BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6213
(330 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/224 (23%), Positives = 102/224 (45%), Gaps = 24/224 (10%)
Query: 57 VAWSCIEENHIATGATNGAVVVWNLGQISRSKQ----ERVFNDHKRTVNKVSFHYVESNW 112
++W+ H+ + + + + +W++ + + + + +F H V VS+H + +
Sbjct: 183 LSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHESL 242
Query: 113 LISGSQDGTMRLFDIRCQESTKIFHS---NTESVRDVEFNPHSPYAFASVSENGTIQQWD 169
S + D + ++D R ++K HS +T V + FNP+S + A+ S + T+ WD
Sbjct: 243 FGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWD 302
Query: 170 VRRPEKCFYQFTAHSGPIFACDWHPEH-AWLATASRDKTIKVWDLSI------------- 215
+R + + F +H IF W P + LA++ D+ + VWDLS
Sbjct: 303 LRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAEDG 362
Query: 216 KPSLEY-SINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDI 258
P L + A +S W P + + CS+ D+ + VW +
Sbjct: 363 PPELLFIHGGHTAKISDFSWNPNEPWVI--CSVSEDNIMQVWQM 404
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/174 (22%), Positives = 79/174 (45%), Gaps = 15/174 (8%)
Query: 56 DVAWSCIEENHIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLIS 115
DV+W + E+ + A + +++W+ + SK + H VN +SF+ L +
Sbjct: 232 DVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILAT 291
Query: 116 GSQDGTMRLFDIR-CQESTKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRR-- 172
GS D T+ L+D+R + F S+ + + V+++PH+ AS + + WD+ +
Sbjct: 292 GSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIG 351
Query: 173 -----------PEKCFYQFTAHSGPIFACDWHPEHAW-LATASRDKTIKVWDLS 214
P + + H+ I W+P W + + S D ++VW ++
Sbjct: 352 EEQSPEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQVWQMA 405
Score = 54.3 bits (129), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 73/157 (46%), Gaps = 14/157 (8%)
Query: 146 VEFNPHSPYAFASVSENGTIQQWDVRRPEK------CFYQFTAHSGPIFACDWHPEHAWL 199
+ +NP+ S S++ TI WD+ K FT H+ + WH H L
Sbjct: 183 LSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHESL 242
Query: 200 -ATASRDKTIKVWDL----SIKPSLEYSINTIASVSRIKWRPQRKFHLASCSLVVDSSVN 254
+ + D+ + +WD + KPS +T A V+ + + P +F LA+ S D +V
Sbjct: 243 FGSVADDQKLMIWDTRSNNTSKPSHSVDAHT-AEVNCLSFNPYSEFILATGS--ADKTVA 299
Query: 255 VWDIRRPYIPLASFTEHKDVVSGLAWRGDPQLFIASS 291
+WD+R + L SF HKD + + W + +ASS
Sbjct: 300 LWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASS 336
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 74.3 bits (181), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 61/202 (30%), Positives = 98/202 (48%), Gaps = 17/202 (8%)
Query: 84 ISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSNTESV 143
I R ++ + H+ V +V FH V S ++S S+D T++++D + + +T+SV
Sbjct: 95 IPRPPEKYALSGHRSPVTRVIFHPVFSV-MVSASEDATIKVWDYETGDFERTLKGHTDSV 153
Query: 144 RDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATAS 203
+D+ F+ HS AS S + TI+ WD + E C H + + P + +AS
Sbjct: 154 QDISFD-HSGKLLASCSADMTIKLWDFQGFE-CIRTMHGHDHNVSSVSIMPNGDHIVSAS 211
Query: 204 RDKTIKVWDLSIKPSLEYSINTIASVSRIKW----RPQRKFHL-ASCSLVVDSSVNVWDI 258
RDKTIK+W++ Y + T +W RP + L ASCS D +V VW +
Sbjct: 212 RDKTIKMWEVQTG----YCVKTF--TGHREWVRMVRPNQDGTLIASCS--NDQTVRVWVV 263
Query: 259 RRPYIPLASFTEHKDVVSGLAW 280
A EH+ VV ++W
Sbjct: 264 ATKECK-AELREHRHVVECISW 284
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 52/208 (25%), Positives = 86/208 (41%), Gaps = 27/208 (12%)
Query: 91 RVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNP 150
R + H V+ VS + ++S S+D T+++++++ K F + E VR V N
Sbjct: 186 RTMHGHDHNVSSVSI-MPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQ 244
Query: 151 HSPYAFASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAW------------ 198
AS S + T++ W V E C + H + W PE ++
Sbjct: 245 DGTL-IASCSNDQTVRVWVVATKE-CKAELREHRHVVECISWAPESSYSSISEATGSETK 302
Query: 199 --------LATASRDKTIKVWDLSIKPSLEYSINTIASVSRIKWRPQRKFHLASCSLVVD 250
L + SRDKTIK+WD+S L + V + + KF L S D
Sbjct: 303 KSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFIL---SCADD 359
Query: 251 SSVNVWDIRRPYIPLASFTEHKDVVSGL 278
++ VWD + + + H+ V+ L
Sbjct: 360 KTLRVWDYKNKRC-MKTLNAHEHFVTSL 386
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 54/101 (53%), Gaps = 2/101 (1%)
Query: 112 WLISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVR 171
+L+SGS+D T++++D+ + VR V F+ + S +++ T++ WD +
Sbjct: 310 FLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFIL-SCADDKTLRVWDYK 368
Query: 172 RPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWD 212
++C AH + + D+H ++ T S D+T+KVW+
Sbjct: 369 N-KRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 408
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 56/133 (42%), Gaps = 11/133 (8%)
Query: 127 IRCQESTKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFTAHSGP 186
IR Q+ S ++ EF P + + ++W R PEK Y + H P
Sbjct: 59 IRLQKKVMELESKLNEAKE-EFTSGGP-----LGQKRDPKEWIPRPPEK--YALSGHRSP 110
Query: 187 IFACDWHPEHAWLATASRDKTIKVWDLSIKPSLEYSINTIASVSRIKWRPQRKFHLASCS 246
+ +HP + + +AS D TIKVWD SV I + K LASCS
Sbjct: 111 VTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKL-LASCS 169
Query: 247 LVVDSSVNVWDIR 259
D ++ +WD +
Sbjct: 170 --ADMTIKLWDFQ 180
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 54/226 (23%), Positives = 103/226 (45%), Gaps = 28/226 (12%)
Query: 57 VAWSCIEENHIATGATNGAVVVWNL------GQISRSKQERVFNDHKRTVNKVSFHYVES 110
++W+ H+ + + + V +W++ G+I +K +F H V V++H +
Sbjct: 185 LSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKA--IFTGHSAVVEDVAWHLLHE 242
Query: 111 NWLISGSQDGTMRLFDIRCQESTKIFH---SNTESVRDVEFNPHSPYAFASVSENGTIQQ 167
+ S + D + ++D R ++K H ++T V + FNP+S + A+ S + T+
Sbjct: 243 SLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVAL 302
Query: 168 WDVRRPEKCFYQFTAHSGPIFACDWHPEH-AWLATASRDKTIKVWDLSI----------- 215
WD+R + + F +H IF W P + LA++ D+ + VWDLS
Sbjct: 303 WDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAE 362
Query: 216 --KPSLEY-SINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDI 258
P L + A +S W P + + CS+ D+ + +W +
Sbjct: 363 DGPPELLFIHGGHTAKISDFSWNPNEPWVI--CSVSEDNIMQIWQM 406
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 40/174 (22%), Positives = 79/174 (45%), Gaps = 15/174 (8%)
Query: 56 DVAWSCIEENHIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLIS 115
DVAW + E+ + A + +++W+ + SK + + H VN +SF+ L +
Sbjct: 234 DVAWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILAT 293
Query: 116 GSQDGTMRLFDIR-CQESTKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRR-- 172
GS D T+ L+D+R + F S+ + + V ++PH+ AS + + WD+ +
Sbjct: 294 GSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIG 353
Query: 173 -----------PEKCFYQFTAHSGPIFACDWHPEHAW-LATASRDKTIKVWDLS 214
P + + H+ I W+P W + + S D +++W ++
Sbjct: 354 EEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIWQMA 407
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 68/147 (46%), Gaps = 14/147 (9%)
Query: 156 FASVSENGTIQQWDVRRPEK------CFYQFTAHSGPIFACDWHPEHAWL-ATASRDKTI 208
S S++ T+ WD+ K FT HS + WH H L + + D+ +
Sbjct: 195 LLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQKL 254
Query: 209 KVWDL----SIKPSLEYSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIP 264
+WD + KPS +T A V+ + + P +F LA+ S D +V +WD+R +
Sbjct: 255 MIWDTRSNTTSKPSHLVDAHT-AEVNCLSFNPYSEFILATGS--ADKTVALWDLRNLKLK 311
Query: 265 LASFTEHKDVVSGLAWRGDPQLFIASS 291
L +F HKD + + W + +ASS
Sbjct: 312 LHTFESHKDEIFQVHWSPHNETILASS 338
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 71.6 bits (174), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 54/224 (24%), Positives = 101/224 (45%), Gaps = 28/224 (12%)
Query: 57 VAWSCIEENHIATGATNGAVVVWNL------GQISRSKQERVFNDHKRTVNKVSFHYVES 110
++W+ H+ + + + V +W++ G+I +K +F H V V++H +
Sbjct: 185 LSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKA--IFTGHSAVVEDVAWHLLHE 242
Query: 111 NWLISGSQDGTMRLFDIRCQESTKIFH---SNTESVRDVEFNPHSPYAFASVSENGTIQQ 167
+ S + D + ++D R ++K H ++T V + FNP+S + A+ S + T+
Sbjct: 243 SLFGSVADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVAL 302
Query: 168 WDVRRPEKCFYQFTAHSGPIFACDWHPEH-AWLATASRDKTIKVWDLSI----------- 215
WD+R + + F +H IF W P + LA++ D+ + VWDLS
Sbjct: 303 WDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAE 362
Query: 216 --KPSLEY-SINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVW 256
P L + A +S W P + + CS+ D+ +W
Sbjct: 363 DGPPELLFIHGGHTAKISDFSWNPNEPWVI--CSVSEDNIXQIW 404
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 40/171 (23%), Positives = 75/171 (43%), Gaps = 15/171 (8%)
Query: 56 DVAWSCIEENHIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLIS 115
DVAW + E+ + A + + +W+ + SK + + H VN +SF+ L +
Sbjct: 234 DVAWHLLHESLFGSVADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILAT 293
Query: 116 GSQDGTMRLFDIR-CQESTKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRR-- 172
GS D T+ L+D+R + F S+ + + V ++PH+ AS + + WD+ +
Sbjct: 294 GSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIG 353
Query: 173 -----------PEKCFYQFTAHSGPIFACDWHPEHAW-LATASRDKTIKVW 211
P + + H+ I W+P W + + S D ++W
Sbjct: 354 EEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIXQIW 404
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 68/145 (46%), Gaps = 14/145 (9%)
Query: 158 SVSENGTIQQWDVRRPEK------CFYQFTAHSGPIFACDWHPEHAWL-ATASRDKTIKV 210
S S++ T+ WD+ K FT HS + WH H L + + D+ + +
Sbjct: 197 SASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQKLXI 256
Query: 211 WDL----SIKPSLEYSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLA 266
