Query psy621
Match_columns 289
No_of_seqs 360 out of 3003
Neff 8.6
Searched_HMMs 46136
Date Fri Aug 16 20:32:30 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy621.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/621hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5078 Ubiquitin-protein liga 99.9 4.6E-27 1E-31 186.6 11.3 126 6-131 3-146 (153)
2 KOG0417|consensus 99.9 9.3E-27 2E-31 180.3 9.4 123 9-132 2-142 (148)
3 KOG0417|consensus 99.9 3.4E-26 7.3E-31 177.2 9.4 80 170-286 3-82 (148)
4 COG5078 Ubiquitin-protein liga 99.9 1.1E-24 2.3E-29 173.1 11.1 82 169-286 6-87 (153)
5 KOG0419|consensus 99.9 9.9E-25 2.1E-29 163.8 8.5 98 5-103 1-100 (152)
6 KOG0426|consensus 99.9 6.6E-24 1.4E-28 159.2 10.5 126 5-130 1-157 (165)
7 KOG0419|consensus 99.9 1.9E-23 4.1E-28 156.9 9.6 84 167-287 3-86 (152)
8 KOG1934|consensus 99.9 5.1E-24 1.1E-28 210.8 8.0 170 56-228 524-699 (868)
9 PTZ00390 ubiquitin-conjugating 99.9 7.8E-23 1.7E-27 164.6 11.5 123 8-131 2-142 (152)
10 PTZ00390 ubiquitin-conjugating 99.9 6E-23 1.3E-27 165.3 10.7 81 169-286 3-83 (152)
11 PLN00172 ubiquitin conjugating 99.9 1E-22 2.2E-27 163.3 11.3 122 9-131 2-141 (147)
12 PLN00172 ubiquitin conjugating 99.9 1.9E-22 4.1E-27 161.8 10.6 80 170-286 3-82 (147)
13 KOG0425|consensus 99.9 3.2E-22 6.8E-27 155.0 10.0 125 6-130 3-158 (171)
14 KOG0421|consensus 99.9 2.5E-21 5.4E-26 147.5 9.0 129 4-133 25-170 (175)
15 KOG0425|consensus 99.9 3E-21 6.4E-26 149.6 9.4 59 229-287 30-88 (171)
16 KOG0418|consensus 99.9 1.9E-21 4.1E-26 155.3 8.4 83 169-288 4-89 (200)
17 KOG0426|consensus 99.8 7.7E-21 1.7E-25 142.7 8.7 85 167-287 3-87 (165)
18 PF00179 UQ_con: Ubiquitin-con 99.8 7.4E-21 1.6E-25 152.0 8.6 78 172-286 1-79 (140)
19 KOG0421|consensus 99.8 7.1E-20 1.5E-24 139.6 9.6 85 166-287 27-111 (175)
20 PF02460 Patched: Patched fami 99.8 1.1E-20 2.4E-25 190.1 4.9 187 41-228 474-667 (798)
21 cd00195 UBCc Ubiquitin-conjuga 99.8 1.6E-19 3.6E-24 144.3 10.4 79 171-286 2-80 (141)
22 KOG0418|consensus 99.8 1.5E-19 3.2E-24 144.5 8.4 125 5-131 1-147 (200)
23 PF00179 UQ_con: Ubiquitin-con 99.8 1.8E-19 3.9E-24 144.0 8.8 92 12-103 1-95 (140)
24 KOG0424|consensus 99.8 4.6E-19 1E-23 135.4 9.2 88 168-287 4-91 (158)
25 smart00212 UBCc Ubiquitin-conj 99.8 6.1E-19 1.3E-23 141.7 9.2 80 171-286 1-80 (145)
26 cd00195 UBCc Ubiquitin-conjuga 99.8 1.4E-18 3.1E-23 138.9 9.8 92 11-103 2-96 (141)
27 KOG0427|consensus 99.8 3.9E-18 8.3E-23 128.1 9.8 97 5-103 12-111 (161)
28 KOG0424|consensus 99.8 5.7E-18 1.2E-22 129.5 10.8 99 5-103 1-107 (158)
29 KOG0894|consensus 99.8 2.2E-18 4.8E-23 140.4 8.1 96 5-103 2-102 (244)
30 TIGR00917 2A060601 Niemann-Pic 99.7 1.4E-18 3E-23 179.4 7.9 169 57-227 853-1069(1204)
31 KOG0422|consensus 99.7 1.2E-17 2.5E-22 127.2 7.1 57 229-286 27-83 (153)
32 smart00212 UBCc Ubiquitin-conj 99.7 4.2E-17 9E-22 131.0 9.0 93 11-103 1-96 (145)
33 KOG0416|consensus 99.7 1.7E-17 3.8E-22 130.4 6.2 58 230-287 25-82 (189)
34 KOG0422|consensus 99.7 8.7E-17 1.9E-21 122.4 7.0 125 8-133 2-145 (153)
35 KOG0894|consensus 99.7 1.6E-16 3.5E-21 129.6 9.0 74 166-276 3-76 (244)
36 KOG0423|consensus 99.6 8.3E-17 1.8E-21 126.6 3.9 82 168-286 10-91 (223)
37 KOG0416|consensus 99.6 1.3E-15 2.8E-20 119.9 6.8 125 8-136 3-147 (189)
38 KOG0428|consensus 99.5 9.7E-15 2.1E-19 121.3 7.1 96 4-103 7-107 (314)
39 KOG0420|consensus 99.5 7.8E-15 1.7E-19 115.8 6.2 126 5-133 25-171 (184)
40 KOG0420|consensus 99.5 1.4E-14 3.1E-19 114.4 6.6 51 236-287 61-111 (184)
41 KOG0423|consensus 99.5 1.1E-14 2.3E-19 114.7 4.6 99 4-103 6-106 (223)
42 KOG0427|consensus 99.5 6.8E-14 1.5E-18 105.3 8.6 83 167-287 14-97 (161)
43 TIGR00918 2A060602 The Eukaryo 99.5 8.5E-15 1.8E-19 149.3 1.8 182 45-228 729-987 (1145)
44 KOG0428|consensus 99.4 7.5E-13 1.6E-17 110.2 7.8 48 229-276 34-81 (314)
45 KOG0896|consensus 99.0 1.2E-09 2.6E-14 83.3 5.9 55 233-287 37-91 (138)
46 KOG0429|consensus 98.9 7E-09 1.5E-13 85.5 9.6 59 229-288 43-103 (258)
47 KOG0895|consensus 98.9 2.3E-09 5E-14 106.1 4.9 89 6-95 280-373 (1101)
48 KOG1933|consensus 98.8 2.9E-09 6.3E-14 108.2 4.2 170 58-227 816-1040(1201)
49 KOG0895|consensus 98.7 7E-08 1.5E-12 95.9 8.3 84 166-286 280-366 (1101)
50 KOG0896|consensus 98.2 2.3E-06 5E-11 65.5 5.6 97 8-104 5-109 (138)
51 KOG0429|consensus 97.5 0.00038 8.2E-09 57.9 7.4 120 11-132 22-165 (258)
52 KOG1935|consensus 94.2 0.014 3E-07 57.9 0.1 159 68-228 709-940 (1143)
53 PF14461 Prok-E2_B: Prokaryoti 93.4 0.12 2.6E-06 40.6 4.1 37 250-286 34-73 (133)
54 PF05773 RWD: RWD domain; Int 92.7 0.24 5.3E-06 37.0 4.9 47 231-277 26-74 (113)
55 PF05743 UEV: UEV domain; Int 92.6 0.23 5E-06 38.4 4.7 53 233-289 31-90 (121)
56 smart00591 RWD domain in RING 89.6 1.4 3E-05 32.6 6.3 27 250-276 39-65 (107)
57 PF08694 UFC1: Ubiquitin-fold 74.3 6.4 0.00014 31.0 4.4 80 8-94 24-116 (161)
58 PF14461 Prok-E2_B: Prokaryoti 72.0 14 0.0003 28.8 6.0 82 54-135 34-127 (133)
59 KOG0897|consensus 59.9 7.3 0.00016 29.4 2.1 24 254-277 13-36 (122)
60 PF14462 Prok-E2_E: Prokaryoti 58.9 17 0.00037 28.0 4.0 34 243-276 33-66 (122)
61 smart00340 HALZ homeobox assoc 55.9 10 0.00023 23.2 1.9 15 9-23 20-34 (44)
62 KOG2391|consensus 55.8 8.6 0.00019 34.8 2.2 52 233-288 51-109 (365)
63 PF08694 UFC1: Ubiquitin-fold 48.9 14 0.00031 29.1 2.1 21 254-274 77-97 (161)
64 cd00421 intradiol_dioxygenase 41.3 38 0.00082 26.8 3.7 26 250-275 64-90 (146)
65 PF05743 UEV: UEV domain; Int 40.1 26 0.00056 26.9 2.4 59 36-94 26-93 (121)
66 KOG4018|consensus 39.1 27 0.00059 29.5 2.5 20 253-272 50-69 (215)
67 KOG3357|consensus 39.0 64 0.0014 25.0 4.3 79 9-94 28-119 (167)
68 cd03457 intradiol_dioxygenase_ 37.5 46 0.001 27.7 3.7 26 250-275 85-110 (188)
69 PF06113 BRE: Brain and reprod 35.3 1.1E+02 0.0023 28.0 5.8 43 233-281 52-95 (333)
70 PF05773 RWD: RWD domain; Int 34.7 1.4E+02 0.003 21.7 5.7 65 11-77 4-72 (113)
71 KOG4164|consensus 33.8 14 0.00031 34.1 0.1 51 169-219 381-432 (497)
72 cd03459 3,4-PCD Protocatechuat 32.2 65 0.0014 26.0 3.7 25 251-275 72-101 (158)
73 KOG4445|consensus 28.4 68 0.0015 28.7 3.4 25 252-276 45-69 (368)
74 PF12065 DUF3545: Protein of u 25.2 48 0.001 22.0 1.4 12 10-21 36-47 (59)
75 PF14457 Prok-E2_A: Prokaryoti 25.1 63 0.0014 26.2 2.4 30 256-285 57-89 (162)
76 TIGR02423 protocat_alph protoc 22.2 1.2E+02 0.0025 25.5 3.6 25 250-274 95-124 (193)
77 KOG0309|consensus 22.1 2E+02 0.0043 29.4 5.5 40 236-276 450-491 (1081)
78 TIGR00257 IMPACT_YIGZ uncharac 21.7 1.9E+02 0.0042 24.4 4.8 41 151-191 16-56 (204)
79 PF01205 UPF0029: Uncharacteri 21.1 2.3E+02 0.005 21.3 4.7 38 155-192 4-41 (110)
80 PF03176 MMPL: MMPL family; I 20.8 1.1E+02 0.0023 27.6 3.4 74 155-228 88-165 (333)
81 cd03463 3,4-PCD_alpha Protocat 20.3 1.4E+02 0.0029 24.9 3.6 24 251-274 92-120 (185)
No 1
>COG5078 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=4.6e-27 Score=186.58 Aligned_cols=126 Identities=31% Similarity=0.546 Sum_probs=108.1
Q ss_pred ChHHHHHHHHHHHHhhhCCCCCeEEEecCCCCceEEEEEEeCCCCCCccCcEEEEEE--cCCCCCCCcccceeccccccc
Q psy621 6 TSSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAII--EGELPHWDVNVQNQIENLTKT 83 (289)
Q Consensus 6 ~~~~~~Rl~kE~~~l~~~~~~g~~~~~~~~~n~~~w~~~i~gp~~t~y~g~~~~v~v--~~~yp~~~P~v~~~~~~~~~~ 83 (289)
+..|.+||+||+++|++++++|+++.+.+++|+++|++.|.||+||+|+||.|++.+ +++||++||+++|.++++|||
T Consensus 3 s~~a~~RL~kE~~~l~~~~~~~~~a~p~~d~~l~~w~~~i~GP~dtpYegg~f~~~l~fP~~YP~~PPkv~F~t~i~HPN 82 (153)
T COG5078 3 SPSALKRLLKELKKLQKDPPPGISAGPVDDDNLFHWEATITGPPDTPYEGGIFKLTLEFPEDYPFKPPKVRFTTKIFHPN 82 (153)
T ss_pred chhHHHHHHHHHHHHhcCCCCceEEEECCCCcceeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCeeeeccCCcCCC
Confidence 445999999999999999999999998777799999999999999999999987665 899999999999999999999
Q ss_pred eeccceeeCccccCccchHH---------HHHhhh-c-ccccccCC-----CchhhHHHHhHHh
Q psy621 84 FEASSFISAPLYTESWLRSF---------VSYVRR-N-QDFLNVTI-----DTREGFLKTLNDL 131 (289)
Q Consensus 84 ~e~~~~~~~~~~~~~Wl~~y---------~~~l~~-~-~~~~n~~~-----~~~~~F~~~l~~~ 131 (289)
+..+|.+|++++.+.|.|.| +++|.. + ++++|.++ .++++|.+.++++
T Consensus 83 V~~~G~vCLdIL~~~WsP~~~l~sILlsl~slL~~PN~~~Pln~daa~~~~~d~~~y~~~vr~~ 146 (153)
T COG5078 83 VDPSGNVCLDILKDRWSPVYTLETILLSLQSLLLSPNPDSPLNTEAATLYREDKEEYEKKVREW 146 (153)
T ss_pred cCCCCCChhHHHhCCCCccccHHHHHHHHHHHHcCCCCCCCCChHHHHHHHhCHHHHHHHHHHH
Confidence 99999999999999999986 344432 2 34555443 5777788777774
No 2
>KOG0417|consensus
Probab=99.94 E-value=9.3e-27 Score=180.28 Aligned_cols=123 Identities=24% Similarity=0.412 Sum_probs=104.8
Q ss_pred HHHHHHHHHHHhhhCCCCCeEEEecCCCCceEEEEEEeCCCCCCccCcEEEEEE--cCCCCCCCcccceeccccccceec
Q psy621 9 ALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAII--EGELPHWDVNVQNQIENLTKTFEA 86 (289)
Q Consensus 9 ~~~Rl~kE~~~l~~~~~~g~~~~~~~~~n~~~w~~~i~gp~~t~y~g~~~~v~v--~~~yp~~~P~v~~~~~~~~~~~e~ 86 (289)
+.+||.||+++|++++++||.+.+ +++|+++|+++|.||.++|||||.|.+.| +.+||++||+|+|.++++|||+.+
T Consensus 2 a~~RI~kE~~~l~~dp~~~~~~~~-~~dnl~~w~a~I~GP~~SpYEgG~F~l~I~~p~~YP~~PPkV~F~TkIyHPNI~~ 80 (148)
T KOG0417|consen 2 ASKRIIKELQDLLRDPPPGCSAGP-VGDNLFHWQATILGPPGSPYEGGVFFLEIHFPEDYPFKPPKVRFLTKIYHPNIDS 80 (148)
T ss_pred cHHHHHHHHHHHhcCCCCCCccCC-CCCceeeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCceEeecccccCCcCc
Confidence 456999999999999999999995 78899999999999999999999997765 899999999999999999999999
Q ss_pred cceeeCccccCccchHH---------HHHhhh-c-ccccc-----cCCCchhhHHHHhHHhh
Q psy621 87 SSFISAPLYTESWLRSF---------VSYVRR-N-QDFLN-----VTIDTREGFLKTLNDLW 132 (289)
Q Consensus 87 ~~~~~~~~~~~~Wl~~y---------~~~l~~-~-~~~~n-----~~~~~~~~F~~~l~~~~ 132 (289)
.|.+|++++.+.|.++. ++.|.. + ++++. +...|+..|.+.+++|-
T Consensus 81 ~G~IclDILk~~WsPAl~i~~VllsI~sLL~~PnpddPL~~~ia~~~k~d~~~~~~~ARewt 142 (148)
T KOG0417|consen 81 NGRICLDILKDQWSPALTISKVLLSICSLLSDPNPDDPLVPDIAELYKTDRAKYERTAREWT 142 (148)
T ss_pred cccchHHhhhccCChhhHHHHHHHHHHHHhcCCCCCccccHHHHHHHHhhHHHHHHHHHHHH
Confidence 99999999999998885 334432 1 23332 33368888999888843
No 3
>KOG0417|consensus
Probab=99.93 E-value=3.4e-26 Score=177.19 Aligned_cols=80 Identities=41% Similarity=0.879 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHHHhCCCCeEeeccccccccchhhhcchhhhhhhhhceeeeEEeeeccccCCCCcceEEEEEeCCCCCCC
Q psy621 170 EKEMVKELRRIAHESSLNVSVFHPYFVFFDQFELVRPTTIQSMLGGSVTMMFIRFRVKLVNDDNLFEWEVAIFGPPDTLY 249 (289)
Q Consensus 170 ~~~~~~~~r~ia~~~~~~~~~~~~~~~~~DQ~~~i~~~tiq~~~~a~~~m~~v~~~~i~~~~~~~~~w~~~i~gp~~t~y 249 (289)
.+|+.+|++++..+...++.+- ++++|+++|+++|.||.+|||
T Consensus 3 ~~RI~kE~~~l~~dp~~~~~~~-------------------------------------~~~dnl~~w~a~I~GP~~SpY 45 (148)
T KOG0417|consen 3 SKRIIKELQDLLRDPPPGCSAG-------------------------------------PVGDNLFHWQATILGPPGSPY 45 (148)
T ss_pred HHHHHHHHHHHhcCCCCCCccC-------------------------------------CCCCceeeEEEEEECCCCCCc
Confidence 3589999999999876666553 578999999999999999999
Q ss_pred CCCEEEEEEEcCCCCCCCCCeEEEecCCcCCCCCCCC
Q psy621 250 QGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVYEGT 286 (289)
Q Consensus 250 ~~g~~~~~i~~~~~yP~~pP~v~f~t~i~hpnv~~~~ 286 (289)
|||+|++.|.||++||++||+|+|.|+||||||++.|
T Consensus 46 EgG~F~l~I~~p~~YP~~PPkV~F~TkIyHPNI~~~G 82 (148)
T KOG0417|consen 46 EGGVFFLEIHFPEDYPFKPPKVRFLTKIYHPNIDSNG 82 (148)
T ss_pred CCCEEEEEEECCCCCCCCCCceEeecccccCCcCccc
Confidence 9999999999999999999999999999999999765
No 4
>COG5078 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=1.1e-24 Score=173.08 Aligned_cols=82 Identities=48% Similarity=0.937 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHHHHhCCCCeEeeccccccccchhhhcchhhhhhhhhceeeeEEeeeccccCCCCcceEEEEEeCCCCCC
Q psy621 169 MEKEMVKELRRIAHESSLNVSVFHPYFVFFDQFELVRPTTIQSMLGGSVTMMFIRFRVKLVNDDNLFEWEVAIFGPPDTL 248 (289)
Q Consensus 169 ~~~~~~~~~r~ia~~~~~~~~~~~~~~~~~DQ~~~i~~~tiq~~~~a~~~m~~v~~~~i~~~~~~~~~w~~~i~gp~~t~ 248 (289)
..+|+++|+.++.+..+..+++. |.+++|+++|+++|.||++||
T Consensus 6 a~~RL~kE~~~l~~~~~~~~~a~------------------------------------p~~d~~l~~w~~~i~GP~dtp 49 (153)
T COG5078 6 ALKRLLKELKKLQKDPPPGISAG------------------------------------PVDDDNLFHWEATITGPPDTP 49 (153)
T ss_pred HHHHHHHHHHHHhcCCCCceEEE------------------------------------ECCCCcceeEEEEEECCCCCC
Confidence 67899999999999976777765 234449999999999999999
Q ss_pred CCCCEEEEEEEcCCCCCCCCCeEEEecCCcCCCCCCCC
Q psy621 249 YQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVYEGT 286 (289)
Q Consensus 249 y~~g~~~~~i~~~~~yP~~pP~v~f~t~i~hpnv~~~~ 286 (289)
|+||+|++.|.||++||++||+|+|.|+||||||+.+|
T Consensus 50 Yegg~f~~~l~fP~~YP~~PPkv~F~t~i~HPNV~~~G 87 (153)
T COG5078 50 YEGGIFKLTLEFPEDYPFKPPKVRFTTKIFHPNVDPSG 87 (153)
T ss_pred cCCCEEEEEEECCCCCCCCCCeeeeccCCcCCCcCCCC
Confidence 99999999999999999999999999999999999555
No 5
>KOG0419|consensus
Probab=99.91 E-value=9.9e-25 Score=163.77 Aligned_cols=98 Identities=29% Similarity=0.532 Sum_probs=92.8
Q ss_pred CChHHHHHHHHHHHHhhhCCCCCeEEEecCCCCceEEEEEEeCCCCCCccCcEEEEEE--cCCCCCCCcccceecccccc
Q psy621 5 PTSSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAII--EGELPHWDVNVQNQIENLTK 82 (289)
Q Consensus 5 ~~~~~~~Rl~kE~~~l~~~~~~g~~~~~~~~~n~~~w~~~i~gp~~t~y~g~~~~v~v--~~~yp~~~P~v~~~~~~~~~ 82 (289)
|+..|.|||+|++++|+++++.|+++.| .++|+..|.++|+||++|||+||.|++.+ +++||.+||.|+|..+.+||
T Consensus 1 MstpArrrLmrDfkrlqedpp~gisa~P-~~~niM~W~a~I~Gp~~tp~e~gtFkLtl~FteeYpnkPP~VrFvs~mFHP 79 (152)
T KOG0419|consen 1 MSTPARRRLMRDFKRLQEDPPAGISAAP-VENNIMEWNAVIFGPQDTPFEGGTFKLTLEFTEEYPNKPPTVRFVSKMFHP 79 (152)
T ss_pred CCchHHHHHHHHHHHhhcCCCCCccCCC-CccceeeeeeeEEcCCCCCcCCceEEEEEEcccccCCCCCeeEeeeeccCC
Confidence 5679999999999999999999999997 66799999999999999999999998876 69999999999999999999
Q ss_pred ceeccceeeCccccCccchHH
Q psy621 83 TFEASSFISAPLYTESWLRSF 103 (289)
Q Consensus 83 ~~e~~~~~~~~~~~~~Wl~~y 103 (289)
|+..+|.+|++++...|.+.|
T Consensus 80 Nvya~G~iClDiLqNrWsp~Y 100 (152)
T KOG0419|consen 80 NVYADGSICLDILQNRWSPTY 100 (152)
T ss_pred CcCCCCcchHHHHhcCCCCch
Confidence 999999999999999998887
No 6
>KOG0426|consensus
Probab=99.91 E-value=6.6e-24 Score=159.20 Aligned_cols=126 Identities=29% Similarity=0.461 Sum_probs=106.8
Q ss_pred CChHHHHHHHHHHHHhhhCCCCCeEEEecCCCCceEEEEEEeCCCCCCccCcEE--EEEEcCCCCCCCcccceecccccc
Q psy621 5 PTSSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYF--KAIIEGELPHWDVNVQNQIENLTK 82 (289)
Q Consensus 5 ~~~~~~~Rl~kE~~~l~~~~~~g~~~~~~~~~n~~~w~~~i~gp~~t~y~g~~~--~v~v~~~yp~~~P~v~~~~~~~~~ 82 (289)
|+..|+|||++||++|.+++++||.+.|.++||++.|.|.|.||++|+|+||.| ++.++.+||++||+.+|...++||
T Consensus 1 m~~~AlkRLm~EykqLt~~~P~GIvAgP~~EdnfF~W~cLI~GP~~T~f~~GvfpA~l~FP~DYPLsPPkm~Ftc~~fHP 80 (165)
T KOG0426|consen 1 MAGTALKRLMAEYKQLTLNPPEGIVAGPINEDNFFEWECLIQGPEDTCFEGGVFPARLSFPLDYPLSPPKMRFTCEMFHP 80 (165)
T ss_pred CchhHHHHHHHHHHHHccCCCCcceeCCCCccceeeeeeeeeCCCCCcccCCccceeeecCCCCCCCCCceeeecccccC
Confidence 456899999999999999999999999999999999999999999999999998 667799999999999999999999
Q ss_pred ceeccceeeCccc-------------cCccchH---------HHHHhhhcc--cccccCC-----CchhhHHHHhHH
Q psy621 83 TFEASSFISAPLY-------------TESWLRS---------FVSYVRRNQ--DFLNVTI-----DTREGFLKTLND 130 (289)
Q Consensus 83 ~~e~~~~~~~~~~-------------~~~Wl~~---------y~~~l~~~~--~~~n~~~-----~~~~~F~~~l~~ 130 (289)
|+..+|.+|.+++ .+.|.+- ..++|...+ ..+|++. +++++|.+.++.
