RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy621
(289 letters)
>3rz3_A Ubiquitin-conjugating enzyme E2 R1; ubiquitin conjugating enzyme
domain, E2 domain, ligase-ligas inhibitor complex; HET:
U94; 2.30A {Homo sapiens} PDB: 2ob4_A
Length = 183
Score = 120 bits (302), Expect = 1e-33
Identities = 45/61 (73%), Positives = 54/61 (88%)
Query: 224 FRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVY 283
FRV LV++ +L+ WEVAIFGPP+T Y+GGYFKA +KFPIDYPYSPP RFLTK+WHPN+Y
Sbjct: 27 FRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKMWHPNIY 86
Query: 284 E 284
E
Sbjct: 87 E 87
Score = 89.4 bits (222), Expect = 6e-22
Identities = 36/59 (61%), Positives = 48/59 (81%)
Query: 5 PTSSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAIIE 63
+ S+ +AL +E K LQEEPVEGFRV LV++ +L+ WEVAIFGPP+T Y+GGYFKA ++
Sbjct: 4 GSPSSQKALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLK 62
>2awf_A Ubiquitin-conjugating enzyme E2 G1; ligase, UBL conjugation
pathway, structural genomics, structural genomics
consortium SGC; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB:
1pzv_A
Length = 172
Score = 119 bits (300), Expect = 2e-33
Identities = 35/61 (57%), Positives = 48/61 (78%)
Query: 224 FRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVY 283
F L++D++L+ WEV I GPPDTLY+GG FKAH+ FP DYP PP ++F+T++WHPNV
Sbjct: 37 FSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIWHPNVD 96
Query: 284 E 284
+
Sbjct: 97 K 97
Score = 90.2 bits (224), Expect = 2e-22
Identities = 26/59 (44%), Positives = 35/59 (59%)
Query: 5 PTSSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAIIE 63
L + L + PVEGF L++D++L+ WEV I GPPDTLY+GG FKA +
Sbjct: 14 LVPRGSLLLRRQLAELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLT 72
>3h8k_A Ubiquitin-conjugating enzyme E2 G2; alpha beta, all alpha, ligase,
UBL conjugation pathway, endo reticulum, membrane,
metal-binding; 1.80A {Homo sapiens} PDB: 3fsh_A 2cyx_A
2kly_A
Length = 164
Score = 117 bits (295), Expect = 7e-33
Identities = 28/61 (45%), Positives = 40/61 (65%)
Query: 224 FRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVY 283
+N++N FEWE I GP DT ++ G F A + FP+DYP SPP +RF +++HPN+Y
Sbjct: 23 IVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPNIY 82
Query: 284 E 284
Sbjct: 83 P 83
Score = 87.8 bits (218), Expect = 1e-21
Identities = 25/57 (43%), Positives = 33/57 (57%)
Query: 7 SSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAIIE 63
+AL+ L EYK L P EG +N++N FEWE I GP DT ++ G F AI+
Sbjct: 2 GTALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILS 58
>2ucz_A UBC7, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase,
yeast; 2.93A {Saccharomyces cerevisiae} SCOP: d.20.1.1
Length = 165
Score = 117 bits (295), Expect = 1e-32
Identities = 26/61 (42%), Positives = 36/61 (59%)
Query: 224 FRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVY 283
+++N+F W+ I GPPDT Y G F A ++FP DYP SPP + F + HPN+Y
Sbjct: 24 IVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFPKDYPLSPPKLTFTPSILHPNIY 83
Query: 284 E 284
Sbjct: 84 P 84
Score = 87.8 bits (218), Expect = 2e-21
Identities = 19/58 (32%), Positives = 31/58 (53%)
Query: 6 TSSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAIIE 63
+ +A + L E + L ++ G +++N+F W+ I GPPDT Y G F A +E
Sbjct: 2 SKTAQKRLLKELQQLIKDSPPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLE 59
>1yrv_A Ubiquitin-conjugating ligase MGC351130; structural genomics
consortium, SGC, ubiquitin- conjugating enzyme; 2.18A
{Homo sapiens} SCOP: d.20.1.1
Length = 169
Score = 108 bits (271), Expect = 3e-29
Identities = 20/53 (37%), Positives = 35/53 (66%)
Query: 231 DDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVY 283
+++ EWEV I G ++++QG F+ + F +Y Y+PP ++F+T +HPNV
Sbjct: 49 SEDMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVVKFITIPFHPNVD 101
Score = 74.7 bits (184), Expect = 1e-16
Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 6 TSSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAIIE 63
A L ++ L+E +G K V +++ EWEV I G ++++QG F+ I
Sbjct: 21 HGRAYLLLHRDFCDLKENNYKGITAKPV-SEDMMEWEVEIEGLQNSVWQGLVFQLTIH 77
>2e2c_A Ubiquitin conjugating enzyme; ubiquitin conjugation, ubiquitin
carrier protein, thioester ligase; 2.00A {Spisula
solidissima} SCOP: d.20.1.1
Length = 156
Score = 106 bits (268), Expect = 8e-29
Identities = 26/55 (47%), Positives = 37/55 (67%)
Query: 230 NDDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVYE 284
+ DNLF+W + GP DT+Y+ +K ++FP DYPY PP ++F T WHPNV +
Sbjct: 34 DGDNLFKWVATLDGPKDTVYESLKYKLTLEFPSDYPYKPPVVKFTTPCWHPNVDQ 88
Score = 72.7 bits (179), Expect = 5e-16
Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Query: 5 PTSSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAIIE 63
S + L E ++L G DNLF+W + GP DT+Y+ +K +E
Sbjct: 6 ERHSVSKRLQQELRTLLMSGDPGITAFPD-GDNLFKWVATLDGPKDTVYESLKYKLTLE 63
>2aak_A UBC1, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase;
2.40A {Arabidopsis thaliana} SCOP: d.20.1.1 PDB: 1jas_A
2y4w_A 2yb6_A 2ybf_A 1q34_A 1z3d_A
Length = 152
Score = 105 bits (263), Expect = 3e-28
Identities = 26/54 (48%), Positives = 38/54 (70%)
Query: 231 DDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVYE 284
D+N+ W IFGP DT + GG FK ++F DYP PPT+RF+++++HPN+Y
Sbjct: 30 DNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVSRMFHPNIYA 83
Score = 74.2 bits (183), Expect = 1e-16
Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 6 TSSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAIIE 63
++ A + L ++K LQ++P G D+N+ W IFGP DT + GG FK ++
Sbjct: 2 STPARKRLMRDFKRLQQDPPAGISGAPQ-DNNIMLWNAVIFGPDDTPWDGGTFKLSLQ 58
>1ayz_A UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin conjugation;
2.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1
Length = 169
Score = 105 bits (264), Expect = 4e-28
Identities = 23/53 (43%), Positives = 35/53 (66%)
Query: 231 DDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVY 283
DN+ W I GP DT Y+ G F+ ++F +YP PP ++FL++++HPNVY
Sbjct: 30 PDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSEMFHPNVY 82
Score = 75.1 bits (185), Expect = 8e-17
Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 6 TSSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAIIE 63
++ A R L ++K ++E+ G + DN+ W I GP DT Y+ G F+ ++E