WD + KPS +T A V+ + + P +F LA+ S D +V +WD+R + L
Sbjct: 257 WDTRSNTTSKPSHLVDAHT-AEVNCLSFNPYSEFILATGS--ADKTVALWDLRNLKLKLH 313
Query: 267 SFTEHKDVVSGLAWRGDPQLFIASS 291
+F HKD + + W + +ASS
Sbjct: 314 TFESHKDEIFQVHWSPHNETILASS 338
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 71.2 bits (173), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 54/242 (22%), Positives = 105/242 (43%), Gaps = 33/242 (13%)
Query: 57 VAWSCIEENHIATGATNGAVVVWNLGQISRSKQ----ERVFNDHKRTVNKVSFHYVESNW 112
++W+ ++ + + + + +W++ + + + +F H V V++H + +
Sbjct: 189 LSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESL 248
Query: 113 LISGSQDGTMRLFDIRCQESTKIFHS---NTESVRDVEFNPHSPYAFASVSENGTIQQWD 169
S + D + ++D R ++K H+ +T V + FNP+S + A+ S + T+ WD
Sbjct: 249 FGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWD 308
Query: 170 VRRPEKCFYQFTAHSGPIFACDWHPEH-AWLATASRDKTIKVWDLSIKPSLEYSINT--- 225
+R + + F +H IF W P + LA++ D+ + VWDLS K E S
Sbjct: 309 LRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLS-KIGEEQSTEDAED 367
Query: 226 ------------IASVSRIKWRPQRKFHLASCSLVVDSSVNVWDI-------RRPYIPLA 266
A +S W P + + CS+ D+ + VW + P IP +
Sbjct: 368 GPPELLFIHGGHTAKISDFSWNPNEPWII--CSVSEDNIMQVWQMAENVYNDEEPEIPAS 425
Query: 267 SF 268
Sbjct: 426 EL 427
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 79/174 (45%), Gaps = 15/174 (8%)
Query: 56 DVAWSCIEENHIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLIS 115
DVAW + E+ + A + +++W+ + SK + H VN +SF+ L +
Sbjct: 238 DVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILAT 297
Query: 116 GSQDGTMRLFDIR-CQESTKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRR-- 172
GS D T+ L+D+R + F S+ + + V+++PH+ AS + + WD+ +
Sbjct: 298 GSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIG 357
Query: 173 -----------PEKCFYQFTAHSGPIFACDWHPEHAW-LATASRDKTIKVWDLS 214
P + + H+ I W+P W + + S D ++VW ++
Sbjct: 358 EEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMA 411
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 78/175 (44%), Gaps = 15/175 (8%)
Query: 128 RCQESTKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEK------CFYQFT 181
CQ ++ E + +NP+ S S++ TI WD+ K FT
Sbjct: 172 ECQPDLRLRGHQKEGYG-LSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFT 230
Query: 182 AHSGPIFACDWHPEHAWL-ATASRDKTIKVWDL----SIKPSLEYSINTIASVSRIKWRP 236
H+ + WH H L + + D+ + +WD + KPS +T A V+ + + P
Sbjct: 231 GHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHT-AEVNCLSFNP 289
Query: 237 QRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTEHKDVVSGLAWRGDPQLFIASS 291
+F LA+ S D +V +WD+R + L SF HKD + + W + +ASS
Sbjct: 290 YSEFILATGS--ADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASS 342
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 71.2 bits (173), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 54/242 (22%), Positives = 105/242 (43%), Gaps = 33/242 (13%)
Query: 57 VAWSCIEENHIATGATNGAVVVWNLGQISRSKQ----ERVFNDHKRTVNKVSFHYVESNW 112
++W+ ++ + + + + +W++ + + + +F H V V++H + +
Sbjct: 187 LSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESL 246
Query: 113 LISGSQDGTMRLFDIRCQESTKIFHS---NTESVRDVEFNPHSPYAFASVSENGTIQQWD 169
S + D + ++D R ++K H+ +T V + FNP+S + A+ S + T+ WD
Sbjct: 247 FGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWD 306
Query: 170 VRRPEKCFYQFTAHSGPIFACDWHPEH-AWLATASRDKTIKVWDLSIKPSLEYSINT--- 225
+R + + F +H IF W P + LA++ D+ + VWDLS K E S
Sbjct: 307 LRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLS-KIGEEQSTEDAED 365
Query: 226 ------------IASVSRIKWRPQRKFHLASCSLVVDSSVNVWDI-------RRPYIPLA 266
A +S W P + + CS+ D+ + VW + P IP +
Sbjct: 366 GPPELLFIHGGHTAKISDFSWNPNEPWII--CSVSEDNIMQVWQMAENVYNDEEPEIPAS 423
Query: 267 SF 268
Sbjct: 424 EL 425
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 79/174 (45%), Gaps = 15/174 (8%)
Query: 56 DVAWSCIEENHIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLIS 115
DVAW + E+ + A + +++W+ + SK + H VN +SF+ L +
Sbjct: 236 DVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILAT 295
Query: 116 GSQDGTMRLFDIR-CQESTKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRR-- 172
GS D T+ L+D+R + F S+ + + V+++PH+ AS + + WD+ +
Sbjct: 296 GSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIG 355
Query: 173 -----------PEKCFYQFTAHSGPIFACDWHPEHAW-LATASRDKTIKVWDLS 214
P + + H+ I W+P W + + S D ++VW ++
Sbjct: 356 EEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMA 409
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 78/175 (44%), Gaps = 15/175 (8%)
Query: 128 RCQESTKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEK------CFYQFT 181
CQ ++ E + +NP+ S S++ TI WD+ K FT
Sbjct: 170 ECQPDLRLRGHQKEGYG-LSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFT 228
Query: 182 AHSGPIFACDWHPEHAWL-ATASRDKTIKVWDL----SIKPSLEYSINTIASVSRIKWRP 236
H+ + WH H L + + D+ + +WD + KPS +T A V+ + + P
Sbjct: 229 GHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHT-AEVNCLSFNP 287
Query: 237 QRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTEHKDVVSGLAWRGDPQLFIASS 291
+F LA+ S D +V +WD+R + L SF HKD + + W + +ASS
Sbjct: 288 YSEFILATGS--ADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASS 340
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 51/225 (22%), Positives = 101/225 (44%), Gaps = 26/225 (11%)
Query: 57 VAWSCIEENHIATGATNGAVVVWNLGQISRSKQ----ERVFNDHKRTVNKVSFHYVESNW 112
++W+ ++ + + + + +W++ + + + +F H V V++H + +
Sbjct: 191 LSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESL 250
Query: 113 LISGSQDGTMRLFDIRCQESTKIFHS---NTESVRDVEFNPHSPYAFASVSENGTIQQWD 169
S + D + ++D R ++K H+ +T V + FNP+S + A+ S + T+ WD
Sbjct: 251 FGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWD 310
Query: 170 VRRPEKCFYQFTAHSGPIFACDWHPEH-AWLATASRDKTIKVWDLSIKPSLEYSINT--- 225
+R + + F +H IF W P + LA++ D+ + VWDLS K E S
Sbjct: 311 LRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLS-KIGEEQSTEDAED 369
Query: 226 ------------IASVSRIKWRPQRKFHLASCSLVVDSSVNVWDI 258
A +S W P + + CS+ D+ + VW +
Sbjct: 370 GPPELLFIHGGHTAKISDFSWNPNEPWII--CSVSEDNIMQVWQM 412
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 79/174 (45%), Gaps = 15/174 (8%)
Query: 56 DVAWSCIEENHIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLIS 115
DVAW + E+ + A + +++W+ + SK + H VN +SF+ L +
Sbjct: 240 DVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILAT 299
Query: 116 GSQDGTMRLFDIR-CQESTKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRR-- 172
GS D T+ L+D+R + F S+ + + V+++PH+ AS + + WD+ +
Sbjct: 300 GSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIG 359
Query: 173 -----------PEKCFYQFTAHSGPIFACDWHPEHAW-LATASRDKTIKVWDLS 214
P + + H+ I W+P W + + S D ++VW ++
Sbjct: 360 EEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMA 413
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 78/175 (44%), Gaps = 15/175 (8%)
Query: 128 RCQESTKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEK------CFYQFT 181
CQ ++ E + +NP+ S S++ TI WD+ K FT
Sbjct: 174 ECQPDLRLRGHQKEGYG-LSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFT 232
Query: 182 AHSGPIFACDWHPEHAWL-ATASRDKTIKVWDL----SIKPSLEYSINTIASVSRIKWRP 236
H+ + WH H L + + D+ + +WD + KPS +T A V+ + + P
Sbjct: 233 GHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHT-AEVNCLSFNP 291
Query: 237 QRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTEHKDVVSGLAWRGDPQLFIASS 291
+F LA+ S D +V +WD+R + L SF HKD + + W + +ASS
Sbjct: 292 YSEFILATGS--ADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASS 344
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 76/166 (45%), Gaps = 19/166 (11%)
Query: 63 EENHIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTM 122
++ +I + + + + VWN S + R N HKR + + + ++SGS D T+
Sbjct: 265 DDKYIVSASGDRTIKVWN---TSTCEFVRTLNGHKRGIACLQY---RDRLVVSGSSDNTI 318
Query: 123 RLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDV------RRPEK- 175
RL+DI C ++ + E VR + F+ S + +G I+ WD+ R P
Sbjct: 319 RLWDIECGACLRVLEGHEELVRCIRFDNKR---IVSGAYDGKIKVWDLVAALDPRAPAGT 375
Query: 176 -CFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSLE 220
C HSG +F + + + ++S D TI +WD P+ +
Sbjct: 376 LCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWDFLNDPAAQ 419
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 55/255 (21%), Positives = 114/255 (44%), Gaps = 26/255 (10%)
Query: 13 KADNGLAQPSRNVFKIF--LIKDTEFVETHNLRVGKNINLNFSC---NDVAWSCIE--EN 65
K +G A P+ ++ +I+D E +E+ N R G++ C C++ +
Sbjct: 86 KPPDGNAPPNSFYRALYPKIIQDIETIES-NWRCGRHSLQRIHCRSETSKGVYCLQYDDQ 144
Query: 66 HIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLF 125
I +G + + +W+ + + +R+ H +V + Y E +I+GS D T+R++
Sbjct: 145 KIVSGLRDNTIKIWDKNTL---ECKRILTGHTGSV--LCLQYDERV-IITGSSDSTVRVW 198
Query: 126 DIRCQESTKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQ--FTAH 183
D+ E + E+V + FN + S++ +I WD+ P + H
Sbjct: 199 DVNTGEMLNTLIHHCEAVLHLRFNNG---MMVTCSKDRSIAVWDMASPTDITLRRVLVGH 255
Query: 184 SGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSLEYSINTIASVSRIKWRPQRKFHLA 243
+ D+ + ++ +AS D+TIKVW+ S + ++ +++R + +
Sbjct: 256 RAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDRLVVSGS 313
Query: 244 SCSLVVDSSVNVWDI 258
S D+++ +WDI
Sbjct: 314 S-----DNTIRLWDI 323
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 61/128 (47%), Gaps = 7/128 (5%)
Query: 93 FNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHS 152
R +N V F +ISGS D T+ +F+ + F +T+ V V +NP
Sbjct: 143 LTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDG 202