T Consensus 81 Niy~dG~VCISILHaPGDDP~~YEls~ERWSPVQSvEKILLSV~SMLaEPNdESgANvdA~~mWRe~R~ef~~i~~~ 157 (165)
T KOG0426|consen 81 NIYPDGRVCISILHAPGDDPMGYELSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDACKMWREDREEFEKIAKR 157 (165)
T ss_pred cccCCCeEEEEEeeCCCCCCccchhhhhcCChHHHHHHHHHHHHHHHcCCCcccCcccHHHHHHHHhHHHHHHHHHH
Confidence 9999999999987 4678654 345555432 2345443 678888777665
No 7
>KOG0419|consensus
Probab=99.90 E-value=1.9e-23 Score=156.88 Aligned_cols=84 Identities=35% Similarity=0.839 Sum_probs=78.2
Q ss_pred chHHHHHHHHHHHHHHhCCCCeEeeccccccccchhhhcchhhhhhhhhceeeeEEeeeccccCCCCcceEEEEEeCCCC
Q psy621 167 GNMEKEMVKELRRIAHESSLNVSVFHPYFVFFDQFELVRPTTIQSMLGGSVTMMFIRFRVKLVNDDNLFEWEVAIFGPPD 246 (289)
Q Consensus 167 ~~~~~~~~~~~r~ia~~~~~~~~~~~~~~~~~DQ~~~i~~~tiq~~~~a~~~m~~v~~~~i~~~~~~~~~w~~~i~gp~~ 246 (289)
...++++|++++++.++.+.+++.- |.++|+..|.++|.||.+
T Consensus 3 tpArrrLmrDfkrlqedpp~gisa~-------------------------------------P~~~niM~W~a~I~Gp~~ 45 (152)
T KOG0419|consen 3 TPARRRLMRDFKRLQEDPPAGISAA-------------------------------------PVENNIMEWNAVIFGPQD 45 (152)
T ss_pred chHHHHHHHHHHHhhcCCCCCccCC-------------------------------------CCccceeeeeeeEEcCCC
Confidence 3467899999999999988888775 789999999999999999
Q ss_pred CCCCCCEEEEEEEcCCCCCCCCCeEEEecCCcCCCCCCCCC
Q psy621 247 TLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVYEGTA 287 (289)
Q Consensus 247 t~y~~g~~~~~i~~~~~yP~~pP~v~f~t~i~hpnv~~~~~ 287 (289)
|||+||+|+|.|+|+++||.+||.|+|.++.||||||.+|.
T Consensus 46 tp~e~gtFkLtl~FteeYpnkPP~VrFvs~mFHPNvya~G~ 86 (152)
T KOG0419|consen 46 TPFEGGTFKLTLEFTEEYPNKPPTVRFVSKMFHPNVYADGS 86 (152)
T ss_pred CCcCCceEEEEEEcccccCCCCCeeEeeeeccCCCcCCCCc
Confidence 99999999999999999999999999999999999999964
No 8
>KOG1934|consensus
Probab=99.90 E-value=5.1e-24 Score=210.76 Aligned_cols=170 Identities=28% Similarity=0.451 Sum_probs=152.7
Q ss_pred cEEEEEEcCCCCCCCcccceeccccccceeccceeeCccccCccchHHHHHhhhcccccccCCCchhhHHHHhHHhhccC
Q psy621 56 GYFKAIIEGELPHWDVNVQNQIENLTKTFEASSFISAPLYTESWLRSFVSYVRRNQDFLNVTIDTREGFLKTLNDLWLFK 135 (289)
Q Consensus 56 ~~~~v~v~~~yp~~~P~v~~~~~~~~~~~e~~~~~~~~~~~~~Wl~~y~~~l~~~~~~~n~~~~~~~~F~~~l~~~~~~~ 135 (289)
....+.|.++.+++.|..+.+...+...||+.+++.|+.++.+||++|++|....+ ....++.++|...+.+.|+..
T Consensus 524 ~~v~v~V~np~dl~~~~~~~~~~~~~~~fE~~~~~~G~~sT~~wlr~y~~~~~~~~---~~~~~~~~~~~~~~~~~fl~~ 600 (868)
T KOG1934|consen 524 QQVAVFVNNPPDLSNPENRDNLNELVSEFESTPYSMGRESTKFWLREYLNFLFEKN---AELEDNDDEFYDHLYESFLKS 600 (868)
T ss_pred ceEEEEEcCCccCCCHHHHHHHHHHHHHHhcCCcccCcccchhHHHHHHHHHhhhc---ccccCCCcchhhhhHHHHhcc
Confidence 35789999999999999999999999999999999999999999999999965331 112244677888888778776
Q ss_pred CC--CCccceEEc---CCCCeEEEEEEEEEEEecCCchHHHHHHHHHHHHHHhC-CCCeEeeccccccccchhhhcchhh
Q psy621 136 PN--PFSLDIKFN---DDGTKIIASRFMIQAVNITDGNMEKEMVKELRRIAHES-SLNVSVFHPYFVFFDQFELVRPTTI 209 (289)
Q Consensus 136 ~~--~~~~di~~~---~~~~~i~asrf~~~~~~~~~~~~~~~~~~~~r~ia~~~-~~~~~~~~~~~~~~DQ~~~i~~~ti 209 (289)
+. +|..||+++ +++..+.++||.+..+++.+|+++.+++++||++|+++ ++|+++|+|++.|+|||++++|+|+
T Consensus 601 ~~~~~~~~di~~~~~~~~~~~i~~f~f~~~~~~~~~~~~~~~~~~~~R~ia~~~~~fnvtvf~~~~~f~Dq~~~v~~~ti 680 (868)
T KOG1934|consen 601 PEFSFWRNDIVFDNKSDEETIIFAFRFTIGLTNLTKWNERTRLLETWRKIADEYSDFNVTVFDPSFVFLDQYLSVVPVTI 680 (868)
T ss_pred cccccCccceEeccCCCCCceEEEEEEEEEEeccCCHHHHHHHHHHHHHHHhhccCCCeEEecCchHHHHHHHHhccHHH
Confidence 63 899999999 56667899999999999999999999999999999885 7999999999999999999999999
Q ss_pred hhhhhhceeeeEEeeeccc
Q psy621 210 QSMLGGSVTMMFIRFRVKL 228 (289)
Q Consensus 210 q~~~~a~~~m~~v~~~~i~ 228 (289)
|++++|++||++||++|||
T Consensus 681 ~~~~~a~i~M~~v~~lfIp 699 (868)
T KOG1934|consen 681 QSIVIALICMFLVCFLFIP 699 (868)
T ss_pred HHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999
No 9
>PTZ00390 ubiquitin-conjugating enzyme; Provisional
Probab=99.89 E-value=7.8e-23 Score=164.65 Aligned_cols=123 Identities=18% Similarity=0.330 Sum_probs=103.7
Q ss_pred HHHHHHHHHHHHhhhCCCCCeEEEecCCCCceEEEEEEeCCCCCCccCcEEEEEE--cCCCCCCCcccceecccccccee
Q psy621 8 SALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAII--EGELPHWDVNVQNQIENLTKTFE 85 (289)
Q Consensus 8 ~~~~Rl~kE~~~l~~~~~~g~~~~~~~~~n~~~w~~~i~gp~~t~y~g~~~~v~v--~~~yp~~~P~v~~~~~~~~~~~e 85 (289)
++.|||+||+++|++++++|+.+.+ .++|+++|++.|.||++|+|+||.|++.+ +++||++||+++|.++++|||+.
T Consensus 2 ~~~kRl~~E~~~l~~~~~~~i~~~~-~~~d~~~w~~~i~GP~~tpY~gg~f~~~i~~p~~YP~~pP~v~F~t~i~HPNV~ 80 (152)
T PTZ00390 2 SISKRIEKETQNLANDPPPGIKAEP-DPGNYRHFKILMEGPDGTPYEGGYYKLELFLPEQYPMEPPKVRFLTKIYHPNID 80 (152)
T ss_pred cHHHHHHHHHHHHHhCCCCCeEEEE-CCCCccEEEEEEEcCCCCCCcCcEEEEEEECccccCCCCCEEEEecCCeeceEC
Confidence 3679999999999999999999996 66799999999999999999999986655 89999999999999999999999
Q ss_pred ccceeeCccccCccchHH---------HHHhhhc--ccccccC-----CCchhhHHHHhHHh
Q psy621 86 ASSFISAPLYTESWLRSF---------VSYVRRN--QDFLNVT-----IDTREGFLKTLNDL 131 (289)
Q Consensus 86 ~~~~~~~~~~~~~Wl~~y---------~~~l~~~--~~~~n~~-----~~~~~~F~~~l~~~ 131 (289)
.+|.+|++++.+.|.+++ +++|... ++++|.+ .++.+.|.+.++++
T Consensus 81 ~~G~iCl~iL~~~W~p~~ti~~iL~~i~~ll~~P~~~~pln~~aa~~~~~d~~~f~~~a~~~ 142 (152)
T PTZ00390 81 KLGRICLDILKDKWSPALQIRTVLLSIQALLSAPEPDDPLDTSVADHFKNNRADAEKVAREW 142 (152)
T ss_pred CCCeEECccCcccCCCCCcHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHCHHHHHHHHHHH
Confidence 999999999989998885 3444321 3333333 35788888888874
No 10
>PTZ00390 ubiquitin-conjugating enzyme; Provisional
Probab=99.89 E-value=6e-23 Score=165.31 Aligned_cols=81 Identities=32% Similarity=0.669 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHHHHhCCCCeEeeccccccccchhhhcchhhhhhhhhceeeeEEeeeccccCCCCcceEEEEEeCCCCCC
Q psy621 169 MEKEMVKELRRIAHESSLNVSVFHPYFVFFDQFELVRPTTIQSMLGGSVTMMFIRFRVKLVNDDNLFEWEVAIFGPPDTL 248 (289)
Q Consensus 169 ~~~~~~~~~r~ia~~~~~~~~~~~~~~~~~DQ~~~i~~~tiq~~~~a~~~m~~v~~~~i~~~~~~~~~w~~~i~gp~~t~ 248 (289)
..+|+.+|++++.++.+.++.+. +.++|+++|+++|.||++||
T Consensus 3 ~~kRl~~E~~~l~~~~~~~i~~~-------------------------------------~~~~d~~~w~~~i~GP~~tp 45 (152)
T PTZ00390 3 ISKRIEKETQNLANDPPPGIKAE-------------------------------------PDPGNYRHFKILMEGPDGTP 45 (152)
T ss_pred HHHHHHHHHHHHHhCCCCCeEEE-------------------------------------ECCCCccEEEEEEEcCCCCC
Confidence 35799999999998877777765 56789999999999999999
Q ss_pred CCCCEEEEEEEcCCCCCCCCCeEEEecCCcCCCCCCCC
Q psy621 249 YQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVYEGT 286 (289)
Q Consensus 249 y~~g~~~~~i~~~~~yP~~pP~v~f~t~i~hpnv~~~~ 286 (289)
|+||.|+++|.||++||++||+|+|.|+||||||+++|
T Consensus 46 Y~gg~f~~~i~~p~~YP~~pP~v~F~t~i~HPNV~~~G 83 (152)
T PTZ00390 46 YEGGYYKLELFLPEQYPMEPPKVRFLTKIYHPNIDKLG 83 (152)
T ss_pred CcCcEEEEEEECccccCCCCCEEEEecCCeeceECCCC
Confidence 99999999999999999999999999999999999865
No 11
>PLN00172 ubiquitin conjugating enzyme; Provisional
Probab=99.89 E-value=1e-22 Score=163.28 Aligned_cols=122 Identities=24% Similarity=0.399 Sum_probs=101.7
Q ss_pred HHHHHHHHHHHhhhCCCCCeEEEecCCCCceEEEEEEeCCCCCCccCcEEEEEE--cCCCCCCCcccceeccccccceec
Q psy621 9 ALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAII--EGELPHWDVNVQNQIENLTKTFEA 86 (289)
Q Consensus 9 ~~~Rl~kE~~~l~~~~~~g~~~~~~~~~n~~~w~~~i~gp~~t~y~g~~~~v~v--~~~yp~~~P~v~~~~~~~~~~~e~ 86 (289)
|.+||+||+++|++++++|+.+.+ .++|+++|++.|.||++|+|+||.|++.+ +++||+.||+++|.++++|||+..
T Consensus 2 a~~Rl~kE~~~l~~~~~~~~~~~~-~~~nl~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPNv~~ 80 (147)
T PLN00172 2 ATKRIQKEHKDLLKDPPSNCSAGP-SDENLFRWTASIIGPSDSPYAGGVFFLSILFPPDYPFKPPKVQFTTKIYHPNINS 80 (147)
T ss_pred hHHHHHHHHHHHHhCCCCCeEEEE-CCCChheEEEEEECCCCCCCCCCEEEEEEECCcccCCCCCEEEEecCcccceECC
Confidence 369999999999999999999996 67799999999999999999999886655 899999999999999999999999
Q ss_pred cceeeCccccCccchHH---------HHHhhhc--ccccccC-----CCchhhHHHHhHHh
Q psy621 87 SSFISAPLYTESWLRSF---------VSYVRRN--QDFLNVT-----IDTREGFLKTLNDL 131 (289)
Q Consensus 87 ~~~~~~~~~~~~Wl~~y---------~~~l~~~--~~~~n~~-----~~~~~~F~~~l~~~ 131 (289)
+|.+|++++.+.|.+++ +.+|... ++++|.+ .++.+.|.+.++++
T Consensus 81 ~G~iCl~il~~~W~p~~ti~~il~~i~~ll~~P~~~~p~n~~aa~~~~~~~~~f~~~a~~~ 141 (147)
T PLN00172 81 NGSICLDILRDQWSPALTVSKVLLSISSLLTDPNPDDPLVPEIARVFKENRSRYEATAREW 141 (147)
T ss_pred CCEEEcccCcCCCCCcCcHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHCHHHHHHHHHHH
Confidence 99999999989998885 3344321 2333332 25677788777773
No 12
>PLN00172 ubiquitin conjugating enzyme; Provisional
Probab=99.88 E-value=1.9e-22 Score=161.76 Aligned_cols=80 Identities=39% Similarity=0.806 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHHHhCCCCeEeeccccccccchhhhcchhhhhhhhhceeeeEEeeeccccCCCCcceEEEEEeCCCCCCC
Q psy621 170 EKEMVKELRRIAHESSLNVSVFHPYFVFFDQFELVRPTTIQSMLGGSVTMMFIRFRVKLVNDDNLFEWEVAIFGPPDTLY 249 (289)
Q Consensus 170 ~~~~~~~~r~ia~~~~~~~~~~~~~~~~~DQ~~~i~~~tiq~~~~a~~~m~~v~~~~i~~~~~~~~~w~~~i~gp~~t~y 249 (289)
.+|+++|++++.++.+.++.+. +.++|+++|+++|.||++|||
T Consensus 3 ~~Rl~kE~~~l~~~~~~~~~~~-------------------------------------~~~~nl~~w~~~i~GP~~tpy 45 (147)
T PLN00172 3 TKRIQKEHKDLLKDPPSNCSAG-------------------------------------PSDENLFRWTASIIGPSDSPY 45 (147)
T ss_pred HHHHHHHHHHHHhCCCCCeEEE-------------------------------------ECCCChheEEEEEECCCCCCC
Confidence 4799999999998866666554 567899999999999999999
Q ss_pred CCCEEEEEEEcCCCCCCCCCeEEEecCCcCCCCCCCC
Q psy621 250 QGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVYEGT 286 (289)
Q Consensus 250 ~~g~~~~~i~~~~~yP~~pP~v~f~t~i~hpnv~~~~ 286 (289)
+||.|+++|.||++||++||+|+|.|+||||||+.+|
T Consensus 46 egg~f~~~i~fp~~YP~~pP~v~f~t~i~HPNv~~~G 82 (147)
T PLN00172 46 AGGVFFLSILFPPDYPFKPPKVQFTTKIYHPNINSNG 82 (147)
T ss_pred CCCEEEEEEECCcccCCCCCEEEEecCcccceECCCC
Confidence 9999999999999999999999999999999999765
No 13
>KOG0425|consensus
Probab=99.88 E-value=3.2e-22 Score=154.96 Aligned_cols=125 Identities=36% Similarity=0.594 Sum_probs=104.9
Q ss_pred ChHHHHHHHHHHHHhhhCCCCCeEEEecCCCCceEEEEEEeCCCCCCccCcEEEEE--EcCCCCCCCcccceeccccccc
Q psy621 6 TSSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAI--IEGELPHWDVNVQNQIENLTKT 83 (289)
Q Consensus 6 ~~~~~~Rl~kE~~~l~~~~~~g~~~~~~~~~n~~~w~~~i~gp~~t~y~g~~~~v~--v~~~yp~~~P~v~~~~~~~~~~ 83 (289)
++.+..-|+++|++|+++|.+|+.++++++.|++.|.+.|.||++|.|+||.|+.. +|++||++||+++|.++++|||
T Consensus 3 ~~~a~~ll~~qlk~L~~~pv~gf~~glvd~~dif~WeV~i~gppdTlYeGG~FkA~m~FP~dYP~sPP~~rF~s~mwHPN 82 (171)
T KOG0425|consen 3 SSQASLLLLKQLKELQEEPVEGFSVGLVDDSDIFEWEVAIIGPPDTLYEGGFFKAHMKFPQDYPLSPPTFRFTSKMWHPN 82 (171)
T ss_pred cchhHHHHHHHHHHHhcCCCCccccccccCCceeEEEEEEEcCCCccccCceeEEEEeCcccCCCCCCceeeehhhcCCC
Confidence 45588889999999999999999999989999999999999999999999999655 5899999999999999999999
Q ss_pred eeccceeeCccc-------------cCccchH---------HHHHhhhc--ccccccCC-----CchhhHHHHhHH
Q psy621 84 FEASSFISAPLY-------------TESWLRS---------FVSYVRRN--QDFLNVTI-----DTREGFLKTLND 130 (289)
Q Consensus 84 ~e~~~~~~~~~~-------------~~~Wl~~---------y~~~l~~~--~~~~n~~~-----~~~~~F~~~l~~ 130 (289)
+..+|.+|.+++ .+.|++. ..++|+.. +.++|+++ ++.++|.+.+..
T Consensus 83 vy~~G~vCISILH~pgdD~~gyE~~~erW~Pv~tvetIllSiIsmL~~PN~~SPANVDAa~~~Ren~~EykkkV~r 158 (171)
T KOG0425|consen 83 VYEDGDVCISILHPPGDDPSGYELPSERWLPVQTVETILLSIISMLNSPNDESPANVDAAKEWRENPEEYKKKVRR 158 (171)
T ss_pred cCCCCCEEEEeecCCCCCcccCCChhhccCCccchhHhHHHHHHHHcCCCCCCccchHHHHHHhhCHHHHHHHHHH
Confidence 999999999997 3567664 56666643 45667664 455666665544
No 14
>KOG0421|consensus
Probab=99.85 E-value=2.5e-21 Score=147.52 Aligned_cols=129 Identities=24% Similarity=0.346 Sum_probs=107.4
Q ss_pred CCChHHHHHHHHHHHHhhhCCCCCeEEEecCCCCceEEEEEEeCCCCCCccCcEEEEEE--cCCCCCCCcccceeccccc
Q psy621 4 VPTSSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAII--EGELPHWDVNVQNQIENLT 81 (289)
Q Consensus 4 ~~~~~~~~Rl~kE~~~l~~~~~~g~~~~~~~~~n~~~w~~~i~gp~~t~y~g~~~~v~v--~~~yp~~~P~v~~~~~~~~ 81 (289)
....+..|||++||..|.....+||++.| ++||+++|...|.||.+|+|+|-.|++.+ +++||+.||.|.|.+.++|
T Consensus 25 ~~~~~V~KRLq~ELm~Lmms~~~gISAFP-~~dnlf~WvGtItGp~dTvyegl~yklSl~Fp~~YPy~pP~vkFltpc~H 103 (175)
T KOG0421|consen 25 VDGHSVTKRLQSELMGLMMSNTPGISAFP-ESDNLFKWVGTITGPKDTVYEGLKYKLSLSFPNNYPYKPPTVKFLTPCFH 103 (175)
T ss_pred ccCchHHHHHHHHHHHHHhcCCCCcccCc-CcCceeEEeeEeeCCCCccccCcEEEEEEecCCCCCCCCCeeEeeccccC
Confidence 34566789999999999999999999997 66799999999999999999998887665 8999999999999999999
Q ss_pred cceeccceeeCccccCccchHH---------HHHhhhc--ccccccC----CCchhhHHHHhHHhhc
Q psy621 82 KTFEASSFISAPLYTESWLRSF---------VSYVRRN--QDFLNVT----IDTREGFLKTLNDLWL 133 (289)
Q Consensus 82 ~~~e~~~~~~~~~~~~~Wl~~y---------~~~l~~~--~~~~n~~----~~~~~~F~~~l~~~~~ 133 (289)
||++-.|.+|++++.+.|...| +++|... ..++|.. .++.++|.+.|..+..
