RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy621
(289 letters)
>d2awfa1 d.20.1.1 (A:7-131) Ubiquitin conjugating enzyme, UBC {Human
(Homo sapiens), E2 G1 [TaxId: 9606]}
Length = 125
Score = 77.8 bits (191), Expect = 1e-18
Identities = 35/63 (55%), Positives = 48/63 (76%)
Query: 224 FRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVY 283
F L++D++L+ WEV I GPPDTLY+GG FKAH+ FP DYP PP ++F+T++WHPNV
Sbjct: 19 FSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIWHPNVD 78
Query: 284 EGT 286
+
Sbjct: 79 KNG 81
Score = 62.4 bits (151), Expect = 6e-13
Identities = 26/57 (45%), Positives = 36/57 (63%)
Query: 13 LSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAIIEGELPHW 69
L + L + PVEGF L++D++L+ WEV I GPPDTLY+GG FKA + +
Sbjct: 4 LRRQLAELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYP 60
>d1pzva_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Nematode
(Caenorhabditis elegans), E2-19 kDa [TaxId: 6239]}
Length = 161
Score = 73.3 bits (179), Expect = 1e-16
Identities = 31/66 (46%), Positives = 49/66 (74%)
Query: 224 FRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVY 283
F LV+D+++++WEV + GPPDTLY+GG+FKA + FP DYP PP ++F++++WHPN+
Sbjct: 20 FSAGLVDDNDIYKWEVLVIGPPDTLYEGGFFKAILDFPRDYPQKPPKMKFISEIWHPNID 79
Query: 284 EGTAQY 289
+
Sbjct: 80 KEGNVC 85
Score = 57.5 bits (138), Expect = 7e-11
Identities = 26/62 (41%), Positives = 43/62 (69%), Gaps = 1/62 (1%)
Query: 8 SALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAIIEGELP 67
S+L L + ++ PV+GF LV+D+++++WEV + GPPDTLY+GG+FKAI++
Sbjct: 1 SSLL-LKKQLADMRRVPVDGFSAGLVDDNDIYKWEVLVIGPPDTLYEGGFFKAILDFPRD 59
Query: 68 HW 69
+
Sbjct: 60 YP 61
>d2z5da1 d.20.1.1 (A:23-174) Ubiquitin conjugating enzyme, UBC
{Human (Homo sapiens), E2 H [TaxId: 9606]}
Length = 152
Score = 71.3 bits (174), Expect = 5e-16
Identities = 21/60 (35%), Positives = 35/60 (58%)
Query: 227 KLVNDDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVYEGT 286
++ L E+ V +GP T Y+GG +K + P YP+ P+I F+ K++HPN+ E +
Sbjct: 21 EVTILGGLNEFVVKFYGPQGTPYEGGVWKVRVDLPDKYPFKSPSIGFMNKIFHPNIDEAS 80
Score = 53.6 bits (128), Expect = 1e-09
Identities = 15/57 (26%), Positives = 23/57 (40%), Gaps = 5/57 (8%)
Query: 7 SSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAIIE 63
S R + + L E E L E+ V +GP T Y+GG +K ++
Sbjct: 2 SPGKRRMDTDVVKLIESKHEVT-----ILGGLNEFVVKFYGPQGTPYEGGVWKVRVD 53
>d1yf9a1 d.20.1.1 (A:13-170) Ubiquitin conjugating enzyme, UBC
{Leishmania major [TaxId: 5664]}
Length = 158
Score = 70.9 bits (173), Expect = 8e-16
Identities = 22/63 (34%), Positives = 34/63 (53%)
Query: 227 KLVNDDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVYEGT 286
K+ D + E+ V GP T Y+ G + H++ P DYP+ P+I F ++ HPNV E +
Sbjct: 18 KVYPSDTVAEFWVEFKGPEGTPYEDGTWMLHVQLPSDYPFKSPSIGFCNRILHPNVDERS 77
Query: 287 AQY 289
Sbjct: 78 GSV 80
Score = 49.0 bits (116), Expect = 6e-08
Identities = 12/64 (18%), Positives = 23/64 (35%), Gaps = 5/64 (7%)
Query: 11 RALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAIIEGELPHWD 70
R M+Y L + + D + E+ V GP T Y+ G + ++ +
Sbjct: 3 RRREMDYMRLCNSTRKVY-----PSDTVAEFWVEFKGPEGTPYEDGTWMLHVQLPSDYPF 57
Query: 71 VNVQ 74
+
Sbjct: 58 KSPS 61
>d2a4da1 d.20.1.1 (A:82-220) Ubiquitin conjugating enzyme, UBC