Sbjct: 2 STPARRRLMRDFKRMKEDAPPGVSASPL-PDNVMVWNAMIIGPADTPYEDGTFRLLLE 58
>3rcz_B SUMO-conjugating enzyme UBC9; SUMO-like domain, protein:protein
interaction, protein ligase complex; HET: DNA; 1.90A
{Schizosaccharomyces pombe}
Length = 163
Score = 105 bits (263), Expect = 5e-28
Identities = 24/54 (44%), Positives = 32/54 (59%)
Query: 230 NDDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVY 283
+L W+V I G P T ++GG +K M FP +YP PP RF ++HPNVY
Sbjct: 40 GGLDLMNWKVGIPGKPKTSWEGGLYKLTMAFPEEYPTRPPKCRFTPPLFHPNVY 93
Score = 73.9 bits (182), Expect = 2e-16
Identities = 17/62 (27%), Positives = 26/62 (41%), Gaps = 4/62 (6%)
Query: 6 TSSALRALSMEYKSLQEEPVEGFRVKLVND----DNLFEWEVAIFGPPDTLYQGGYFKAI 61
+S L E K + + GF K +L W+V I G P T ++GG +K
Sbjct: 8 SSLCKTRLQEERKQWRRDHPFGFYAKPCKSSDGGLDLMNWKVGIPGKPKTSWEGGLYKLT 67
Query: 62 IE 63
+
Sbjct: 68 MA 69
>1i7k_A Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A {Homo sapiens}
SCOP: d.20.1.1
Length = 179
Score = 105 bits (263), Expect = 7e-28
Identities = 24/54 (44%), Positives = 34/54 (62%)
Query: 231 DDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVYE 284
DNLF+W I G T+Y+ +K ++FP YPY+ PT++FLT +HPNV
Sbjct: 56 SDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPNVDT 109
Score = 71.2 bits (175), Expect = 3e-15
Identities = 15/59 (25%), Positives = 23/59 (38%), Gaps = 1/59 (1%)
Query: 5 PTSSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAIIE 63
+ L E +L +G DNLF+W I G T+Y+ +K +E
Sbjct: 27 ARGPVGKRLQQELMTLMMSGDKGISAFPE-SDNLFKWVGTIHGAAGTVYEDLRYKLSLE 84
>2grr_A Ubiquitin-conjugating enzyme E2 I; ubiquitin, conjugation, small
ubiquitin like modifer, SMT3, ligase; 1.30A {Homo
sapiens} PDB: 2grq_A 2grn_A 2pe6_A 2gro_A 2grp_A 1u9a_A
1u9b_A 2vrr_A 2px9_B 1z5s_A 2xwu_A 3uin_A 3uio_A 3uip_A*
1kps_A 2o25_C 1a3s_A 3a4s_A 2uyz_A
Length = 161
Score = 103 bits (260), Expect = 1e-27
Identities = 26/54 (48%), Positives = 31/54 (57%)
Query: 230 NDDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVY 283
NL WE AI G T ++GG FK M F DYP SPP +F ++HPNVY
Sbjct: 37 GTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVY 90
Score = 73.5 bits (181), Expect = 3e-16
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 4/62 (6%)
Query: 6 TSSALRALSMEYKSLQEEPVEGFRVKLVNDD----NLFEWEVAIFGPPDTLYQGGYFKAI 61
+ AL L+ E K+ +++ GF + NL WE AI G T ++GG FK
Sbjct: 5 SGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLR 64
Query: 62 IE 63
+
Sbjct: 65 ML 66
>2q0v_A Ubiquitin-conjugating enzyme E2, putative; malaria, structural G
structural genomics consortium, SGC, ligase; 2.40A
{Plasmodium falciparum} PDB: 3e95_C
Length = 156
Score = 103 bits (259), Expect = 1e-27
Identities = 19/63 (30%), Positives = 32/63 (50%)
Query: 221 FIRFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHP 280
+ F ++ +D L W IFG P T+++ + + +YP SPPT++F TK+
Sbjct: 41 GVSFGLESADDITLSNWSCTIFGQPGTVFENRIYSLTIFCDDNYPDSPPTVKFDTKIEMS 100
Query: 281 NVY 283
V
Sbjct: 101 CVD 103
Score = 59.7 bits (145), Expect = 3e-11
Identities = 17/66 (25%), Positives = 23/66 (34%), Gaps = 6/66 (9%)
Query: 1 MAQVPTSSALRALSMEYKSLQ-EEPVEGFRVKLVNDD--NLFEWEVAIFGPPDTLYQGGY 57
VP L E + Q EG L + D L W IFG P T+++
Sbjct: 17 QGIVP---RSFRLLDELERGQKGNVSEGVSFGLESADDITLSNWSCTIFGQPGTVFENRI 73
Query: 58 FKAIIE 63
+ I
Sbjct: 74 YSLTIF 79
>2y9m_A Ubiquitin-conjugating enzyme E2-21 kDa; ligase-transport protein
complex, ubiquitin conjugating ENZY complex, peroxisomal
protein; 2.60A {Saccharomyces cerevisiae} PDB: 2y9p_A
2y9o_A
Length = 172
Score = 103 bits (259), Expect = 2e-27
Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Query: 222 IRFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFL-TKVWHP 280
I + +++ +L +WE I GP DT Y+ F+ ++ P YP +PP I F+ + H
Sbjct: 35 IIESLNPIDETDLSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNPPKISFMQNNILHC 94
Query: 281 NVYEGT 286
NV T
Sbjct: 95 NVKSAT 100
Score = 65.9 bits (161), Expect = 2e-13
Identities = 18/69 (26%), Positives = 31/69 (44%), Gaps = 11/69 (15%)
Query: 6 TSSALRALSMEYKSLQEE---------PVEGFRVKL--VNDDNLFEWEVAIFGPPDTLYQ 54
+ + + EYK + + P G L +++ +L +WE I GP DT Y+
Sbjct: 4 ADTCMSRIVKEYKVILKTLASDDPIANPYRGIIESLNPIDETDLSKWEAIISGPSDTPYE 63
Query: 55 GGYFKAIIE 63
F+ +IE
Sbjct: 64 NHQFRILIE 72
>2h2y_A Ubiquitin-conjugating enzyme; structural genomics, unknown
function, structural genomics consortium, SGC; 2.80A
{Plasmodium falciparum 3D7}
Length = 136
Score = 102 bits (255), Expect = 3e-27
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 229 VNDDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTK-VWHPNVYE 284
V+ N+ W V G +T+Y +K + FP +YP PP + FL K H +VY
Sbjct: 44 VHPSNIRIWIVQYVGLENTIYANEVYKIKIIFPDNYPLKPPIVYFLQKPPKHTHVYS 100
Score = 73.5 bits (181), Expect = 2e-16
Identities = 12/63 (19%), Positives = 23/63 (36%), Gaps = 1/63 (1%)
Query: 1 MAQVPTSSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKA 60
+ +A + E + + P + V+ N+ W V G +T+Y +K
Sbjct: 13 KTKYNLGNANYRIQKELNNFLKNPPINCTID-VHPSNIRIWIVQYVGLENTIYANEVYKI 71
Query: 61 IIE 63
I
Sbjct: 72 KII 74
>2fo3_A Ubiquitin-conjugating enzyme; SGC, UBC, structural genomics,
structural genomics consortium, unknown function; 1.86A
{Plasmodium vivax} SCOP: d.20.1.1
Length = 125
Score = 101 bits (253), Expect = 4e-27
Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 229 VNDDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTK-VWHPNVYE 284
V+ +N+ W V G +T+Y +K + FP DYP PP + FL K H +VY
Sbjct: 30 VHPNNIRIWIVKYVGLENTIYANEVYKLKIIFPDDYPLKPPIVYFLQKPPKHTHVYS 86
Score = 72.3 bits (178), Expect = 3e-16
Identities = 11/57 (19%), Positives = 21/57 (36%), Gaps = 1/57 (1%)
Query: 7 SSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAIIE 63
+A + E + P + + +N+ W V G +T+Y +K I
Sbjct: 5 GNANYRIQKELHNFLNNPPINCTLDVH-PNNIRIWIVKYVGLENTIYANEVYKLKII 60
>1fxt_A Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NMR {Saccharomyces
cerevisiae} SCOP: d.20.1.1 PDB: 1fzy_A
Length = 149
Score = 101 bits (255), Expect = 4e-27
Identities = 22/63 (34%), Positives = 39/63 (61%)
Query: 224 FRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVY 283
++ V++ ++ + GPP T Y+GG F ++ P++YP+ PP ++F TKV+HPN+
Sbjct: 21 ITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNIS 80
Query: 284 EGT 286
T
Sbjct: 81 SVT 83
Score = 70.4 bits (173), Expect = 3e-15