T Consensus 104 PNVD~~GnIcLDILkdKWSa~YdVrTILLSiQSLLGEPNn~SPLNaqAAelW~d~~eykk~l~~~Y~ 170 (175)
T KOG0421|consen 104 PNVDLSGNICLDILKDKWSAVYDVRTILLSIQSLLGEPNNSSPLNAQAAELWSDQEEYKKYLEALYK 170 (175)
T ss_pred CCccccccchHHHHHHHHHHHHhHHHHHHHHHHHhCCCCCCCcchhHHHHHhcCHHHHHHHHHHHhh
Confidence 9999999999999999997765 4444421 2333332 3678888888877543
No 15
>KOG0425|consensus
Probab=99.85 E-value=3e-21 Score=149.59 Aligned_cols=59 Identities=73% Similarity=1.452 Sum_probs=57.1
Q ss_pred cCCCCcceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEecCCcCCCCCCCCC
Q psy621 229 VNDDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVYEGTA 287 (289)
Q Consensus 229 ~~~~~~~~w~~~i~gp~~t~y~~g~~~~~i~~~~~yP~~pP~v~f~t~i~hpnv~~~~~ 287 (289)
.++.|++.|.+.|+||++|.|+||.|+..+.||.+||.+||+++|+|++||||||++|.
T Consensus 30 vd~~dif~WeV~i~gppdTlYeGG~FkA~m~FP~dYP~sPP~~rF~s~mwHPNvy~~G~ 88 (171)
T KOG0425|consen 30 VDDSDIFEWEVAIIGPPDTLYEGGFFKAHMKFPQDYPLSPPTFRFTSKMWHPNVYEDGD 88 (171)
T ss_pred ccCCceeEEEEEEEcCCCccccCceeEEEEeCcccCCCCCCceeeehhhcCCCcCCCCC
Confidence 67889999999999999999999999999999999999999999999999999999884
No 16
>KOG0418|consensus
Probab=99.85 E-value=1.9e-21 Score=155.26 Aligned_cols=83 Identities=36% Similarity=0.719 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHHHHhC---CCCeEeeccccccccchhhhcchhhhhhhhhceeeeEEeeeccccCCCCcceEEEEEeCCC
Q psy621 169 MEKEMVKELRRIAHES---SLNVSVFHPYFVFFDQFELVRPTTIQSMLGGSVTMMFIRFRVKLVNDDNLFEWEVAIFGPP 245 (289)
Q Consensus 169 ~~~~~~~~~r~ia~~~---~~~~~~~~~~~~~~DQ~~~i~~~tiq~~~~a~~~m~~v~~~~i~~~~~~~~~w~~~i~gp~ 245 (289)
..+|+.++.++..++. ..++.+- ...+|+.+.++.|.||+
T Consensus 4 ~~~ri~~e~k~v~~~~eisq~~I~ve-------------------------------------~vn~~~~~ikG~I~GP~ 46 (200)
T KOG0418|consen 4 AFKRINREQKEVLDDPEISQAGIIVE-------------------------------------MVNENLKEIKGHIAGPE 46 (200)
T ss_pred HHHHHHHHHHHhccChhhhhcceEEE-------------------------------------EccCChhhceeEecCCC
Confidence 5678899999988875 2344432 34579999999999999
Q ss_pred CCCCCCCEEEEEEEcCCCCCCCCCeEEEecCCcCCCCCCCCCc
Q psy621 246 DTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVYEGTAQ 288 (289)
Q Consensus 246 ~t~y~~g~~~~~i~~~~~yP~~pP~v~f~t~i~hpnv~~~~~~ 288 (289)
|||||||+|.++|++|++||++||+|+|.|+||||||.+.+|.
T Consensus 47 ~TPYEGG~FeldI~iPe~YPF~pPkv~F~TkIwHPnVSs~tGa 89 (200)
T KOG0418|consen 47 DTPYEGGVFELDIKIPENYPFKPPKVKFITKIWHPNVSSQTGA 89 (200)
T ss_pred CCCCCCceEEEEEecCCCCCCCCCceeeeeeeecCCCCccccc
Confidence 9999999999999999999999999999999999999998885
No 17
>KOG0426|consensus
Probab=99.84 E-value=7.7e-21 Score=142.75 Aligned_cols=85 Identities=39% Similarity=0.838 Sum_probs=78.5
Q ss_pred chHHHHHHHHHHHHHHhCCCCeEeeccccccccchhhhcchhhhhhhhhceeeeEEeeeccccCCCCcceEEEEEeCCCC
Q psy621 167 GNMEKEMVKELRRIAHESSLNVSVFHPYFVFFDQFELVRPTTIQSMLGGSVTMMFIRFRVKLVNDDNLFEWEVAIFGPPD 246 (289)
Q Consensus 167 ~~~~~~~~~~~r~ia~~~~~~~~~~~~~~~~~DQ~~~i~~~tiq~~~~a~~~m~~v~~~~i~~~~~~~~~w~~~i~gp~~ 246 (289)
....+|+|+|++++-.+.+.++.+- |.+++|.+.|.|.|.||++
T Consensus 3 ~~AlkRLm~EykqLt~~~P~GIvAg------------------------------------P~~EdnfF~W~cLI~GP~~ 46 (165)
T KOG0426|consen 3 GTALKRLMAEYKQLTLNPPEGIVAG------------------------------------PINEDNFFEWECLIQGPED 46 (165)
T ss_pred hhHHHHHHHHHHHHccCCCCcceeC------------------------------------CCCccceeeeeeeeeCCCC
Confidence 3567899999999999988887765 3688999999999999999
Q ss_pred CCCCCCEEEEEEEcCCCCCCCCCeEEEecCCcCCCCCCCCC
Q psy621 247 TLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVYEGTA 287 (289)
Q Consensus 247 t~y~~g~~~~~i~~~~~yP~~pP~v~f~t~i~hpnv~~~~~ 287 (289)
|+|+||+|-.++.||.+||.+||+++|...+||||||.+|.
T Consensus 47 T~f~~GvfpA~l~FP~DYPLsPPkm~Ftc~~fHPNiy~dG~ 87 (165)
T KOG0426|consen 47 TCFEGGVFPARLSFPLDYPLSPPKMRFTCEMFHPNIYPDGR 87 (165)
T ss_pred CcccCCccceeeecCCCCCCCCCceeeecccccCcccCCCe
Confidence 99999999999999999999999999999999999999874
No 18
>PF00179 UQ_con: Ubiquitin-conjugating enzyme; InterPro: IPR000608 The post-translational attachment of ubiquitin (IPR000626 from INTERPRO) to proteins (ubiquitinylation) alters the function, location or trafficking of a protein, or targets it to the 26S proteasome for degradation [, , ]. Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade []. The E1 enzyme mediates an ATP-dependent transfer of a thioester-linked ubiquitin molecule to a cysteine residue on the E2 enzyme. The E2 enzyme (6.3.2.19 from EC) then either transfers the ubiquitin moiety directly to a substrate, or to an E3 ligase, which can also ubiquitinylate a substrate. There are several different E2 enzymes (over 30 in humans), which are broadly grouped into four classes, all of which have a core catalytic domain (containing the active site cysteine), and some of which have short N- and C-terminal amino acid extensions: class I enzymes consist of just the catalytic core domain (UBC), class II possess a UBC and a C-terminal extension, class III possess a UBC and an N-terminal extension, and class IV possess a UBC and both N- and C-terminal extensions. These extensions appear to be important for some subfamily function, including E2 localisation and protein-protein interactions []. In addition, there are proteins with an E2-like fold that are devoid of catalytic activity, but which appear to assist in poly-ubiquitin chain formation.; GO: 0016881 acid-amino acid ligase activity; PDB: 2AAK_A 3SY2_C 1FBV_C 3SQV_C 1C4Z_D 1JAT_B 2GMI_B 2H2Y_D 2R0J_A 3E95_B ....
Probab=99.84 E-value=7.4e-21 Score=151.96 Aligned_cols=78 Identities=50% Similarity=1.012 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHhCCCCeEeeccccccccchhhhcchhhhhhhhhceeeeEEeeeccccCC-CCcceEEEEEeCCCCCCCC
Q psy621 172 EMVKELRRIAHESSLNVSVFHPYFVFFDQFELVRPTTIQSMLGGSVTMMFIRFRVKLVND-DNLFEWEVAIFGPPDTLYQ 250 (289)
Q Consensus 172 ~~~~~~r~ia~~~~~~~~~~~~~~~~~DQ~~~i~~~tiq~~~~a~~~m~~v~~~~i~~~~-~~~~~w~~~i~gp~~t~y~ 250 (289)
|+++|++.+.++.+.++.+. +.+ +|+.+|+++|.||++|||+
T Consensus 1 Rl~~E~~~l~~~~~~~~~~~-------------------------------------~~~~~~~~~w~~~i~gp~~t~y~ 43 (140)
T PF00179_consen 1 RLQKELKELQKNPPPGISVQ-------------------------------------PSEDDNLFEWHVTIFGPPGTPYE 43 (140)
T ss_dssp HHHHHHHHHHHSHTTTEEEE-------------------------------------EESTTETTEEEEEEEBETTSTTT
T ss_pred CHHHHHHHHhhCCCCCEEEE-------------------------------------ECCCCChheEEEEEeccCcccee
Confidence 68899999988877787775 334 4999999999999999999
Q ss_pred CCEEEEEEEcCCCCCCCCCeEEEecCCcCCCCCCCC
Q psy621 251 GGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVYEGT 286 (289)
Q Consensus 251 ~g~~~~~i~~~~~yP~~pP~v~f~t~i~hpnv~~~~ 286 (289)
||.|+++|.||++||++||+|+|.|+||||||+.+|
T Consensus 44 gg~f~~~i~~p~~YP~~pP~v~f~t~i~HPni~~~G 79 (140)
T PF00179_consen 44 GGIFKFRISFPPDYPFSPPKVRFLTPIFHPNIDENG 79 (140)
T ss_dssp TSEEEEEEEETTTTTTS--EEEESSS-SBTTB-TTS
T ss_pred cccccccccccccccccccccccccccccccccccc
Confidence 999999999999999999999999999999999554
No 19
>KOG0421|consensus
Probab=99.82 E-value=7.1e-20 Score=139.60 Aligned_cols=85 Identities=39% Similarity=0.745 Sum_probs=77.6
Q ss_pred CchHHHHHHHHHHHHHHhCCCCeEeeccccccccchhhhcchhhhhhhhhceeeeEEeeeccccCCCCcceEEEEEeCCC
Q psy621 166 DGNMEKEMVKELRRIAHESSLNVSVFHPYFVFFDQFELVRPTTIQSMLGGSVTMMFIRFRVKLVNDDNLFEWEVAIFGPP 245 (289)
Q Consensus 166 ~~~~~~~~~~~~r~ia~~~~~~~~~~~~~~~~~DQ~~~i~~~tiq~~~~a~~~m~~v~~~~i~~~~~~~~~w~~~i~gp~ 245 (289)
...-.+|+..|+-.+.-.-.-++++| |+++|+++|..+|.||.
T Consensus 27 ~~~V~KRLq~ELm~Lmms~~~gISAF-------------------------------------P~~dnlf~WvGtItGp~ 69 (175)
T KOG0421|consen 27 GHSVTKRLQSELMGLMMSNTPGISAF-------------------------------------PESDNLFKWVGTITGPK 69 (175)
T ss_pred CchHHHHHHHHHHHHHhcCCCCcccC-------------------------------------cCcCceeEEeeEeeCCC
Confidence 34455789999998888767788888 78899999999999999
Q ss_pred CCCCCCCEEEEEEEcCCCCCCCCCeEEEecCCcCCCCCCCCC
Q psy621 246 DTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVYEGTA 287 (289)
Q Consensus 246 ~t~y~~g~~~~~i~~~~~yP~~pP~v~f~t~i~hpnv~~~~~ 287 (289)
+|+|+|-.|++.+.||.+||++||.|+|+|++|||||+..|.
T Consensus 70 dTvyegl~yklSl~Fp~~YPy~pP~vkFltpc~HPNVD~~Gn 111 (175)
T KOG0421|consen 70 DTVYEGLKYKLSLSFPNNYPYKPPTVKFLTPCFHPNVDLSGN 111 (175)
T ss_pred CccccCcEEEEEEecCCCCCCCCCeeEeeccccCCCcccccc
Confidence 999999999999999999999999999999999999998875
No 20
>PF02460 Patched: Patched family; InterPro: IPR003392 The transmembrane protein, patched, is a receptor for the morphogene Sonic Hedgehog. In Drosophila melanogaster, this protein associates with the smoothened protein to transduce hedgehog signals, leading to the activation of wingless, decapentaplegic and patched itself. It participates in cell interactions that establish pattern within the segment and imaginal disks during development. The mouse homologue may play a role in epidermal development. The human Niemann-Pick C1 protein, defects in which cause Niemann-Pick type II disease, is also a member of this family. This protein is involved in the intracellular trafficking of cholesterol, and may play a role in vesicular trafficking in glia, a process that may be crucial for maintaining the structural functional integrity of nerve terminals.; GO: 0008158 hedgehog receptor activity, 0016020 membrane
Probab=99.81 E-value=1.1e-20 Score=190.10 Aligned_cols=187 Identities=26% Similarity=0.391 Sum_probs=154.3
Q ss_pred EEEEEeCCCCCCc-cCc-EEEEEEcCCCCCCCcccceeccccccceeccceeeCccccCccchHHHHHhhhcccccccCC
Q psy621 41 WEVAIFGPPDTLY-QGG-YFKAIIEGELPHWDVNVQNQIENLTKTFEASSFISAPLYTESWLRSFVSYVRRNQDFLNVTI 118 (289)
Q Consensus 41 w~~~i~gp~~t~y-~g~-~~~v~v~~~yp~~~P~v~~~~~~~~~~~e~~~~~~~~~~~~~Wl~~y~~~l~~~~~~~n~~~ 118 (289)
+...+....+.+| +.| ...+.+.++.++++|..+.++..++..||+.+++.+...+++|+++|++|++..+. ...+.
T Consensus 474 yl~~~~~~~e~yf~~~g~~v~V~v~~~~d~~~~~~~~~l~~lv~~fe~~~~~~~~~~t~~WL~~y~~~l~~~~~-~~~~~ 552 (798)
T PF02460_consen 474 YLQKFFRLQEKYFFSYGPPVYVVVNNPPDYSDPENQDRLNSLVQEFENSPYSIGNNSTSFWLRDYLNFLNSINS-SFQDD 552 (798)
T ss_pred hhHHHHHHHHHHhhccCceEEEEecCCCCccchHHHHHHHHHHHHHhccccccccccchhhHHHHHHHHhhccc-ccccc
Confidence 3333443444444 323 46778889999999999999999999999999999999999999999999975210 01111
Q ss_pred CchhhHHHHhHHhhccCCC-CCccceEEc---CCCCeEEEEEEEEEEEecCCchHHHHHHHHHHHHHHhC-CCCeEeecc
Q psy621 119 DTREGFLKTLNDLWLFKPN-PFSLDIKFN---DDGTKIIASRFMIQAVNITDGNMEKEMVKELRRIAHES-SLNVSVFHP 193 (289)
Q Consensus 119 ~~~~~F~~~l~~~~~~~~~-~~~~di~~~---~~~~~i~asrf~~~~~~~~~~~~~~~~~~~~r~ia~~~-~~~~~~~~~ 193 (289)
++++.|++.+++|+....+ +|+.|++++ ++++.|.++||.++.+++.+++++.++++++|+++++. ++++.+|++
T Consensus 553 ~~~~~~~~~l~~FL~~~~~~~~~~di~~~~~~~~~~~I~a~rf~~~~~~~~~~~~~~~~~~~~R~i~~~~~~~~~~~~~~ 632 (798)
T PF02460_consen 553 NDKEFFYNLLPEFLNSPEYRHYSNDIKFDDSDNDTTQISAFRFTTQLKNLSDWSDRIEAMKDWRQIADKYSDFNVFVFSP 632 (798)
T ss_pred ccceeeeccchhhhccccccccccccccccccCCccceeeEEEEEEccCCCCHHHHHHHHHHHHHhhhcceecceEeecc
Confidence 1224478888887765443 799999998 55567999999999999999999999999999999974 699999999
Q ss_pred ccccccchhhhcchhhhhhhhhceeeeEEeeeccc
Q psy621 194 YFVFFDQFELVRPTTIQSMLGGSVTMMFIRFRVKL 228 (289)
Q Consensus 194 ~~~~~DQ~~~i~~~tiq~~~~a~~~m~~v~~~~i~ 228 (289)
.+.|+|||..|.++|++++++|++||++||++|++
T Consensus 633 ~~~~~dq~~~i~~~~~~~~~~a~~~~~~v~~l~~~ 667 (798)
T PF02460_consen 633 FFIFYDQYLSIVPETIQNIGIALVCMFVVCLLFIP 667 (798)
T ss_pred chhhHhhhhhcchHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999998
No 21
>cd00195 UBCc Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain. This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin protein ligase enzymes, E3. This pathway regulates many fundamental cellular processes. There are also other E2s which form thiol-ester linkages without the use of E3s as well as several UBC homologs (TSG101, Mms2, Croc-1 and similar proteins) which lack the active site cysteine essential for ubiquitination and appear to function in DNA repair pathways which were omitted from the scope of this CD.
Probab=99.81 E-value=1.6e-19 Score=144.34 Aligned_cols=79 Identities=46% Similarity=0.913 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHHhCCCCeEeeccccccccchhhhcchhhhhhhhhceeeeEEeeeccccCCCCcceEEEEEeCCCCCCCC
Q psy621 171 KEMVKELRRIAHESSLNVSVFHPYFVFFDQFELVRPTTIQSMLGGSVTMMFIRFRVKLVNDDNLFEWEVAIFGPPDTLYQ 250 (289)
Q Consensus 171 ~~~~~~~r~ia~~~~~~~~~~~~~~~~~DQ~~~i~~~tiq~~~~a~~~m~~v~~~~i~~~~~~~~~w~~~i~gp~~t~y~ 250 (289)
+|+++|++.+.++.+.++.+. +.++|+.+|+++|.||++|||+
T Consensus 2 ~Rl~~E~~~l~~~~~~~~~v~-------------------------------------~~~~~~~~w~~~i~g~~~t~y~ 44 (141)
T cd00195 2 KRLQKELKDLKKDPPSGISAE-------------------------------------PVEENLLEWHGTIRGPPDTPYE 44 (141)
T ss_pred chHHHHHHHHHhCCCCCeEEE-------------------------------------ECCCChhEEEEEEecCCCCCcc
Confidence 588999999988877677665 5677999999999999999999
Q ss_pred CCEEEEEEEcCCCCCCCCCeEEEecCCcCCCCCCCC
Q psy621 251 GGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVYEGT 286 (289)
Q Consensus 251 ~g~~~~~i~~~~~yP~~pP~v~f~t~i~hpnv~~~~ 286 (289)
||.|++++.||++||.+||.|+|.|+++||||+++|
T Consensus 45 g~~~~~~~~~p~~yP~~pP~v~f~~~i~HpnV~~~G 80 (141)
T cd00195 45 GGIFKLDIEFPEDYPFKPPKVRFVTKIYHPNVDENG 80 (141)
T ss_pred CCEEEEEEECCCccCCCCCeEEEeCCcccCCCCCCC
Confidence 999999999999999999999999999999999554
No 22
>KOG0418|consensus
Probab=99.80 E-value=1.5e-19 Score=144.47 Aligned_cols=125 Identities=26% Similarity=0.371 Sum_probs=102.5
Q ss_pred CChHHHHHHHHHHHHhhhCC---CCCeEEEecCCCCceEEEEEEeCCCCCCccCcEEEEEE--cCCCCCCCcccceeccc
Q psy621 5 PTSSALRALSMEYKSLQEEP---VEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAII--EGELPHWDVNVQNQIEN 79 (289)
Q Consensus 5 ~~~~~~~Rl~kE~~~l~~~~---~~g~~~~~~~~~n~~~w~~~i~gp~~t~y~g~~~~v~v--~~~yp~~~P~v~~~~~~ 79 (289)
|+. +.+||+||.+++.+++ ..||.++.++ +|+.+.+..|.||+||||+||.|.|.| |+.||++||+|+|.+++
T Consensus 1 m~~-~~~ri~~e~k~v~~~~eisq~~I~ve~vn-~~~~~ikG~I~GP~~TPYEGG~FeldI~iPe~YPF~pPkv~F~TkI 78 (200)
T KOG0418|consen 1 MSN-AFKRINREQKEVLDDPEISQAGIIVEMVN-ENLKEIKGHIAGPEDTPYEGGVFELDIKIPENYPFKPPKVKFITKI 78 (200)
T ss_pred Ccc-HHHHHHHHHHHhccChhhhhcceEEEEcc-CChhhceeEecCCCCCCCCCceEEEEEecCCCCCCCCCceeeeeee
Confidence 344 8999999999999998 6899999755 688999999999999999999997665 89999999999999999
Q ss_pred ccccee-ccceeeCccccCccchHH---------HHHhhhcc--c-----ccccCCCchhhHHHHhHHh
Q psy621 80 LTKTFE-ASSFISAPLYTESWLRSF---------VSYVRRNQ--D-----FLNVTIDTREGFLKTLNDL 131 (289)
Q Consensus 80 ~~~~~e-~~~~~~~~~~~~~Wl~~y---------~~~l~~~~--~-----~~n~~~~~~~~F~~~l~~~ 131 (289)
+|||+. .+|.+|++++.+.|-.++ +.+|+..+ + .+++..++.+-|+..++-|
T Consensus 79 wHPnVSs~tGaICLDilkd~Wa~slTlrtvLislQalL~~pEp~dPqDavva~qy~~n~~~F~~TAr~W 147 (200)
T KOG0418|consen 79 WHPNVSSQTGAICLDILKDQWAASLTLRTVLISLQALLCAPEPKDPQDAVVAEQYVDNYEMFYKTARYW 147 (200)
T ss_pred ecCCCCcccccchhhhhhcccchhhhHHHHHHHHHHHHcCCCCCChHHHHHHHHHhhhHHHHHHHHHHH
Confidence 999995 457899999999997774 44555321 1 1334456777888887773
No 23
>PF00179 UQ_con: Ubiquitin-conjugating enzyme; InterPro: IPR000608 The post-translational attachment of ubiquitin (IPR000626 from INTERPRO) to proteins (ubiquitinylation) alters the function, location or trafficking of a protein, or targets it to the 26S proteasome for degradation [, , ]. Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade []. The E1 enzyme mediates an ATP-dependent transfer of a thioester-linked ubiquitin molecule to a cysteine residue on the E2 enzyme. The E2 enzyme (6.3.2.19 from EC) then either transfers the ubiquitin moiety directly to a substrate, or to an E3 ligase, which can also ubiquitinylate a substrate. There are several different E2 enzymes (over 30 in humans), which are broadly grouped into four classes, all of which have a core catalytic domain (containing the active site cysteine), and some of which have short N- and C-terminal amino acid extensions: class I enzymes consist of just the catalytic core domain (UBC), class II possess a UBC and a C-terminal extension, class III possess a UBC and an N-terminal extension, and class IV possess a UBC and both N- and C-terminal extensions. These extensions appear to be important for some subfamily function, including E2 localisation and protein-protein interactions []. In addition, there are proteins with an E2-like fold that are devoid of catalytic activity, but which appear to assist in poly-ubiquitin chain formation.; GO: 0016881 acid-amino acid ligase activity; PDB: 2AAK_A 3SY2_C 1FBV_C 3SQV_C 1C4Z_D 1JAT_B 2GMI_B 2H2Y_D 2R0J_A 3E95_B ....