{Human (Homo sapiens), E2 variant 1 [TaxId: 9606]}
Length = 139
Score = 66.9 bits (163), Expect = 2e-14
Identities = 18/66 (27%), Positives = 31/66 (46%)
Query: 221 FIRFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHP 280
+ + ++ D L W I GPP T+Y+ + ++ YP +PP +RF+TK+
Sbjct: 25 TVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINMN 84
Query: 281 NVYEGT 286
V
Sbjct: 85 GVNSSN 90
Score = 39.6 bits (92), Expect = 7e-05
Identities = 18/65 (27%), Positives = 27/65 (41%), Gaps = 6/65 (9%)
Query: 2 AQVPTSSALRALSMEYKSLQEEPVEGFRVKLVNDD---NLFEWEVAIFGPPDTLYQGGYF 58
+VP + L E + Q+ +G + DD L W I GPP T+Y+ +
Sbjct: 2 VKVPRN---FRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIY 58
Query: 59 KAIIE 63
IE
Sbjct: 59 SLKIE 63
>d1fzya_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's
yeast (Saccharomyces cerevisiae), ubc1 [TaxId: 4932]}
Length = 149
Score = 66.0 bits (160), Expect = 5e-14
Identities = 22/66 (33%), Positives = 39/66 (59%)
Query: 224 FRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVY 283
++ V++ ++ + GPP T Y+GG F ++ P++YP+ PP ++F TKV+HPN+
Sbjct: 21 ITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNIS 80
Query: 284 EGTAQY 289
T
Sbjct: 81 SVTGAI 86
Score = 60.6 bits (146), Expect = 4e-12
Identities = 13/55 (23%), Positives = 29/55 (52%)
Query: 8 SALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAII 62
S + + E ++++++P ++ V++ ++ + GPP T Y+GG F I
Sbjct: 1 SRAKRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDI 55
>d2e2ca_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Clam
(Spisula solidissima), E-2C [TaxId: 6584]}
Length = 156
Score = 65.2 bits (158), Expect = 1e-13
Identities = 26/59 (44%), Positives = 37/59 (62%)
Query: 228 LVNDDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVYEGT 286
+ DNLF+W + GP DT+Y+ +K ++FP DYPY PP ++F T WHPNV +
Sbjct: 32 FPDGDNLFKWVATLDGPKDTVYESLKYKLTLEFPSDYPYKPPVVKFTTPCWHPNVDQSG 90
Score = 57.8 bits (139), Expect = 4e-11
Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Query: 5 PTSSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAII 62
S + L E ++L G + DNLF+W + GP DT+Y+ +K +
Sbjct: 6 ERHSVSKRLQQELRTLLMSGDPGITA-FPDGDNLFKWVATLDGPKDTVYESLKYKLTL 62
>d2a7la1 d.20.1.1 (A:1-117) Ubiquitin-protein ligase W (E2 W) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 117
Score = 64.3 bits (156), Expect = 1e-13
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 230 NDDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVW--HPNVYEGTA 287
+++ +W V + G P TLY+G F+ KF YP+ P + F + HP+VY
Sbjct: 30 VQNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMFTGENIPVHPHVYSNGH 89
Score = 59.7 bits (144), Expect = 4e-12
Identities = 16/64 (25%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Query: 7 SSALRALSMEYKSLQEEPVEGFRVKLVN-DDNLFEWEVAIFGPPDTLYQGGYFKAIIEGE 65
+S + L E +LQ +P G + + +++ +W V + G P TLY+G F+ + +
Sbjct: 2 ASMQKRLQKELLALQNDPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLFKFS 61
Query: 66 LPHW 69
+
Sbjct: 62 SRYP 65
>d1y8xa1 d.20.1.1 (A:27-183) Ubiquitin conjugating enzyme, UBC
{Human (Homo sapiens), E2 M [TaxId: 9606]}
Length = 157
Score = 64.7 bits (157), Expect = 2e-13
Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 226 VKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVY 283