Query: 153 PYAFASVSENGTIQQWDVRRPEKCF------YQFTAHSGPIFACDWHPEHAWLATASRDK 206
FAS +GTI ++ K + AHSG +F W P+ +A+AS DK
Sbjct: 203 SL-FASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADK 261
Query: 207 TIKVWDLS 214
TIK+W+++
Sbjct: 262 TIKIWNVA 269
Score = 32.7 bits (73), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 39/81 (48%), Gaps = 7/81 (8%)
Query: 181 TAHSGPIFACDWHPEHAWLATASRDKTIKVWDL---SIKPSLEYSINTIASVSRIKWRPQ 237
T H+ + W P++ LAT S D ++ VW++ S P + + ++SV+ + W +
Sbjct: 533 TFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNE 592
Query: 238 RKFHLASCSLVVDSSVNVWDI 258
S DS++ W++
Sbjct: 593 TTI----VSAGQDSNIKFWNV 609
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 61/226 (26%), Positives = 111/226 (49%), Gaps = 17/226 (7%)
Query: 67 IATGATNGAVVVWNLGQISRSKQE-RVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLF 125
IA+ + + V +WN R+ Q + H +V V+F + + S S D T++L+
Sbjct: 318 IASASDDKTVKLWN-----RNGQHLQTLTGHSSSVWGVAF-SPDGQTIASASDDKTVKLW 371
Query: 126 DIRCQESTKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFTAHSG 185
+ R + + ++ SVR V F+P AS S++ T++ W+ R + T HS
Sbjct: 372 N-RNGQLLQTLTGHSSSVRGVAFSPDG-QTIASASDDKTVKLWN--RNGQLLQTLTGHSS 427
Query: 186 PIFACDWHPEHAWLATASRDKTIKVWDLSIKPSLEYSINTIASVSRIKWRPQRKFHLASC 245
++ + P+ +A+AS DKT+K+W+ + + L+ +SV + + P + +AS
Sbjct: 428 SVWGVAFSPDDQTIASASDDKTVKLWNRNGQL-LQTLTGHSSSVRGVAFSPDGQT-IASA 485
Query: 246 SLVVDSSVNVWDIRRPYIPLASFTEHKDVVSGLAWRGDPQLFIASS 291
S D +V +W+ R L + T H V G+A+ D Q ++S
Sbjct: 486 S--DDKTVKLWN--RNGQLLQTLTGHSSSVRGVAFSPDGQTIASAS 527
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 61/226 (26%), Positives = 111/226 (49%), Gaps = 17/226 (7%)
Query: 67 IATGATNGAVVVWNL-GQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLF 125
IA+ + + V +WN GQ+ + H +V V+F + + S S D T++L+
Sbjct: 31 IASASDDKTVKLWNRNGQL-----LQTLTGHSSSVWGVAF-SPDGQTIASASDDKTVKLW 84
Query: 126 DIRCQESTKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFTAHSG 185
+ R + + ++ SVR V F+P AS S++ T++ W+ R + T HS
Sbjct: 85 N-RNGQLLQTLTGHSSSVRGVAFSPDG-QTIASASDDKTVKLWN--RNGQLLQTLTGHSS 140
Query: 186 PIFACDWHPEHAWLATASRDKTIKVWDLSIKPSLEYSINTIASVSRIKWRPQRKFHLASC 245
++ + P+ +A+AS DKT+K+W+ + + L+ +SV + + P + +AS
Sbjct: 141 SVWGVAFSPDGQTIASASDDKTVKLWNRNGQL-LQTLTGHSSSVWGVAFSPDGQT-IASA 198
Query: 246 SLVVDSSVNVWDIRRPYIPLASFTEHKDVVSGLAWRGDPQLFIASS 291
S D +V +W+ R L + T H V G+A+ D Q ++S
Sbjct: 199 S--DDKTVKLWN--RNGQLLQTLTGHSSSVRGVAFSPDGQTIASAS 240
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 60/226 (26%), Positives = 109/226 (48%), Gaps = 17/226 (7%)
Query: 67 IATGATNGAVVVWNL-GQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLF 125
IA+ + + V +WN GQ+ + H +V V+F + + S S D T++L+
Sbjct: 195 IASASDDKTVKLWNRNGQL-----LQTLTGHSSSVRGVAF-SPDGQTIASASDDKTVKLW 248
Query: 126 DIRCQESTKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFTAHSG 185
+ R + + ++ SV V F P AS S++ T++ W+ R + T HS
Sbjct: 249 N-RNGQLLQTLTGHSSSVNGVAFRPDG-QTIASASDDKTVKLWN--RNGQLLQTLTGHSS 304
Query: 186 PIFACDWHPEHAWLATASRDKTIKVWDLSIKPSLEYSINTIASVSRIKWRPQRKFHLASC 245
++ + P+ +A+AS DKT+K+W+ + + L+ +SV + + P + +AS
Sbjct: 305 SVWGVAFSPDGQTIASASDDKTVKLWNRNGQH-LQTLTGHSSSVWGVAFSPDGQT-IASA 362
Query: 246 SLVVDSSVNVWDIRRPYIPLASFTEHKDVVSGLAWRGDPQLFIASS 291
S D +V +W+ R L + T H V G+A+ D Q ++S
Sbjct: 363 S--DDKTVKLWN--RNGQLLQTLTGHSSSVRGVAFSPDGQTIASAS 404
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 77/151 (50%), Gaps = 11/151 (7%)
Query: 63 EENHIATGATNGAVVVWNL-GQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGT 121
++ IA+ + + V +WN GQ+ + H +V V+F + + S S D T
Sbjct: 437 DDQTIASASDDKTVKLWNRNGQL-----LQTLTGHSSSVRGVAF-SPDGQTIASASDDKT 490
Query: 122 MRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFT 181
++L++ R + + ++ SVR V F+P AS S++ T++ W+ R + T
Sbjct: 491 VKLWN-RNGQLLQTLTGHSSSVRGVAFSPDG-QTIASASDDKTVKLWN--RNGQLLQTLT 546
Query: 182 AHSGPIFACDWHPEHAWLATASRDKTIKVWD 212
HS ++ + P+ +A+AS DKT+K+W+
Sbjct: 547 GHSSSVWGVAFSPDGQTIASASSDKTVKLWN 577
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 79/156 (50%), Gaps = 9/156 (5%)
Query: 136 FHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPE 195
+++ SVR V F+P AS S++ T++ W+ R + T HS ++ + P+
Sbjct: 12 LEAHSSSVRGVAFSPDG-QTIASASDDKTVKLWN--RNGQLLQTLTGHSSSVWGVAFSPD 68
Query: 196 HAWLATASRDKTIKVWDLSIKPSLEYSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNV 255
+A+AS DKT+K+W+ + + L+ +SV + + P + +AS S D +V +
Sbjct: 69 GQTIASASDDKTVKLWNRNGQL-LQTLTGHSSSVRGVAFSPDGQT-IASAS--DDKTVKL 124
Query: 256 WDIRRPYIPLASFTEHKDVVSGLAWRGDPQLFIASS 291
W+ R L + T H V G+A+ D Q ++S
Sbjct: 125 WN--RNGQLLQTLTGHSSSVWGVAFSPDGQTIASAS 158
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 71/163 (43%), Gaps = 14/163 (8%)
Query: 62 IEENHIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGT 121
+ N +G+ + V +W+L SR+ R ++ H+ +N V F + + +GS DGT
Sbjct: 216 LNANMFISGSCDTTVRLWDLRITSRAV--RTYHGHEGDINSVKF-FPDGQRFGTGSDDGT 272
Query: 122 MRLFDIRCQESTKIFHSNTES-------VRDVEFNPHSPYAFASVSENGTIQQWDVRRPE 174
RLFD+R ++++ + V V F+ FA S NG WD E
Sbjct: 273 CRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYS-NGDCYVWDTLLAE 331
Query: 175 KCFYQFT---AHSGPIFACDWHPEHAWLATASRDKTIKVWDLS 214
T +H G I + + L T S DK +K+W S
Sbjct: 332 MVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFS 374
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 70/163 (42%), Gaps = 9/163 (5%)
Query: 67 IATGATNGAVVVWNLG-QISRSKQ---ERVFNDHKRTVNKVSFHYVESNWLISGSQDGTM 122
+A G + A ++NL Q R RV HK + + + LI+GS D T
Sbjct: 123 VACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTC 182
Query: 123 RLFDIRCQESTKIFHS-----NTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCF 177
L+D+ + IF S +T V + N + F S S + T++ WD+R +
Sbjct: 183 VLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAV 242
Query: 178 YQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSLE 220
+ H G I + + P+ T S D T +++D+ L+
Sbjct: 243 RTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQ 285
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/196 (22%), Positives = 78/196 (39%), Gaps = 17/196 (8%)
Query: 109 ESNWLISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHS-PYAFASVSENGTI-- 165
E NW++S SQDG + +++ + T + V + F P+ A + +I
Sbjct: 77 EKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFN 136
Query: 166 --QQWDVRRPEKCFYQFTAHSGPIFACDWHPEH-AWLATASRDKTIKVWDLSIKPSL--- 219
Q D T H G +C + P+ L T S D+T +WD++ +
Sbjct: 137 LSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIF 196
Query: 220 --EYSINTIASVSRIKWRP--QRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTEHKDVV 275
E+ A V + F SC D++V +WD+R + ++ H+ +
Sbjct: 197 GSEFPSGHTADVLSLSINSLNANMFISGSC----DTTVRLWDLRITSRAVRTYHGHEGDI 252
Query: 276 SGLAWRGDPQLFIASS 291
+ + + D Q F S
Sbjct: 253 NSVKFFPDGQRFGTGS 268
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 22/37 (59%)
Query: 176 CFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWD 212
C HSG +++ DW PE W+ +AS+D + VW+
Sbjct: 58 CCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWN 94
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 64/269 (23%), Positives = 118/269 (43%), Gaps = 38/269 (14%)
Query: 19 AQPSRNVFKIFLIKDTEFVET---HNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGA 75
A + + KI+ D +F +T H L + +DVAWS + N + + + +
Sbjct: 43 ASSADKLIKIWGAYDGKFEKTISGHKLGI----------SDVAWSS-DSNLLVSASDDKT 91
Query: 76 VVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKI 135
+ +W+ +S K + H V +F+ +SN ++SGS D ++R++D++ + K
Sbjct: 92 LKIWD---VSSGKCLKTLKGHSNYVFCCNFN-PQSNLIVSGSFDESVRIWDVKTGKCLKT 147
Query: 136 FHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPE 195
++++ V V FN +S S +G + WD + + P+ + P
Sbjct: 148 LPAHSDPVSAVHFNRDGSLIVSS-SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPN 206
Query: 196 HAWLATASRDKTIKVWDLSIKPSL---------EYSINTIASVSRIKWRPQRKFHLASCS 246
++ A+ D T+K+WD S L +Y I SV+ KW + S S
Sbjct: 207 GKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKW-------IVSGS 259
Query: 247 LVVDSSVNVWDIRRPYIPLASFTEHKDVV 275
D+ V +W+++ I + H DVV
Sbjct: 260 --EDNLVYIWNLQTKEI-VQKLQGHTDVV 285
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 60/125 (48%), Gaps = 3/125 (2%)
Query: 96 HKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYA 155
H + V+ V F WL + S D ++++ + K + + DV ++ S
Sbjct: 25 HTKAVSSVKFS-PNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNL- 82
Query: 156 FASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSI 215
S S++ T++ WDV KC HS +F C+++P+ + + S D+++++WD+
Sbjct: 83 LVSASDDKTLKIWDVSSG-KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 141
Query: 216 KPSLE 220
L+
Sbjct: 142 GKCLK 146
Score = 32.3 bits (72), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 18/82 (21%), Positives = 37/82 (45%), Gaps = 5/82 (6%)
Query: 178 YQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSLEYSINT-IASVSRIKWRP 236
+ H+ + + + P WLA +S DK IK+W + E +I+ +S + W
Sbjct: 20 FTLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWG-AYDGKFEKTISGHKLGISDVAWSS 78
Query: 237 QRKFHLASCSLVVDSSVNVWDI 258
+++ D ++ +WD+
Sbjct: 79 DSNLLVSASD---DKTLKIWDV 97
Score = 31.6 bits (70), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 21/106 (19%), Positives = 50/106 (47%), Gaps = 6/106 (5%)
Query: 66 HIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKV--SFHYVESNWLISGSQDGTMR 123
+I + + +W+ S+ K + + HK + +F W++SGS+D +