Probab=99.80 E-value=1.8e-19 Score=143.98 Aligned_cols=92 Identities=36% Similarity=0.615 Sum_probs=79.1
Q ss_pred HHHHHHHHhhhCCCCCeEEEecCCCCceEEEEEEeCCCCCCccCcEEEEE--EcCCCCCCCcccceeccccccceeccce
Q psy621 12 ALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAI--IEGELPHWDVNVQNQIENLTKTFEASSF 89 (289)
Q Consensus 12 Rl~kE~~~l~~~~~~g~~~~~~~~~n~~~w~~~i~gp~~t~y~g~~~~v~--v~~~yp~~~P~v~~~~~~~~~~~e~~~~ 89 (289)
||+||++++++++++|+.+.+.+++|+.+|++.|.||++|+|+||.|++. ++.+||++||+++|.+.++||++..+|.
T Consensus 1 Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~v~f~t~i~HPni~~~G~ 80 (140)
T PF00179_consen 1 RLQKELKELQKNPPPGISVQPSEDDNLFEWHVTIFGPPGTPYEGGIFKFRISFPPDYPFSPPKVRFLTPIFHPNIDENGR 80 (140)
T ss_dssp HHHHHHHHHHHSHTTTEEEEEESTTETTEEEEEEEBETTSTTTTSEEEEEEEETTTTTTS--EEEESSS-SBTTB-TTSB
T ss_pred CHHHHHHHHhhCCCCCEEEEECCCCChheEEEEEeccCccceeccccccccccccccccccccccccccccccccccccc
Confidence 99999999999999999999766559999999999999999999987555 5899999999999999999999999999
Q ss_pred eeCccccC-ccchHH
Q psy621 90 ISAPLYTE-SWLRSF 103 (289)
Q Consensus 90 ~~~~~~~~-~Wl~~y 103 (289)
+|.+++.. .|.+++
T Consensus 81 icl~~l~~~~W~p~~ 95 (140)
T PF00179_consen 81 ICLDILNPESWSPSY 95 (140)
T ss_dssp BGHGGGTTTTC-TTS
T ss_pred chhhhhhcccCCccc
Confidence 99998864 598874
No 24
>KOG0424|consensus
Probab=99.79 E-value=4.6e-19 Score=135.44 Aligned_cols=88 Identities=28% Similarity=0.525 Sum_probs=74.0
Q ss_pred hHHHHHHHHHHHHHHhCCCCeEeeccccccccchhhhcchhhhhhhhhceeeeEEeeeccccCCCCcceEEEEEeCCCCC
Q psy621 168 NMEKEMVKELRRIAHESSLNVSVFHPYFVFFDQFELVRPTTIQSMLGGSVTMMFIRFRVKLVNDDNLFEWEVAIFGPPDT 247 (289)
Q Consensus 168 ~~~~~~~~~~r~ia~~~~~~~~~~~~~~~~~DQ~~~i~~~tiq~~~~a~~~m~~v~~~~i~~~~~~~~~w~~~i~gp~~t 247 (289)
....|+.+|-.+..++.++++++-...+. ....|+..|.|.|.||++|
T Consensus 4 ~~~~rl~eErk~wrk~hp~gf~AkP~~~~--------------------------------dg~~nl~~Wec~IPG~~~t 51 (158)
T KOG0424|consen 4 IALNRLAEERKKWRKDHPFGFYAKPVKNA--------------------------------DGTLNLMNWECGIPGKKGT 51 (158)
T ss_pred hHHHHHHHHHHHHhhcCCCceeeeccCCC--------------------------------CCcceeEEEEeecCCCCCC
Confidence 34567888888888888888776421110 1245899999999999999
Q ss_pred CCCCCEEEEEEEcCCCCCCCCCeEEEecCCcCCCCCCCCC
Q psy621 248 LYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVYEGTA 287 (289)
Q Consensus 248 ~y~~g~~~~~i~~~~~yP~~pP~v~f~t~i~hpnv~~~~~ 287 (289)
+||||.|.+++.||++||.+||+++|.++.||||||.+|.
T Consensus 52 ~wEGg~y~l~v~F~~dyP~~PPkckF~~pl~HPNVypsgt 91 (158)
T KOG0424|consen 52 PWEGGLYKLTVNFPDDYPSSPPKCKFKPPLFHPNVYPSGT 91 (158)
T ss_pred cCcCceEEEEEeCCccCCCCCCccccCCCCcCCCcCCCCc
Confidence 9999999999999999999999999999999999999875
No 25
>smart00212 UBCc Ubiquitin-conjugating enzyme E2, catalytic domain homologues. Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. This pathway functions in regulating many fundamental processes required for cell viability.TSG101 is one of several UBC homologues that lacks this active site cysteine.
Probab=99.78 E-value=6.1e-19 Score=141.71 Aligned_cols=80 Identities=44% Similarity=0.962 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHHhCCCCeEeeccccccccchhhhcchhhhhhhhhceeeeEEeeeccccCCCCcceEEEEEeCCCCCCCC
Q psy621 171 KEMVKELRRIAHESSLNVSVFHPYFVFFDQFELVRPTTIQSMLGGSVTMMFIRFRVKLVNDDNLFEWEVAIFGPPDTLYQ 250 (289)
Q Consensus 171 ~~~~~~~r~ia~~~~~~~~~~~~~~~~~DQ~~~i~~~tiq~~~~a~~~m~~v~~~~i~~~~~~~~~w~~~i~gp~~t~y~ 250 (289)
+|+++|++.+.++.+.++.++ +..++|+++|+++|.||++|||+
T Consensus 1 ~Rl~~E~~~~~~~~~~~~~v~------------------------------------~~~~~~~~~w~~~i~gp~~~~y~ 44 (145)
T smart00212 1 KRLLKELKELLKDPPPGISAY------------------------------------PVDEDNLLEWTGTIVGPPGTPYE 44 (145)
T ss_pred ChHHHHHHHHHhCCCCCeEEE------------------------------------ECCCCChheEEEEEEcCCCCCcC
Confidence 378899999988876666665 12334999999999999999999
Q ss_pred CCEEEEEEEcCCCCCCCCCeEEEecCCcCCCCCCCC
Q psy621 251 GGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVYEGT 286 (289)
Q Consensus 251 ~g~~~~~i~~~~~yP~~pP~v~f~t~i~hpnv~~~~ 286 (289)
||.|++.|.||++||++||+|+|.|+++||||+++|
T Consensus 45 g~~f~~~l~~p~~yP~~pP~v~f~~~i~Hp~i~~~G 80 (145)
T smart00212 45 GGIFKLTIEFPPDYPFKPPKVKFITKIYHPNVDSSG 80 (145)
T ss_pred CcEEEEEEECCcccCCCCCEEEEeCCceEeeECCCC
Confidence 999999999999999999999999999999999855
No 26
>cd00195 UBCc Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain. This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin protein ligase enzymes, E3. This pathway regulates many fundamental cellular processes. There are also other E2s which form thiol-ester linkages without the use of E3s as well as several UBC homologs (TSG101, Mms2, Croc-1 and similar proteins) which lack the active site cysteine essential for ubiquitination and appear to function in DNA repair pathways which were omitted from the scope of this CD.
Probab=99.77 E-value=1.4e-18 Score=138.93 Aligned_cols=92 Identities=28% Similarity=0.532 Sum_probs=84.9
Q ss_pred HHHHHHHHHhhhCCCCCeEEEecCCCCceEEEEEEeCCCCCCccCcEEEEEE--cCCCCCCCcccceeccccccceeccc
Q psy621 11 RALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAII--EGELPHWDVNVQNQIENLTKTFEASS 88 (289)
Q Consensus 11 ~Rl~kE~~~l~~~~~~g~~~~~~~~~n~~~w~~~i~gp~~t~y~g~~~~v~v--~~~yp~~~P~v~~~~~~~~~~~e~~~ 88 (289)
|||+||++++++++++|+.+.+ .++|+++|.+.+.||++++|+||.|.+.+ +++||.+||.++|.+.++||++..+|
T Consensus 2 ~Rl~~E~~~l~~~~~~~~~v~~-~~~~~~~w~~~i~g~~~t~y~g~~~~~~~~~p~~yP~~pP~v~f~~~i~HpnV~~~G 80 (141)
T cd00195 2 KRLQKELKDLKKDPPSGISAEP-VEENLLEWHGTIRGPPDTPYEGGIFKLDIEFPEDYPFKPPKVRFVTKIYHPNVDENG 80 (141)
T ss_pred chHHHHHHHHHhCCCCCeEEEE-CCCChhEEEEEEecCCCCCccCCEEEEEEECCCccCCCCCeEEEeCCcccCCCCCCC
Confidence 7999999999999999999996 66699999999999999999999876655 89999999999999999999999999
Q ss_pred eeeCccccCc-cchHH
Q psy621 89 FISAPLYTES-WLRSF 103 (289)
Q Consensus 89 ~~~~~~~~~~-Wl~~y 103 (289)
.+|.+.+... |.+++
T Consensus 81 ~icl~~l~~~~W~p~~ 96 (141)
T cd00195 81 KICLSILKTHGWSPAY 96 (141)
T ss_pred CCchhhcCCCCcCCcC
Confidence 9999998776 98885
No 27
>KOG0427|consensus
Probab=99.76 E-value=3.9e-18 Score=128.14 Aligned_cols=97 Identities=23% Similarity=0.371 Sum_probs=88.2
Q ss_pred CChHHHHHHHHHHHHhhhCCCCCeEEEecCCCCceEEEEEEeCCCCCCccCcEEEEEE--cCCCCCCCcccceeccc-cc
Q psy621 5 PTSSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAII--EGELPHWDVNVQNQIEN-LT 81 (289)
Q Consensus 5 ~~~~~~~Rl~kE~~~l~~~~~~g~~~~~~~~~n~~~w~~~i~gp~~t~y~g~~~~v~v--~~~yp~~~P~v~~~~~~-~~ 81 (289)
++..|.+||+|||.+|+.+||+|+... ..||+..|.+.+.|.++|.|+|..|.+.+ ++.||+..|+|.|.-++ .|
T Consensus 12 ls~~at~RLqKEl~e~q~~pP~G~~~~--v~dnlqqWii~v~Ga~GTLYa~e~~qLq~~F~~~YP~esPqVmF~~~~P~H 89 (161)
T KOG0427|consen 12 LSKIATNRLQKELSEWQNNPPTGFKHR--VTDNLQQWIIEVTGAPGTLYANETYQLQVEFPEHYPMESPQVMFVGPAPLH 89 (161)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCcceee--cccchheeEEEEecCCceeecCcEEEEEEecCCCCCCCCCeEEEecCCCCC
Confidence 345588999999999999999999997 45699999999999999999998887766 79999999999999884 89
Q ss_pred cceeccceeeCccccCccchHH
Q psy621 82 KTFEASSFISAPLYTESWLRSF 103 (289)
Q Consensus 82 ~~~e~~~~~~~~~~~~~Wl~~y 103 (289)
|.+.++|++|++++.++|.++.
T Consensus 90 PHiYSNGHICL~iL~d~WsPAm 111 (161)
T KOG0427|consen 90 PHIYSNGHICLDILYDSWSPAM 111 (161)
T ss_pred CceecCCeEEEEeecccCCcch
Confidence 9999999999999999999984
No 28
>KOG0424|consensus
Probab=99.76 E-value=5.7e-18 Score=129.49 Aligned_cols=99 Identities=23% Similarity=0.369 Sum_probs=90.7
Q ss_pred CChHHHHHHHHHHHHhhhCCCCCeEEEecCC----CCceEEEEEEeCCCCCCccCcEEEEEE--cCCCCCCCcccceecc
Q psy621 5 PTSSALRALSMEYKSLQEEPVEGFRVKLVND----DNLFEWEVAIFGPPDTLYQGGYFKAII--EGELPHWDVNVQNQIE 78 (289)
Q Consensus 5 ~~~~~~~Rl~kE~~~l~~~~~~g~~~~~~~~----~n~~~w~~~i~gp~~t~y~g~~~~v~v--~~~yp~~~P~v~~~~~ 78 (289)
||+.++.||+.|-+.+.++.+-|+.+.|+.. .|+..|.|.|-|+++|+||||.|.|.+ +++||.+||+++|...
T Consensus 1 ~s~~~~~rl~eErk~wrk~hp~gf~AkP~~~~dg~~nl~~Wec~IPG~~~t~wEGg~y~l~v~F~~dyP~~PPkckF~~p 80 (158)
T KOG0424|consen 1 MSGIALNRLAEERKKWRKDHPFGFYAKPVKNADGTLNLMNWECGIPGKKGTPWEGGLYKLTVNFPDDYPSSPPKCKFKPP 80 (158)
T ss_pred CcchHHHHHHHHHHHHhhcCCCceeeeccCCCCCcceeEEEEeecCCCCCCcCcCceEEEEEeCCccCCCCCCccccCCC
Confidence 5678899999999999999999999997643 379999999999999999999998776 6999999999999999
Q ss_pred ccccceeccceeeCccccCc--cchHH
Q psy621 79 NLTKTFEASSFISAPLYTES--WLRSF 103 (289)
Q Consensus 79 ~~~~~~e~~~~~~~~~~~~~--Wl~~y 103 (289)
.+|||+..+|.+|++++.+. |.++.
T Consensus 81 l~HPNVypsgtVcLsiL~e~~~W~pai 107 (158)
T KOG0424|consen 81 LFHPNVYPSGTVCLSILNEEKDWRPAI 107 (158)
T ss_pred CcCCCcCCCCcEehhhhccccCCCchh
Confidence 99999999999999999776 98874
No 29
>KOG0894|consensus
Probab=99.75 E-value=2.2e-18 Score=140.41 Aligned_cols=96 Identities=28% Similarity=0.559 Sum_probs=86.6
Q ss_pred CChHHHHHHHHHHHHhhhCCCCCeEEEecCCCCceEEEEEEeCCCCCCccCcEE--EEEEcCCCCCCCcccceecccccc
Q psy621 5 PTSSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYF--KAIIEGELPHWDVNVQNQIENLTK 82 (289)
Q Consensus 5 ~~~~~~~Rl~kE~~~l~~~~~~g~~~~~~~~~n~~~w~~~i~gp~~t~y~g~~~--~v~v~~~yp~~~P~v~~~~~~~~~ 82 (289)
++.+|.|||+|||+.|+++|.+++.++| .++|+.+||.++.||+||||+||.| +|.++.+||++||.++..+.. .
T Consensus 2 a~k~a~kRl~keY~~l~k~Pv~~i~A~P-~p~nILEWHYvl~GpedTPy~GG~YhGkl~FP~eyP~KPPaI~MiTPN--G 78 (244)
T KOG0894|consen 2 ASKAAVKRLQKEYRALCKDPVPYIVARP-NPNNILEWHYVLRGPEDTPYYGGYYHGKLIFPPEYPFKPPAITMITPN--G 78 (244)
T ss_pred cchHHHHHHHHHHHHHHhCCchhhccCC-CccceeeeEEEeeCCCCCCccCceeeeEEeCCCCCCCCCCeeEEECCC--C
Confidence 3788999999999999999999999996 8889999999999999999999988 677799999999999977765 3
Q ss_pred ceeccceeeCccc---cCccchHH
Q psy621 83 TFEASSFISAPLY---TESWLRSF 103 (289)
Q Consensus 83 ~~e~~~~~~~~~~---~~~Wl~~y 103 (289)
+|..+...|++++ .++|-+.+
T Consensus 79 RFktntRLCLSiSDfHPdsWNP~W 102 (244)
T KOG0894|consen 79 RFKTNTRLCLSISDFHPDSWNPGW 102 (244)
T ss_pred ceecCceEEEeccccCcCcCCCcc
Confidence 7889999999998 57887774
No 30
>TIGR00917 2A060601 Niemann-Pick C type protein family. The model describes Niemann-Pick C type protein in eukaryotes. The defective protein has been associated with Niemann-Pick disease which is described in humans as autosomal recessive lipidosis. It is characterized by the lysosomal accumulation of unestrified cholesterol. It is an integral membrane protein, which indicates that this protein is most likely involved in cholesterol transport or acts as some component of cholesterol homeostasis.
Probab=99.75 E-value=1.4e-18 Score=179.35 Aligned_cols=169 Identities=17% Similarity=0.320 Sum_probs=140.2
Q ss_pred EEEEEEcCCCCCCCcccceec--------cccccceeccceeeCccccCccchHHHHHhhhccc----------ccc---
Q psy621 57 YFKAIIEGELPHWDVNVQNQI--------ENLTKTFEASSFISAPLYTESWLRSFVSYVRRNQD----------FLN--- 115 (289)
Q Consensus 57 ~~~v~v~~~yp~~~P~v~~~~--------~~~~~~~e~~~~~~~~~~~~~Wl~~y~~~l~~~~~----------~~n--- 115 (289)
.+.+++..+++++.++.+.++ ..++..+++..++.++ +.+|+++|.+|+++.+. ..+
T Consensus 853 pvy~Vv~~~~dy~~~~~q~~lc~~~~c~~~sl~~~~~~~~~i~~~--~~sWlddf~~wl~~~~~cc~~~~~~~~~c~~~~ 930 (1204)
T TIGR00917 853 PVYFVLKGDYNYTDSESQNKVCTGGGCNKDSIVNVFNNLTYIAKP--ASSWLDDYFDWASPQSSCCCRKFTNGTFCNGPD 930 (1204)
T ss_pred cEEEEEcCCCCCCCHHHHHHHhcccCCcHHHHHHhhcccchhcCC--chHHHHHHHHHhCccccceeecCCCCCcCCCcc
Confidence 456777889999999877766 5677788888887644 79999999999986311 000
Q ss_pred ----------c---CCCchhhHHHHhHHhhccCCC---------CCccceEEcCC-CCeEEEEEEEEEEEecCCchHHHH
Q psy621 116 ----------V---TIDTREGFLKTLNDLWLFKPN---------PFSLDIKFNDD-GTKIIASRFMIQAVNITDGNMEKE 172 (289)
Q Consensus 116 ----------~---~~~~~~~F~~~l~~~~~~~~~---------~~~~di~~~~~-~~~i~asrf~~~~~~~~~~~~~~~ 172 (289)
. ..+++++|++.|+.|+...+. +|+.+++++++ ++.|.||||+++++++.++++.++
T Consensus 931 ~~~~~c~~~~~~~~~~p~~~~F~~~l~~fl~~~~~~~c~~gg~~~y~~~v~~~~~~~~~I~aS~f~~~h~~l~~~~d~i~ 1010 (1204)
T TIGR00917 931 PSCFRCADLSSNAQGRPSTTQFKEYLPFFLNDNPSADCAKGGHAAYSSAVDLQGHANTIIQASYFMTYHTPLNTQADFIN 1010 (1204)
T ss_pred ccccccccccccccCCCCHHHHHHHHHHHhcCCCccccccccccccccceEeecCCCceEEEEEEEEeccCCCCHHHHHH
Confidence 0 123467899999997776552 58899998754 346999999999999999999999
Q ss_pred HHHHHHHHHHh----CCCCeEeeccccccccchhhhcchhhhhhhhhceeeeEEeeecc
Q psy621 173 MVKELRRIAHE----SSLNVSVFHPYFVFFDQFELVRPTTIQSMLGGSVTMMFIRFRVK 227 (289)
Q Consensus 173 ~~~~~r~ia~~----~~~~~~~~~~~~~~~DQ~~~i~~~tiq~~~~a~~~m~~v~~~~i 227 (289)
+++++|+||++ .++++++|+++|+|+|||++|++++++++++|+++|++|+++|+
T Consensus 1011 a~~~~R~ia~~i~~~~~~~vfpys~~~vf~eQY~~i~~~~~~~l~~a~~~v~~V~~l~l 1069 (1204)
T TIGR00917 1011 ALRAAREISANVTRSLKMEVFPYSVFYVFFEQYLTIWSDALINLGISLGAIFIVTLVLL 1069 (1204)
T ss_pred HHHHHHHHHHHhhhccCCccccCcCceehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999995 46899999999999999999999999999999999999999997
No 31
>KOG0422|consensus
Probab=99.72 E-value=1.2e-17 Score=127.18 Aligned_cols=57 Identities=40% Similarity=0.944 Sum_probs=54.3
Q ss_pred cCCCCcceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEecCCcCCCCCCCC
Q psy621 229 VNDDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVYEGT 286 (289)
Q Consensus 229 ~~~~~~~~w~~~i~gp~~t~y~~g~~~~~i~~~~~yP~~pP~v~f~t~i~hpnv~~~~ 286 (289)
.+++|++.|++.|. |++-||..|.|+++|.||.+||++||++.|.|+||||||++.|
T Consensus 27 ~~e~nll~wt~lli-pd~ppY~kgaF~l~I~fp~eYPFKPP~i~f~tkiYHpNVDe~g 83 (153)
T KOG0422|consen 27 VDEANLLKWTGLLI-PDKPPYNKGAFRLEIDFPVEYPFKPPKIKFKTKIYHPNVDEKG 83 (153)
T ss_pred cccccceeEEeEec-CCCCCccCcceEEEeeCCCCCCCCCCeeeeeeeeccCCCCCCC
Confidence 57889999999996 8999999999999999999999999999999999999999984
No 32
>smart00212 UBCc Ubiquitin-conjugating enzyme E2, catalytic domain homologues. Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. This pathway functions in regulating many fundamental processes required for cell viability.TSG101 is one of several UBC homologues that lacks this active site cysteine.