Identities = 14/56 (25%), Positives = 30/56 (53%)
Query: 8 SALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAIIE 63
S + + E ++++++P ++ V++ ++ + GPP T Y+GG F IE
Sbjct: 1 SRAKRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIE 56
>2gjd_A Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT3,
crystallography, ligase; 1.75A {Saccharomyces
cerevisiae} PDB: 2eke_A 3ong_B
Length = 157
Score = 101 bits (255), Expect = 5e-27
Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Query: 224 FRVKLVNDD----NLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWH 279
F K V +L +WE I G T + GG + +++P +YP PP ++F +H
Sbjct: 24 FYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPITVEYPNEYPSKPPKVKFPAGFYH 83
Query: 280 PNVY 283
PNVY
Sbjct: 84 PNVY 87
Score = 70.0 bits (172), Expect = 4e-15
Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 4/62 (6%)
Query: 6 TSSALRALSMEYKSLQEEPVEGFRVKLVNDD----NLFEWEVAIFGPPDTLYQGGYFKAI 61
+S L+ L E K +++ GF K V +L +WE I G T + GG +
Sbjct: 2 SSLCLQRLQEERKKWRKDHPFGFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPIT 61
Query: 62 IE 63
+E
Sbjct: 62 VE 63
>2a7l_A Hypothetical ubiquitin-conjugating enzyme LOC55284; structural
genomics consortium, (SGC), ligase; 1.82A {Homo sapiens}
SCOP: d.20.1.1
Length = 136
Score = 101 bits (253), Expect = 7e-27
Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 230 NDDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTK--VWHPNVY 283
+++ +W V + G P TLY+G F+ KF YP+ P + F + HP+VY
Sbjct: 49 VQNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMFTGENIPVHPHVY 104
Score = 75.4 bits (186), Expect = 3e-17
Identities = 16/64 (25%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Query: 1 MAQVPTSSALRALSMEYKSLQEEPVEGFRVKLVN-DDNLFEWEVAIFGPPDTLYQGGYFK 59
+ + +S + L E +LQ +P G + + +++ +W V + G P TLY+G F+
Sbjct: 15 VPRGSMASMQKRLQKELLALQNDPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQ 74
Query: 60 AIIE 63
+ +
Sbjct: 75 LLFK 78
>1zdn_A Ubiquitin-conjugating enzyme E2S; structural genomics consortium,
ubiquitin-conjuga enzyme, ligase, SGC; 1.93A {Homo
sapiens} SCOP: d.20.1.1
Length = 158
Score = 101 bits (253), Expect = 1e-26
Identities = 24/54 (44%), Positives = 34/54 (62%)
Query: 230 NDDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVY 283
N+++L + +V I GP T Y GG F+ + D+P SPP FLTK++HPNV
Sbjct: 38 NEEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPKGYFLTKIFHPNVG 91
Score = 66.5 bits (163), Expect = 9e-14
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 6 TSSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAIIE 63
+R + E +L +P +G +V N+++L + +V I GP T Y GG F+ +
Sbjct: 11 PPHIIRLVYKEVTTLTADPPDGIKVFP-NEEDLTDLQVTIEGPEGTPYAGGLFRMKLL 67
>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent
degradation, ligase; NMR {Saccharomyces cerevisiae}
SCOP: a.5.2.1 d.20.1.1
Length = 215
Score = 102 bits (256), Expect = 1e-26
Identities = 22/63 (34%), Positives = 39/63 (61%)
Query: 224 FRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVY 283
++ V++ ++ + GPP T Y+GG F ++ P++YP+ PP ++F TKV+HPN+
Sbjct: 22 ITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNIS 81
Query: 284 EGT 286
T
Sbjct: 82 SVT 84
Score = 72.5 bits (178), Expect = 2e-15
Identities = 15/57 (26%), Positives = 31/57 (54%)
Query: 7 SSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAIIE 63
SS + + E ++++++P ++ V++ ++ + GPP T Y+GG F IE
Sbjct: 1 SSRAKRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIE 57
>1c4z_D UBCH7, ubiquitin conjugating enzyme E2; bilobal structure,
elongated shape, E3 ubiquitin ligase, E2 ubiquitin
conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.20.1.1
PDB: 1fbv_C* 3sy2_C 3sqv_C
Length = 154
Score = 100 bits (250), Expect = 3e-26
Identities = 25/61 (40%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Query: 224 FRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVY 283
FR V++ NL W+ I P + Y G F+ + FP +YP+ PP I F TK++HPN+
Sbjct: 22 FRNIQVDEANLLTWQGLI-VPDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNID 80
Query: 284 E 284
E
Sbjct: 81 E 81
Score = 67.7 bits (166), Expect = 3e-14
Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 8 SALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAIIE 63
+A R L E + +++ ++ FR V++ NL W+ I P + Y G F+ I
Sbjct: 2 AASRRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLI-VPDNPPYDKGAFRIEIN 56
>1z2u_A Ubiquitin-conjugating enzyme E2 2; PSI, secsg, proteosome pathway,
structural genomics, protein structure initiative; 1.10A
{Caenorhabditis elegans} SCOP: d.20.1.1 PDB: 3tgd_A
2esk_A 1ur6_A 1w4u_A 4a49_B* 4a4b_C* 4a4c_C* 3eb6_B
3l1y_A 2esp_A 2eso_A 2esq_A 3l1z_A 2oxq_A 3a33_A 4ddg_D
4ddi_D 1x23_A 3rpg_A 2fuh_A ...
Length = 150
Score = 99.6 bits (249), Expect = 4e-26
Identities = 25/53 (47%), Positives = 36/53 (67%)
Query: 231 DDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVY 283
D+LF W+ I GPP++ YQGG F + FP DYP+ PP + F T+++HPN+
Sbjct: 30 GDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNIN 82
Score = 66.1 bits (162), Expect = 1e-13
Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 6 TSSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAIIE 63
+ AL+ + E + L +P V D+LF W+ I GPP++ YQGG F I
Sbjct: 2 SHMALKRIQKELQDLGRDPPAQCSAGPV-GDDLFHWQATIMGPPESPYQGGVFFLTIH 58
>2bep_A Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2 conjugating
enzyme, protein degradatio structural proteomics in
europe, spine; 1.8A {Bos taurus} SCOP: d.20.1.1 PDB:
2bf8_A
Length = 159
Score = 99.7 bits (249), Expect = 4e-26
Identities = 27/57 (47%), Positives = 38/57 (66%)
Query: 230 NDDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVYEGT 286
D+N E I GPPDT Y+GG ++ +K P YP++PP +RF+TK+WHPN+ T
Sbjct: 36 VDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVT 92
Score = 57.7 bits (140), Expect = 2e-10
Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 6/66 (9%)
Query: 1 MAQVPTSSALRALSMEYKSLQ---EEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGY 57
MA + A++ + E+K + E +V LV D+N E I GPPDT Y+GG
Sbjct: 3 MAM--ANIAVQRIKREFKEVLKSEETSKNQIKVDLV-DENFTELRGEIAGPPDTPYEGGR 59
Query: 58 FKAIIE 63
++ I+
Sbjct: 60 YQLEIK 65
>3fn1_B NEDD8-conjugating enzyme UBE2F; ligase, ATP-binding, cell cycle,
nucleotide-binding, UBL CON pathway; 2.50A {Homo