Sbjct: 209 YILAATLDNTLKLWDY---SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVY 265
Query: 124 LFDIRCQESTKIFHSNTESVRDVEFNP-HSPYAFASVSENGTIQQW 168
+++++ +E + +T+ V +P + A A++ + TI+ W
Sbjct: 266 IWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 311
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/195 (23%), Positives = 81/195 (41%), Gaps = 26/195 (13%)
Query: 96 HKRTVNKVSFHYVESNWLISGSQDGTMRLFDIR---------CQESTKIFHSNTE----S 142
H +N + VE +++SG DG + L+D+ C+ I + + S
Sbjct: 42 HGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYS 101
Query: 143 VRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKC----FYQ--FTAHSGPIFACDWHPEH 196
V V++ PH F S S + T++ WD + F + ++ H P+ +H
Sbjct: 102 VETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPV-----STKH 156
Query: 197 AWLATASRDKTIKVWDLSIKPSLEYSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVW 256
+A +R +++ DL + + W P+ + LA+ S DS V +W
Sbjct: 157 CLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATAS--ADSRVKLW 214
Query: 257 DIRRPYIPLASFTEH 271
D+RR L + +H
Sbjct: 215 DVRRASGCLITLDQH 229
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/114 (21%), Positives = 48/114 (42%), Gaps = 15/114 (13%)
Query: 116 GSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEK 175
G++ ++L D++ + I + + + V ++P Y A+ S + ++ WDVRR
Sbjct: 162 GTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASG 221
Query: 176 CFYQF---------------TAHSGPIFACDWHPEHAWLATASRDKTIKVWDLS 214
C TAH+G + + + L T D +++W+ S
Sbjct: 222 CLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSS 275
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 68/267 (25%), Positives = 116/267 (43%), Gaps = 33/267 (12%)
Query: 28 IFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVVWNLGQISRS 87
I++ KD E +L + DVAW + E I + +GAV +W + +
Sbjct: 72 IWVFKDPEGAPNESLCTA-GVQTEAGVTDVAW--VSEKGILVASDSGAVELWEILE---- 124
Query: 88 KQERVFN-----DHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSNTES 142
K+ + N +H V +S + + +SG +D +++++D+ + K +++++
Sbjct: 125 KESLLVNKFAKYEHDDIVKTLSV-FSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSE 183
Query: 143 VRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCF-YQFTAHSGPIFACDWHPEHAWLAT 201
V V P F S E+G I WD R+P+ F A + WHPE
Sbjct: 184 VNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKD-DTF 242
Query: 202 ASRDKTIKVWDLSIK--PSLEYSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIR 259
A D+T V ++IK S + S +++ + + LAS S D +V V D
Sbjct: 243 ACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASIS--EDCTVAVLD-- 298
Query: 260 RPYIPLASFTE------HKDVVSGLAW 280
A F+E H+D V+G+AW
Sbjct: 299 ------ADFSEVFRDLSHRDFVTGVAW 319
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 61/260 (23%), Positives = 115/260 (44%), Gaps = 29/260 (11%)
Query: 55 NDVAWSCIEENHIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLI 114
+DVAWS + N + + + + + +W+ +S K + H V +F+ +SN ++
Sbjct: 72 SDVAWSS-DSNLLVSASDDKTLKIWD---VSSGKCLKTLKGHSNYVFCCNFN-PQSNLIV 126
Query: 115 SGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPE 174
SGS D ++R++D++ + K ++++ V V FN +S S +G + WD +
Sbjct: 127 SGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS-SYDGLCRIWDTASGQ 185
Query: 175 KCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSL---------EYSINT 225
+ P+ + P ++ A+ D T+K+WD S L +Y I
Sbjct: 186 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFA 245
Query: 226 IASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTEHKDVVSGLAWRGDPQ 285
SV+ KW + S S D+ V +W+++ I + H DVV A
Sbjct: 246 NFSVTGGKW-------IVSGS--EDNLVYIWNLQTKEI-VQKLQGHTDVVISTACHPTEN 295
Query: 286 LFIASSRVSIIPRAKNIKIF 305
+ +++ + K IK+F
Sbjct: 296 IIASAA----LENDKTIKLF 311
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 60/125 (48%), Gaps = 3/125 (2%)
Query: 96 HKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYA 155
H + V+ V F WL S S D ++++ + K + + DV ++ S
Sbjct: 25 HTKAVSSVKFS-PNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNL- 82
Query: 156 FASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSI 215
S S++ T++ WDV KC HS +F C+++P+ + + S D+++++WD+
Sbjct: 83 LVSASDDKTLKIWDVSSG-KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 141
Query: 216 KPSLE 220
L+
Sbjct: 142 GKCLK 146
Score = 33.1 bits (74), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 18/82 (21%), Positives = 38/82 (46%), Gaps = 5/82 (6%)
Query: 178 YQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSLEYSINT-IASVSRIKWRP 236
+ H+ + + + P WLA++S DK IK+W + E +I+ +S + W
Sbjct: 20 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWG-AYDGKFEKTISGHKLGISDVAWSS 78
Query: 237 QRKFHLASCSLVVDSSVNVWDI 258
+++ D ++ +WD+
Sbjct: 79 DSNLLVSASD---DKTLKIWDV 97
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 56/230 (24%), Positives = 104/230 (45%), Gaps = 25/230 (10%)
Query: 55 NDVAWSCIEENHIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLI 114
+DVAWS + N + + + + + +W+ +S K + H V +F+ +SN ++
Sbjct: 72 SDVAWSS-DSNLLVSASDDKTLKIWD---VSSGKCLKTLKGHSNYVFCCNFN-PQSNLIV 126
Query: 115 SGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPE 174
SGS D ++R++D++ + K ++++ V V FN +S S +G + WD +
Sbjct: 127 SGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS-SYDGLCRIWDTASGQ 185
Query: 175 KCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSL---------EYSINT 225
+ P+ + P ++ A+ D T+K+WD S L +Y I
Sbjct: 186 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFA 245
Query: 226 IASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTEHKDVV 275
SV+ KW + S S D+ V +W+++ I + H DVV
Sbjct: 246 NFSVTGGKW-------IVSGS--EDNLVYIWNLQTKEI-VQKLQGHTDVV 285
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 60/125 (48%), Gaps = 3/125 (2%)
Query: 96 HKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYA 155
H + V+ V F WL S S D ++++ + K + + DV ++ S
Sbjct: 25 HTKAVSSVKFS-PNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNL- 82
Query: 156 FASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSI 215
S S++ T++ WDV KC HS +F C+++P+ + + S D+++++WD+
Sbjct: 83 LVSASDDKTLKIWDVSSG-KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 141
Query: 216 KPSLE 220
L+
Sbjct: 142 GKCLK 146
Score = 32.7 bits (73), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 18/82 (21%), Positives = 38/82 (46%), Gaps = 5/82 (6%)
Query: 178 YQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSLEYSINT-IASVSRIKWRP 236
+ H+ + + + P WLA++S DK IK+W + E +I+ +S + W
Sbjct: 20 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWG-AYDGKFEKTISGHKLGISDVAWSS 78
Query: 237 QRKFHLASCSLVVDSSVNVWDI 258
+++ D ++ +WD+
Sbjct: 79 DSNLLVSASD---DKTLKIWDV 97
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 56/230 (24%), Positives = 104/230 (45%), Gaps = 25/230 (10%)
Query: 55 NDVAWSCIEENHIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLI 114
+DVAWS + N + + + + + +W+ +S K + H V +F+ +SN ++
Sbjct: 75 SDVAWSS-DSNLLVSASDDKTLKIWD---VSSGKCLKTLKGHSNYVFCCNFN-PQSNLIV 129
Query: 115 SGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPE 174
SGS D ++R++D++ + K ++++ V V FN +S S +G + WD +
Sbjct: 130 SGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS-SYDGLCRIWDTASGQ 188
Query: 175 KCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSL---------EYSINT 225
+ P+ + P ++ A+ D T+K+WD S L +Y I
Sbjct: 189 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFA 248
Query: 226 IASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTEHKDVV 275
SV+ KW + S S D+ V +W+++ I + H DVV
Sbjct: 249 NFSVTGGKW-------IVSGS--EDNLVYIWNLQTKEI-VQKLQGHTDVV 288
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 60/125 (48%), Gaps = 3/125 (2%)
Query: 96 HKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYA 155
H + V+ V F WL S S D ++++ + K + + DV ++ S
Sbjct: 28 HTKAVSSVKFS-PNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNL- 85
Query: 156 FASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSI 215
S S++ T++ WDV KC HS +F C+++P+ + + S D+++++WD+
Sbjct: 86 LVSASDDKTLKIWDVSS-GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 144
Query: 216 KPSLE 220
L+
Sbjct: 145 GKCLK 149
Score = 32.0 bits (71), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 18/82 (21%), Positives = 38/82 (46%), Gaps = 5/82 (6%)
Query: 178 YQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSLEYSINT-IASVSRIKWRP 236
+ H+ + + + P WLA++S DK IK+W + E +I+ +S + W
Sbjct: 23 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWG-AYDGKFEKTISGHKLGISDVAWSS 81
Query: 237 QRKFHLASCSLVVDSSVNVWDI 258
+++ D ++ +WD+
Sbjct: 82 DSNLLVSASD---DKTLKIWDV 100
Score = 32.0 bits (71), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 21/106 (19%), Positives = 50/106 (47%), Gaps = 6/106 (5%)
Query: 66 HIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKV--SFHYVESNWLISGSQDGTMR 123
+I + + +W+ S+ K + + HK + +F W++SGS+D +
Sbjct: 212 YILAATLDNTLKLWDY---SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVY 268
Query: 124 LFDIRCQESTKIFHSNTESVRDVEFNP-HSPYAFASVSENGTIQQW 168
+++++ +E + +T+ V +P + A A++ + TI+ W
Sbjct: 269 IWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 314
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 56/230 (24%), Positives = 104/230 (45%), Gaps = 25/230 (10%)
Query: 55 NDVAWSCIEENHIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLI 114
+DVAWS + N + + + + + +W+ +S K + H V +F+ +SN ++
Sbjct: 75 SDVAWSS-DSNLLVSASDDKTLKIWD---VSSGKCLKTLKGHSNYVFCCNFN-PQSNLIV 129