Probab=99.71 E-value=4.2e-17 Score=131.04 Aligned_cols=93 Identities=31% Similarity=0.518 Sum_probs=85.0
Q ss_pred HHHHHHHHHhhhCCCCCeEEEecCCCCceEEEEEEeCCCCCCccCcEEEEEE--cCCCCCCCcccceeccccccceeccc
Q psy621 11 RALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAII--EGELPHWDVNVQNQIENLTKTFEASS 88 (289)
Q Consensus 11 ~Rl~kE~~~l~~~~~~g~~~~~~~~~n~~~w~~~i~gp~~t~y~g~~~~v~v--~~~yp~~~P~v~~~~~~~~~~~e~~~ 88 (289)
+||++|++++++++++|+.+.+..++|+++|++.+.||++++|+||.|.+.+ +++||.++|.+++.+.++||++..+|
T Consensus 1 ~Rl~~E~~~~~~~~~~~~~v~~~~~~~~~~w~~~i~gp~~~~y~g~~f~~~l~~p~~yP~~pP~v~f~~~i~Hp~i~~~G 80 (145)
T smart00212 1 KRLLKELKELLKDPPPGISAYPVDEDNLLEWTGTIVGPPGTPYEGGIFKLTIEFPPDYPFKPPKVKFITKIYHPNVDSSG 80 (145)
T ss_pred ChHHHHHHHHHhCCCCCeEEEECCCCChheEEEEEEcCCCCCcCCcEEEEEEECCcccCCCCCEEEEeCCceEeeECCCC
Confidence 5999999999999999999987655699999999999999999999876655 89999999999999999999999999
Q ss_pred eeeCcccc-CccchHH
Q psy621 89 FISAPLYT-ESWLRSF 103 (289)
Q Consensus 89 ~~~~~~~~-~~Wl~~y 103 (289)
.+|.+.+. +.|.+++
T Consensus 81 ~icl~~l~~~~W~p~~ 96 (145)
T smart00212 81 EICLDILKQEKWSPAT 96 (145)
T ss_pred CEehhhcCCCCCCCCC
Confidence 99999987 7898774
No 33
>KOG0416|consensus
Probab=99.70 E-value=1.7e-17 Score=130.40 Aligned_cols=58 Identities=36% Similarity=0.842 Sum_probs=55.4
Q ss_pred CCCCcceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEecCCcCCCCCCCCC
Q psy621 230 NDDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVYEGTA 287 (289)
Q Consensus 230 ~~~~~~~w~~~i~gp~~t~y~~g~~~~~i~~~~~yP~~pP~v~f~t~i~hpnv~~~~~ 287 (289)
..+++.++++.+.||.+|||+||+|++++.+|++||++.|.|.|.|+||||||+..+|
T Consensus 25 ind~m~ef~V~f~GP~ds~YegGvWkv~V~lPd~YP~KSPSIGFvnKIfHPNIDe~SG 82 (189)
T KOG0416|consen 25 INDGMQEFYVKFHGPKDSPYEGGVWKVRVELPDNYPFKSPSIGFVNKIFHPNIDEASG 82 (189)
T ss_pred ecCcccEEEEEeeCCCCCcccCceEEEEEECCCCCCCCCCcccceeeccCCCchhccC
Confidence 4567999999999999999999999999999999999999999999999999999877
No 34
>KOG0422|consensus
Probab=99.68 E-value=8.7e-17 Score=122.41 Aligned_cols=125 Identities=21% Similarity=0.345 Sum_probs=99.3
Q ss_pred HHHHHHHHHHHHhhhCCCCCeEEEecCCCCceEEEEEEeCCCCCCccCcEEEEEE--cCCCCCCCcccceecccccccee
Q psy621 8 SALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAII--EGELPHWDVNVQNQIENLTKTFE 85 (289)
Q Consensus 8 ~~~~Rl~kE~~~l~~~~~~g~~~~~~~~~n~~~w~~~i~gp~~t~y~g~~~~v~v--~~~yp~~~P~v~~~~~~~~~~~e 85 (289)
.|.+||+|||.+|++++...+.-...+++|++.|++.+. |++-||..|.|++.| +-+||++||.+.|.++++|||++
T Consensus 2 ~a~~Rl~kEL~dl~~~~~~~~rn~~~~e~nll~wt~lli-pd~ppY~kgaF~l~I~fp~eYPFKPP~i~f~tkiYHpNVD 80 (153)
T KOG0422|consen 2 AAPRRLRKELADLQKNKMKFFRNIEVDEANLLKWTGLLI-PDKPPYNKGAFRLEIDFPVEYPFKPPKIKFKTKIYHPNVD 80 (153)
T ss_pred chhHHHHHHHHHHHhccHHHHhhhhcccccceeEEeEec-CCCCCccCcceEEEeeCCCCCCCCCCeeeeeeeeccCCCC
Confidence 468999999999999998877544468889999999988 889999999987766 78999999999999999999999
Q ss_pred ccceeeCccc-cCccchHH------HHHhhhc-----ccccccC-----CCchhhHHHHhHHhhc
Q psy621 86 ASSFISAPLY-TESWLRSF------VSYVRRN-----QDFLNVT-----IDTREGFLKTLNDLWL 133 (289)
Q Consensus 86 ~~~~~~~~~~-~~~Wl~~y------~~~l~~~-----~~~~n~~-----~~~~~~F~~~l~~~~~ 133 (289)
..|.+|+.+. ++.|.++- +.++..- +.+.+++ ..+...|.+++.+|-.
T Consensus 81 e~gqvClPiis~EnWkP~T~teqVlqaLi~liN~P~pe~plr~dlA~ey~~d~~kF~K~Aee~tk 145 (153)
T KOG0422|consen 81 EKGQVCLPIISAENWKPATRTEQVLQALIALINDPEPEHPLRIDLAEEYIKDPKKFVKNAEEFTK 145 (153)
T ss_pred CCCceeeeeeecccccCcccHHHHHHHHHHHhcCCCccccchhhHHHHHHHCHHHHHHhHHHHHH
Confidence 9999999985 68998872 2222211 2223332 3677778888877543
No 35
>KOG0894|consensus
Probab=99.68 E-value=1.6e-16 Score=129.60 Aligned_cols=74 Identities=32% Similarity=0.707 Sum_probs=66.8
Q ss_pred CchHHHHHHHHHHHHHHhCCCCeEeeccccccccchhhhcchhhhhhhhhceeeeEEeeeccccCCCCcceEEEEEeCCC
Q psy621 166 DGNMEKEMVKELRRIAHESSLNVSVFHPYFVFFDQFELVRPTTIQSMLGGSVTMMFIRFRVKLVNDDNLFEWEVAIFGPP 245 (289)
Q Consensus 166 ~~~~~~~~~~~~r~ia~~~~~~~~~~~~~~~~~DQ~~~i~~~tiq~~~~a~~~m~~v~~~~i~~~~~~~~~w~~~i~gp~ 245 (289)
+....+|+++|.|.+++++-..+.+- |+++|+.+||.+|.||+
T Consensus 3 ~k~a~kRl~keY~~l~k~Pv~~i~A~-------------------------------------P~p~nILEWHYvl~Gpe 45 (244)
T KOG0894|consen 3 SKAAVKRLQKEYRALCKDPVPYIVAR-------------------------------------PNPNNILEWHYVLRGPE 45 (244)
T ss_pred chHHHHHHHHHHHHHHhCCchhhccC-------------------------------------CCccceeeeEEEeeCCC
Confidence 45677999999999999965454443 89999999999999999
Q ss_pred CCCCCCCEEEEEEEcCCCCCCCCCeEEEecC
Q psy621 246 DTLYQGGYFKAHMKFPIDYPYSPPTIRFLTK 276 (289)
Q Consensus 246 ~t~y~~g~~~~~i~~~~~yP~~pP~v~f~t~ 276 (289)
+|||+||.|++++.||++||++||.|+++|+
T Consensus 46 dTPy~GG~YhGkl~FP~eyP~KPPaI~MiTP 76 (244)
T KOG0894|consen 46 DTPYYGGYYHGKLIFPPEYPFKPPAITMITP 76 (244)
T ss_pred CCCccCceeeeEEeCCCCCCCCCCeeEEECC
Confidence 9999999999999999999999999999987
No 36
>KOG0423|consensus
Probab=99.65 E-value=8.3e-17 Score=126.56 Aligned_cols=82 Identities=34% Similarity=0.631 Sum_probs=75.8
Q ss_pred hHHHHHHHHHHHHHHhCCCCeEeeccccccccchhhhcchhhhhhhhhceeeeEEeeeccccCCCCcceEEEEEeCCCCC
Q psy621 168 NMEKEMVKELRRIAHESSLNVSVFHPYFVFFDQFELVRPTTIQSMLGGSVTMMFIRFRVKLVNDDNLFEWEVAIFGPPDT 247 (289)
Q Consensus 168 ~~~~~~~~~~r~ia~~~~~~~~~~~~~~~~~DQ~~~i~~~tiq~~~~a~~~m~~v~~~~i~~~~~~~~~w~~~i~gp~~t 247 (289)
+-.+.+++|++.+-..++-++.|+ ++++|+...++.|.||.||
T Consensus 10 ~vik~~~kEl~~l~~~PPdGIKV~-------------------------------------~NeeD~tdiqa~IeGP~GT 52 (223)
T KOG0423|consen 10 NVIKQLAKELKSLDESPPDGIKVV-------------------------------------VNEEDFTDIQADIEGPVGT 52 (223)
T ss_pred HHHHHHHHHHHhcccCCCCceEEe-------------------------------------cChHHhHHHHhhccCCCCC
Confidence 345678999999988888888887 7999999999999999999
Q ss_pred CCCCCEEEEEEEcCCCCCCCCCeEEEecCCcCCCCCCCC
Q psy621 248 LYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVYEGT 286 (289)
Q Consensus 248 ~y~~g~~~~~i~~~~~yP~~pP~v~f~t~i~hpnv~~~~ 286 (289)
||++|+|+..+.+..|||.+||+-.|+|+||||||..+|
T Consensus 53 PYa~GlFRmKL~L~kDFP~sPPKgYFlTKIFHPNVaaNG 91 (223)
T KOG0423|consen 53 PYANGLFRMKLALSKDFPHSPPKGYFLTKIFHPNVAANG 91 (223)
T ss_pred ccccceeeehhhhcCCCCCCCCcceeeeeeccCCcccCc
Confidence 999999999999999999999999999999999997766
No 37
>KOG0416|consensus
Probab=99.61 E-value=1.3e-15 Score=119.91 Aligned_cols=125 Identities=19% Similarity=0.337 Sum_probs=100.7
Q ss_pred HHHHHHHHHHHHhhhCCCCCeEEEecCCCCceEEEEEEeCCCCCCccCcEEEEEE--cCCCCCCCcccceeccccccce-
Q psy621 8 SALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAII--EGELPHWDVNVQNQIENLTKTF- 84 (289)
Q Consensus 8 ~~~~Rl~kE~~~l~~~~~~g~~~~~~~~~n~~~w~~~i~gp~~t~y~g~~~~v~v--~~~yp~~~P~v~~~~~~~~~~~- 84 (289)
++.||+..|..+|..+. ..+.. ..+++.++.+.+.||.+++|+||.++|.| |+.||++.|++.|.++++|||+
T Consensus 3 ~~~rRid~Dv~KL~~s~---yeV~~-ind~m~ef~V~f~GP~ds~YegGvWkv~V~lPd~YP~KSPSIGFvnKIfHPNID 78 (189)
T KOG0416|consen 3 SGKRRIDTDVMKLLMSD---YEVTI-INDGMQEFYVKFHGPKDSPYEGGVWKVRVELPDNYPFKSPSIGFVNKIFHPNID 78 (189)
T ss_pred CcccchhhHHHHHHhcC---CeEEE-ecCcccEEEEEeeCCCCCcccCceEEEEEECCCCCCCCCCcccceeeccCCCch
Confidence 56799999999998764 45553 45578999999999999999999987776 8999999999999999999999
Q ss_pred eccceeeCccccCccchHH------HHHhhh-----c-ccccccC-----CCchhhHHHHhHHhhccCC
Q psy621 85 EASSFISAPLYTESWLRSF------VSYVRR-----N-QDFLNVT-----IDTREGFLKTLNDLWLFKP 136 (289)
Q Consensus 85 e~~~~~~~~~~~~~Wl~~y------~~~l~~-----~-~~~~n~~-----~~~~~~F~~~l~~~~~~~~ 136 (289)
|.+|.+|++...+-|.+.| +.||-. | .|++|.. ..+++.|...+++.-.+..
T Consensus 79 e~SGsVCLDViNQtWSp~yDL~NIfetfLPQLL~YPNp~DPLN~eAAal~l~~~~~Y~~~v~eY~~kYA 147 (189)
T KOG0416|consen 79 EASGSVCLDVINQTWSPLYDLVNIFETFLPQLLRYPNPSDPLNGEAAALYLRDPEEYEEKVKEYIKKYA 147 (189)
T ss_pred hccCccHHHHHhhhhhHHHHHHHHHHHHhHHHhcCCCCCCCcccHHHHHHhcCHHHHHHHHHHHHHHhc
Confidence 5778999999999998886 334432 2 3455543 4688888888888766543
No 38
>KOG0428|consensus
Probab=99.55 E-value=9.7e-15 Score=121.35 Aligned_cols=96 Identities=28% Similarity=0.560 Sum_probs=84.2
Q ss_pred CCChHHHHHHHHHHHHhhhCCCCCeEEEecCCCCceEEEEEEeCCCCCCccCcEE--EEEEcCCCCCCCcccceeccccc
Q psy621 4 VPTSSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYF--KAIIEGELPHWDVNVQNQIENLT 81 (289)
Q Consensus 4 ~~~~~~~~Rl~kE~~~l~~~~~~g~~~~~~~~~n~~~w~~~i~gp~~t~y~g~~~--~v~v~~~yp~~~P~v~~~~~~~~ 81 (289)
+..+++.|||+||.++|+ +|.+.+.+.+ .+||+++|+..|+||.||-|+||+| +|.+|.+||++||.+...+..
T Consensus 7 N~KnpaVkRlmkEa~El~-~Ptd~yha~p-lEdNlFEWhFtiRGp~dtdFeGGiYHGRI~lPadYPmKPPs~iLLTpN-- 82 (314)
T KOG0428|consen 7 NLKNPAVKRLMKEAAELK-DPTDHYHAQP-LEDNLFEWHFTIRGPPDTDFEGGIYHGRIVLPADYPMKPPSIILLTPN-- 82 (314)
T ss_pred cccCHHHHHHHHHHHHhc-Cchhhhhhcc-chhceeeEEEEeeCCCCCCccCceeeeeEecCCCCCCCCCeEEEEcCC--
Confidence 456789999999999999 8888888886 6779999999999999999999998 566699999999998766654
Q ss_pred cceeccceeeCccc---cCccchHH
Q psy621 82 KTFEASSFISAPLY---TESWLRSF 103 (289)
Q Consensus 82 ~~~e~~~~~~~~~~---~~~Wl~~y 103 (289)
.+||-+..+|++++ .+.|++++
T Consensus 83 GRFE~nkKiCLSISgyHPEtWqPSW 107 (314)
T KOG0428|consen 83 GRFEVNKKICLSISGYHPETWQPSW 107 (314)
T ss_pred CceeeCceEEEEecCCCccccCcch
Confidence 48999999999998 57899986
No 39
>KOG0420|consensus
Probab=99.55 E-value=7.8e-15 Score=115.83 Aligned_cols=126 Identities=24% Similarity=0.338 Sum_probs=96.5
Q ss_pred CChHHHHHHHHHHHHhhhCCCCCeEEEe-cCCCCce--EEEEEEeCCCCCCccCcE--EEEEEcCCCCCCCcccceeccc
Q psy621 5 PTSSALRALSMEYKSLQEEPVEGFRVKL-VNDDNLF--EWEVAIFGPPDTLYQGGY--FKAIIEGELPHWDVNVQNQIEN 79 (289)
Q Consensus 5 ~~~~~~~Rl~kE~~~l~~~~~~g~~~~~-~~~~n~~--~w~~~i~gp~~t~y~g~~--~~v~v~~~yp~~~P~v~~~~~~ 79 (289)
..+.|.-||++|+.++.- +++++... ...+++. +...+|. |++.+|+||. |.+.|++.||+.||+|.+.+++
T Consensus 25 ~~s~a~lrl~~di~elnL--p~t~~~s~~~~~~d~~~~~~elti~-PdEGyY~gGkf~F~~~v~~~Yp~~PPKVkCltkV 101 (184)
T KOG0420|consen 25 KVSAALLRLKKDILELNL--PPTCSLSFPDSPDDLNNLEFELTIT-PDEGYYQGGKFRFKFKVPNAYPHEPPKVKCLTKV 101 (184)
T ss_pred cccHHHHHHHhhhhhccC--CCccccccccCCcccccceEEEEEc-cCcceecCceEEEEEECCCCCCCCCCeeeeeecc
Confidence 456677888888887754 44444321 1233333 4777777 9999999996 4667789999999999999999
Q ss_pred cccceeccceeeCccccCccchH----------HHHHhhhc-ccccccCC-----CchhhHHHHhHHhhc
Q psy621 80 LTKTFEASSFISAPLYTESWLRS----------FVSYVRRN-QDFLNVTI-----DTREGFLKTLNDLWL 133 (289)
Q Consensus 80 ~~~~~e~~~~~~~~~~~~~Wl~~----------y~~~l~~~-~~~~n~~~-----~~~~~F~~~l~~~~~ 133 (289)
+|||++..|.+|++++.+.|-|. +.-|++.+ +|++|..+ .+++.|..+++....
T Consensus 102 ~HPNId~~GnVCLnILRedW~P~lnL~sIi~GL~~LF~epn~eDpLN~eAA~~l~~n~e~F~~~Vr~~m~ 171 (184)
T KOG0420|consen 102 YHPNIDLDGNVCLNILREDWRPVLNLNSIIYGLQFLFLEPNPEDPLNKEAAAVLKSNREGFENNVRRAMS 171 (184)
T ss_pred ccCCcCCcchHHHHHHHhcCccccchHHHHHHHHHHhccCCCcccccHHHHHHHHhCHHHHHHHHHHHHh
Confidence 99999999999999999999887 23455555 67777654 688889988888554
No 40
>KOG0420|consensus
Probab=99.53 E-value=1.4e-14 Score=114.35 Aligned_cols=51 Identities=43% Similarity=0.830 Sum_probs=48.5
Q ss_pred eEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEecCCcCCCCCCCCC
Q psy621 236 EWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVYEGTA 287 (289)
Q Consensus 236 ~w~~~i~gp~~t~y~~g~~~~~i~~~~~yP~~pP~v~f~t~i~hpnv~~~~~ 287 (289)
+++++|. |+++.|+||.|.|.+++|+.||++||+|+++|+||||||+.+|.
T Consensus 61 ~~elti~-PdEGyY~gGkf~F~~~v~~~Yp~~PPKVkCltkV~HPNId~~Gn 111 (184)
T KOG0420|consen 61 EFELTIT-PDEGYYQGGKFRFKFKVPNAYPHEPPKVKCLTKVYHPNIDLDGN 111 (184)
T ss_pred eEEEEEc-cCcceecCceEEEEEECCCCCCCCCCeeeeeeccccCCcCCcch
Confidence 6999886 99999999999999999999999999999999999999998874
No 41
>KOG0423|consensus
Probab=99.52 E-value=1.1e-14 Score=114.73 Aligned_cols=99 Identities=24% Similarity=0.400 Sum_probs=90.8
Q ss_pred CCChHHHHHHHHHHHHhhhCCCCCeEEEecCCCCceEEEEEEeCCCCCCccCcEEEEEE--cCCCCCCCcccceeccccc
Q psy621 4 VPTSSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAII--EGELPHWDVNVQNQIENLT 81 (289)
Q Consensus 4 ~~~~~~~~Rl~kE~~~l~~~~~~g~~~~~~~~~n~~~w~~~i~gp~~t~y~g~~~~v~v--~~~yp~~~P~v~~~~~~~~ 81 (289)
+......|.+.||+++|..+|++||.+. ++++|+....+.|.||.+|||++|.|++.+ ..++|.+||+-.|.++++|
T Consensus 6 nlpp~vik~~~kEl~~l~~~PPdGIKV~-~NeeD~tdiqa~IeGP~GTPYa~GlFRmKL~L~kDFP~sPPKgYFlTKIFH 84 (223)
T KOG0423|consen 6 NLPPNVIKQLAKELKSLDESPPDGIKVV-VNEEDFTDIQADIEGPVGTPYANGLFRMKLALSKDFPHSPPKGYFLTKIFH 84 (223)
T ss_pred CCChHHHHHHHHHHHhcccCCCCceEEe-cChHHhHHHHhhccCCCCCccccceeeehhhhcCCCCCCCCcceeeeeecc
Confidence 3445578999999999999999999998 488899999999999999999999987765 6999999999999999999
Q ss_pred cceeccceeeCccccCccchHH
Q psy621 82 KTFEASSFISAPLYTESWLRSF 103 (289)
Q Consensus 82 ~~~e~~~~~~~~~~~~~Wl~~y 103 (289)
||+..+|.+|.+.+...|.++.
T Consensus 85 PNVaaNGEICVNtLKkDW~p~L 106 (223)
T KOG0423|consen 85 PNVAANGEICVNTLKKDWNPSL 106 (223)
T ss_pred CCcccCceehhhhhhcccCccc
Confidence 9999999999999999998884
No 42
>KOG0427|consensus
Probab=99.51 E-value=6.8e-14 Score=105.35 Aligned_cols=83 Identities=25% Similarity=0.538 Sum_probs=73.5
Q ss_pred chHHHHHHHHHHHHHHhCCCCeEeeccccccccchhhhcchhhhhhhhhceeeeEEeeeccccCCCCcceEEEEEeCCCC
Q psy621 167 GNMEKEMVKELRRIAHESSLNVSVFHPYFVFFDQFELVRPTTIQSMLGGSVTMMFIRFRVKLVNDDNLFEWEVAIFGPPD 246 (289)
Q Consensus 167 ~~~~~~~~~~~r~ia~~~~~~~~~~~~~~~~~DQ~~~i~~~tiq~~~~a~~~m~~v~~~~i~~~~~~~~~w~~~i~gp~~ 246 (289)
.....|+++|+-++..+++.++.. -..+|+..|.+.+.|.+|
T Consensus 14 ~~at~RLqKEl~e~q~~pP~G~~~--------------------------------------~v~dnlqqWii~v~Ga~G 55 (161)
T KOG0427|consen 14 KIATNRLQKELSEWQNNPPTGFKH--------------------------------------RVTDNLQQWIIEVTGAPG 55 (161)
T ss_pred HHHHHHHHHHHHHHhcCCCCccee--------------------------------------ecccchheeEEEEecCCc
Confidence 345578999999998887766655 245799999999999999
Q ss_pred CCCCCCEEEEEEEcCCCCCCCCCeEEEecCC-cCCCCCCCCC
Q psy621 247 TLYQGGYFKAHMKFPIDYPYSPPTIRFLTKV-WHPNVYEGTA 287 (289)
Q Consensus 247 t~y~~g~~~~~i~~~~~yP~~pP~v~f~t~i-~hpnv~~~~~ 287 (289)
|.|+|.+|.|.++||+.||++.|+|.|..++ .||+||++|.