sapiens} PDB: 2edi_A
Length = 167
Score = 100 bits (250), Expect = 4e-26
Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 224 FRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVY 283
+V + + L +++ P + YQGG F+ + P Y PP ++ LTK+WHPN+
Sbjct: 34 CKVHFPDPNKLHCFQL-TVTPDEGYYQGGKFQFETEVPDAYNMVPPKVKCLTKIWHPNIT 92
Query: 284 E 284
E
Sbjct: 93 E 93
Score = 67.4 bits (165), Expect = 6e-14
Identities = 13/63 (20%), Positives = 24/63 (38%), Gaps = 1/63 (1%)
Query: 1 MAQVPTSSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKA 60
+ S + L E L+ +V + + L +++ P + YQGG F+
Sbjct: 7 DSTRRVSVRDKLLVKEVAELEANLPCTCKVHFPDPNKLHCFQL-TVTPDEGYYQGGKFQF 65
Query: 61 IIE 63
E
Sbjct: 66 ETE 68
>2r0j_A Ubiquitin carrier protein; ubiquitin conjugating, malaria, ligas
conjugation pathway, structural genomics, structural
genomi consortium; 1.85A {Plasmodium falciparum} PDB:
3e95_A
Length = 149
Score = 99.2 bits (248), Expect = 5e-26
Identities = 22/54 (40%), Positives = 32/54 (59%)
Query: 230 NDDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVY 283
+N + + I GP T Y+GG +K + P YP PP +RFLTK++HPN+
Sbjct: 26 VPENYRHFNILINGPDGTPYEGGTYKLELFLPEQYPMEPPKVRFLTKIYHPNID 79
Score = 60.3 bits (147), Expect = 1e-11
Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Query: 13 LSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAIIE 63
++ E ++L EP G V +N + + I GP T Y+GG +K +
Sbjct: 6 ITKETQNLANEPPPGIMAVPV-PENYRHFNILINGPDGTPYEGGTYKLELF 55
>4ds2_A Ubiquitin-conjugating enzyme E2, putative; structural genomics,
PSI, protein structure initiative; 2.63A {Trypanosoma
cruzi}
Length = 167
Score = 99.8 bits (249), Expect = 5e-26
Identities = 20/59 (33%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 228 LVNDDNLFEWEVAIFGPPDTLY--QGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVYE 284
V+ D ++ W + + P D++Y G ++ + F DYP+ PPT+RF+T V+ P V
Sbjct: 43 SVDTDTIYNWILKVKAPADSVYGGAGNTYQLSVLFSDDYPHEPPTVRFVTPVYSPLVTG 101
Score = 55.9 bits (135), Expect = 6e-10
Identities = 11/71 (15%), Positives = 27/71 (38%), Gaps = 13/71 (18%)
Query: 6 TSSALRALSMEYKSLQEEPV-----------EGFRVKLVNDDNLFEWEVAIFGPPDTLY- 53
+ + + + + K L EE + V+ D ++ W + + P D++Y
Sbjct: 6 KNISNKRIIKDLKLLLEEVDANNEANSSGSPHSTAIFSVDTDTIYNWILKVKAPADSVYG 65
Query: 54 -QGGYFKAIIE 63
G ++ +
Sbjct: 66 GAGNTYQLSVL 76
>2c4o_A Ubiquitin-conjugating enzyme E2 D2; thioesterification, ligase, UBL
conjugation pathway; HET: CME; 1.94A {Homo sapiens}
SCOP: d.20.1.1 PDB: 2clw_A* 2c4p_A
Length = 165
Score = 99.7 bits (249), Expect = 6e-26
Identities = 24/53 (45%), Positives = 35/53 (66%)
Query: 231 DDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVY 283
D++F W+ I GP D+ YQGG F + FP DYP+ PP + F T+++HPN+
Sbjct: 45 GDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNIN 97
Score = 66.2 bits (162), Expect = 2e-13
Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Query: 5 PTSSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAIIE 63
S AL+ + E L +P V D++F W+ I GP D+ YQGG F I
Sbjct: 16 RGSMALKRIHKELNDLARDPPAQCSAGPV-GDDMFHWQATIMGPNDSPYQGGVFFLTIH 73
>2hlw_A Ubiquitin-conjugating enzyme E2 variant 1; ubiquitin-conjugating
enzyme variant, UBC13, HUBC13, polyubiquitination,
ligase, signaling protein; NMR {Homo sapiens}
Length = 170
Score = 99.8 bits (249), Expect = 6e-26
Identities = 18/54 (33%), Positives = 27/54 (50%)
Query: 230 NDDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVY 283
D L W I GPP T+Y+ + ++ YP +PP +RF+TK+ V
Sbjct: 64 EDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINMNGVN 117
Score = 58.2 bits (141), Expect = 1e-10
Identities = 15/66 (22%), Positives = 25/66 (37%), Gaps = 3/66 (4%)
Query: 1 MAQVPTSSALRALSMEYKSLQEEPVEG---FRVKLVNDDNLFEWEVAIFGPPDTLYQGGY 57
+ L E + Q+ +G + ++ D L W I GPP T+Y+
Sbjct: 28 HCKGVKVPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRI 87
Query: 58 FKAIIE 63
+ IE
Sbjct: 88 YSLKIE 93
>2onu_A Ubiquitin-conjugating enzyme, putative; UBC, plasmodium FAL
structural genomics consortium, SGC, ligase; HET: PG4;
2.38A {Plasmodium falciparum}
Length = 152
Score = 98.9 bits (247), Expect = 7e-26
Identities = 23/57 (40%), Positives = 37/57 (64%)
Query: 230 NDDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVYEGT 286
N+ + +++V GP T Y+GG +K H+ P DYP++ P+I F+ K+ HPNV E +
Sbjct: 24 NNGSTQDFDVMFHGPNGTAYEGGIWKVHVTLPDDYPFASPSIGFMNKLLHPNVDEAS 80
Score = 57.7 bits (140), Expect = 1e-10
Identities = 10/48 (20%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 16 EYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAIIE 63
+ + + G+ ++L + + +++V GP T Y+GG +K +
Sbjct: 7 KQCDFTKLIMAGYDLELN-NGSTQDFDVMFHGPNGTAYEGGIWKVHVT 53
>1jat_B Ubiquitin-conjugating enzyme variant MMS2; UEV, ligase; 1.60A
{Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 2gmi_B
Length = 138
Score = 98.5 bits (246), Expect = 8e-26
Identities = 15/54 (27%), Positives = 28/54 (51%)
Query: 230 NDDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVY 283
+D + +W I GPP + ++ + + +YP SPP + F++K+ P V
Sbjct: 35 DDITMTKWNGTILGPPHSNHENRIYSLSIDCGPNYPDSPPKVTFISKINLPCVN 88
Score = 56.1 bits (136), Expect = 3e-10
Identities = 14/66 (21%), Positives = 26/66 (39%), Gaps = 6/66 (9%)
Query: 1 MAQVPTSSALRALSMEYKSLQ-EEPVEGFRVKLVNDD--NLFEWEVAIFGPPDTLYQGGY 57
M++VP L E + + E L + D + +W I GPP + ++
Sbjct: 2 MSKVP---RNFRLLEELEKGEKGFGPESCSYGLADSDDITMTKWNGTILGPPHSNHENRI 58
Query: 58 FKAIIE 63
+ I+
Sbjct: 59 YSLSID 64
>2ayv_A Ubiquitin-conjugating enzyme E2; structural genomics, structural
genomics consortium, ubiquit ubiquitin-conjugating
enzyme, SGC, ligase; 2.00A {Toxoplasma gondii} SCOP:
d.20.1.1
Length = 166
Score = 99.3 bits (248), Expect = 8e-26
Identities = 24/53 (45%), Positives = 35/53 (66%)
Query: 231 DDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVY 283
D++F W+ I GP D+ Y GG F ++ FP DYP+ PP + F TK++HPN+
Sbjct: 47 GDDMFHWQATIMGPEDSPYSGGVFFLNIHFPSDYPFKPPKVNFTTKIYHPNIN 99
Score = 65.4 bits (160), Expect = 3e-13
Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
Query: 1 MAQVPTSSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKA 60
+ AL+ ++ E L ++P V D++F W+ I GP D+ Y GG F
Sbjct: 14 RENLYFQGALKRINKELNDLSKDPPTNCSAGPV-GDDMFHWQATIMGPEDSPYSGGVFFL 72
Query: 61 IIE 63
I
Sbjct: 73 NIH 75
>2a4d_A Ubiquitin-conjugating enzyme E2 variant 1; alternative splicing,