Query: 115 SGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPE 174
SGS D ++R++D++ + K ++++ V V FN +S S +G + WD +
Sbjct: 130 SGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS-SYDGLCRIWDTASGQ 188
Query: 175 KCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSL---------EYSINT 225
+ P+ + P ++ A+ D T+K+WD S L +Y I
Sbjct: 189 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFA 248
Query: 226 IASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTEHKDVV 275
SV+ KW + S S D+ V +W+++ I + H DVV
Sbjct: 249 NFSVTGGKW-------IVSGS--EDNLVYIWNLQTKEI-VQKLQGHTDVV 288
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 60/125 (48%), Gaps = 3/125 (2%)
Query: 96 HKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYA 155
H + V+ V F WL S S D ++++ + K + + DV ++ S
Sbjct: 28 HTKAVSSVKFS-PNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNL- 85
Query: 156 FASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSI 215
S S++ T++ WDV KC HS +F C+++P+ + + S D+++++WD+
Sbjct: 86 LVSASDDKTLKIWDVSS-GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 144
Query: 216 KPSLE 220
L+
Sbjct: 145 GKCLK 149
Score = 32.3 bits (72), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 18/82 (21%), Positives = 38/82 (46%), Gaps = 5/82 (6%)
Query: 178 YQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSLEYSINT-IASVSRIKWRP 236
+ H+ + + + P WLA++S DK IK+W + E +I+ +S + W
Sbjct: 23 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWG-AYDGKFEKTISGHKLGISDVAWSS 81
Query: 237 QRKFHLASCSLVVDSSVNVWDI 258
+++ D ++ +WD+
Sbjct: 82 DSNLLVSASD---DKTLKIWDV 100
Score = 32.0 bits (71), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 21/106 (19%), Positives = 50/106 (47%), Gaps = 6/106 (5%)
Query: 66 HIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKV--SFHYVESNWLISGSQDGTMR 123
+I + + +W+ S+ K + + HK + +F W++SGS+D +
Sbjct: 212 YILAATLDNTLKLWDY---SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVY 268
Query: 124 LFDIRCQESTKIFHSNTESVRDVEFNP-HSPYAFASVSENGTIQQW 168
+++++ +E + +T+ V +P + A A++ + TI+ W
Sbjct: 269 IWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 314
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 56/230 (24%), Positives = 104/230 (45%), Gaps = 25/230 (10%)
Query: 55 NDVAWSCIEENHIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLI 114
+DVAWS + N + + + + + +W+ +S K + H V +F+ +SN ++
Sbjct: 68 SDVAWSS-DSNLLVSASDDKTLKIWD---VSSGKCLKTLKGHSNYVFCCNFN-PQSNLIV 122
Query: 115 SGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPE 174
SGS D ++R++D++ + K ++++ V V FN +S S +G + WD +
Sbjct: 123 SGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS-SYDGLCRIWDTASGQ 181
Query: 175 KCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSL---------EYSINT 225
+ P+ + P ++ A+ D T+K+WD S L +Y I
Sbjct: 182 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFA 241
Query: 226 IASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTEHKDVV 275
SV+ KW + S S D+ V +W+++ I + H DVV
Sbjct: 242 NFSVTGGKW-------IVSGS--EDNLVYIWNLQTKEI-VQKLQGHTDVV 281
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 60/125 (48%), Gaps = 3/125 (2%)
Query: 96 HKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYA 155
H + V+ V F WL S S D ++++ + K + + DV ++ S
Sbjct: 21 HTKAVSSVKFS-PNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNL- 78
Query: 156 FASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSI 215
S S++ T++ WDV KC HS +F C+++P+ + + S D+++++WD+
Sbjct: 79 LVSASDDKTLKIWDVSS-GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 137
Query: 216 KPSLE 220
L+
Sbjct: 138 GKCLK 142
Score = 32.3 bits (72), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 18/82 (21%), Positives = 38/82 (46%), Gaps = 5/82 (6%)
Query: 178 YQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSLEYSINT-IASVSRIKWRP 236
+ H+ + + + P WLA++S DK IK+W + E +I+ +S + W
Sbjct: 16 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWG-AYDGKFEKTISGHKLGISDVAWSS 74
Query: 237 QRKFHLASCSLVVDSSVNVWDI 258
+++ D ++ +WD+
Sbjct: 75 DSNLLVSASD---DKTLKIWDV 93
Score = 32.0 bits (71), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 21/106 (19%), Positives = 50/106 (47%), Gaps = 6/106 (5%)
Query: 66 HIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKV--SFHYVESNWLISGSQDGTMR 123
+I + + +W+ S+ K + + HK + +F W++SGS+D +
Sbjct: 205 YILAATLDNTLKLWDY---SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVY 261
Query: 124 LFDIRCQESTKIFHSNTESVRDVEFNP-HSPYAFASVSENGTIQQW 168
+++++ +E + +T+ V +P + A A++ + TI+ W
Sbjct: 262 IWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 307
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 55/230 (23%), Positives = 102/230 (44%), Gaps = 25/230 (10%)
Query: 55 NDVAWSCIEENHIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLI 114
+DVAWS + N + + + + + +W+ +S K + H V +F+ +SN ++
Sbjct: 74 SDVAWSS-DSNLLVSASDDKTLKIWD---VSSGKCLKTLKGHSNYVFCCNFN-PQSNLIV 128
Query: 115 SGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPE 174
SGS D ++R++D++ + K ++++ V V FN +S S +G + WD +
Sbjct: 129 SGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS-SYDGLCRIWDTASGQ 187
Query: 175 KCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSL---------EYSINT 225
+ P+ + P ++ A+ D T+K+WD S L +Y I
Sbjct: 188 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFA 247
Query: 226 IASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTEHKDVV 275
SV+ KW S D+ V +W+++ I + H DVV
Sbjct: 248 NFSVTGGKWI---------VSGSEDNLVYIWNLQTKEI-VQKLQGHTDVV 287
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 60/125 (48%), Gaps = 3/125 (2%)
Query: 96 HKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYA 155
H + V+ V F WL S S D ++++ + K + + DV ++ S
Sbjct: 27 HTKAVSSVKFS-PNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNL- 84
Query: 156 FASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSI 215
S S++ T++ WDV KC HS +F C+++P+ + + S D+++++WD+
Sbjct: 85 LVSASDDKTLKIWDVSS-GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 143
Query: 216 KPSLE 220
L+
Sbjct: 144 GKCLK 148
Score = 32.3 bits (72), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 18/82 (21%), Positives = 38/82 (46%), Gaps = 5/82 (6%)
Query: 178 YQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSLEYSINT-IASVSRIKWRP 236
+ H+ + + + P WLA++S DK IK+W + E +I+ +S + W
Sbjct: 22 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWG-AYDGKFEKTISGHKLGISDVAWSS 80
Query: 237 QRKFHLASCSLVVDSSVNVWDI 258
+++ D ++ +WD+
Sbjct: 81 DSNLLVSASD---DKTLKIWDV 99
Score = 32.0 bits (71), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 21/106 (19%), Positives = 50/106 (47%), Gaps = 6/106 (5%)
Query: 66 HIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKV--SFHYVESNWLISGSQDGTMR 123
+I + + +W+ S+ K + + HK + +F W++SGS+D +
Sbjct: 211 YILAATLDNTLKLWDY---SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVY 267
Query: 124 LFDIRCQESTKIFHSNTESVRDVEFNP-HSPYAFASVSENGTIQQW 168
+++++ +E + +T+ V +P + A A++ + TI+ W
Sbjct: 268 IWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 313
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 56/230 (24%), Positives = 104/230 (45%), Gaps = 25/230 (10%)
Query: 55 NDVAWSCIEENHIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLI 114
+DVAWS + N + + + + + +W+ +S K + H V +F+ +SN ++
Sbjct: 65 SDVAWSS-DSNLLVSASDDKTLKIWD---VSSGKCLKTLKGHSNYVFCCNFN-PQSNLIV 119
Query: 115 SGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPE 174
SGS D ++R++D++ + K ++++ V V FN +S S +G + WD +
Sbjct: 120 SGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS-SYDGLCRIWDTASGQ 178
Query: 175 KCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSL---------EYSINT 225
+ P+ + P ++ A+ D T+K+WD S L +Y I
Sbjct: 179 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFA 238
Query: 226 IASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTEHKDVV 275
SV+ KW + S S D+ V +W+++ I + H DVV
Sbjct: 239 NFSVTGGKW-------IVSGS--EDNLVYIWNLQTKEI-VQKLQGHTDVV 278
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 60/125 (48%), Gaps = 3/125 (2%)
Query: 96 HKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYA 155
H + V+ V F WL S S D ++++ + K + + DV ++ S
Sbjct: 18 HTKAVSSVKFS-PNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNL- 75
Query: 156 FASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSI 215
S S++ T++ WDV KC HS +F C+++P+ + + S D+++++WD+
Sbjct: 76 LVSASDDKTLKIWDVSS-GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 134
Query: 216 KPSLE 220
L+
Sbjct: 135 GKCLK 139
Score = 32.0 bits (71), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 21/106 (19%), Positives = 50/106 (47%), Gaps = 6/106 (5%)
Query: 66 HIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKV--SFHYVESNWLISGSQDGTMR 123
+I + + +W+ S+ K + + HK + +F W++SGS+D +
Sbjct: 202 YILAATLDNTLKLWDY---SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVY 258
Query: 124 LFDIRCQESTKIFHSNTESVRDVEFNP-HSPYAFASVSENGTIQQW 168
+++++ +E + +T+ V +P + A A++ + TI+ W
Sbjct: 259 IWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 304
Score = 32.0 bits (71), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 18/82 (21%), Positives = 38/82 (46%), Gaps = 5/82 (6%)
Query: 178 YQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSLEYSINT-IASVSRIKWRP 236
+ H+ + + + P WLA++S DK IK+W + E +I+ +S + W
Sbjct: 13 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWG-AYDGKFEKTISGHKLGISDVAWSS 71
Query: 237 QRKFHLASCSLVVDSSVNVWDI 258