T Consensus 56 TLYa~e~~qLq~~F~~~YP~esPqVmF~~~~P~HPHiYSNGH 97 (161)
T KOG0427|consen 56 TLYANETYQLQVEFPEHYPMESPQVMFVGPAPLHPHIYSNGH 97 (161)
T ss_pred eeecCcEEEEEEecCCCCCCCCCeEEEecCCCCCCceecCCe
Confidence 9999999999999999999999999999998 8999999984
No 43
>TIGR00918 2A060602 The Eukaryotic (Putative) Sterol Transporter (EST) Family.
Probab=99.48 E-value=8.5e-15 Score=149.32 Aligned_cols=182 Identities=16% Similarity=0.194 Sum_probs=129.1
Q ss_pred EeCCCCCCccCcEEEEEEcCCCCCCCcccceeccccccceeccceeeCccc---cCccchHHHHHhhhcc---c-c----
Q psy621 45 IFGPPDTLYQGGYFKAIIEGELPHWDVNVQNQIENLTKTFEASSFISAPLY---TESWLRSFVSYVRRNQ---D-F---- 113 (289)
Q Consensus 45 i~gp~~t~y~g~~~~v~v~~~yp~~~P~v~~~~~~~~~~~e~~~~~~~~~~---~~~Wl~~y~~~l~~~~---~-~---- 113 (289)
++...+.+|..+...++.+.++++ |..+.++..++..|++.+++.++.. +.+||++|.+||+..+ + .
T Consensus 729 yf~~~~~yF~~~~vy~V~~~~~dy--~~~q~~l~~l~~~f~~~~~i~~~~~~~~~~~WLddf~~wL~~lq~~~d~~~~~g 806 (1145)
T TIGR00918 729 FLDAQFRYFSFYNMYAVTQGNFDY--PTQQQLLYDLHQSFSSVKYVLKEDNGQLPRMWLHYFRDWLQGLQKAFDEDWRDG 806 (1145)
T ss_pred HHHHHHHhcCcCceEEEeCCCCCc--hHHHHHHHHHHHHhccCceeecCCCCCccchHHHHHHHHHHHhhhhhhhhhhhc
Confidence 333344455443233444545666 5566678889999999999988753 5799999999988510 0 0
Q ss_pred -------cc--------------------------------c---CCCchhhHHHHhHHhhccCCCC-------------
Q psy621 114 -------LN--------------------------------V---TIDTREGFLKTLNDLWLFKPNP------------- 138 (289)
Q Consensus 114 -------~n--------------------------------~---~~~~~~~F~~~l~~~~~~~~~~------------- 138 (289)
.| + ...+.+.|++.|+.|+...+..
T Consensus 807 ~~~~~~~~n~s~~~~~~~~l~~qtg~~~~p~~~~~~~~~r~v~~~g~~~~~~F~~yL~~wl~~~~~~y~~sq~~~~p~~~ 886 (1145)
T TIGR00918 807 RITKENYRNGSDDAVLAYKLLVQTGHRDKPVDKEQLTTQRLVNADGIINPNAFYIYLSAWVSNDPVAYAASQANIYPHPP 886 (1145)
T ss_pred ccccccccCCccccchhhhhcccccccCCccccccccccccccccCCCCHHHHHHHHHHHHcCCcchhhcccccccCCcc
Confidence 00 0 0234568999999977644322
Q ss_pred -Cccc-eEEcCCCCeEEE------EEEEEEEEecCCchHHHHHHHHHHHHHHhC-CC--CeEeeccccccccchhhhcch
Q psy621 139 -FSLD-IKFNDDGTKIIA------SRFMIQAVNITDGNMEKEMVKELRRIAHES-SL--NVSVFHPYFVFFDQFELVRPT 207 (289)
Q Consensus 139 -~~~d-i~~~~~~~~i~a------srf~~~~~~~~~~~~~~~~~~~~r~ia~~~-~~--~~~~~~~~~~~~DQ~~~i~~~ 207 (289)
|..+ ..++.++..|.| +||++++++++++.+.+++++++|+|+++. .. .++.++..|+|+|||..+.+.
T Consensus 887 ~~~~~~~~~~~~~~~I~as~~i~~~~F~fy~~~L~~~~d~i~al~~~R~Ia~~~~~~~~~vf~~g~~fvf~eQy~~i~~~ 966 (1145)
T TIGR00918 887 EWLHDKNDYDPENLRIPAAEPLEYAQFPFYLNGLRETSQFVEAIEHVRAICNNYEGFGLPSYPSGYPFLFWEQYMGLRHW 966 (1145)
T ss_pred hhcccccccccccccccccccchhheeeEEEcCCCCHHHHHHHHHHHHHHHHhhhhcCceeccCCCceeHHHHHHHHHHH
Confidence 2211 122211122444 489999999999999999999999999996 34 455556799999999999999
Q ss_pred hhhhhhhhceeeeEEeeeccc
Q psy621 208 TIQSMLGGSVTMMFIRFRVKL 228 (289)
Q Consensus 208 tiq~~~~a~~~m~~v~~~~i~ 228 (289)
+++++++|++||++|++++++
T Consensus 967 ~~~~l~~al~~~fvV~~lll~ 987 (1145)
T TIGR00918 967 LLLSISVVLACTFLVCALLLL 987 (1145)
T ss_pred HHHHHHHHHHHHHHHHHHHHc
Confidence 999999999999999999987
No 44
>KOG0428|consensus
Probab=99.40 E-value=7.5e-13 Score=110.19 Aligned_cols=48 Identities=48% Similarity=0.999 Sum_probs=46.5
Q ss_pred cCCCCcceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEecC
Q psy621 229 VNDDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTK 276 (289)
Q Consensus 229 ~~~~~~~~w~~~i~gp~~t~y~~g~~~~~i~~~~~yP~~pP~v~f~t~ 276 (289)
+-++|+++|+++|.||.||-|+||+|+++|.||.+||++||.+..+|+
T Consensus 34 plEdNlFEWhFtiRGp~dtdFeGGiYHGRI~lPadYPmKPPs~iLLTp 81 (314)
T KOG0428|consen 34 PLEDNLFEWHFTIRGPPDTDFEGGIYHGRIVLPADYPMKPPSIILLTP 81 (314)
T ss_pred cchhceeeEEEEeeCCCCCCccCceeeeeEecCCCCCCCCCeEEEEcC
Confidence 679999999999999999999999999999999999999999999987
No 45
>KOG0896|consensus
Probab=98.97 E-value=1.2e-09 Score=83.33 Aligned_cols=55 Identities=33% Similarity=0.628 Sum_probs=51.6
Q ss_pred CcceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEecCCcCCCCCCCCC
Q psy621 233 NLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVYEGTA 287 (289)
Q Consensus 233 ~~~~w~~~i~gp~~t~y~~g~~~~~i~~~~~yP~~pP~v~f~t~i~hpnv~~~~~ 287 (289)
-+..|...|.||+.|+||+.+|.|+|.+-++||..||.|+|.|+|.-+-|++.+|
T Consensus 37 tl~rWtg~IiGPprT~yEnRiysLKI~Cgp~YPe~PP~vrf~tkinm~gvn~~~g 91 (138)
T KOG0896|consen 37 TLTRWTGTIIGPPRTMYENRIYSLKIECGPKYPELPPTVRFGTKINMNGVNSSNG 91 (138)
T ss_pred eEeeeccceeCCCCcccccceeeEEEecCCCCCCCCceeEEEEEeeecccccCCC
Confidence 3568999999999999999999999999999999999999999998888888776
No 46
>KOG0429|consensus
Probab=98.93 E-value=7e-09 Score=85.47 Aligned_cols=59 Identities=25% Similarity=0.507 Sum_probs=53.7
Q ss_pred cCCCCcceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCC--CCCeEEEecCCcCCCCCCCCCc
Q psy621 229 VNDDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPY--SPPTIRFLTKVWHPNVYEGTAQ 288 (289)
Q Consensus 229 ~~~~~~~~w~~~i~gp~~t~y~~g~~~~~i~~~~~yP~--~pP~v~f~t~i~hpnv~~~~~~ 288 (289)
|+-.|-+.|.++|++..| .|+||+|+|+|.+|++||. .-|+|.|.+.+|||+|...+++
T Consensus 43 PSyan~l~WFGViFvr~G-iyaggVFRFtIliPdnfPdd~dlPrvvF~q~vfHP~icp~ske 103 (258)
T KOG0429|consen 43 PSYANKLLWFGVIFVRKG-IYAGGVFRFTILIPDNFPDDSDLPRVVFEQSVFHPLICPKSKE 103 (258)
T ss_pred ccccccceEEEEEEEecc-cccCceEEEEEEcCccCCCcCCCCeEEeeccccccccCCCccc
Confidence 678899999999997765 8999999999999999995 5699999999999999988765
No 47
>KOG0895|consensus
Probab=98.85 E-value=2.3e-09 Score=106.15 Aligned_cols=89 Identities=19% Similarity=0.240 Sum_probs=78.6
Q ss_pred ChHHHHHHHHHHHHhhhCCCCCeEEEecCCCCceEEEEEEeCCCCCCccCcEEEEE--EcCCCCCCCcccceecc---cc
Q psy621 6 TSSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAI--IEGELPHWDVNVQNQIE---NL 80 (289)
Q Consensus 6 ~~~~~~Rl~kE~~~l~~~~~~g~~~~~~~~~n~~~w~~~i~gp~~t~y~g~~~~v~--v~~~yp~~~P~v~~~~~---~~ 80 (289)
+..-.+|++||++.+.++.++|+.+.+ .+..+....+.|.||.++||++|.|.+. .|..||..||.+...+. .+
T Consensus 280 s~~~skrv~ke~~llskdlpEgifvrp-~e~RMd~I~alIig~~gtPy~~glf~Fdiq~P~~yPa~pp~v~~lt~~~~R~ 358 (1101)
T KOG0895|consen 280 SKNWSKKVAKELKLLSKDLPEGIFVRP-DEGRMDLIKALIIGPDGTPYADGLFLFDIQFPDTYPAVPPHVKYLTGGGVRL 358 (1101)
T ss_pred chhhHHHHHHHhhhhcccCCCCccccc-cccccceeeeEEecCCCCCCcCCceeeEeecCCCCCCCCceeEEeeccceee
Confidence 445679999999999999999999995 7778889999999999999999976544 47999999999998876 67
Q ss_pred ccceeccceeeCccc
Q psy621 81 TKTFEASSFISAPLY 95 (289)
Q Consensus 81 ~~~~e~~~~~~~~~~ 95 (289)
.|++.++|.+|++++
T Consensus 359 nPNlYn~GKVcLslL 373 (1101)
T KOG0895|consen 359 NPNLYNDGKVCLSLL 373 (1101)
T ss_pred cCCcccCceEEeeee
Confidence 899999999999986
No 48
>KOG1933|consensus
Probab=98.81 E-value=2.9e-09 Score=108.21 Aligned_cols=170 Identities=16% Similarity=0.237 Sum_probs=126.5
Q ss_pred EEEEEcCCCCCCCcccceeccccc-----------cce-eccceeeCccccCccchHHHHHhhhcccc------------
Q psy621 58 FKAIIEGELPHWDVNVQNQIENLT-----------KTF-EASSFISAPLYTESWLRSFVSYVRRNQDF------------ 113 (289)
Q Consensus 58 ~~v~v~~~yp~~~P~v~~~~~~~~-----------~~~-e~~~~~~~~~~~~~Wl~~y~~~l~~~~~~------------ 113 (289)
...++..+++++.|..+..+-... +.. +............+|+++|..|+...+.-
T Consensus 816 vyfv~k~~~~~s~~~~Qn~iC~~~~c~~~s~~~~i~~~~~~~e~t~~s~~~~~W~ddyl~w~~~~~~cCr~~~~~g~fc~ 895 (1201)
T KOG1933|consen 816 VYFVLKGGLDLSSPKDQNLICSIAGCNDNSLRNQIASAAEAPEQTYISRPASSWLDDYLVWLSPQSSCCRLKPDPGQFCP 895 (1201)
T ss_pred EEEEecCCCCCCChhcccceecccccCCcchhhhhhhcccCCcceeeccccccccchhheeecccCCccccCCCCCCcCC
Confidence 345556788999998875332210 111 12222334444689999999999853200
Q ss_pred --------------ccc--CCCchhhHHHHhHHhhccCCC---------CCccceEEcCCCC-eEEEEEEEEEEEecCCc
Q psy621 114 --------------LNV--TIDTREGFLKTLNDLWLFKPN---------PFSLDIKFNDDGT-KIIASRFMIQAVNITDG 167 (289)
Q Consensus 114 --------------~n~--~~~~~~~F~~~l~~~~~~~~~---------~~~~di~~~~~~~-~i~asrf~~~~~~~~~~ 167 (289)
.+. ..++.++|++.|+.|....|+ .|+.+|.+..++. .|+|++|++.++++.+.
T Consensus 896 ~~~~~~~c~~c~~~~~~~~~~Ps~~~F~~~L~~fln~~p~~~C~~gg~a~y~~av~l~~~~~~~iqas~F~tyh~~l~ns 975 (1201)
T KOG1933|consen 896 PSLNDERCSPCRITSNSLSNRPSIEQFYKYLPWFLNDTPSSECAKGGHAAYSSAVSLTFTHEGGIQASYFMTYHTPLSNS 975 (1201)
T ss_pred CCcccccCCccccCCcccccCccHHHHhhhchhhccCCCCcccCCCCceeeecceEEEecCcccchhhhhhhhccccccH
Confidence 000 136678899999998777664 3778888876543 39999999999999999
Q ss_pred hHHHHHHHHHHHHHHhC-----CCCeEeeccccccccchhhhcchhhhhhhhhceeeeEEeeecc
Q psy621 168 NMEKEMVKELRRIAHES-----SLNVSVFHPYFVFFDQFELVRPTTIQSMLGGSVTMMFIRFRVK 227 (289)
Q Consensus 168 ~~~~~~~~~~r~ia~~~-----~~~~~~~~~~~~~~DQ~~~i~~~tiq~~~~a~~~m~~v~~~~i 227 (289)
.+...++++.|+++.+. ..++++|+++|+|+|||..|++.|+..+.++++..++|+.++.
T Consensus 976 ~d~~~alr~ar~~s~~i~r~~~~~~vfpys~fy~fyEqylti~~~~~~~l~i~i~~iF~v~~~~l 1040 (1201)
T KOG1933|consen 976 SDFIKALRAARKLSADITRSLKGVEVFPYSVFYSFYEQYLTIWTDTLTNLGIDIVAIFLVTSVLL 1040 (1201)
T ss_pred HHHHHHHHHhhhhhhhhhhcccccceeeeeeehhHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhh
Confidence 99999999999999983 4789999999999999999999999999998888777777643
No 49
>KOG0895|consensus
Probab=98.65 E-value=7e-08 Score=95.89 Aligned_cols=84 Identities=29% Similarity=0.534 Sum_probs=74.0
Q ss_pred CchHHHHHHHHHHHHHHhCCCCeEeeccccccccchhhhcchhhhhhhhhceeeeEEeeeccccCCCCcceEEEEEeCCC
Q psy621 166 DGNMEKEMVKELRRIAHESSLNVSVFHPYFVFFDQFELVRPTTIQSMLGGSVTMMFIRFRVKLVNDDNLFEWEVAIFGPP 245 (289)
Q Consensus 166 ~~~~~~~~~~~~r~ia~~~~~~~~~~~~~~~~~DQ~~~i~~~tiq~~~~a~~~m~~v~~~~i~~~~~~~~~w~~~i~gp~ 245 (289)
+.+..++..++|+.++++.+.++++- +.+.+++..++.|.||.
T Consensus 280 s~~~skrv~ke~~llskdlpEgifvr-------------------------------------p~e~RMd~I~alIig~~ 322 (1101)
T KOG0895|consen 280 SKNWSKKVAKELKLLSKDLPEGIFVR-------------------------------------PDEGRMDLIKALIIGPD 322 (1101)
T ss_pred chhhHHHHHHHhhhhcccCCCCcccc-------------------------------------ccccccceeeeEEecCC
Confidence 34556788899999999877665553 78889999999999999
Q ss_pred CCCCCCCEEEEEEEcCCCCCCCCCeEEEecC---CcCCCCCCCC
Q psy621 246 DTLYQGGYFKAHMKFPIDYPYSPPTIRFLTK---VWHPNVYEGT 286 (289)
Q Consensus 246 ~t~y~~g~~~~~i~~~~~yP~~pP~v~f~t~---i~hpnv~~~~ 286 (289)
+|||++|+|.+.|.||..||..||.|+++|. .++||.|.+|
T Consensus 323 gtPy~~glf~Fdiq~P~~yPa~pp~v~~lt~~~~R~nPNlYn~G 366 (1101)
T KOG0895|consen 323 GTPYADGLFLFDIQFPDTYPAVPPHVKYLTGGGVRLNPNLYNDG 366 (1101)
T ss_pred CCCCcCCceeeEeecCCCCCCCCceeEEeeccceeecCCcccCc
Confidence 9999999999999999999999999999988 4899999876
No 50
>KOG0896|consensus
Probab=98.24 E-value=2.3e-06 Score=65.51 Aligned_cols=97 Identities=24% Similarity=0.344 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHHhhhCCCCCe-EEEecCCCC--ceEEEEEEeCCCCCCccCcEEEEEEc--CCCCCCCcccceecccccc
Q psy621 8 SALRALSMEYKSLQEEPVEGF-RVKLVNDDN--LFEWEVAIFGPPDTLYQGGYFKAIIE--GELPHWDVNVQNQIENLTK 82 (289)
Q Consensus 8 ~~~~Rl~kE~~~l~~~~~~g~-~~~~~~~~n--~~~w~~~i~gp~~t~y~g~~~~v~v~--~~yp~~~P~v~~~~~~~~~ 82 (289)
+..-||.+||.+=++---+|- +-.+.+++| +.+|...|.||+.|.||+..|.|.|. ..||-.||.++|.+++-.+
T Consensus 5 Prnfrlleele~g~kg~g~~~~s~gl~d~~dmtl~rWtg~IiGPprT~yEnRiysLKI~Cgp~YPe~PP~vrf~tkinm~ 84 (138)
T KOG0896|consen 5 PRNFRLLEELEEGEKGIGDGTVSWGLEDDDDMTLTRWTGTIIGPPRTMYENRIYSLKIECGPKYPELPPTVRFGTKINMN 84 (138)
T ss_pred ccchhhhhhhccccccccCceeeccccCCCcceEeeeccceeCCCCcccccceeeEEEecCCCCCCCCceeEEEEEeeec
Confidence 345678888887766544443 334444444 56899999999999999999988884 7999999999999999888
Q ss_pred ceeccceeeCcc---ccCccchHHH
Q psy621 83 TFEASSFISAPL---YTESWLRSFV 104 (289)
Q Consensus 83 ~~e~~~~~~~~~---~~~~Wl~~y~ 104 (289)
.+...+.+.+.. .+..|.++|.
T Consensus 85 gvn~~~g~Vd~~~i~~L~~W~~~y~ 109 (138)
T KOG0896|consen 85 GVNSSNGVVDPRDITVLARWQRSYS 109 (138)
T ss_pred ccccCCCccCccccchhhcccccch
Confidence 877666544442 1567888764
No 51
>KOG0429|consensus
Probab=97.52 E-value=0.00038 Score=57.92 Aligned_cols=120 Identities=18% Similarity=0.234 Sum_probs=83.1
Q ss_pred HHHHHHHHHhhhCCCCCeEEEecCCCCceEEEEEEeCCCCCCccCcEE--EEEEcCCCC--CCCcccceeccccccceec
Q psy621 11 RALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYF--KAIIEGELP--HWDVNVQNQIENLTKTFEA 86 (289)
Q Consensus 11 ~Rl~kE~~~l~~~~~~g~~~~~~~~~n~~~w~~~i~gp~~t~y~g~~~--~v~v~~~yp--~~~P~v~~~~~~~~~~~e~ 86 (289)
--|..|+....+++.+||.+.| .-.|-+.|-.+|++- ...|.||.| .|.+|.+|| ..-|++.|....+||.+-.
T Consensus 22 y~llAEf~lV~~ekL~gIyviP-Syan~l~WFGViFvr-~GiyaggVFRFtIliPdnfPdd~dlPrvvF~q~vfHP~icp 99 (258)
T KOG0429|consen 22 YALLAEFVLVCREKLDGIYVIP-SYANKLLWFGVIFVR-KGIYAGGVFRFTILIPDNFPDDSDLPRVVFEQSVFHPLICP 99 (258)
T ss_pred HHHHHHHHHHHhccCCceEEcc-cccccceEEEEEEEe-cccccCceEEEEEEcCccCCCcCCCCeEEeeccccccccCC
Confidence 3467788888899999999997 555778999999965 457899876 455688888 5569999999999998854
Q ss_pred c-ceeeCccccCccc------hHHHHHhhhc-----ccc--------cccCCCchhhHHHHhHHhh
Q psy621 87 S-SFISAPLYTESWL------RSFVSYVRRN-----QDF--------LNVTIDTREGFLKTLNDLW 132 (289)
Q Consensus 87 ~-~~~~~~~~~~~Wl------~~y~~~l~~~-----~~~--------~n~~~~~~~~F~~~l~~~~ 132 (289)
. +.-|++-.--.|- ...+.|++.. .+. +++..+++++|.+.+++--
T Consensus 100 ~skeLdl~raf~eWRk~ehhiwqvL~ylqriF~dpd~si~kl~N~eAa~l~~k~r~ef~~rvqe~v 165 (258)
T KOG0429|consen 100 KSKELDLNRAFPEWRKEEHHIWQVLVYLQRIFYDPDVSIDKLINPEAAVLYKKHRDEFRERVQECV 165 (258)
T ss_pred CccceeHhhhhhhhhccccHHHHHHHHHHHHhcCcccchhhhcChHHHHHHHHhHHHHHHHHHHHH
Confidence 3 3445554434464 3456677642 111 2223367777877777643
No 52
>KOG1935|consensus
Probab=94.19 E-value=0.014 Score=57.94 Aligned_cols=159 Identities=16% Similarity=0.203 Sum_probs=108.9
Q ss_pred CCCcccceeccccccceeccceeeCccc---cCccchHHHHHhhhc----------c------ccccc------------
Q psy621 68 HWDVNVQNQIENLTKTFEASSFISAPLY---TESWLRSFVSYVRRN----------Q------DFLNV------------ 116 (289)
Q Consensus 68 ~~~P~v~~~~~~~~~~~e~~~~~~~~~~---~~~Wl~~y~~~l~~~----------~------~~~n~------------ 116 (289)
+.-|..+..+..+|..|.+.+++..+.. ...||--|.+||+.- + -..|.