+ + D+L +++ + P + Y+ G F K YP+ PP ++ T V+HPN+
Sbjct: 23 ISFSDPDDLLNFKL-VICPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNID 79
Score = 50.1 bits (119), Expect = 2e-08
Identities = 9/63 (14%), Positives = 23/63 (36%), Gaps = 3/63 (4%)
Query: 7 SSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAIIEGEL 66
S+A + + L + + D+L +++ + P + Y+ G F +
Sbjct: 2 SAAQLRIQKDINELNLPKTCD--ISFSDPDDLLNFKL-VICPDEGFYKSGKFVFSFKVGQ 58
Query: 67 PHW 69
+
Sbjct: 59 GYP 61
>d1z2ua1 d.20.1.1 (A:1-147) Ubiquitin conjugating enzyme, UBC
{Caenorhabditis elegans, E2 2 [TaxId: 6239]}
Length = 147
Score = 63.3 bits (153), Expect = 4e-13
Identities = 25/57 (43%), Positives = 36/57 (63%)
Query: 230 NDDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVYEGT 286
D+LF W+ I GPP++ YQGG F + FP DYP+ PP + F T+++HPN+
Sbjct: 26 VGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNG 82
Score = 46.3 bits (109), Expect = 4e-07
Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 9 ALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAII 62
AL+ + E + L +P V D+LF W+ I GPP++ YQGG F I
Sbjct: 2 ALKRIQKELQDLGRDPPAQCSAGPV-GDDLFHWQATIMGPPESPYQGGVFFLTI 54
>d1y6la_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Human
(Homo sapiens), ubch8 [TaxId: 9606]}
Length = 148
Score = 63.3 bits (153), Expect = 5e-13
Identities = 22/56 (39%), Positives = 34/56 (60%)
Query: 229 VNDDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVYE 284
DN++EW I GPP ++Y+GG F + F DYP+ PP + F T+++H N+
Sbjct: 26 PKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSPDYPFKPPKVTFRTRIYHCNINS 81
Score = 50.2 bits (119), Expect = 2e-08
Identities = 16/68 (23%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
Query: 7 SSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAIIEGEL 66
S++ + + E + +P DN++EW I GPP ++Y+GG F I
Sbjct: 1 STSAKRIQKELAEITLDPPPNCSAG-PKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSP 59
Query: 67 PHWDVNVQ 74
+ +
Sbjct: 60 DYPFKPPK 67
>d1ayza_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's
yeast (Saccharomyces cerevisiae), ubc2 (RAD6) [TaxId:
4932]}
Length = 153
Score = 63.2 bits (153), Expect = 5e-13
Identities = 23/55 (41%), Positives = 35/55 (63%)
Query: 230 NDDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVYE 284
DN+ W I GP DT Y+ G F+ ++F +YP PP ++FL++++HPNVY
Sbjct: 28 LPDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSEMFHPNVYA 82
Score = 51.3 bits (122), Expect = 8e-09
Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 6 TSSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAIIE 63
++ A R L ++K ++E+ G + DN+ W I GP DT Y+ G F+ ++E
Sbjct: 1 STPARRRLMRDFKRMKEDAPPGVSASPL-PDNVMVWNAMIIGPADTPYEDGTFRLLLE 57
>d1jatb_ d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {Baker's
yeast (Saccharomyces cerevisiae), mms2 [TaxId: 4932]}
Length = 136
Score = 61.6 bits (149), Expect = 1e-12
Identities = 16/57 (28%), Positives = 29/57 (50%)
Query: 230 NDDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVYEGT 286
+D + +W I GPP + ++ + + +YP SPP + F++K+ P V T
Sbjct: 33 DDITMTKWNGTILGPPHSNHENRIYSLSIDCGPNYPDSPPKVTFISKINLPCVNPTT 89
Score = 38.1 bits (88), Expect = 2e-04
Identities = 18/109 (16%), Positives = 37/109 (33%), Gaps = 10/109 (9%)