nuclear protein, UBL conjugation pathway,ubiquitin,
ligase, structural genomics; 1.69A {Homo sapiens} SCOP:
d.20.1.1 PDB: 2c2v_C 1j7d_A 1j74_A 1zgu_A
Length = 160
Score = 99.0 bits (247), Expect = 9e-26
Identities = 18/54 (33%), Positives = 27/54 (50%)
Query: 230 NDDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVY 283
D L W I GPP T+Y+ + ++ YP +PP +RF+TK+ V
Sbjct: 54 EDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINMNGVN 107
Score = 57.0 bits (138), Expect = 3e-10
Identities = 17/65 (26%), Positives = 26/65 (40%), Gaps = 4/65 (6%)
Query: 2 AQVPTSSALRALSMEYKSLQEEPVEG---FRVKLVNDDNLFEWEVAIFGPPDTLYQGGYF 58
V R L E + Q+ +G + ++ D L W I GPP T+Y+ +
Sbjct: 20 TGVKVPRNFR-LLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIY 78
Query: 59 KAIIE 63
IE
Sbjct: 79 SLKIE 83
>1jat_A Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, ligase; 1.60A
{Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1jbb_A
2gmi_A 3hct_B 3hcu_B 4dhi_D 1j7d_B 4dhj_C 4dhz_F
Length = 155
Score = 98.5 bits (246), Expect = 1e-25
Identities = 24/55 (43%), Positives = 35/55 (63%)
Query: 230 NDDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVYE 284
+DDNL ++V I GP + Y+ G F+ + P DYP P +RFLTK++HPN+
Sbjct: 30 HDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPNIDR 84
Score = 63.8 bits (156), Expect = 8e-13
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Query: 5 PTSSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAIIE 63
+S + + E + L +PV G + DDNL ++V I GP + Y+ G F+ +
Sbjct: 2 SAASLPKRIIKETEKLVSDPVPGITAEPH-DDNLRYFQVTIEGPEQSPYEDGIFELELY 59
>2c2v_B Ubiquitin-conjugating enzyme E2 N; chaperone, heat-shock protein
complex, E3 ligase, ubiquitiny TPR, heat-shock protein;
2.9A {Homo sapiens} SCOP: d.20.1.1
Length = 154
Score = 98.5 bits (246), Expect = 1e-25
Identities = 22/54 (40%), Positives = 35/54 (64%)
Query: 230 NDDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVY 283
++ N + V I GP D+ ++GG FK + P +YP + P +RF+TK++HPNV
Sbjct: 30 DESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVD 83
Score = 64.6 bits (158), Expect = 5e-13
Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 6 TSSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAIIE 63
++ R + E + L EPV G + + + N + V I GP D+ ++GG FK +
Sbjct: 3 SAGLPRRIIKETQRLLAEPVPGIKAEPD-ESNARYFHVVIAGPQDSPFEGGTFKLELF 59
>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium, SGC,
ligase; 1.90A {Plasmodium yoelii}
Length = 216
Score = 100 bits (250), Expect = 1e-25
Identities = 28/54 (51%), Positives = 36/54 (66%)
Query: 230 NDDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVY 283
D N FEW I GP T Y+GG+F + P DYPY+PP I+F+TK+WHPN+
Sbjct: 48 KDSNFFEWVGFIKGPEGTPYEGGHFTLAITIPNDYPYNPPKIKFVTKIWHPNIS 101
Score = 66.3 bits (162), Expect = 4e-13
Identities = 21/58 (36%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Query: 6 TSSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAIIE 63
S L L E K ++ E V+ + D N FEW I GP T Y+GG+F I
Sbjct: 21 GSKELLRLQKELKDIENENVQEIDAHIK-DSNFFEWVGFIKGPEGTPYEGGHFTLAIT 77
>1yh2_A HSPC150 protein similar to ubiquitin-conjugating enzyme; structural
genomics consortium, HSCP150, ligase, SGC; 2.00A {Homo
sapiens} SCOP: d.20.1.1
Length = 169
Score = 98.6 bits (246), Expect = 1e-25
Identities = 21/55 (38%), Positives = 31/55 (56%)
Query: 230 NDDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVYE 284
+ D + + I G +T Y+ G FK + P YP+ PP IRFLT ++HPN+
Sbjct: 29 DKDQMDDLRAQILGGANTPYEKGVFKLEVIIPERYPFEPPQIRFLTPIYHPNIDS 83
Score = 63.5 bits (155), Expect = 1e-12
Identities = 14/58 (24%), Positives = 20/58 (34%), Gaps = 1/58 (1%)
Query: 6 TSSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAIIE 63
+ L E L EP G D + + I G +T Y+ G FK +
Sbjct: 2 SMQRASRLKRELHMLATEPPPGITCWQD-KDQMDDLRAQILGGANTPYEKGVFKLEVI 58
>2f4z_A Tgtwinscan_2721 - E2 domain; ubiquitin conjugating tgtwinscan_2721,
structural genomics, structural genomics consortium,
SGC; 2.11A {Toxoplasma gondii} SCOP: d.20.1.1
Length = 193
Score = 99.5 bits (248), Expect = 2e-25
Identities = 23/54 (42%), Positives = 34/54 (62%)
Query: 230 NDDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVY 283
++ W I GP T Y+GG+F + P DYPY+PP ++F+TK+WHPN+
Sbjct: 70 VGGDIHRWRGFIAGPLGTPYEGGHFTLDIVIPPDYPYNPPKMKFVTKIWHPNIS 123
Score = 54.8 bits (132), Expect = 3e-09
Identities = 12/53 (22%), Positives = 20/53 (37%), Gaps = 1/53 (1%)
Query: 11 RALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAIIE 63
+ + G ++V ++ W I GP T Y+GG+F I
Sbjct: 48 QRAHDSEPAATHSTSHGVSAQIV-GGDIHRWRGFIAGPLGTPYEGGHFTLDIV 99
>3bzh_A Ubiquitin-conjugating enzyme E2 E1; structural genomics consortium,
ubiquitin-conjuga enzyme, ligase, SGC, UBL conjugation
pathway; 1.60A {Homo sapiens} PDB: 1y6l_A
Length = 194
Score = 99.1 bits (247), Expect = 2e-25
Identities = 21/55 (38%), Positives = 34/55 (61%)
Query: 230 NDDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVYE 284
DN++EW I GPP ++Y+GG F + F +YP+ PP + F T+++H N+
Sbjct: 73 KGDNIYEWRSTILGPPGSVYEGGVFFLDITFTPEYPFKPPKVTFRTRIYHCNINS 127
Score = 65.5 bits (160), Expect = 4e-13
Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Query: 6 TSSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAIIE 63
S++ + + E + +P DN++EW I GPP ++Y+GG F I
Sbjct: 46 LSTSAKRIQKELADITLDPPPNCSAGPK-GDNIYEWRSTILGPPGSVYEGGVFFLDIT 102
>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure,
ATP-binding, isopeptide BO ligase, nucleotide-binding,
UBL conjugation pathway; 1.80A {Homo sapiens} PDB:
3k9p_A 1yla_A 2o25_A
Length = 201
Score = 99.0 bits (247), Expect = 2e-25
Identities = 27/57 (47%), Positives = 38/57 (66%)
Query: 230 NDDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVYEGT 286
D+N E I GPPDT Y+GG ++ +K P YP++PP +RF+TK+WHPN+ T
Sbjct: 33 VDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVT 89
Score = 56.3 bits (136), Expect = 1e-09
Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
Query: 1 MAQVPTSSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKA 60
MA ++ E +E +V LV D+N E I GPPDT Y+GG ++
Sbjct: 2 MAN-IAVQRIKREFKEVLKSEETSKNQIKVDLV-DENFTELRGEIAGPPDTPYEGGRYQL 59
Query: 61 IIE 63
I+
Sbjct: 60 EIK 62
>1yf9_A Ubiquitin carrier protein 4; SGPP, structural genomics, PSI,
protein structure initiative ubiquitin conjugating