T Consensus 709 ~dyp~qQ~ll~dyh~sf~s~k~vik~~n~~l~~~Wl~~~r~WL~~lq~~fded~a~G~~~~~~~v~n~S~d~~lA~kL~~ 788 (1143)
T KOG1935|consen 709 FDYPHQQQLLDDYHQSFGSSKYVIKNENEQLPKYWLHLFRDWLQSLQRAFDEDWAKGRFTLTSGVSNGSEDARLAYKLLC 788 (1143)
T ss_pred CCcccHHHHHHHHHHHhccCceeecCCCCCCchHHHHHHHHHHHHHHHHHHHHHhcCccccccCCCCCChHHHHHHHHHH
Confidence 5556777788899999999999887765 356887777777631 0 00010
Q ss_pred --------------------CCCchhhHHHHhHHhhccCCC--------------CCccceEEcCCCC-----eEEEEEE
Q psy621 117 --------------------TIDTREGFLKTLNDLWLFKPN--------------PFSLDIKFNDDGT-----KIIASRF 157 (289)
Q Consensus 117 --------------------~~~~~~~F~~~l~~~~~~~~~--------------~~~~di~~~~~~~-----~i~asrf 157 (289)
.+-+.+.|+..|-.|++..+- .|..+ ++..+. .+.=+-|
T Consensus 789 qtG~~~~~~~~l~k~rlVd~giInp~~FYnyLTaW~~~D~~~y~aSQa~~yP~pP~w~h~--~~~~~~iP~aePl~yaQm 866 (1143)
T KOG1935|consen 789 QTGSLDNDAGRLGKIRLVDAGIINPEAFYNYLTAWFNNDPMAYYASQASFYPTPPEWEHD--NDYAKEIPAAEPLEYAQM 866 (1143)
T ss_pred hcCCccchhHhhhhhhhhhccccCHHHHHHhhhhhcccchHHhhhhccCCCCCCcccccc--ccccccccccccchhccC
Confidence 224567799999998776331 25555 222111 1212222
Q ss_pred EEEEEecCCchHHHHHHHHHHHHHHhC-CCCeEeec--cccccccchhhhcchhhhhhhhhceeeeEEeeeccc
Q psy621 158 MIQAVNITDGNMEKEMVKELRRIAHES-SLNVSVFH--PYFVFFDQFELVRPTTIQSMLGGSVTMMFIRFRVKL 228 (289)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~r~ia~~~-~~~~~~~~--~~~~~~DQ~~~i~~~tiq~~~~a~~~m~~v~~~~i~ 228 (289)
-.....+.+..+.+++.++.|..+.+. +++..-|. +-|.|+|||..+..+.++-+.+-++|.++||-++..
T Consensus 867 PFyL~gL~dTa~Ivk~I~~iR~~c~~~~s~Gl~nyPsGiPF~FWEQYl~Lrg~l~~~IcIil~~vf~vcs~ll~ 940 (1143)
T KOG1935|consen 867 PFYLNGLTDTADIVKAIESIRASCEEYTSLGLPNYPSGIPFTFWEQYLTLRGNLLQAICIILLAVFCVCSVLLL 940 (1143)
T ss_pred chHHhhhhhHHHHHHHHHHHHHHHhhcccCCCcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 223447788889999999999999995 34544444 567799999999999999999999999888877665
No 53
>PF14461 Prok-E2_B: Prokaryotic E2 family B
Probab=93.37 E-value=0.12 Score=40.58 Aligned_cols=37 Identities=32% Similarity=0.624 Sum_probs=32.5
Q ss_pred CCCEEEEEEEcCCCCCCCCCeEEEecCC---cCCCCCCCC
Q psy621 250 QGGYFKAHMKFPIDYPYSPPTIRFLTKV---WHPNVYEGT 286 (289)
Q Consensus 250 ~~g~~~~~i~~~~~yP~~pP~v~f~t~i---~hpnv~~~~ 286 (289)
.|+.+.++|.+|++||..||.|...-+- +=|||+.+|
T Consensus 34 ~~~~~~l~l~~p~~FP~~pp~v~l~d~~~~~~~pHv~~~G 73 (133)
T PF14461_consen 34 GGGPFPLRLVFPDDFPYLPPRVYLEDPKQFPLLPHVESDG 73 (133)
T ss_pred CCeEEEEEEEECCcccCcCCEEEecCccccCccCeEcCCC
Confidence 7899999999999999999999888554 689998854
No 54
>PF05773 RWD: RWD domain; InterPro: IPR006575 The RWD eukaryotic domain is found in RING finger (IPR001841 from INTERPRO) and WD repeat (IPR001680 from INTERPRO) containing proteins and DEXDc-like helicase (IPR001410 from INTERPRO) subfamily related to the ubiquitin-conjugating enzymes domain (IPR000608 from INTERPRO). ; GO: 0005515 protein binding; PDB: 2EBM_A 2EBK_A 2DAX_A 2DAW_A 2DAY_A 2DMF_A 1UKX_A 2YZ0_A.
Probab=92.67 E-value=0.24 Score=37.04 Aligned_cols=47 Identities=21% Similarity=0.210 Sum_probs=29.9
Q ss_pred CCCcceEEEEEeC--CCCCCCCCCEEEEEEEcCCCCCCCCCeEEEecCC
Q psy621 231 DDNLFEWEVAIFG--PPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKV 277 (289)
Q Consensus 231 ~~~~~~w~~~i~g--p~~t~y~~g~~~~~i~~~~~yP~~pP~v~f~t~i 277 (289)
..+...+.+.+.+ ...+.-....+.+.+.||++||..||.|...+..
T Consensus 26 ~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~p~~YP~~~P~i~l~~~~ 74 (113)
T PF05773_consen 26 SKSPPSLEVKLDESSSSFESSSFPSVTLHFTLPPGYPESPPKISLESPK 74 (113)
T ss_dssp SSSSEEEEEEE--CEECCTTTTSEEEEEEEEE-SSTTSS--EEEEEEES
T ss_pred cCCCCceeeeecccccccccccceeEEEEEeCCCcCCCcCCEEEEEcCC
Confidence 3455566666632 2334445568999999999999999999877654
No 55
>PF05743 UEV: UEV domain; InterPro: IPR008883 The N-terminal ubiquitin E2 variant (UEV) domain is ~145 amino acid residues in length and shows significant sequence similarity to E2 ubiquitin ligases but is unable to catalyze ubiquitin transfer as it lacks the active site cysteine that forms the transient thioester bond with the C terminus of ubiquitin (Ub). Nevertheless, at least some UEVs have retained the ability to bind Ub, and appear to act either as cofactors in ubiquitylation reactions, or as ubiquitin sensors. UEV domains also frequently contain other protein recognition motifs, and may generally serve to couple protein and Ub binding functions to facilitate the formation of multiprotein complexes [, , , ]. The UEV domain consists of a twisted four-stranded antiparallel beta-sheet having a meander topology, with four alpha-helices packed against one face of the sheet. The UEV fold is generally similar to canonical E2 ligases in the hydrophobic core and 'active site' regions, but differs significantly at both its N- and C-termini [, ]. The UEV domain is found in the eukaryotic tumour susceptibility gene 101 protein (TSG101). Altered transcripts of this gene have been detected in sporadic breast cancers and many other Homo sapiens malignancies. However, the involvement of this gene in neoplastic transformation and tumourigenesis is still elusive. TSG101 is required for normal cell function of embryonic and adult tissues but this gene is not a tumour suppressor for sporadic forms of breast cancer [].; GO: 0006464 protein modification process, 0015031 protein transport; PDB: 3R3Q_A 3R42_A 1UZX_A 3OBX_A 3OBS_A 3P9H_A 2F0R_A 3P9G_A 3OBQ_A 3OBU_A ....
Probab=92.65 E-value=0.23 Score=38.37 Aligned_cols=53 Identities=25% Similarity=0.359 Sum_probs=34.7
Q ss_pred CcceEEEEEeCCCCCCCCCCEEEE--EEEcCCCCCCCCCeEEEecCC-----cCCCCCCCCCcC
Q psy621 233 NLFEWEVAIFGPPDTLYQGGYFKA--HMKFPIDYPYSPPTIRFLTKV-----WHPNVYEGTAQY 289 (289)
Q Consensus 233 ~~~~w~~~i~gp~~t~y~~g~~~~--~i~~~~~yP~~pP~v~f~t~i-----~hpnv~~~~~~~ 289 (289)
.+....++|. -.|+|..|.+ .|-+|.+||..||.|...... -+.+|+++|-.|
T Consensus 31 ~LL~L~Gtip----i~y~g~~y~iPi~Iwlp~~yP~~pP~v~v~pt~~m~I~~~~~Vd~~G~v~ 90 (121)
T PF05743_consen 31 LLLCLYGTIP----ITYKGSTYNIPICIWLPENYPYSPPIVYVRPTPSMVIKPSHHVDSNGRVY 90 (121)
T ss_dssp EEEEEEEEEE----ECCTTCCEEEEEEEEE-TTTTTSSSEEEE-GCCTECCGGCCCB-TTSBB-
T ss_pred eEEEEecCcc----cccCCcccceeEEEEEcccCCCCCCEEEEeCCCCCCcCCCCeECCCCCEe
Confidence 4556667663 3588888865 555799999999999776432 244999988543
No 56
>smart00591 RWD domain in RING finger and WD repeat containing proteins and DEXDc-like helicases subfamily related to the UBCc domain.
Probab=89.64 E-value=1.4 Score=32.56 Aligned_cols=27 Identities=30% Similarity=0.503 Sum_probs=23.0
Q ss_pred CCCEEEEEEEcCCCCCCCCCeEEEecC
Q psy621 250 QGGYFKAHMKFPIDYPYSPPTIRFLTK 276 (289)
Q Consensus 250 ~~g~~~~~i~~~~~yP~~pP~v~f~t~ 276 (289)
..-...+.+.+|++||..+|.|.+.+.
T Consensus 39 ~~~~~~l~~~~p~~YP~~~P~i~~~~~ 65 (107)
T smart00591 39 QYVSLTLQVKLPENYPDEAPPISLLNS 65 (107)
T ss_pred cceEEEEEEECCCCCCCCCCCeEEECC
Confidence 345689999999999999999998764
No 57
>PF08694 UFC1: Ubiquitin-fold modifier-conjugating enzyme 1; InterPro: IPR014806 Ubiquitin-like (UBL) post-translational modifiers are covalently linked to most, if not all, target protein(s) through an enzymatic cascade analogous to ubiquitylation, consisting of E1 (activating), E2 (conjugating), and E3 (ligating) enzymes. Ubiquitin-fold modifier 1 (Ufm1) a ubiquitin-like protein is activated by a novel E1-like enzyme, Uba5, by forming a high-energy thioester bond. Activated Ufm1 is then transferred to its cognate E2-like enzyme, Ufc1, in a similar thioester linkage. This family represents the E2-like enzyme [].; PDB: 2Z6P_A 2K07_A 2Z6O_A 3EVX_D 3KPA_A.
Probab=74.30 E-value=6.4 Score=30.99 Aligned_cols=80 Identities=18% Similarity=0.147 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHhhhCCCCCeEEEecCCCCceEEEEEEeCCCCCCccCcE----------E--EEEEcCCCCCCCcccce
Q psy621 8 SALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGY----------F--KAIIEGELPHWDVNVQN 75 (289)
Q Consensus 8 ~~~~Rl~kE~~~l~~~~~~g~~~~~~~~~n~~~w~~~i~gp~~t~y~g~~----------~--~v~v~~~yp~~~P~v~~ 75 (289)
.-..||+.||+.|-+-- ...-..++| |-..=..+++|-|.|.+ | .+.||-.||..+|.+..
T Consensus 24 ~W~~RLKEEy~aLI~Yv----~~nK~~Dnd---WF~lesn~~GT~W~GkCW~~h~l~kYEF~~eFdIP~tYP~t~pEi~l 96 (161)
T PF08694_consen 24 LWVQRLKEEYQALIKYV----ENNKENDND---WFRLESNKEGTRWFGKCWYIHNLLKYEFDLEFDIPVTYPTTAPEIAL 96 (161)
T ss_dssp HHHHHHHHHHHHHHHHH----HHHHHTT------EEEEE-TTSSEEEEEEEEEETTEEEEEEEEEE--TTTTTS----B-
T ss_pred HHHHHHHHHHHHHHHHH----HhcccccCC---eEEeccCCCCCccccEEEEEeeeeeEEEeeecCCCccCCCCCcceec
Confidence 35689999999874310 000012222 43333345666666532 2 33457899999998653
Q ss_pred -eccccccceeccceeeCcc
Q psy621 76 -QIENLTKTFEASSFISAPL 94 (289)
Q Consensus 76 -~~~~~~~~~e~~~~~~~~~ 94 (289)
.+.--.......|.+|+..
T Consensus 97 PeLdGKTaKMYRGGkIClt~ 116 (161)
T PF08694_consen 97 PELDGKTAKMYRGGKICLTD 116 (161)
T ss_dssp GGGTTT-SSBCCCCBB---T
T ss_pred cccCCchhhhhcCceEeeec
Confidence 1222223445677888765
No 58
>PF14461 Prok-E2_B: Prokaryotic E2 family B
Probab=72.02 E-value=14 Score=28.82 Aligned_cols=82 Identities=16% Similarity=0.306 Sum_probs=50.6
Q ss_pred cCcEE--EEEEcCCCCCCCcccceeccc---cccceeccceeeC---ccccCccchH--HHHHhhhcccc--cccCCCch
Q psy621 54 QGGYF--KAIIEGELPHWDVNVQNQIEN---LTKTFEASSFISA---PLYTESWLRS--FVSYVRRNQDF--LNVTIDTR 121 (289)
Q Consensus 54 ~g~~~--~v~v~~~yp~~~P~v~~~~~~---~~~~~e~~~~~~~---~~~~~~Wl~~--y~~~l~~~~~~--~n~~~~~~ 121 (289)
.++.+ .+.+++.+|..||.+.-.-.. ..|.++.+|..|. ....+.|-+. +...++..... ....-++.
T Consensus 34 ~~~~~~l~l~~p~~FP~~pp~v~l~d~~~~~~~pHv~~~G~LCl~~~~~~~D~~~P~~~~~~~l~~a~~lL~~~~~~~~~ 113 (133)
T PF14461_consen 34 GGGPFPLRLVFPDDFPYLPPRVYLEDPKQFPLLPHVESDGKLCLLDEELVLDPWDPEGIIADCLERAIRLLEDGLSGDNE 113 (133)
T ss_pred CCeEEEEEEEECCcccCcCCEEEecCccccCccCeEcCCCeEEEecCCcccCccCHHHHHHHHHHHHHHHHHHhhcCCch
Confidence 44555 556688899999998776544 6889999999999 5556667665 23333321000 01112335
Q ss_pred hhHHHHhHHhhccC
Q psy621 122 EGFLKTLNDLWLFK 135 (289)
Q Consensus 122 ~~F~~~l~~~~~~~ 135 (289)
++|.+-...+|...
T Consensus 114 ~d~~~Ef~sYW~~~ 127 (133)
T PF14461_consen 114 DDFADEFQSYWNRQ 127 (133)
T ss_pred HHHHHHHHHHHhhc
Confidence 66777666666543
No 59
>KOG0897|consensus
Probab=59.91 E-value=7.3 Score=29.43 Aligned_cols=24 Identities=21% Similarity=0.419 Sum_probs=19.2
Q ss_pred EEEEEEcCCCCCCCCCeEEEecCC
Q psy621 254 FKAHMKFPIDYPYSPPTIRFLTKV 277 (289)
Q Consensus 254 ~~~~i~~~~~yP~~pP~v~f~t~i 277 (289)
-.+.+.|+++||+.||.++-..|+
T Consensus 13 ill~~~f~~~fp~~ppf~rvv~p~ 36 (122)
T KOG0897|consen 13 ILLLDIFDDNFPFMPPFPRVVKPL 36 (122)
T ss_pred eEeeeecccCCCCCCCcceeeeec
Confidence 456778999999999999876543
No 60
>PF14462 Prok-E2_E: Prokaryotic E2 family E
Probab=58.86 E-value=17 Score=28.02 Aligned_cols=34 Identities=18% Similarity=0.345 Sum_probs=28.2
Q ss_pred CCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEecC
Q psy621 243 GPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTK 276 (289)
Q Consensus 243 gp~~t~y~~g~~~~~i~~~~~yP~~pP~v~f~t~ 276 (289)
+.+...|....-.+-|.+|..||..+|-+-+..+
T Consensus 33 ~LP~G~y~~~~~dili~iP~gYP~~~~DmfY~~P 66 (122)
T PF14462_consen 33 PLPEGKYNHNEVDILILIPPGYPDAPLDMFYVYP 66 (122)
T ss_pred cCCCCccCccceEEEEECCCCCCCCCCCcEEECC
Confidence 3455669999999999999999999988777654
No 61
>smart00340 HALZ homeobox associated leucin zipper.
Probab=55.94 E-value=10 Score=23.19 Aligned_cols=15 Identities=27% Similarity=0.242 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHhhhC
Q psy621 9 ALRALSMEYKSLQEE 23 (289)
Q Consensus 9 ~~~Rl~kE~~~l~~~ 23 (289)
-.+||+||+++|..-
T Consensus 20 eNrRL~ke~~eLral 34 (44)
T smart00340 20 ENRRLQKEVQELRAL 34 (44)
T ss_pred HHHHHHHHHHHHHhc
Confidence 468999999999864
No 62
>KOG2391|consensus
Probab=55.85 E-value=8.6 Score=34.78 Aligned_cols=52 Identities=23% Similarity=0.300 Sum_probs=36.8
Q ss_pred CcceEEEEEeCCCCCCCCCCEEEEEEE--cCCCCCCCCCeEEEecC-----CcCCCCCCCCCc
Q psy621 233 NLFEWEVAIFGPPDTLYQGGYFKAHMK--FPIDYPYSPPTIRFLTK-----VWHPNVYEGTAQ 288 (289)
Q Consensus 233 ~~~~w~~~i~gp~~t~y~~g~~~~~i~--~~~~yP~~pP~v~f~t~-----i~hpnv~~~~~~ 288 (289)
+++....+| -.+|.|-+|.+-|+ +.+.||..||.+.-... -.|-+|+.+|--
T Consensus 51 ~ll~~~GTI----p~~~~G~tYnIPV~iWlldtyP~~pP~c~VnPT~~M~ik~~~hVd~nG~V 109 (365)
T KOG2391|consen 51 LLLQLDGTI----PVPYQGVTYNIPVIIWLLDTYPYYPPICYVNPTSTMIIKVHEHVDPNGKV 109 (365)
T ss_pred chhhccCcc----cccccCCcccceEEEEecccCCCCCCeEEecCCchhhhHHhhccCCCCeE
Confidence 344444444 36899999988777 59999999998754311 148999988853
No 63
>PF08694 UFC1: Ubiquitin-fold modifier-conjugating enzyme 1; InterPro: IPR014806 Ubiquitin-like (UBL) post-translational modifiers are covalently linked to most, if not all, target protein(s) through an enzymatic cascade analogous to ubiquitylation, consisting of E1 (activating), E2 (conjugating), and E3 (ligating) enzymes. Ubiquitin-fold modifier 1 (Ufm1) a ubiquitin-like protein is activated by a novel E1-like enzyme, Uba5, by forming a high-energy thioester bond. Activated Ufm1 is then transferred to its cognate E2-like enzyme, Ufc1, in a similar thioester linkage. This family represents the E2-like enzyme [].; PDB: 2Z6P_A 2K07_A 2Z6O_A 3EVX_D 3KPA_A.
Probab=48.94 E-value=14 Score=29.10 Aligned_cols=21 Identities=29% Similarity=0.736 Sum_probs=10.2
Q ss_pred EEEEEEcCCCCCCCCCeEEEe
Q psy621 254 FKAHMKFPIDYPYSPPTIRFL 274 (289)
Q Consensus 254 ~~~~i~~~~~yP~~pP~v~f~ 274 (289)
|.+++.+|..||..||.+..-
T Consensus 77 F~~eFdIP~tYP~t~pEi~lP 97 (161)
T PF08694_consen 77 FDLEFDIPVTYPTTAPEIALP 97 (161)
T ss_dssp EEEEEE--TTTTTS----B-G
T ss_pred EeeecCCCccCCCCCcceecc
Confidence 345566799999999998753
No 64
>cd00421 intradiol_dioxygenase Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. This family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases which are mononuclear non-heme iron enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings. The members are intradiol-cleaving enzymes which break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. Catechol 1,2-dioxygenases are mostly homodimers with one catalytic ferric ion per monomer. Protocatechuate 3,4-dioxygenases form more diverse oligomers.
Probab=41.26 E-value=38 Score=26.84 Aligned_cols=26 Identities=31% Similarity=0.549 Sum_probs=23.1
Q ss_pred CCCEEEEEEEcCCCCC-CCCCeEEEec
Q psy621 250 QGGYFKAHMKFPIDYP-YSPPTIRFLT 275 (289)
Q Consensus 250 ~~g~~~~~i~~~~~yP-~~pP~v~f~t 275 (289)
+.|.|.+.-..|-.|| ..||.|.|.-
T Consensus 64 ~~G~y~f~ti~Pg~Y~~~R~~HiH~~V 90 (146)
T cd00421 64 ADGRYRFRTIKPGPYPIGRPPHIHFKV 90 (146)
T ss_pred CCcCEEEEEEcCCCCCCCCCCEEEEEE
Confidence 3489999999999999 9999999873
No 65
>PF05743 UEV: UEV domain; InterPro: IPR008883 The N-terminal ubiquitin E2 variant (UEV) domain is ~145 amino acid residues in length and shows significant sequence similarity to E2 ubiquitin ligases but is unable to catalyze ubiquitin transfer as it lacks the active site cysteine that forms the transient thioester bond with the C terminus of ubiquitin (Ub). Nevertheless, at least some UEVs have retained the ability to bind Ub, and appear to act either as cofactors in ubiquitylation reactions, or as ubiquitin sensors. UEV domains also frequently contain other protein recognition motifs, and may generally serve to couple protein and Ub binding functions to facilitate the formation of multiprotein complexes [, , , ]. The UEV domain consists of a twisted four-stranded antiparallel beta-sheet having a meander topology, with four alpha-helices packed against one face of the sheet. The UEV fold is generally similar to canonical E2 ligases in the hydrophobic core and 'active site' regions, but differs significantly at both its N- and C-termini [, ]. The UEV domain is found in the eukaryotic tumour susceptibility gene 101 protein (TSG101). Altered transcripts of this gene have been detected in sporadic breast cancers and many other Homo sapiens malignancies. However, the involvement of this gene in neoplastic transformation and tumourigenesis is still elusive. TSG101 is required for normal cell function of embryonic and adult tissues but this gene is not a tumour suppressor for sporadic forms of breast cancer [].; GO: 0006464 protein modification process, 0015031 protein transport; PDB: 3R3Q_A 3R42_A 1UZX_A 3OBX_A 3OBS_A 3P9H_A 2F0R_A 3P9G_A 3OBQ_A 3OBU_A ....