Query: 2 AQVPTSSALRALSMEYKSLQ-EEPVEGFRVKLVNDD--NLFEWEVAIFGPPDTLYQGGYF 58
++VP + L E + + E L + D + +W I GPP + ++ +
Sbjct: 1 SKVPRNFRLLE---ELEKGEKGFGPESCSYGLADSDDITMTKWNGTILGPPHSNHENRIY 57
Query: 59 KAIIEGELPHWD----VNVQNQIENLTKTFEASSFISAPLYTESWLRSF 103
I+ + D V ++I + W R++
Sbjct: 58 SLSIDCGPNYPDSPPKVTFISKINLPCVNPTTGEVQTDFHTLRDWKRAY 106
>d2f4za1 d.20.1.1 (A:32-192) Hypothetical protein Tgtwinscan_2721,
E2 domain {Toxoplasma gondii [TaxId: 5811]}
Length = 161
Score = 62.5 bits (151), Expect = 1e-12
Identities = 24/58 (41%), Positives = 36/58 (62%)
Query: 229 VNDDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVYEGT 286
+ ++ W I GP T Y+GG+F + P DYPY+PP ++F+TK+WHPN+ T
Sbjct: 38 IVGGDIHRWRGFIAGPLGTPYEGGHFTLDIVIPPDYPYNPPKMKFVTKIWHPNISSQT 95
Score = 46.3 bits (109), Expect = 5e-07
Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 1/53 (1%)
Query: 10 LRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAII 62
L+ + G ++V ++ W I GP T Y+GG+F I
Sbjct: 16 LQRAHDSEPAATHSTSHGVSAQIV-GGDIHRWRGFIAGPLGTPYEGGHFTLDI 67
>d1yrva1 d.20.1.1 (A:1-148) Ubiquitin conjugating enzyme, UBC {Human
(Homo sapiens), E2 U [TaxId: 9606]}
Length = 148
Score = 61.7 bits (149), Expect = 2e-12
Identities = 22/60 (36%), Positives = 37/60 (61%)
Query: 230 NDDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVYEGTAQY 289
+++ EWEV I G ++++QG F+ + F +Y Y+PP ++F+T +HPNV T Q
Sbjct: 29 VSEDMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVVKFITIPFHPNVDPHTGQP 88
Score = 60.1 bits (145), Expect = 6e-12
Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Query: 6 TSSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAIIEGE 65
A L ++ L+E +G K V +++ EWEV I G ++++QG F+ I
Sbjct: 2 HGRAYLLLHRDFCDLKENNYKGITAKPV-SEDMMEWEVEIEGLQNSVWQGLVFQLTIHFT 60
Query: 66 LPHW 69
+
Sbjct: 61 SEYN 64
>d1wzva1 d.20.1.1 (A:2-151) Ubiquitin conjugating enzyme, UBC {Human
(Homo sapiens), E2 L6 [TaxId: 9606]}
Length = 150
Score = 61.3 bits (148), Expect = 2e-12
Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Query: 224 FRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVY 283
R +D N+ W + P Y F + FP +YP+ PP I+F TK++HPNV
Sbjct: 20 LRNLSSDDANVLVWHA-LLLPDQPPYHLKAFNLRISFPPEYPFKPPMIKFTTKIYHPNVD 78
Query: 284 EGT 286
E
Sbjct: 79 ENG 81
Score = 52.4 bits (125), Expect = 4e-09
Identities = 13/61 (21%), Positives = 21/61 (34%), Gaps = 1/61 (1%)
Query: 9 ALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAIIEGELPH 68
A + E + LQ++P R +D N+ W + P Y F I +
Sbjct: 1 ASMRVVKELEDLQKKPPPYLRNLSSDDANVLVWHA-LLLPDQPPYHLKAFNLRISFPPEY 59
Query: 69 W 69
Sbjct: 60 P 60
>d2uyza1 d.20.1.1 (A:3-158) Ubiquitin conjugating enzyme, UBC {Human
(Homo sapiens), ubc9 [TaxId: 9606]}
Length = 156
Score = 60.6 bits (146), Expect = 4e-12
Identities = 26/55 (47%), Positives = 31/55 (56%)
Query: 230 NDDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVYE 284
NL WE AI G T ++GG FK M F DYP SPP +F ++HPNVY
Sbjct: 32 GTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYP 86
Score = 57.1 bits (137), Expect = 9e-11
Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 4/65 (6%)
Query: 9 ALRALSMEYKSLQEEPVEGFRVKLVND----DNLFEWEVAIFGPPDTLYQGGYFKAIIEG 64
AL L+ E K+ +++ GF + NL WE AI G T ++GG FK +
Sbjct: 3 ALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLF 62