+++ D ++ +WD+
Sbjct: 72 DSNLLVSASD---DKTLKIWDV 90
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 56/230 (24%), Positives = 104/230 (45%), Gaps = 25/230 (10%)
Query: 55 NDVAWSCIEENHIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLI 114
+DVAWS + N + + + + + +W+ +S K + H V +F+ +SN ++
Sbjct: 86 SDVAWSS-DSNLLVSASDDKTLKIWD---VSSGKCLKTLKGHSNYVFCCNFN-PQSNLIV 140
Query: 115 SGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPE 174
SGS D ++R++D++ + K ++++ V V FN +S S +G + WD +
Sbjct: 141 SGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS-SYDGLCRIWDTASGQ 199
Query: 175 KCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSL---------EYSINT 225
+ P+ + P ++ A+ D T+K+WD S L +Y I
Sbjct: 200 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFA 259
Query: 226 IASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTEHKDVV 275
SV+ KW + S S D+ V +W+++ I + H DVV
Sbjct: 260 NFSVTGGKW-------IVSGS--EDNLVYIWNLQTKEI-VQKLQGHTDVV 299
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 60/125 (48%), Gaps = 3/125 (2%)
Query: 96 HKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYA 155
H + V+ V F WL S S D ++++ + K + + DV ++ S
Sbjct: 39 HTKAVSSVKFS-PNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNL- 96
Query: 156 FASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSI 215
S S++ T++ WDV KC HS +F C+++P+ + + S D+++++WD+
Sbjct: 97 LVSASDDKTLKIWDVSS-GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 155
Query: 216 KPSLE 220
L+
Sbjct: 156 GKCLK 160
Score = 32.3 bits (72), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 18/82 (21%), Positives = 38/82 (46%), Gaps = 5/82 (6%)
Query: 178 YQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSLEYSINT-IASVSRIKWRP 236
+ H+ + + + P WLA++S DK IK+W + E +I+ +S + W
Sbjct: 34 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWG-AYDGKFEKTISGHKLGISDVAWSS 92
Query: 237 QRKFHLASCSLVVDSSVNVWDI 258
+++ D ++ +WD+
Sbjct: 93 DSNLLVSASD---DKTLKIWDV 111
Score = 32.0 bits (71), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 21/106 (19%), Positives = 50/106 (47%), Gaps = 6/106 (5%)
Query: 66 HIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKV--SFHYVESNWLISGSQDGTMR 123
+I + + +W+ S+ K + + HK + +F W++SGS+D +
Sbjct: 223 YILAATLDNTLKLWDY---SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVY 279
Query: 124 LFDIRCQESTKIFHSNTESVRDVEFNP-HSPYAFASVSENGTIQQW 168
+++++ +E + +T+ V +P + A A++ + TI+ W
Sbjct: 280 IWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 325
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 53/196 (27%), Positives = 86/196 (43%), Gaps = 10/196 (5%)
Query: 65 NHIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSF-HYVESNWLISGSQDGTMR 123
N++A G + ++NL +R RV + +S +++ N +++ S D T
Sbjct: 110 NYVACGGLDNICSIYNLK--TREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCA 167
Query: 124 LFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFTAH 183
L+DI + T F +T V + P + F S + + + + WDVR C FT H
Sbjct: 168 LWDIETGQQTTTFTGHTGDVMSLSLAPDTRL-FVSGACDASAKLWDVREG-MCRQTFTGH 225
Query: 184 SGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSL-EYS-INTIASVSRIKWRPQRKFH 241
I A + P AT S D T +++DL L YS N I ++ + + +
Sbjct: 226 ESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLL 285
Query: 242 LASCSLVVDSSVNVWD 257
LA D + NVWD
Sbjct: 286 LAG---YDDFNCNVWD 298
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 53/196 (27%), Positives = 86/196 (43%), Gaps = 10/196 (5%)
Query: 65 NHIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSF-HYVESNWLISGSQDGTMR 123
N++A G + ++NL +R RV + +S +++ N +++ S D T
Sbjct: 121 NYVACGGLDNICSIYNLK--TREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCA 178
Query: 124 LFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFTAH 183
L+DI + T F +T V + P + F S + + + + WDVR C FT H
Sbjct: 179 LWDIETGQQTTTFTGHTGDVMSLSLAPDTRL-FVSGACDASAKLWDVREG-MCRQTFTGH 236
Query: 184 SGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSL-EYS-INTIASVSRIKWRPQRKFH 241
I A + P AT S D T +++DL L YS N I ++ + + +
Sbjct: 237 ESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLL 296
Query: 242 LASCSLVVDSSVNVWD 257
LA D + NVWD
Sbjct: 297 LAG---YDDFNCNVWD 309
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/186 (18%), Positives = 70/186 (37%), Gaps = 7/186 (3%)
Query: 108 VESNWLISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASVSEN-GTIQ 166
+S L+S SQDG + ++D + V + P Y +N +I
Sbjct: 76 TDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIY 135
Query: 167 QWDVRRPE-KCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSLEYSINT 225
R + + H+G + C + ++ + T+S D T +WD+
Sbjct: 136 NLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGH 194
Query: 226 IASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTEHKDVVSGLAWRGDPQ 285
V + P + ++ D+S +WD+R + +FT H+ ++ + + +
Sbjct: 195 TGDVMSLSLAPDTRLFVSG---ACDASAKLWDVREG-MCRQTFTGHESDINAICFFPNGN 250
Query: 286 LFIASS 291
F S
Sbjct: 251 AFATGS 256
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 55/230 (23%), Positives = 102/230 (44%), Gaps = 25/230 (10%)
Query: 55 NDVAWSCIEENHIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLI 114
+DVAWS + N + + + + + +W+ +S K + H V +F+ +SN ++
Sbjct: 75 SDVAWSS-DSNLLVSASDDKTLKIWD---VSSGKCLKTLKGHSNYVFCCNFN-PQSNLIV 129
Query: 115 SGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPE 174
SGS D ++R++D++ + K ++++ V V FN +S S +G + WD +
Sbjct: 130 SGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS-SYDGLCRIWDTASGQ 188
Query: 175 KCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSL---------EYSINT 225
+ P+ + P ++ A+ D T+K+WD S L +Y I
Sbjct: 189 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFA 248
Query: 226 IASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTEHKDVV 275
SV+ KW S D+ V +W+++ I + H DVV
Sbjct: 249 NFSVTGGKWI---------VSGSEDNLVYIWNLQTKEI-VQKLQGHTDVV 288
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 60/125 (48%), Gaps = 3/125 (2%)
Query: 96 HKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYA 155
H + V+ V F WL S S D ++++ + K + + DV ++ S
Sbjct: 28 HTKAVSSVKFS-PNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNL- 85
Query: 156 FASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSI 215
S S++ T++ WDV KC HS +F C+++P+ + + S D+++++WD+
Sbjct: 86 LVSASDDKTLKIWDVSS-GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 144
Query: 216 KPSLE 220
L+
Sbjct: 145 GKCLK 149
Score = 32.3 bits (72), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 18/82 (21%), Positives = 38/82 (46%), Gaps = 5/82 (6%)
Query: 178 YQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSLEYSINT-IASVSRIKWRP 236
+ H+ + + + P WLA++S DK IK+W + E +I+ +S + W
Sbjct: 23 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWG-AYDGKFEKTISGHKLGISDVAWSS 81
Query: 237 QRKFHLASCSLVVDSSVNVWDI 258
+++ D ++ +WD+
Sbjct: 82 DSNLLVSASD---DKTLKIWDV 100
Score = 32.0 bits (71), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 21/106 (19%), Positives = 50/106 (47%), Gaps = 6/106 (5%)
Query: 66 HIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKV--SFHYVESNWLISGSQDGTMR 123
+I + + +W+ S+ K + + HK + +F W++SGS+D +
Sbjct: 212 YILAATLDNTLKLWDY---SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVY 268
Query: 124 LFDIRCQESTKIFHSNTESVRDVEFNP-HSPYAFASVSENGTIQQW 168
+++++ +E + +T+ V +P + A A++ + TI+ W
Sbjct: 269 IWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 314
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 53/196 (27%), Positives = 86/196 (43%), Gaps = 10/196 (5%)
Query: 65 NHIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSF-HYVESNWLISGSQDGTMR 123
N++A G + ++NL +R RV + +S +++ N +++ S D T
Sbjct: 110 NYVACGGLDNICSIYNLK--TREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCA 167
Query: 124 LFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFTAH 183
L+DI + T F +T V + P + F S + + + + WDVR C FT H
Sbjct: 168 LWDIETGQQTTTFTGHTGDVMSLSLAPDTRL-FVSGACDASAKLWDVREG-MCRQTFTGH 225
Query: 184 SGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSL-EYS-INTIASVSRIKWRPQRKFH 241
I A + P AT S D T +++DL L YS N I ++ + + +
Sbjct: 226 ESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLL 285
Query: 242 LASCSLVVDSSVNVWD 257
LA D + NVWD
Sbjct: 286 LAG---YDDFNCNVWD 298
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 53/196 (27%), Positives = 86/196 (43%), Gaps = 10/196 (5%)
Query: 65 NHIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSF-HYVESNWLISGSQDGTMR 123
N++A G + ++NL +R RV + +S +++ N +++ S D T
Sbjct: 110 NYVACGGLDNICSIYNLK--TREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCA 167
Query: 124 LFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFTAH 183
L+DI + T F +T V + P + F S + + + + WDVR C FT H
Sbjct: 168 LWDIETGQQTTTFTGHTGDVMSLSLAPDTRL-FVSGACDASAKLWDVREG-MCRQTFTGH 225
Query: 184 SGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSL-EYS-INTIASVSRIKWRPQRKFH 241
I A + P AT S D T +++DL L YS N I ++ + + +
Sbjct: 226 ESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLL 285
Query: 242 LASCSLVVDSSVNVWD 257
LA D + NVWD
Sbjct: 286 LAG---YDDFNCNVWD 298
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/186 (18%), Positives = 70/186 (37%), Gaps = 7/186 (3%)
Query: 108 VESNWLISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASVSEN-GTIQ 166
+S L+S SQDG + ++D + V + P Y +N +I
Sbjct: 65 TDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIY 124