Probab=40.14 E-value=26 Score=26.93 Aligned_cols=59 Identities=12% Similarity=0.189 Sum_probs=32.0
Q ss_pred CCceEEEEEEeCCCCCCccCcEEEE----EEcCCCCCCCcccceecccc-----ccceeccceeeCcc
Q psy621 36 DNLFEWEVAIFGPPDTLYQGGYFKA----IIEGELPHWDVNVQNQIENL-----TKTFEASSFISAPL 94 (289)
Q Consensus 36 ~n~~~w~~~i~gp~~t~y~g~~~~v----~v~~~yp~~~P~v~~~~~~~-----~~~~e~~~~~~~~~ 94 (289)
|.-..-...+.|--.-.|+|..|.+ -++..||..+|.+.-....- ...++++|.+..+.
T Consensus 26 ~G~~~~LL~L~Gtipi~y~g~~y~iPi~Iwlp~~yP~~pP~v~v~pt~~m~I~~~~~Vd~~G~v~~py 93 (121)
T PF05743_consen 26 DGSSKLLLCLYGTIPITYKGSTYNIPICIWLPENYPYSPPIVYVRPTPSMVIKPSHHVDSNGRVYLPY 93 (121)
T ss_dssp TSTEEEEEEEEEEEEECCTTCCEEEEEEEEE-TTTTTSSSEEEE-GCCTECCGGCCCB-TTSBB-SHH
T ss_pred CCChheEEEEecCcccccCCcccceeEEEEEcccCCCCCCEEEEeCCCCCCcCCCCeECCCCCEeCch
Confidence 3333444555655555577765543 34899999999876654322 22556666654443
No 66
>KOG4018|consensus
Probab=39.07 E-value=27 Score=29.54 Aligned_cols=20 Identities=25% Similarity=0.449 Sum_probs=18.6
Q ss_pred EEEEEEEcCCCCCCCCCeEE
Q psy621 253 YFKAHMKFPIDYPYSPPTIR 272 (289)
Q Consensus 253 ~~~~~i~~~~~yP~~pP~v~ 272 (289)
.+.+.+.++++||..||-+.
T Consensus 50 ~~~l~~s~tEnYPDe~Pli~ 69 (215)
T KOG4018|consen 50 SFILVFSLTENYPDEAPLIE 69 (215)
T ss_pred cEEEEEEccCCCCCCCccee
Confidence 88899999999999999993
No 67
>KOG3357|consensus
Probab=38.96 E-value=64 Score=24.97 Aligned_cols=79 Identities=20% Similarity=0.181 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHhhhCCCCCeEEEecCCCCceEEEEEEeCCCCCCccCcE----------EE--EEEcCCCCCCCcccce-
Q psy621 9 ALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGY----------FK--AIIEGELPHWDVNVQN- 75 (289)
Q Consensus 9 ~~~Rl~kE~~~l~~~~~~g~~~~~~~~~n~~~w~~~i~gp~~t~y~g~~----------~~--v~v~~~yp~~~P~v~~- 75 (289)
-.+||+.||+.|-..-.-. + ..++ +|-..-..+++|-|-|.+ |. +.||-.||-..|.+..
T Consensus 28 wvqrlkeey~sli~yvqnn---k-~~d~---dwfrlesn~egtrwfgkcwy~hnllkyefdvefdipityp~tapeialp 100 (167)
T KOG3357|consen 28 WVQRLKEEYQSLIAYVQNN---K-SNDN---DWFRLESNKEGTRWFGKCWYVHNLLKYEFDVEFDIPITYPTTAPEIALP 100 (167)
T ss_pred HHHHHHHHHHHHHHHHHhC---c-ccCC---cceEeccCccccceehhhhHhhhhhhheeeeeeccccccCCCCcccccc
Confidence 3589999999985421100 0 1222 355444567888887742 22 2346788888886532
Q ss_pred eccccccceeccceeeCcc
Q psy621 76 QIENLTKTFEASSFISAPL 94 (289)
Q Consensus 76 ~~~~~~~~~e~~~~~~~~~ 94 (289)
.+.--.......|.+|+..
T Consensus 101 eldgktakmyrggkiclt~ 119 (167)
T KOG3357|consen 101 ELDGKTAKMYRGGKICLTD 119 (167)
T ss_pred ccCchhhhhhcCceEeecc
Confidence 1111112334566677554
No 68
>cd03457 intradiol_dioxygenase_like Intradiol dioxygenase supgroup. Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. They break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. The family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases. The specific function of this subgroup is unknown.
Probab=37.52 E-value=46 Score=27.73 Aligned_cols=26 Identities=27% Similarity=0.335 Sum_probs=23.5
Q ss_pred CCCEEEEEEEcCCCCCCCCCeEEEec
Q psy621 250 QGGYFKAHMKFPIDYPYSPPTIRFLT 275 (289)
Q Consensus 250 ~~g~~~~~i~~~~~yP~~pP~v~f~t 275 (289)
+.|.|.|+-.+|--||.+||.|+|.-
T Consensus 85 ~~G~~~F~TI~PG~Y~gR~~HIH~~V 110 (188)
T cd03457 85 ADGVVTFTTIFPGWYPGRATHIHFKV 110 (188)
T ss_pred CCccEEEEEECCCCCCCCCceEEEEE
Confidence 56899999999999999999999874
No 69
>PF06113 BRE: Brain and reproductive organ-expressed protein (BRE); InterPro: IPR010358 This family consists of several eukaryotic brain and reproductive organ-expressed (BRE) proteins. BRE is a putative stress-modulating gene, found able to down-regulate TNF-alpha-induced-NF-kappaB activation upon over expression. A total of six isoforms are produced by alternative splicing predominantly at either end of the gene. Compared to normal cells, immortalised human cell lines uniformly express higher levels of BRE. Peripheral blood monocytes respond to LPS by down-regulating the expression of all the BRE isoforms. It is thought that the function of BRE and its isoforms is to regulate peroxisomal activities [].
Probab=35.33 E-value=1.1e+02 Score=27.99 Aligned_cols=43 Identities=30% Similarity=0.530 Sum_probs=36.0
Q ss_pred CcceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEe-cCCcCCC
Q psy621 233 NLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFL-TKVWHPN 281 (289)
Q Consensus 233 ~~~~w~~~i~gp~~t~y~~g~~~~~i~~~~~yP~~pP~v~f~-t~i~hpn 281 (289)
..+.++..| ||.|...+-++.|...||..||-+.|- ..-|+|.
T Consensus 52 ~~DRF~l~I------Py~~~~l~W~viFd~~~p~~pPDfiF~eD~~F~pd 95 (333)
T PF06113_consen 52 NCDRFKLLI------PYCGEYLKWDVIFDAQYPEFPPDFIFGEDDNFLPD 95 (333)
T ss_pred ccceEEEEe------eccCCEEEEEEEEcCCCCCCCCCEEeCCCcCcCCC
Confidence 456677777 799999999999999999999999997 3348885
No 70
>PF05773 RWD: RWD domain; InterPro: IPR006575 The RWD eukaryotic domain is found in RING finger (IPR001841 from INTERPRO) and WD repeat (IPR001680 from INTERPRO) containing proteins and DEXDc-like helicase (IPR001410 from INTERPRO) subfamily related to the ubiquitin-conjugating enzymes domain (IPR000608 from INTERPRO). ; GO: 0005515 protein binding; PDB: 2EBM_A 2EBK_A 2DAX_A 2DAW_A 2DAY_A 2DMF_A 1UKX_A 2YZ0_A.
Probab=34.70 E-value=1.4e+02 Score=21.68 Aligned_cols=65 Identities=11% Similarity=0.030 Sum_probs=31.4
Q ss_pred HHHHHHHHHhhhCCCCCeEEEecCCCCceEEEEEEeCC--CCCCccCcE--EEEEEcCCCCCCCcccceec
Q psy621 11 RALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGP--PDTLYQGGY--FKAIIEGELPHWDVNVQNQI 77 (289)
Q Consensus 11 ~Rl~kE~~~l~~~~~~g~~~~~~~~~n~~~w~~~i~gp--~~t~y~g~~--~~v~v~~~yp~~~P~v~~~~ 77 (289)
.+...|+..|+.-=++.+ .. ....+-..+.+.+... ..+.-.... ..+.++..||..+|.+....
T Consensus 4 e~~~~EieaL~sIy~~~~-~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~p~~YP~~~P~i~l~~ 72 (113)
T PF05773_consen 4 EQQEEEIEALQSIYPDDF-IE-IESKSPPSLEVKLDESSSSFESSSFPSVTLHFTLPPGYPESPPKISLES 72 (113)
T ss_dssp HHHHHHHHHHHHHSSSSE-SS-STSSSSEEEEEEE--CEECCTTTTSEEEEEEEEE-SSTTSS--EEEEEE
T ss_pred HHHHHHHHHHHHHcCCCc-cc-cccCCCCceeeeecccccccccccceeEEEEEeCCCcCCCcCCEEEEEc
Confidence 466788888877444433 11 1222333455555321 111112223 45566899999999876433
No 71
>KOG4164|consensus
Probab=33.84 E-value=14 Score=34.15 Aligned_cols=51 Identities=14% Similarity=0.303 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHhCCCCeEeeccccccccchhhhcchhhhhhh-hhceee
Q psy621 169 MEKEMVKELRRIAHESSLNVSVFHPYFVFFDQFELVRPTTIQSML-GGSVTM 219 (289)
Q Consensus 169 ~~~~~~~~~r~ia~~~~~~~~~~~~~~~~~DQ~~~i~~~tiq~~~-~a~~~m 219 (289)
+.+.+-+|+|++..++.+.+..-...|+||+...+..-..-||-- +|-+|+
T Consensus 381 KirSlKREMr~l~~d~~id~~TVa~AyVYFEKliLkglisK~NRKlcAGAcl 432 (497)
T KOG4164|consen 381 KIRSLKREMRELGEDCGIDVVTVAMAYVYFEKLILKGLISKQNRKLCAGACL 432 (497)
T ss_pred HHHHHHHHHHHhhhccCccceeehhHHHHHHHHHHhhhhhhhhhhHHHHHHH
Confidence 344566789999988998888888999999998877666666654 444444
No 72
>cd03459 3,4-PCD Protocatechuate 3,4-dioxygenase (3,4-PCD) catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=32.22 E-value=65 Score=26.00 Aligned_cols=25 Identities=24% Similarity=0.498 Sum_probs=22.3
Q ss_pred CCEEEEEEEcCCCCC-----CCCCeEEEec
Q psy621 251 GGYFKAHMKFPIDYP-----YSPPTIRFLT 275 (289)
Q Consensus 251 ~g~~~~~i~~~~~yP-----~~pP~v~f~t 275 (289)
.|.|.|+-.+|--|| ..||.|.|.-
T Consensus 72 ~G~~~f~Ti~Pg~Y~~p~~~~R~~HIH~~V 101 (158)
T cd03459 72 DGRYRFRTIKPGAYPWRNGAWRAPHIHVSV 101 (158)
T ss_pred CCcEEEEEECCCCcCCCCCCCcCCEEEEEE
Confidence 489999999999999 8999999873
No 73
>KOG4445|consensus
Probab=28.38 E-value=68 Score=28.73 Aligned_cols=25 Identities=20% Similarity=0.328 Sum_probs=22.5
Q ss_pred CEEEEEEEcCCCCCCCCCeEEEecC
Q psy621 252 GYFKAHMKFPIDYPYSPPTIRFLTK 276 (289)
Q Consensus 252 g~~~~~i~~~~~yP~~pP~v~f~t~ 276 (289)
-.+.+.+..+++||.+.|+|+...|
T Consensus 45 vcvtl~m~vs~gYP~esPtvtl~nP 69 (368)
T KOG4445|consen 45 VCVTLEMTVSEGYPAESPTVTLSNP 69 (368)
T ss_pred EEEEEEEecCCCCCCcCCceEecCC
Confidence 4688999999999999999998876
No 74
>PF12065 DUF3545: Protein of unknown function (DUF3545); InterPro: IPR021932 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 60 to 77 amino acids in length. This protein has two completely conserved residues (R and L) that may be functionally important.
Probab=25.21 E-value=48 Score=22.00 Aligned_cols=12 Identities=17% Similarity=0.290 Sum_probs=8.6
Q ss_pred HHHHHHHHHHhh
Q psy621 10 LRALSMEYKSLQ 21 (289)
Q Consensus 10 ~~Rl~kE~~~l~ 21 (289)
.+||.|||+++-
T Consensus 36 r~rL~kEL~d~D 47 (59)
T PF12065_consen 36 RQRLRKELQDMD 47 (59)
T ss_pred HHHHHHHHHHcc
Confidence 367888888774
No 75
>PF14457 Prok-E2_A: Prokaryotic E2 family A
Probab=25.12 E-value=63 Score=26.24 Aligned_cols=30 Identities=33% Similarity=0.558 Sum_probs=23.1
Q ss_pred EEEEcCCCCCCCCCeEEEecCCc---CCCCCCC
Q psy621 256 AHMKFPIDYPYSPPTIRFLTKVW---HPNVYEG 285 (289)
Q Consensus 256 ~~i~~~~~yP~~pP~v~f~t~i~---hpnv~~~ 285 (289)
+.|.|+.+||..+|.|.++-+.| +||++..
T Consensus 57 ~~i~~~~~~~~~~P~v~~lR~dFP~~lpH~~~~ 89 (162)
T PF14457_consen 57 VAIVFPPDSPLSAPEVPALRKDFPGNLPHQNPG 89 (162)
T ss_pred EEEEecCCCCCCCccchhhHhhCCCCCCccCCC
Confidence 56889999999999888876654 5777553
No 76
>TIGR02423 protocat_alph protocatechuate 3,4-dioxygenase, alpha subunit. This model represents the alpha chain of protocatechuate 3,4-dioxygenase. The most closely related family outside this family is that of the beta chain (TIGR02422), typically encoded in an adjacent locus. This enzyme acts in the degradation of aromatic compounds by way of p-hydroxybenzoate to succinate and acetyl-CoA.
Probab=22.25 E-value=1.2e+02 Score=25.48 Aligned_cols=25 Identities=24% Similarity=0.297 Sum_probs=21.8
Q ss_pred CCCEEEEEEEcCCCCCC-----CCCeEEEe
Q psy621 250 QGGYFKAHMKFPIDYPY-----SPPTIRFL 274 (289)
Q Consensus 250 ~~g~~~~~i~~~~~yP~-----~pP~v~f~ 274 (289)
+.|.|.++-..|-.||. .||.|.|.
T Consensus 95 ~~G~y~f~TI~Pg~Yp~~~g~~R~~HiH~~ 124 (193)
T TIGR02423 95 ESGEFTFETVKPGAVPDRDGVLQAPHINVS 124 (193)
T ss_pred CCCCEEEEEEcCCCcCCCCCCCcCCeEEEE
Confidence 34789999999999998 99998886
No 77
>KOG0309|consensus
Probab=22.11 E-value=2e+02 Score=29.43 Aligned_cols=40 Identities=23% Similarity=0.546 Sum_probs=27.2
Q ss_pred eEEEEEeCCCCCCCCC-CEEEEEEEcCCCCCCC-CCeEEEecC
Q psy621 236 EWEVAIFGPPDTLYQG-GYFKAHMKFPIDYPYS-PPTIRFLTK 276 (289)
Q Consensus 236 ~w~~~i~gp~~t~y~~-g~~~~~i~~~~~yP~~-pP~v~f~t~ 276 (289)
...+.+.||-..- .| ...++.|.||.+||.+ ||..+|..+
T Consensus 450 sctvsln~p~~~~-d~y~flrm~V~FP~nYPn~a~P~Fq~e~~ 491 (1081)
T KOG0309|consen 450 SCTVSLNCPNHRV-DDYIFLRMLVKFPANYPNNAAPSFQFENP 491 (1081)
T ss_pred eEEEEecCCCCcc-ccceeEEEEEeccccCCCCCCCceEEecC
Confidence 4555666665332 22 3457888999999996 788888743
No 78
>TIGR00257 IMPACT_YIGZ uncharacterized protein, YigZ family. This uncharacterized protein family includes YigZ, which has been crystallized, from E. coli. YigZ is homologous to the protein product of the mouse IMPACT gene. Crystallography shows a two-domain stucture, and the C-terminal domain is suggested to bind nucleic acids. The function is unknown. Note that the ortholog from E. coli was shown fused to the pepQ gene in GenBank entry X54687. This caused occasional misidentification of this protein as pepQ; this family is found in a number of species that lack pepQ.
Probab=21.67 E-value=1.9e+02 Score=24.38 Aligned_cols=41 Identities=12% Similarity=0.303 Sum_probs=32.4
Q ss_pred eEEEEEEEEEEEecCCchHHHHHHHHHHHHHHhCCCCeEee
Q psy621 151 KIIASRFMIQAVNITDGNMEKEMVKELRRIAHESSLNVSVF 191 (289)
Q Consensus 151 ~i~asrf~~~~~~~~~~~~~~~~~~~~r~ia~~~~~~~~~~ 191 (289)
+|.-|||......+.+..+.+..++++|+.-.+...++.+|
T Consensus 16 ~iKkSrFIa~~~~v~~~eea~~~i~~~k~~h~~A~H~c~Ay 56 (204)
T TIGR00257 16 EIKKSRFITYLMHTEGKDDAEKFILKIKKEHPNATHHCTAF 56 (204)
T ss_pred EEeCCEEEEEEEecCCHHHHHHHHHHHHhhccCCcceEEEE
Confidence 46789999999999999998889998887544444566666
No 79
>PF01205 UPF0029: Uncharacterized protein family UPF0029; InterPro: IPR001498 The Impact protein is a translational regulator that ensures constant high levels of translation under amino acid starvation. It acts by interacting with Gcn1/Gcn1L1, thereby preventing activation of Gcn2 protein kinases (EIF2AK1 to 4) and subsequent down-regulation of protein synthesis. It is evolutionary conserved from eukaryotes to archaea []. This entry represents the N-terminal domain of the Impact proteins.; PDB: 1VI7_A 2CVE_A.
Probab=21.09 E-value=2.3e+02 Score=21.33 Aligned_cols=38 Identities=18% Similarity=0.414 Sum_probs=29.0
Q ss_pred EEEEEEEEecCCchHHHHHHHHHHHHHHhCCCCeEeec
Q psy621 155 SRFMIQAVNITDGNMEKEMVKELRRIAHESSLNVSVFH 192 (289)
Q Consensus 155 srf~~~~~~~~~~~~~~~~~~~~r~ia~~~~~~~~~~~ 192 (289)
|+|......+.+..+...++++++.--.+...++.+|.
T Consensus 4 S~Fia~~~~v~s~~~~~~~l~~l~~~~~~AtH~~~Ayr 41 (110)
T PF01205_consen 4 SKFIAHAAPVESEEEAEEFLEELKKEHKKATHNCYAYR 41 (110)
T ss_dssp EEEEEEEEE-SCHHHHHHHHHHHHHH-TTSSEEEEEEE
T ss_pred CEEEEEEEEcCCHHHHHHHHHHHHhhCCCCcEEEEEEE
Confidence 89999999999998888899988876666555666664
No 80
>PF03176 MMPL: MMPL family; InterPro: IPR004869 Proteins of this entry are putative integral membrane proteins from bacteria. Several of the members are mycobacterial proteins. Many of the proteins contain two copies of this aligned region. The function of these proteins is not known, although it has been suggested that they may be involved in lipid transport [].; GO: 0016020 membrane
Probab=20.76 E-value=1.1e+02 Score=27.56 Aligned_cols=74 Identities=20% Similarity=0.169 Sum_probs=48.2
Q ss_pred EEEEEEEEecCCchHHHHHHHHHHHHHHhC----CCCeEeeccccccccchhhhcchhhhhhhhhceeeeEEeeeccc
Q psy621 155 SRFMIQAVNITDGNMEKEMVKELRRIAHES----SLNVSVFHPYFVFFDQFELVRPTTIQSMLGGSVTMMFIRFRVKL 228 (289)
Q Consensus 155 srf~~~~~~~~~~~~~~~~~~~~r~ia~~~----~~~~~~~~~~~~~~DQ~~~i~~~tiq~~~~a~~~m~~v~~~~i~ 228 (289)
.+..++...-....+..+..++++++.++. ...+.+.-......|....+........+++++.++++.+++..
T Consensus 88 ~~~~v~~~~~~~~~~~~~~~~~i~~~i~~~~~~~g~~v~~~G~~~~~~~~~~~~~~~~~~~~~~~l~~i~lvl~~~fR 165 (333)
T PF03176_consen 88 ALVVVQLKGDPGSQEAQEAVKAIRDIIKEAEKPPGLKVYVTGSPAIAADIQEAIQHDLLRSGLLALLLIFLVLLLVFR 165 (333)
T ss_pred EEEEEEecCCcchhhHHHHHHHHHHHHHHhhccCCcEEEEECHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhHHH
Confidence 345555442333444556778888887773 35566666667778888888877777777777777666665543
No 81
>cd03463 3,4-PCD_alpha Protocatechuate 3,4-dioxygenase (3,4-PCD) , alpha subunit. 3,4-PCD catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-subunit-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=20.29 E-value=1.4e+02 Score=24.88 Aligned_cols=24 Identities=25% Similarity=0.288 Sum_probs=20.8
Q ss_pred CCEEEEEEEcCCCCCC-----CCCeEEEe
Q psy621 251 GGYFKAHMKFPIDYPY-----SPPTIRFL 274 (289)
Q Consensus 251 ~g~~~~~i~~~~~yP~-----~pP~v~f~ 274 (289)
.|.|.++-..|--||. .||.|+|.
T Consensus 92 ~G~y~F~Ti~Pg~Y~~~~g~~R~~HIH~~ 120 (185)
T cd03463 92 DGRFSFTTVKPGAVPGRDGAGQAPHINVW 120 (185)
T ss_pred CCCEEEEEEcCCCcCCCCCCCcCCeEEEE
Confidence 3789999999999995 89998886
Done!