Query: 65 ELPHW 69
+ +
Sbjct: 63 KDDYP 67
>d2ucza_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's
yeast (Saccharomyces cerevisiae), ubc7 [TaxId: 4932]}
Length = 164
Score = 60.6 bits (146), Expect = 6e-12
Identities = 26/64 (40%), Positives = 36/64 (56%)
Query: 224 FRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVY 283
+++N+F W+ I GPPDT Y G F A ++FP DYP SPP + F + HPN+Y
Sbjct: 23 IVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFPKDYPLSPPKLTFTPSILHPNIY 82
Query: 284 EGTA 287
Sbjct: 83 PNGE 86
Score = 50.6 bits (120), Expect = 2e-08
Identities = 17/53 (32%), Positives = 28/53 (52%)
Query: 6 TSSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYF 58
+ +A + L E + L ++ G +++N+F W+ I GPPDT Y G F
Sbjct: 1 SKTAQKRLLKELQQLIKDSPPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVF 53
>d1jata_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's
yeast (Saccharomyces cerevisiae), ubc13 [TaxId: 4932]}
Length = 152
Score = 59.4 bits (143), Expect = 1e-11
Identities = 24/56 (42%), Positives = 35/56 (62%)
Query: 229 VNDDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVYE 284
+DDNL ++V I GP + Y+ G F+ + P DYP P +RFLTK++HPN+
Sbjct: 27 PHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPNIDR 82
Score = 45.9 bits (108), Expect = 6e-07
Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 7 SSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAII 62
+S + + E + L +PV G + +DDNL ++V I GP + Y+ G F+ +
Sbjct: 2 ASLPKRIIKETEKLVSDPVPGITAEP-HDDNLRYFQVTIEGPEQSPYEDGIFELEL 56
>d1c4zd_ d.20.1.1 (D:) Ubiquitin conjugating enzyme, UBC {Human
(Homo sapiens), ubch7 [TaxId: 9606]}
Length = 144
Score = 58.6 bits (141), Expect = 2e-11
Identities = 24/60 (40%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 224 FRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVY 283
FR V++ NL W+ I P + Y G F+ + FP +YP+ PP I F TK++HPN+
Sbjct: 19 FRNIQVDEANLLTWQGLI-VPDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNID 77
Score = 52.1 bits (124), Expect = 3e-09
Identities = 15/59 (25%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Query: 11 RALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAIIEGELPHW 69
R L E + +++ ++ FR V++ NL W+ I P + Y G F+ I +
Sbjct: 2 RRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLI-VPDNPPYDKGAFRIEINFPAEYP 59
>d2bepa1 d.20.1.1 (A:1-154) Ubiquitin-conjugating enzyme E2-25 kDa,
E2 domain {Cow (Bos taurus) [TaxId: 9913]}
Length = 154
Score = 58.7 bits (141), Expect = 2e-11
Identities = 27/58 (46%), Positives = 39/58 (67%)
Query: 229 VNDDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVYEGT 286
+ D+N E I GPPDT Y+GG ++ +K P YP++PP +RF+TK+WHPN+ T
Sbjct: 31 LVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVT 88
Score = 46.7 bits (110), Expect = 3e-07
Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
Query: 6 TSSALRALSMEYKSLQ---EEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAII 62
+ A++ + E+K + E +V LV D+N E I GPPDT Y+GG ++ I
Sbjct: 2 ANIAVQRIKREFKEVLKSEETSKNQIKVDLV-DENFTELRGEIAGPPDTPYEGGRYQLEI 60
Query: 63 EGELPHW 69
+ +
Sbjct: 61 KIPETYP 67
>d1s1qa_ d.20.1.2 (A:) Tumor susceptibility gene 101 (TSG101) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 141