enzyme; 2.00A {Leishmania major} SCOP: d.20.1.1
Length = 171
Score = 97.8 bits (244), Expect = 3e-25
Identities = 21/56 (37%), Positives = 32/56 (57%)
Query: 231 DDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVYEGT 286
D + E+ V GP T Y+ G + H++ P DYP+ P+I F ++ HPNV E +
Sbjct: 34 SDTVAEFWVEFKGPEGTPYEDGTWMLHVQLPSDYPFKSPSIGFCNRILHPNVDERS 89
Score = 57.0 bits (138), Expect = 4e-10
Identities = 13/63 (20%), Positives = 24/63 (38%), Gaps = 5/63 (7%)
Query: 1 MAQVPTSSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKA 60
M+ + R M+Y L + + D + E+ V GP T Y+ G +
Sbjct: 5 MSGAGNLRSNRRREMDYMRLCNSTRKVY-----PSDTVAEFWVEFKGPEGTPYEDGTWML 59
Query: 61 IIE 63
++
Sbjct: 60 HVQ 62
>1wzv_A Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A {Homo sapiens}
SCOP: d.20.1.1 PDB: 1wzw_A 2kjh_A
Length = 155
Score = 97.0 bits (242), Expect = 4e-25
Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 224 FRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVY 283
R +D N+ W + P Y F + FP +YP+ PP I+F TK++HPNV
Sbjct: 24 LRNLSSDDANVLVWHALL-LPDQPPYHLKAFNLRISFPPEYPFKPPMIKFTTKIYHPNVD 82
Query: 284 E 284
E
Sbjct: 83 E 83
Score = 66.1 bits (162), Expect = 1e-13
Identities = 13/58 (22%), Positives = 21/58 (36%), Gaps = 1/58 (1%)
Query: 6 TSSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAIIE 63
+ A + E + LQ++P R +D N+ W + P Y F I
Sbjct: 2 SHMASMRVVKELEDLQKKPPPYLRNLSSDDANVLVWHALL-LPDQPPYHLKAFNLRIS 58
>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting,
ligase, alternative splicing, cytoplasm, UBL
conjugation, UBL conjugation pathway; 1.86A {Homo
sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*
Length = 253
Score = 99.6 bits (248), Expect = 5e-25
Identities = 27/58 (46%), Positives = 39/58 (67%)
Query: 229 VNDDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVYEGT 286
+ D+N E I GPPDT Y+GG ++ +K P YP++PP +RF+TK+WHPN+ T
Sbjct: 84 LVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVT 141
Score = 57.2 bits (138), Expect = 8e-10
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
Query: 1 MAQVPTSSALRALSMEYKSLQ---EEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGY 57
+ A++ + E+K + E +V LV D+N E I GPPDT Y+GG
Sbjct: 50 SEFDMANIAVQRIKREFKEVLKSEETSKNQIKVDLV-DENFTELRGEIAGPPDTPYEGGR 108
Query: 58 FKAIIE 63
++ I+
Sbjct: 109 YQLEIK 114
>2z5d_A Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, ligase, structural
genomics, structural genomics consortium; 2.10A {Homo
sapiens}
Length = 179
Score = 97.5 bits (243), Expect = 5e-25
Identities = 21/56 (37%), Positives = 33/56 (58%)
Query: 231 DDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVYEGT 286
L E+ V +GP T Y+GG +K + P YP+ P+I F+ K++HPN+ E +
Sbjct: 47 LGGLNEFVVKFYGPQGTPYEGGVWKVRVDLPDKYPFKSPSIGFMNKIFHPNIDEAS 102
Score = 57.0 bits (138), Expect = 4e-10
Identities = 15/57 (26%), Positives = 23/57 (40%), Gaps = 5/57 (8%)
Query: 7 SSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAIIE 63
S R + + L E E L E+ V +GP T Y+GG +K ++
Sbjct: 24 SPGKRRMDTDVIKLIESKHEV-----TILGGLNEFVVKFYGPQGTPYEGGVWKVRVD 75
>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1;
inhibition, hydrolase-ligase complex; 3.30A {Homo
sapiens} PDB: 4ddi_A
Length = 399
Score = 97.7 bits (243), Expect = 2e-23
Identities = 24/53 (45%), Positives = 35/53 (66%)
Query: 231 DDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVY 283
D++F W+ I GP D+ YQGG F + FP DYP+ PP + F T+++HPN+
Sbjct: 29 GDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNIN 81
Score = 64.6 bits (157), Expect = 6e-12
Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Query: 7 SSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAIIE 63
+ AL+ + E L +P V D++F W+ I GP D+ YQGG F I
Sbjct: 2 AMALKRIHKELNDLARDPPAQCSAGPV-GDDMFHWQATIMGPNDSPYQGGVFFLTIH 57
>1y8x_A Ubiquitin-conjugating enzyme E2 M; ubiquitin-conjugating enzyme E2
M, ligase; 2.40A {Homo sapiens} SCOP: d.20.1.1
Length = 160
Score = 92.7 bits (231), Expect = 2e-23
Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Query: 224 FRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVY 283
+ + D+L +++ I P + Y+ G F K YP+ PP ++ T V+HPN+
Sbjct: 24 CDISFSDPDDLLNFKLVI-CPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNID 82
Query: 284 E 284
Sbjct: 83 L 83
Score = 52.3 bits (126), Expect = 1e-08
Identities = 10/58 (17%), Positives = 22/58 (37%), Gaps = 3/58 (5%)
Query: 6 TSSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAIIE 63
S+A + + L + + D+L +++ I P + Y+ G F +
Sbjct: 4 ASAAQLRIQKDINELNLPK--TCDISFSDPDDLLNFKLVI-CPDEGFYKSGKFVFSFK 58
>2nvu_C NEDD8-conjugating enzyme UBC12; multifunction macromolecular
complex, ubiquitin, ATP, conformational change,
thioester, switch, adenylation, protein turnover,
ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: d.20.1.1
Length = 180
Score = 92.8 bits (231), Expect = 3e-23
Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Query: 224 FRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVY 283
+ + D+L +++ I P + Y+ G F K YP+ PP ++ T V+HPN+
Sbjct: 44 CDISFSDPDDLLNFKLVI-CPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNID 102
Query: 284 E 284
Sbjct: 103 L 103
Score = 54.3 bits (131), Expect = 3e-09
Identities = 10/58 (17%), Positives = 22/58 (37%), Gaps = 3/58 (5%)
Query: 6 TSSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAIIE 63
S+A + + L + + D+L +++ I P + Y+ G F +
Sbjct: 24 ASAAQLRIQKDINELNLPK--TCDISFSDPDDLLNFKLVI-CPDEGFYKSGKFVFSFK 78
>2f4w_A Ubiquitin-conjugating enzyme E2, J2; endoplasmic reticulum, ligase,
UBL conjugation pathway, structural genomics consortium
(SGC); 2.00A {Homo sapiens} SCOP: d.20.1.1
Length = 187
Score = 92.1 bits (229), Expect = 8e-23
Identities = 17/53 (32%), Positives = 27/53 (50%)
Query: 230 NDDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNV 282
N+ EW + GP T Y+GGY+ + FP ++P+ PP+I +T
Sbjct: 39 LPSNILEWHYVVRGPEMTPYEGGYYHGKLIFPREFPFKPPSIYMITPNGRFKC 91
Score = 70.6 bits (173), Expect = 7e-15
Identities = 15/59 (25%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 5 PTSSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAIIE 63
++A + L +Y ++++PV + + N+ EW + GP T Y+GGY+ +
Sbjct: 11 APTTATQRLKQDYLRIKKDPVPYICAEPL-PSNILEWHYVVRGPEMTPYEGGYYHGKLI 68
>3o2u_A NEDD8-conjugating enzyme UBC12; E2 conjugase, ligase; 2.00A
