDD|215491 PLN02906, PLN02906, xanthine dehydrogenase.
          Length = 1319

 Score = 27.7 bits (62), Expect = 1.4
 Identities = 23/74 (31%), Positives = 32/74 (43%), Gaps = 17/74 (22%)

Query: 44  FEVYLKPYFLEAYRPVHKDDLFIVRGGMRAVEFKIVDTDP------------APYCIVAA 91
           FE Y+K  F +A+R    DD+ IV  GMR V+ +  D +             AP  + A 
Sbjct: 410 FE-YVKE-FKQAHR--RDDDIAIVNAGMR-VKLEEKDGEWIVSDASIAYGGVAPLSVSAR 464

Query: 92  DTVIHCEGDPIKRE 105
            T     G P  +E
Sbjct: 465 KTEEFLIGKPWNKE 478


>gnl|CDD|180403 PRK06107, PRK06107, aspartate aminotransferase; Provisional.
          Length = 402

 Score = 27.4 bits (61), Expect = 1.7
 Identities = 8/20 (40%), Positives = 12/20 (60%)

Query: 83  PAPYCIVAADTVIHCEGDPI 102
           PAPY +   D V+  +G P+
Sbjct: 123 PAPYWVSYPDMVLANDGTPV 142


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.324    0.145    0.447 

Gapped
Lambda     K      H
   0.267   0.0780    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 6,103,608
Number of extensions: 545894
Number of successful extensions: 378
Number of sequences better than 10.0: 1
Number of HSP's gapped: 378
Number of HSP's successfully gapped: 15
Length of query: 115
Length of database: 10,937,602
Length adjustment: 79
Effective length of query: 36
Effective length of database: 7,433,636
Effective search space: 267610896
Effective search space used: 267610896
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 53 (24.1 bits)