Score = 56.5 bits (136), Expect = 9e-11
Identities = 11/62 (17%), Positives = 19/62 (30%), Gaps = 7/62 (11%)
Query: 229 VNDDNLFEWEVAIFGPPDTLYQGGYFKAHMK--FPIDYPYSPPTIRFLTK-----VWHPN 281
V +D + + G Y+G + + YPY+PP +
Sbjct: 41 VFNDGSSRELMNLTGTIPVPYRGNTYNIPICLWLLDTYPYNPPICFVKPTSSMTIKTGKH 100
Query: 282 VY 283
V
Sbjct: 101 VD 102
Score = 36.5 bits (84), Expect = 0.001
Identities = 7/36 (19%), Positives = 12/36 (33%)
Query: 33 VNDDNLFEWEVAIFGPPDTLYQGGYFKAIIEGELPH 68
V +D + + G Y+G + I L
Sbjct: 41 VFNDGSSRELMNLTGTIPVPYRGNTYNIPICLWLLD 76
>d1j7db_ d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {Human
(Homo sapiens), ubc13 [TaxId: 9606]}
Length = 149
Score = 55.9 bits (134), Expect = 2e-10
Identities = 22/56 (39%), Positives = 36/56 (64%)
Query: 229 VNDDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVYE 284
++ N + V I GP D+ ++GG FK + P +YP + P +RF+TK++HPNV +
Sbjct: 26 PDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDK 81
Score = 47.1 bits (111), Expect = 3e-07
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 7 SSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAII 62
+ R + E + L EPV G + + ++ N + V I GP D+ ++GG FK +
Sbjct: 1 AGLPRRIIKETQRLLAEPVPGIKAE-PDESNARYFHVVIAGPQDSPFEGGTFKLEL 55
>d2fo3a1 d.20.1.1 (A:9-117) Putative ubiquitin-conjugating enzyme,
E2 domain {Plasmodium chabaudi [TaxId: 5825]}
Length = 109
Score = 54.7 bits (131), Expect = 3e-10
Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 229 VNDDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKV-WHPNVYEGTA 287
V+ +N+ W V G +T+Y +K + FP DYP PP + FL K H +VY
Sbjct: 22 VHPNNIRIWIVKYVGLENTIYANEVYKLKIIFPDDYPLKPPIVYFLQKPPKHTHVYSNGD 81
Score = 51.6 bits (123), Expect = 2e-09
Identities = 11/58 (18%), Positives = 21/58 (36%), Gaps = 1/58 (1%)
Query: 13 LSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAIIEGELPHWD 70
+ E + P + V+ +N+ W V G +T+Y +K I +
Sbjct: 3 IQKELHNFLNNPPINCTLD-VHPNNIRIWIVKYVGLENTIYANEVYKLKIIFPDDYPL 59
>d1yh2a1 d.20.1.1 (A:1-154) Ubiquitin conjugating enzyme, UBC {Human
(Homo sapiens), E2 T [TaxId: 9606]}
Length = 154
Score = 53.7 bits (128), Expect = 1e-09
Identities = 21/61 (34%), Positives = 31/61 (50%)
Query: 229 VNDDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVYEGTAQ 288
+ D + + I G +T Y+ G FK + P YP+ PP IRFLT ++HPN+
Sbjct: 26 QDKDQMDDLRAQILGGANTPYEKGVFKLEVIIPERYPFEPPQIRFLTPIYHPNIDSAGRI 85
Query: 289 Y 289
Sbjct: 86 C 86
Score = 46.0 bits (108), Expect = 6e-07
Identities = 14/62 (22%), Positives = 21/62 (33%), Gaps = 1/62 (1%)
Query: 8 SALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAIIEGELP 67
L E L EP G + D + + I G +T Y+ G FK +
Sbjct: 2 QRASRLKRELHMLATEPPPGITCW-QDKDQMDDLRAQILGGANTPYEKGVFKLEVIIPER 60
Query: 68 HW 69
+
Sbjct: 61 YP 62
>d1i7ka_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Human
(Homo sapiens), ubch10 [TaxId: 9606]}
Length = 146
Score = 53.2 bits (127), Expect = 2e-09
Identities = 24/55 (43%), Positives = 34/55 (61%)
Query: 230 NDDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVYE 284
DNLF+W I G T+Y+ +K ++FP YPY+ PT++FLT +HPNV
Sbjct: 26 ESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPNVDT 80
Score = 47.5 bits (112), Expect = 2e-07
Identities = 15/69 (21%), Positives = 25/69 (36%), Gaps = 1/69 (1%)