Query: 167 QWDVRRPE-KCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSLEYSINT 225
R + + H+G + C + ++ + T+S D T +WD+
Sbjct: 125 NLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGH 183
Query: 226 IASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTEHKDVVSGLAWRGDPQ 285
V + P + ++ D+S +WD+R + +FT H+ ++ + + +
Sbjct: 184 TGDVMSLSLAPDTRLFVSG---ACDASAKLWDVREG-MCRQTFTGHESDINAICFFPNGN 239
Query: 286 LFIASS 291
F S
Sbjct: 240 AFATGS 245
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 56/230 (24%), Positives = 104/230 (45%), Gaps = 25/230 (10%)
Query: 55 NDVAWSCIEENHIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLI 114
+DVAWS + N + + + + + +W+ +S K + H V +F+ +SN ++
Sbjct: 69 SDVAWSS-DSNLLVSASDDKTLKIWD---VSSGKCLKTLKGHSNYVFCCNFN-PQSNLIV 123
Query: 115 SGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPE 174
SGS D ++R++D++ + K ++++ V V FN +S S +G + WD +
Sbjct: 124 SGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS-SYDGLCRIWDTASGQ 182
Query: 175 KCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSL---------EYSINT 225
+ P+ + P ++ A+ D T+K+WD S L +Y I
Sbjct: 183 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFA 242
Query: 226 IASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTEHKDVV 275
SV+ KW + S S D+ V +W+++ I + H DVV
Sbjct: 243 NFSVTGGKW-------IVSGS--EDNLVYIWNLQTKEI-VQKLQGHTDVV 282
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 60/125 (48%), Gaps = 3/125 (2%)
Query: 96 HKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYA 155
H + V+ V F WL S S D ++++ + K + + DV ++ S
Sbjct: 22 HTKAVSSVKFS-PNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNL- 79
Query: 156 FASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSI 215
S S++ T++ WDV KC HS +F C+++P+ + + S D+++++WD+
Sbjct: 80 LVSASDDKTLKIWDVSS-GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 138
Query: 216 KPSLE 220
L+
Sbjct: 139 GKCLK 143
Score = 32.0 bits (71), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 18/82 (21%), Positives = 38/82 (46%), Gaps = 5/82 (6%)
Query: 178 YQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSLEYSINT-IASVSRIKWRP 236
+ H+ + + + P WLA++S DK IK+W + E +I+ +S + W
Sbjct: 17 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWG-AYDGKFEKTISGHKLGISDVAWSS 75
Query: 237 QRKFHLASCSLVVDSSVNVWDI 258
+++ D ++ +WD+
Sbjct: 76 DSNLLVSASD---DKTLKIWDV 94
Score = 32.0 bits (71), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 21/106 (19%), Positives = 50/106 (47%), Gaps = 6/106 (5%)
Query: 66 HIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKV--SFHYVESNWLISGSQDGTMR 123
+I + + +W+ S+ K + + HK + +F W++SGS+D +
Sbjct: 206 YILAATLDNTLKLWDY---SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVY 262
Query: 124 LFDIRCQESTKIFHSNTESVRDVEFNP-HSPYAFASVSENGTIQQW 168
+++++ +E + +T+ V +P + A A++ + TI+ W
Sbjct: 263 IWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 308
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 53/196 (27%), Positives = 86/196 (43%), Gaps = 10/196 (5%)
Query: 65 NHIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSF-HYVESNWLISGSQDGTMR 123
N++A G + ++NL +R RV + +S +++ N +++ S D T
Sbjct: 110 NYVACGGLDNICSIYNLK--TREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCA 167
Query: 124 LFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFTAH 183
L+DI + T F +T V + P + F S + + + + WDVR C FT H
Sbjct: 168 LWDIETGQQTTTFTGHTGDVMSLSLAPDTRL-FVSGACDASAKLWDVREG-MCRQTFTGH 225
Query: 184 SGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSL-EYS-INTIASVSRIKWRPQRKFH 241
I A + P AT S D T +++DL L YS N I ++ + + +
Sbjct: 226 ESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLL 285
Query: 242 LASCSLVVDSSVNVWD 257
LA D + NVWD
Sbjct: 286 LAG---YDDFNCNVWD 298
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/186 (18%), Positives = 70/186 (37%), Gaps = 7/186 (3%)
Query: 108 VESNWLISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASVSEN-GTIQ 166
+S L+S SQDG + ++D + V + P Y +N +I
Sbjct: 65 TDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIY 124
Query: 167 QWDVRRPE-KCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSLEYSINT 225
R + + H+G + C + ++ + T+S D T +WD+
Sbjct: 125 NLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGH 183
Query: 226 IASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTEHKDVVSGLAWRGDPQ 285
V + P + ++ D+S +WD+R + +FT H+ ++ + + +
Sbjct: 184 TGDVMSLSLAPDTRLFVSG---ACDASAKLWDVREG-MCRQTFTGHESDINAICFFPNGN 239
Query: 286 LFIASS 291
F S
Sbjct: 240 AFATGS 245
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 56/230 (24%), Positives = 104/230 (45%), Gaps = 25/230 (10%)
Query: 55 NDVAWSCIEENHIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLI 114
+DVAWS + N + + + + + +W+ +S K + H V +F+ +SN ++
Sbjct: 69 SDVAWSS-DSNLLVSASDDKTLKIWD---VSSGKCLKTLKGHSNYVFCCNFN-PQSNLIV 123
Query: 115 SGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPE 174
SGS D ++R++D++ + K ++++ V V FN +S S +G + WD +
Sbjct: 124 SGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS-SYDGLCRIWDTASGQ 182
Query: 175 KCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSL---------EYSINT 225
+ P+ + P ++ A+ D T+K+WD S L +Y I
Sbjct: 183 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFA 242
Query: 226 IASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTEHKDVV 275
SV+ KW + S S D+ V +W+++ I + H DVV
Sbjct: 243 NFSVTGGKW-------IVSGS--EDNLVYIWNLQTKEI-VQKLQGHTDVV 282
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 60/125 (48%), Gaps = 3/125 (2%)
Query: 96 HKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYA 155
H + V+ V F WL S S D ++++ + K + + DV ++ S
Sbjct: 22 HTKAVSSVKFS-PNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNL- 79
Query: 156 FASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSI 215
S S++ T++ WDV KC HS +F C+++P+ + + S D+++++WD+
Sbjct: 80 LVSASDDKTLKIWDVSS-GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 138
Query: 216 KPSLE 220
L+
Sbjct: 139 GKCLK 143
Score = 32.3 bits (72), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 18/82 (21%), Positives = 38/82 (46%), Gaps = 5/82 (6%)
Query: 178 YQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSLEYSINT-IASVSRIKWRP 236
+ H+ + + + P WLA++S DK IK+W + E +I+ +S + W
Sbjct: 17 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWG-AYDGKFEKTISGHKLGISDVAWSS 75
Query: 237 QRKFHLASCSLVVDSSVNVWDI 258
+++ D ++ +WD+
Sbjct: 76 DSNLLVSASD---DKTLKIWDV 94
Score = 32.0 bits (71), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 21/106 (19%), Positives = 50/106 (47%), Gaps = 6/106 (5%)
Query: 66 HIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKV--SFHYVESNWLISGSQDGTMR 123
+I + + +W+ S+ K + + HK + +F W++SGS+D +
Sbjct: 206 YILAATLDNTLKLWDY---SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVY 262
Query: 124 LFDIRCQESTKIFHSNTESVRDVEFNP-HSPYAFASVSENGTIQQW 168
+++++ +E + +T+ V +P + A A++ + TI+ W
Sbjct: 263 IWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 308
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 56/230 (24%), Positives = 104/230 (45%), Gaps = 25/230 (10%)
Query: 55 NDVAWSCIEENHIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLI 114
+DVAWS + N + + + + + +W+ +S K + H V +F+ +SN ++
Sbjct: 70 SDVAWSS-DSNLLVSASDDKTLKIWD---VSSGKCLKTLKGHSNYVFCCNFN-PQSNLIV 124
Query: 115 SGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPE 174
SGS D ++R++D++ + K ++++ V V FN +S S +G + WD +
Sbjct: 125 SGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS-SYDGLCRIWDTASGQ 183
Query: 175 KCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSL---------EYSINT 225
+ P+ + P ++ A+ D T+K+WD S L +Y I
Sbjct: 184 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFA 243
Query: 226 IASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTEHKDVV 275
SV+ KW + S S D+ V +W+++ I + H DVV
Sbjct: 244 NFSVTGGKW-------IVSGS--EDNLVYIWNLQTKEI-VQKLQGHTDVV 283
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 60/125 (48%), Gaps = 3/125 (2%)
Query: 96 HKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYA 155
H + V+ V F WL S S D ++++ + K + + DV ++ S
Sbjct: 23 HTKAVSSVKFS-PNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNL- 80
Query: 156 FASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSI 215
S S++ T++ WDV KC HS +F C+++P+ + + S D+++++WD+
Sbjct: 81 LVSASDDKTLKIWDVSS-GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 139
Query: 216 KPSLE 220
L+
Sbjct: 140 GKCLK 144
Score = 32.3 bits (72), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 18/82 (21%), Positives = 38/82 (46%), Gaps = 5/82 (6%)
Query: 178 YQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSLEYSINT-IASVSRIKWRP 236
+ H+ + + + P WLA++S DK IK+W + E +I+ +S + W
Sbjct: 18 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWG-AYDGKFEKTISGHKLGISDVAWSS 76
Query: 237 QRKFHLASCSLVVDSSVNVWDI 258
+++ D ++ +WD+
Sbjct: 77 DSNLLVSASD---DKTLKIWDV 95
Score = 32.0 bits (71), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 21/106 (19%), Positives = 50/106 (47%), Gaps = 6/106 (5%)
Query: 66 HIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKV--SFHYVESNWLISGSQDGTMR 123
+I + + +W+ S+ K + + HK + +F W++SGS+D +
Sbjct: 207 YILAATLDNTLKLWDY---SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVY 263
Query: 124 LFDIRCQESTKIFHSNTESVRDVEFNP-HSPYAFASVSENGTIQQW 168
+++++ +E + +T+ V +P + A A++ + TI+ W
Sbjct: 264 IWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 309
