RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy6209
         (115 letters)



>d1e32a3 d.31.1.1 (A:107-200) Membrane fusion atpase p97 domain 2,
           P97-Nc {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 94

 Score =  151 bits (383), Expect = 6e-50
 Identities = 73/92 (79%), Positives = 84/92 (91%)

Query: 21  IVYGKRIHVLPIDDSVQGLTGNLFEVYLKPYFLEAYRPVHKDDLFIVRGGMRAVEFKIVD 80
           + YGKRIHVLPIDD+V+G+TGNLFEVYLKPYFLEAYRP+ K D+F+VRGGMRAVEFK+V+
Sbjct: 2   VKYGKRIHVLPIDDTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVE 61

Query: 81  TDPAPYCIVAADTVIHCEGDPIKREGEENKPN 112
           TDP+PYCIVA DTVIHCEG+PIKRE EE   N
Sbjct: 62  TDPSPYCIVAPDTVIHCEGEPIKREDEEESLN 93


>d1cz5a2 d.31.1.1 (A:92-185) C-terminal domain of VAT-N, VAT-Nc
           {Archaeon Thermoplasma acidophilum [TaxId: 2303]}
          Length = 94

 Score = 75.6 bits (186), Expect = 6e-20
 Identities = 24/90 (26%), Positives = 38/90 (42%), Gaps = 8/90 (8%)

Query: 25  KRIHVLPIDDSVQGLT-GNLFEVYLKPYFLEAYRPVHKDDLFIVRG----GMRAVEFKIV 79
           K++ + PI    Q L  G   E Y++   +   RP+ + D   V G    G   + FK+V
Sbjct: 5   KKVTLAPIIRKDQRLKFGEGIEEYVQRALIR--RPMLEQDNISVPGLTLAGQTGLLFKVV 62

Query: 80  DTDPAPYC-IVAADTVIHCEGDPIKREGEE 108
            T P+     +  +T I    +P     EE
Sbjct: 63  KTLPSKVPVEIGEETKIEIREEPASEVLEE 92


>d1w5fa1 c.32.1.1 (A:22-215) Cell-division protein FtsZ {Thermotoga
           maritima [TaxId: 2336]}
          Length = 194

 Score = 27.6 bits (61), Expect = 0.31
 Identities = 12/46 (26%), Positives = 19/46 (41%)

Query: 66  IVRGGMRAVEFKIVDTDPAPYCIVAADTVIHCEGDPIKREGEENKP 111
           ++  G+  VEF  V+TD        AD  I    +  +  G   +P
Sbjct: 19  MIEIGIHGVEFVAVNTDLQVLEASNADVKIQIGENITRGLGAGGRP 64


>d1biaa3 d.104.1.2 (A:64-270) Biotin repressor/biotin holoenzyme
          synthetase, catalytic (central) domain {Escherichia
          coli [TaxId: 562]}
          Length = 207

 Score = 24.2 bits (51), Expect = 4.4
 Identities = 8/25 (32%), Positives = 15/25 (60%)

Query: 11 DLLDRQRDIQIVYGKRIHVLPIDDS 35
           LL+ ++ +  + G  + VLP+ DS
Sbjct: 2  QLLNAKQILGQLDGGSVAVLPVIDS 26


>d2vapa1 c.32.1.1 (A:23-231) Cell-division protein FtsZ {Archaeon
           Methanococcus jannaschii [TaxId: 2190]}
          Length = 209

 Score = 24.1 bits (52), Expect = 4.4
 Identities = 8/46 (17%), Positives = 14/46 (30%)

Query: 66  IVRGGMRAVEFKIVDTDPAPYCIVAADTVIHCEGDPIKREGEENKP 111
           +   G+   +   ++TD        AD  I       +  G    P
Sbjct: 34  LKMEGIEGAKTVAINTDAQQLIRTKADKKILIGKKLTRGLGAGGNP 79


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.324    0.145    0.447 

Gapped
Lambda     K      H
   0.267   0.0583    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 461,165
Number of extensions: 20867
Number of successful extensions: 33
Number of sequences better than 10.0: 1
Number of HSP's gapped: 32
Number of HSP's successfully gapped: 8
Length of query: 115
Length of database: 2,407,596
Length adjustment: 73
Effective length of query: 42
Effective length of database: 1,405,306
Effective search space: 59022852
Effective search space used: 59022852
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 47 (22.2 bits)