Query: 9 ALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAIIEGELPH 68
+ L E +L +G DNLF+W I G T+Y+ +K +E +
Sbjct: 2 VGKRLQQELMTLMMSGDKGISAF-PESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGY 60
Query: 69 WDVNVQNQI 77
+
Sbjct: 61 PYNAPTVKF 69
>d1zdna1 d.20.1.1 (A:6-156) Ubiquitin conjugating enzyme, UBC
{Human(Homo sapiens), E2 S [TaxId: 9606]}
Length = 151
Score = 53.2 bits (127), Expect = 2e-09
Identities = 24/62 (38%), Positives = 34/62 (54%)
Query: 228 LVNDDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVYEGTA 287
N+++L + +V I GP T Y GG F+ + D+P SPP FLTK++HPNV
Sbjct: 29 FPNEEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPKGYFLTKIFHPNVGANGE 88
Query: 288 QY 289
Sbjct: 89 IC 90
Score = 46.7 bits (110), Expect = 4e-07
Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 7 SSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAII 62
+R + E +L +P +G +V N+++L + +V I GP T Y GG F+ +
Sbjct: 5 PHIIRLVYKEVTTLTADPPDGIKVF-PNEEDLTDLQVTIEGPEGTPYAGGLFRMKL 59
>d1z3da1 d.20.1.1 (A:2-150) Ubiquitin conjugating enzyme, UBC
{Nematode (Caenorhabditis elegans), E2-21.5 kDa [TaxId:
6239]}
Length = 149
Score = 53.2 bits (127), Expect = 2e-09
Identities = 25/55 (45%), Positives = 39/55 (70%)
Query: 230 NDDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVYE 284
+DN+ WE IFGP +T ++ G FK ++F +YP PPT++F++K++HPNVY
Sbjct: 28 TEDNILTWEAIIFGPQETPFEDGTFKLSLEFTEEYPNKPPTVKFISKMFHPNVYA 82
Score = 52.1 bits (124), Expect = 5e-09
Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Query: 6 TSSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAIIEGE 65
T+ + R L ++K LQE+P G +DN+ WE IFGP +T ++ G FK +E
Sbjct: 1 TTPSRRRLMRDFKKLQEDPPAGVSGAP-TEDNILTWEAIIFGPQETPFEDGTFKLSLEFT 59
Query: 66 LPHW 69
+
Sbjct: 60 EEYP 63
>d2f4wa1 d.20.1.1 (A:12-168) Ubiquitin conjugating enzyme, UBC
{Human (Homo sapiens), E2 J2 [TaxId: 9606]}
Length = 157
Score = 52.1 bits (124), Expect = 5e-09
Identities = 17/53 (32%), Positives = 27/53 (50%)
Query: 230 NDDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNV 282
N+ EW + GP T Y+GGY+ + FP ++P+ PP+I +T
Sbjct: 26 LPSNILEWHYVVRGPEMTPYEGGYYHGKLIFPREFPFKPPSIYMITPNGRFKC 78
Score = 50.5 bits (120), Expect = 1e-08
Identities = 15/62 (24%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Query: 8 SALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAIIEGELP 67
+A + L +Y ++++PV + + N+ EW + GP T Y+GGY+ +
Sbjct: 1 TATQRLKQDYLRIKKDPVPYICAEPL-PSNILEWHYVVRGPEMTPYEGGYYHGKLIFPRE 59
Query: 68 HW 69
Sbjct: 60 FP 61
>d1zuoa1 d.20.1.1 (A:201-362) Ubiquitin-conjugating enzyme E2 Q2,
C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 162
Score = 46.8 bits (110), Expect = 4e-07
Identities = 14/72 (19%), Positives = 27/72 (37%), Gaps = 12/72 (16%)
Query: 229 VNDDNLFEWEVAIFG-PPDTLYQGG-----------YFKAHMKFPIDYPYSPPTIRFLTK 276
+ +D+L++W V + PD+ Y + F ++P+ PP +R +
Sbjct: 31 LINDSLYDWHVKLQKVDPDSPLHSDLQILKEKEGIEYILLNFSFKDNFPFDPPFVRVVLP 90
Query: 277 VWHPNVYEGTAQ 288
V G
Sbjct: 91 VLSGGYVLGGGA 102
Score = 39.8 bits (92), Expect = 9e-05
Identities = 11/72 (15%), Positives = 25/72 (34%), Gaps = 3/72 (4%)
Query: 6 TSSALRALSMEYKSLQEEPVE--GFRVKLVNDDNLFEWEVAIFG-PPDTLYQGGYFKAII 62
+ A L E + + G + +D+L++W V + PD+