{Saccharomyces cerevisiae} PDB: 3tdi_C
Length = 190
Score = 84.4 bits (209), Expect = 6e-20
Identities = 15/59 (25%), Positives = 25/59 (42%), Gaps = 4/59 (6%)
Query: 230 NDDNLFEWEVA----IFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVYE 284
+ D+ + I P + Y G ++ F YP PP + L K++HPN+
Sbjct: 54 SPDSADRSQSPKLEVIVRPDEGYYNYGSINFNLDFNEVYPIEPPKVVCLKKIFHPNIDL 112
Score = 48.2 bits (115), Expect = 4e-07
Identities = 12/62 (19%), Positives = 19/62 (30%), Gaps = 5/62 (8%)
Query: 6 TSSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVA----IFGPPDTLYQGGYFKAI 61
S+A L + SL P V D+ + I P + Y G
Sbjct: 27 LSAARIRLKRDLDSLDLPPTVTLNVITS-PDSADRSQSPKLEVIVRPDEGYYNYGSINFN 85
Query: 62 IE 63
++
Sbjct: 86 LD 87
>1zuo_A Hypothetical protein LOC92912; ligase, ubiquitin-conjugating
enzyme, structural genomics consortium ,SGC; 1.80A {Homo
sapiens} SCOP: d.20.1.1 PDB: 2qgx_A
Length = 186
Score = 83.1 bits (205), Expect = 1e-19
Identities = 15/70 (21%), Positives = 28/70 (40%), Gaps = 13/70 (18%)
Query: 229 VNDDNLFEWEVAIFG-PPDTLYQGG-----------YFKAHMKFPIDYPYSPPTIRFLTK 276
+ +D+L++W V + PD+ Y + F ++P+ PP +R +
Sbjct: 54 LINDSLYDWHVKLQKVDPDSPLHSDLQILKEKEGIEYILLNFSFKDNFPFDPPFVRVVLP 113
Query: 277 VWHPN-VYEG 285
V V G
Sbjct: 114 VLSGGYVLGG 123
Score = 54.9 bits (132), Expect = 2e-09
Identities = 12/77 (15%), Positives = 26/77 (33%), Gaps = 3/77 (3%)
Query: 1 MAQVPTSSALRALSMEYKSLQEEPVEGFRVKLV--NDDNLFEWEVAIFG-PPDTLYQGGY 57
A + A L E + + + V +D+L++W V + PD+
Sbjct: 20 GAVSGSVQASDRLMKELRDIYRSQSYKTGIYSVELINDSLYDWHVKLQKVDPDSPLHSDL 79
Query: 58 FKAIIEGELPHWDVNVQ 74
+ + + +N
Sbjct: 80 QILKEKEGIEYILLNFS 96
>3ceg_A Baculoviral IAP repeat-containing protein 6; apoptosis, ligase,
protease inhibitor, thiol protease inhibitor, UBL
conjugation pathway; HET: MSE; 2.01A {Homo sapiens}
Length = 323
Score = 85.9 bits (212), Expect = 2e-19
Identities = 23/61 (37%), Positives = 31/61 (50%), Gaps = 5/61 (8%)
Query: 229 VNDDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWH-----PNVY 283
+++ L +V I GP DT Y G F+ + FP DYP SPP + T H PN+Y
Sbjct: 104 CDEERLDIMKVLITGPADTPYANGCFEFDVYFPQDYPSSPPLVNLETTGGHSVRFNPNLY 163
Query: 284 E 284
Sbjct: 164 N 164
Score = 60.5 bits (146), Expect = 1e-10
Identities = 14/66 (21%), Positives = 25/66 (37%), Gaps = 3/66 (4%)
Query: 1 MAQVPTSSALRALSMEYKSLQEEPVEGFR---VKLVNDDNLFEWEVAIFGPPDTLYQGGY 57
+++ R L+ E +L +++ L +V I GP DT Y G
Sbjct: 69 ANDANSAARARRLAQEAVTLSTSLPLSSSSSVFVRCDEERLDIMKVLITGPADTPYANGC 128
Query: 58 FKAIIE 63
F+ +
Sbjct: 129 FEFDVY 134
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 41.2 bits (96), Expect = 3e-04
Identities = 63/356 (17%), Positives = 102/356 (28%), Gaps = 160/356 (44%)
Query: 5 PTSSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQG---GYFKAI 61
++SAL ++++ E +LV AIFG QG YF+
Sbjct: 140 KSNSAL------FRAVGEG-----NAQLV----------AIFGG-----QGNTDDYFE-- 171
Query: 62 IEGELPHWDVNVQNQIENLTKTFEASSFISAPLYT--ESWLRSFVSYVRRN-QDFLNVTI 118
EL ++ LY + + + + + T+
Sbjct: 172 ---EL-------RD------------------LYQTYHVLVGDLIKFSAETLSELIRTTL 203
Query: 119 DTREGFLKTLNDL-WLFKPN-----------PFSLDIKFNDDGTKIIASRFMIQAVNI-- 164
D + F + LN L WL P+ P S +I +IQ +
Sbjct: 204 DAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISC---------PLI---GVIQLAHYVV 251
Query: 165 ---TDGNMEKEMVKELR-RIAHESSLNVSV----------FHP------YFVFF------ 198
G E+ L+ H L +V F +FF
Sbjct: 252 TAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCY 311
Query: 199 DQF--ELVRPTTIQS-----------MLGGSV---TMMFIRFRVKLVNDDNLFEWE-VAI 241
+ + + P+ ++ ML S+ T ++ V N +L + V I
Sbjct: 312 EAYPNTSLPPSILEDSLENNEGVPSPML--SISNLTQEQVQDYVNKTNS-HLPAGKQVEI 368
Query: 242 --------F---GPPDTLYQGGYFKAH---MKFPIDY-----PYS--PPTI--RFL 274
GPP +LY K P P+S RFL
Sbjct: 369 SLVNGAKNLVVSGPPQSLYG---LNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFL 421
Score = 40.8 bits (95), Expect = 4e-04
Identities = 55/324 (16%), Positives = 100/324 (30%), Gaps = 114/324 (35%)
Query: 7 SSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAIIEGEL 66
+ + R L++ + SL E + P + +F A +L
Sbjct: 3 AYSTRPLTLSHGSL---------------------EHVLLVPTAS-----FFIAS---QL 33
Query: 67 PHWDVNVQNQIENLTKTFEASSFISAPLYTESWLRSFVSYVRRNQDFLNVTIDTREGFLK 126
+ + T+ F A + P E + F+ YV + V + L
Sbjct: 34 --QE-QFNKILPEPTEGFAADDEPTTPA--ELVGK-FLGYVSSLVEPSKVG--QFDQVLN 85
Query: 127 TLNDLWLFKPNPFSL---DI-----KF-NDDGTKIIASRFMIQ----AVNITDGNMEKEM 173
L F+ + L DI K ++ T ++ ++ +I+ A + +K
Sbjct: 86 LC--LTEFENC-Y-LEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDK-- 139
Query: 174 VKELRRIAHESSLNVSV----FHPYFVF---------FDQFELVRP--TTIQSMLGGSVT 218
S+L +V +F F+ EL R T ++G +
Sbjct: 140 -------KSNSALFRAVGEGNAQLVAIFGGQGNTDDYFE--EL-RDLYQTYHVLVGDLIK 189
Query: 219 MMFIRFRVKLVNDD-----------NLFEWEVAIFGP---PDTLYQGGYFKAHMKFPIDY 264
+L+ N+ EW + P PD Y +
Sbjct: 190 FSAETLS-ELIRTTLDAEKVFTQGLNILEW---LENPSNTPDK----DYLLS-------I 234
Query: 265 PYSPPTIRFLTKVWHPNVYEGTAQ 288
P S P I + ++ H Y TA+
Sbjct: 235 PISCPLI-GVIQLAH---YVVTAK 254
Score = 40.4 bits (94), Expect = 5e-04
Identities = 45/264 (17%), Positives = 75/264 (28%), Gaps = 114/264 (43%)
Query: 4 VPTS-SALRALSMEYKSLQEEPVEGFR----------VKLVN-DDNLFEWEVAIFGPPDT 51
VP+ ++ L+ E +Q+ V + LVN NL V + GPP +
Sbjct: 334 VPSPMLSISNLTQE--QVQDY-VNKTNSHLPAGKQVEISLVNGAKNL----V-VSGPPQS 385
Query: 52 LYQGGYFKAIIEGE--LPHWDVNVQNQIENLTKTFEASSFISAPLYTESWLRSFVSYVRR 109
LY + D Q++I ++E R R
Sbjct: 386 LYG---LNLTLRKAKAPSGLD---QSRIP----------------FSE---RKLKFSNR- 419
Query: 110 NQDFLNVTIDTREGFLKTLNDLWLFKPNPFSLDIKFNDDGTKIIASRFMIQAVNITDGNM 169
FL V PF S ++ A ++ + ++
Sbjct: 420 ---FLPVAS-------------------PFH--------------SHLLVPASDLINKDL 443
Query: 170 EKEMVKELRRIAHESSLNVSVFHPYFVFFDQFELVRPTTIQSMLGGSVTMMFIRFRVKLV 229
K V + + + V+ FD +L R + + + IR V
Sbjct: 444 VKNNVS-----FNAKDIQIPVYDT----FDGSDL-R--VLSGSISERIVDCIIRLPV--- 488
Query: 230 NDDNLFEWEVAI---------FGP 244
+WE FGP
Sbjct: 489 ------KWETTTQFKATHILDFGP 506
Score = 32.3 bits (73), Expect = 0.23
Identities = 18/73 (24%), Positives = 32/73 (43%), Gaps = 10/73 (13%)
Query: 123 GFLKTLNDLWLFKPNPFSLDIKFNDDGTKIIASRFM-IQAVNITDGNMEKEMV-KELRRI 180
GF ++ D+ NP +L I F + K I + + I DG ++ E + KE+
Sbjct: 1658 GF--SILDI--VINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEI--- 1710
Query: 181 AHESSLNVSVFHP 193
+E S + +
Sbjct: 1711 -NEHSTSYTFRSE 1722