Sbjct: 2 SVQASDRLMKELRDIYRSQSYKTGIYSVELINDSLYDWHVKLQKVDPDSPLHSDLQILKE 61
Query: 63 EGELPHWDVNVQ 74
+ + + +N
Sbjct: 62 KEGIEYILLNFS 73
>d1uzxa_ d.20.1.2 (A:) Vacuolar protein sorting-associated {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 152
Score = 40.4 bits (94), Expect = 6e-05
Identities = 12/71 (16%), Positives = 20/71 (28%), Gaps = 14/71 (19%)
Query: 227 KLVNDDNLFEWEVAIFGPPDTLYQGG---YFKAHMKFPIDYPYSPPTIRFLTKVW----- 278
+ D + ++I+G T G M P YP PP I + +
Sbjct: 44 VFTHSDGTPQLLLSIYGTISTGEDGSSPHSIPVIMWVPSMYPVKPPFISINLENFDMNTI 103
Query: 279 ------HPNVY 283
+
Sbjct: 104 SSSLPIQEYID 114
>d1ygpa_ c.87.1.4 (A:) Glycogen phosphorylase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 876
Score = 28.1 bits (62), Expect = 1.5
Identities = 44/209 (21%), Positives = 64/209 (30%), Gaps = 24/209 (11%)
Query: 52 LYQGGYFK-AIIEG---ELP-HWDVNVQN--QIENLTKTFEASSFISAPLYTESWLRSFV 104
Y+ G F II+G E P +W + N +IE + +
Sbjct: 187 RYEYGIFAQKIIDGYQVETPDYWLNS-GNPWEIERNEVQIPVTFYGYVDRPEGGKTTLSA 245
Query: 105 SYVRRNQDFLNVTIDTREGFLKTLN----DLWLFKP-NPFSLDIKFNDDGTKIIASRFMI 159
S + L V D KT N LW +P F L+ N D +A
Sbjct: 246 SQWIGGERVLAVAYDFPVPGFKTSNVNNLRLWQARPTTEFDLNKFNNGDYKNSVAQ--QQ 303
Query: 160 QAVNITD---GNMEKEMVKELRRIAH----ESSLNVSVFHPYFVFFDQFELVRPTTIQSM 212
+A +IT N KELR +SL+ + E IQ
Sbjct: 304 RAESITAVLYPNDNFAQGKELRLKQQYFWCAASLHDILRRFKKSKRPWTEFPDQVAIQLN 363
Query: 213 LGGSVTMMFIRFRVKLVNDDNLFEWEVAI 241
+ R ++ D +W A
Sbjct: 364 DTHPTLAIVELQR--VLVDLEKLDWHEAW 390
>d1yu0a2 d.169.1.8 (A:171-380) Major tropism determinant (Mtd),
C-terminal domain {Bordetella phage bpp-1 [TaxId:
194699]}
Length = 210
Score = 26.4 bits (57), Expect = 3.7
Identities = 6/58 (10%), Positives = 17/58 (29%), Gaps = 3/58 (5%)
Query: 235 FEWEVAIFGPPDTLYQGGYFKAHMKFPIDYP---YSPPTIRFLTKVWHPNVYEGTAQY 289
E++ FG + GG ++ T ++ ++ ++
Sbjct: 86 NEFQALAFGTTEATSSGGTDVPTTGVNGTGATSAWNIFTSKWGVVQASGCLWTWGNEF 143
>d2b30a1 c.108.1.10 (A:18-300) PFL1270w orthologue {Plasmodium vivax
[TaxId: 5855]}
Length = 283
Score = 25.3 bits (54), Expect = 8.6
Identities = 14/181 (7%), Positives = 51/181 (28%)
Query: 57 YFKAIIEGELPHWDVNVQNQIENLTKTFEASSFISAPLYTESWLRSFVSYVRRNQDFLNV 116
F ++ + + + + + + T+ + V +N +
Sbjct: 61 AFGEENLKKMNFYGMPGVYINGTIVYDQIGYTLLDETIETDVYAELISYLVEKNLVNQTI 120
Query: 117 TIDTREGFLKTLNDLWLFKPNPFSLDIKFNDDGTKIIASRFMIQAVNITDGNMEKEMVKE 176
++ N F +S + +++ R M + + + D + K ++
Sbjct: 121 FHRGESNYVTEDNKYADFLQKMYSENRSIIIRHNEMLKYRTMNKLMIVLDPSESKTVIGN 180
Query: 177 LRRIAHESSLNVSVFHPYFVFFDQFELVRPTTIQSMLGGSVTMMFIRFRVKLVNDDNLFE 236
L++ + ++ + + +++ + ND +
Sbjct: 181 LKQKFKNKLTIFTTYNGHAEVTKLGHDKYTGINYLLKHYNISNDQVLVVGDAENDIAMLS 240
Query: 237 W 237
Sbjct: 241 N 241
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.139 0.424
Gapped
Lambda K H
0.267 0.0521 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,139,065
Number of extensions: 54597
Number of successful extensions: 204
Number of sequences better than 10.0: 1
Number of HSP's gapped: 186
Number of HSP's successfully gapped: 68
Length of query: 289
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 205
Effective length of database: 1,254,276
Effective search space: 257126580
Effective search space used: 257126580
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.3 bits)