Score = 27.3 bits (60), Expect = 7.3
Identities = 18/76 (23%), Positives = 22/76 (28%), Gaps = 23/76 (30%)
Query: 3 QVP-----TSSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAI---------FGP 48
Q+P S LR LS S+ E V+ V WE FGP
Sbjct: 456 QIPVYDTFDGSDLRVLS---GSISERIVDCIIRLPVK------WETTTQFKATHILDFGP 506
Query: 49 PDTLYQGGYFKAIIEG 64
G +G
Sbjct: 507 GGASGLGVLTHRNKDG 522
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 37.5 bits (86), Expect = 0.005
Identities = 34/249 (13%), Positives = 74/249 (29%), Gaps = 68/249 (27%)
Query: 93 PLYTESWLRSF-VSYVRRNQDFLNVTIDTRE--GFLKTLND-------LWLFKPNPFSLD 142
++ ++++ +F V QD + E + + + W +
Sbjct: 23 SVFEDAFVDNFDCKDV---QDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMV 79
Query: 143 IKFNDDGTKI----IASRFMIQAVNITDGNMEKEMVKELRRIAHESSLNVSVFHPYFVF- 197
KF ++ +I + S I+ M + +++ R+ + + VF Y V
Sbjct: 80 QKFVEEVLRINYKFLMSP--IKTEQRQPSMMTRMYIEQRDRLYN----DNQVFAKYNVSR 133
Query: 198 ---FDQ-----FELVRPT---TIQSMLG-G-SV-TMMFIR-FRVKLVNDDNLFEW----- 237
+ + EL RP I +LG G + + ++V+ D +F W
Sbjct: 134 LQPYLKLRQALLEL-RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIF-WLNLKN 191
Query: 238 ---EVAIFGPPDTLYQ--GGYFKAHMKFPIDYPYSPPTI-----RFLTK----------- 276
+ L + + + +I R L
Sbjct: 192 CNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLL 251
Query: 277 -VWHPNVYE 284
V + +
Sbjct: 252 NVQNAKAWN 260
Score = 34.4 bits (78), Expect = 0.040
Identities = 33/194 (17%), Positives = 71/194 (36%), Gaps = 46/194 (23%)
Query: 5 PTSSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFE-WEVAIFGPPDTLYQGGYF----- 58
++ ++ ++ +E K E R +V+ N+ + ++ PP Y YF
Sbjct: 423 ESTISIPSIYLELKVKLENEYALHR-SIVDHYNIPKTFDSDDLIPP---YLDQYFYSHIG 478
Query: 59 ---KAIIEGE----LPHWDVN---VQNQIENLTKTFEASSFISAPLYTESWLRSFVSYVR 108
K I E ++ ++ +I + + + AS I L L+ + Y+
Sbjct: 479 HHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQ---LKFYKPYIC 535
Query: 109 RNQDFLNVTIDTREGFLKTLNDLWLFKPNPFSLDIKFNDDGTKIIASRF--MIQ-AVNIT 165
N E + + D F P +I S++ +++ A+
Sbjct: 536 DND-------PKYERLVNAILD---FLPKI----------EENLICSKYTDLLRIALMAE 575
Query: 166 DGNMEKEMVKELRR 179
D + +E K+++R
Sbjct: 576 DEAIFEEAHKQVQR 589
Score = 34.1 bits (77), Expect = 0.060
Identities = 53/363 (14%), Positives = 99/363 (27%), Gaps = 97/363 (26%)
Query: 3 QVPTS-SALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIF-----GPP------- 49
+ S L S QEE V+ F +++ + +++ ++ P
Sbjct: 56 MSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRIN--YKFLMSPIKTEQRQPSMMTRMYI 113
Query: 50 ---DTLYQGG--YFKAIIEGELPHWDVNVQNQIENLT--------------KTFEASSFI 90
D LY + K + P+ ++ + L KT+ A
Sbjct: 114 EQRDRLYNDNQVFAKYNVSRLQPYL--KLRQALLELRPAKNVLIDGVLGSGKTWVALDVC 171
Query: 91 SAPLYTES------WLRSFVSYVRRNQDFLN--------------------VTIDTREGF 124
+ WL + + L I R
Sbjct: 172 LSYKVQCKMDFKIFWLN--LKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHS 229
Query: 125 LKT-LNDLWLFKPNPFSLDI-----------KFNDDGTKI-IASRFMIQAVNITDGNMEK 171
++ L L KP L + F + KI + +RF Q +
Sbjct: 230 IQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF-NLSCKILLTTRF-KQVTDFLSAATTT 287
Query: 172 EMVKELRRIAHESSLNVSVFHPYFVFFDQFEL------VRPTTIQSMLGGSVTMMFIRF- 224
+ + + S+ Y + +L P + S++ S+ +
Sbjct: 288 HISLDHHSMTLTPDEVKSLLLKY-LDCRPQDLPREVLTTNPRRL-SIIAESIRDGLATWD 345
Query: 225 RVKLVNDDNL---FEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPN 281
K VN D L E + + P + Y+ F FP L+ +W
Sbjct: 346 NWKHVNCDKLTTIIESSLNVLEPAE--YR-KMFDRLSVFPPSAHIPTIL---LSLIWFDV 399
Query: 282 VYE 284
+
Sbjct: 400 IKS 402
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 32.2 bits (72), Expect = 0.087
Identities = 6/24 (25%), Positives = 13/24 (54%), Gaps = 7/24 (29%)
Query: 170 EKEMVKELRRIAHESSLNVSVFHP 193
EK+ +K+L ++SL ++
Sbjct: 18 EKQALKKL-----QASLK--LYAD 34
>3obq_A Tumor susceptibility gene 101 protein; protein transprot, ubiquitin
binding, protein transport; 1.40A {Homo sapiens} PDB:
3obs_A 3obu_A 3obx_A 3p9g_A* 3p9h_A* 2f0r_A 1kpp_A
1kpq_A 1m4p_A 1m4q_A 1s1q_A
Length = 146
Score = 27.6 bits (61), Expect = 3.3
Identities = 8/33 (24%), Positives = 13/33 (39%), Gaps = 2/33 (6%)
Query: 241 IFGPPDTLYQGGYFKAHMKF--PIDYPYSPPTI 271
+ G Y+G + + YPY+PP
Sbjct: 56 LTGTIPVPYRGNTYNIPICLWLLDTYPYNPPIC 88
>2ebm_A RWD domain-containing protein 1; alpha+beta sandwich fold, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 128
Score = 26.8 bits (59), Expect = 4.7
Identities = 5/53 (9%), Positives = 14/53 (26%)
Query: 229 VNDDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPN 281
V +N + + + + + YP P ++ +
Sbjct: 32 VLSENPPSFTITVTSEAGENDETVQTTLKFTYSEKYPDEAPLYEIFSQENLED 84
>3nem_A Aspartyl-tRNA synthetase; rossmann fold, OB fold, ligase; HET: AMO
ATP; 1.89A {Thermococcus kodakarensis} PDB: 3nel_A*
3nen_A 1b8a_A*
Length = 438
Score = 27.2 bits (61), Expect = 7.2
Identities = 5/32 (15%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Query: 157 FMIQAVNITDGNMEKEMVKELRRIAHESSLNV 188
++Q ++ E+ K + ++ E + V
Sbjct: 44 GIVQIT-APKKKVDPELFKLIPKLRSEDVVAV 74
>1yu0_A Major tropism determinant (MTD-P1); C-type lectin, beta sandwich,
beta prism, variability, diver generating retroelement,
viral protein; 1.56A {Bordetella phage bpp-1} SCOP:
b.163.1.1 d.169.1.8 PDB: 2iou_A 1yu1_A 1yu2_A 1yu4_A
1yu3_A
Length = 381
Score = 27.2 bits (59), Expect = 7.2
Identities = 7/54 (12%), Positives = 14/54 (25%), Gaps = 7/54 (12%)
Query: 236 EWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVW-----HPNVYE 284
E++ FG + GG + + T W ++
Sbjct: 257 EFQALAFGTTEATSSGGTDVPTTGV--NGTGATSAWNIFTSKWGVVQASGCLWT 308
Score = 27.2 bits (59), Expect = 7.9
Identities = 5/18 (27%), Positives = 8/18 (44%)
Query: 40 EWEVAIFGPPDTLYQGGY 57
E++ FG + GG
Sbjct: 257 EFQALAFGTTEATSSGGT 274
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.139 0.424
Gapped
Lambda K H
0.267 0.0662 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,567,458
Number of extensions: 268403
Number of successful extensions: 594
Number of sequences better than 10.0: 1
Number of HSP's gapped: 550
Number of HSP's successfully gapped: 128
Length of query: 289
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 196
Effective length of database: 4,105,140
Effective search space: 804607440
Effective search space used: 804607440
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (25.9 bits)