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 74/160 (46%), Gaps = 21/160 (13%)
Query: 143 VRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATA 202
+R V F+P + A+ +E+ I+ WD+ K H I++ D+ P L +
Sbjct: 126 IRSVCFSPDGKF-LATGAEDRLIRIWDIEN-RKIVMILQGHEQDIYSLDYFPSGDKLVSG 183
Query: 203 SRDKTIKVWDL-----SIKPSLEYSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWD 257
S D+T+++WDL S+ S+E + T+A P ++A+ SL D +V VWD
Sbjct: 184 SGDRTVRIWDLRTGQCSLTLSIEDGVTTVAV------SPGDGKYIAAGSL--DRAVRVWD 235
Query: 258 ------IRRPYIPLASFTEHKDVVSGLAWRGDPQLFIASS 291
+ R S T HKD V + + D Q ++ S
Sbjct: 236 SETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGS 275
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/153 (22%), Positives = 73/153 (47%), Gaps = 11/153 (7%)
Query: 67 IATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFD 126
+ATGA + + +W+ I K + H++ + + + + + L+SGS D T+R++D
Sbjct: 138 LATGAEDRLIRIWD---IENRKIVMILQGHEQDIYSLDY-FPSGDKLVSGSGDRTVRIWD 193
Query: 127 IRCQESTKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWD------VRRPEKCFYQF 180
+R + + S + V V +P A+ S + ++ WD V R +
Sbjct: 194 LRTGQCSLTL-SIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESG 252
Query: 181 TAHSGPIFACDWHPEHAWLATASRDKTIKVWDL 213
T H +++ + + + + S D+++K+W+L
Sbjct: 253 TGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNL 285
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 55/230 (23%), Positives = 102/230 (44%), Gaps = 25/230 (10%)
Query: 55 NDVAWSCIEENHIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLI 114
+DVAWS + N + + + + + +W+ +S K + H V +F+ +SN ++
Sbjct: 91 SDVAWSS-DSNLLVSASDDKTLKIWD---VSSGKCLKTLKGHSNYVFCCNFN-PQSNLIV 145
Query: 115 SGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPE 174
SGS D ++R++D++ + K ++++ V V FN +S S +G + WD +
Sbjct: 146 SGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS-SYDGLCRIWDTASGQ 204
Query: 175 KCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSL---------EYSINT 225
+ P+ + P ++ A+ D T+K+WD S L +Y I
Sbjct: 205 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFA 264
Query: 226 IASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTEHKDVV 275
SV+ KW S D+ V +W+++ I + H DVV
Sbjct: 265 NFSVTGGKWI---------VSGSEDNLVYIWNLQTKEI-VQKLQGHTDVV 304
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 60/125 (48%), Gaps = 3/125 (2%)
Query: 96 HKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYA 155
H + V+ V F WL S S D ++++ + K + + DV ++ S
Sbjct: 44 HTKAVSSVKFS-PNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNL- 101
Query: 156 FASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSI 215
S S++ T++ WDV KC HS +F C+++P+ + + S D+++++WD+
Sbjct: 102 LVSASDDKTLKIWDVSS-GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 160
Query: 216 KPSLE 220
L+
Sbjct: 161 GKCLK 165
Score = 32.0 bits (71), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 18/82 (21%), Positives = 38/82 (46%), Gaps = 5/82 (6%)
Query: 178 YQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSLEYSINT-IASVSRIKWRP 236
+ H+ + + + P WLA++S DK IK+W + E +I+ +S + W
Sbjct: 39 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWG-AYDGKFEKTISGHKLGISDVAWSS 97
Query: 237 QRKFHLASCSLVVDSSVNVWDI 258
+++ D ++ +WD+
Sbjct: 98 DSNLLVSASD---DKTLKIWDV 116
Score = 31.6 bits (70), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 21/106 (19%), Positives = 50/106 (47%), Gaps = 6/106 (5%)
Query: 66 HIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKV--SFHYVESNWLISGSQDGTMR 123
+I + + +W+ S+ K + + HK + +F W++SGS+D +
Sbjct: 228 YILAATLDNTLKLWDY---SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVY 284
Query: 124 LFDIRCQESTKIFHSNTESVRDVEFNP-HSPYAFASVSENGTIQQW 168
+++++ +E + +T+ V +P + A A++ + TI+ W
Sbjct: 285 IWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 330
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 56/230 (24%), Positives = 103/230 (44%), Gaps = 25/230 (10%)
Query: 55 NDVAWSCIEENHIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLI 114
+DVAWS + N + + + + + +W+ +S K + H V +F+ +SN ++
Sbjct: 72 SDVAWSS-DSNLLVSASDDKTLKIWD---VSSGKCLKTLKGHSNYVFCCNFN-PQSNLIV 126
Query: 115 SGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPE 174
SGS D ++R++D++ K ++++ V V FN +S S +G + WD +
Sbjct: 127 SGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSS-SYDGLCRIWDTASGQ 185
Query: 175 KCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSL---------EYSINT 225
+ P+ + P ++ A+ D T+K+WD S L +Y I
Sbjct: 186 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFA 245
Query: 226 IASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTEHKDVV 275
SV+ KW + S S D+ V +W+++ I + H DVV
Sbjct: 246 NFSVTGGKW-------IVSGS--EDNMVYIWNLQTKEI-VQKLQGHTDVV 285
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 60/125 (48%), Gaps = 3/125 (2%)
Query: 96 HKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYA 155
H + V+ V F WL S S D ++++ + K + + DV ++ S
Sbjct: 25 HTKAVSSVKFS-PNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNL- 82
Query: 156 FASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSI 215
S S++ T++ WDV KC HS +F C+++P+ + + S D+++++WD+
Sbjct: 83 LVSASDDKTLKIWDVSS-GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 141
Query: 216 KPSLE 220
L+
Sbjct: 142 GMCLK 146
Score = 32.3 bits (72), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 18/83 (21%), Positives = 38/83 (45%), Gaps = 5/83 (6%)
Query: 177 FYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSLEYSINT-IASVSRIKWR 235
+ H+ + + + P WLA++S DK IK+W + E +I+ +S + W
Sbjct: 19 MFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWG-AYDGKFEKTISGHKLGISDVAWS 77
Query: 236 PQRKFHLASCSLVVDSSVNVWDI 258
+++ D ++ +WD+
Sbjct: 78 SDSNLLVSASD---DKTLKIWDV 97
Score = 32.0 bits (71), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 21/106 (19%), Positives = 50/106 (47%), Gaps = 6/106 (5%)
Query: 66 HIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKV--SFHYVESNWLISGSQDGTMR 123
+I + + +W+ S+ K + + HK + +F W++SGS+D +
Sbjct: 209 YILAATLDNTLKLWDY---SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVY 265
Query: 124 LFDIRCQESTKIFHSNTESVRDVEFNP-HSPYAFASVSENGTIQQW 168
+++++ +E + +T+ V +P + A A++ + TI+ W
Sbjct: 266 IWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 311
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 55/230 (23%), Positives = 102/230 (44%), Gaps = 25/230 (10%)
Query: 55 NDVAWSCIEENHIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLI 114
+DVAWS + N + + + + + +W+ +S K + H V +F+ +SN ++
Sbjct: 93 SDVAWSS-DSNLLVSASDDKTLKIWD---VSSGKCLKTLKGHSNYVFCCNFN-PQSNLIV 147
Query: 115 SGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPE 174
SGS D ++R++D++ + K ++++ V V FN +S S +G + WD +
Sbjct: 148 SGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS-SYDGLCRIWDTASGQ 206
Query: 175 KCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSL---------EYSINT 225
+ P+ + P ++ A+ D T+K+WD S L +Y I
Sbjct: 207 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFA 266
Query: 226 IASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTEHKDVV 275
SV+ KW S D+ V +W+++ I + H DVV
Sbjct: 267 NFSVTGGKWI---------VSGSEDNLVYIWNLQTKEI-VQKLQGHTDVV 306
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 60/125 (48%), Gaps = 3/125 (2%)
Query: 96 HKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYA 155
H + V+ V F WL S S D ++++ + K + + DV ++ S
Sbjct: 46 HTKAVSSVKFS-PNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNL- 103
Query: 156 FASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSI 215
S S++ T++ WDV KC HS +F C+++P+ + + S D+++++WD+
Sbjct: 104 LVSASDDKTLKIWDVSS-GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 162
Query: 216 KPSLE 220
L+
Sbjct: 163 GKCLK 167
Score = 32.0 bits (71), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 18/82 (21%), Positives = 38/82 (46%), Gaps = 5/82 (6%)
Query: 178 YQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSLEYSINT-IASVSRIKWRP 236
+ H+ + + + P WLA++S DK IK+W + E +I+ +S + W
Sbjct: 41 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWG-AYDGKFEKTISGHKLGISDVAWSS 99
Query: 237 QRKFHLASCSLVVDSSVNVWDI 258
+++ D ++ +WD+
Sbjct: 100 DSNLLVSASD---DKTLKIWDV 118
Score = 31.6 bits (70), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 21/106 (19%), Positives = 50/106 (47%), Gaps = 6/106 (5%)
Query: 66 HIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKV--SFHYVESNWLISGSQDGTMR 123
+I + + +W+ S+ K + + HK + +F W++SGS+D +
Sbjct: 230 YILAATLDNTLKLWDY---SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVY 286
Query: 124 LFDIRCQESTKIFHSNTESVRDVEFNP-HSPYAFASVSENGTIQQW 168
+++++ +E + +T+ V +P + A A++ + TI+ W
Sbjct: 287 IWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 332
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/200 (23%), Positives = 91/200 (45%), Gaps = 17/200 (8%)
Query: 60 SCIEENHIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQD 119
S + +N I +G+T+ + VWN + H TV + H ++SGS+D
Sbjct: 165 SQMRDNIIISGSTDRTLKVWN---AETGECIHTLYGHTSTVRCMHLH---EKRVVSGSRD 218
Query: 120 GTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQ 179
T+R++DI + + + +VR V+++ S + + ++ WD E C +
Sbjct: 219 ATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRR---VVSGAYDFMVKVWD-PETETCLHT 274
Query: 180 FTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSLEYSINTIASVSRIKWRPQRK 239
H+ +++ + H + + S D +I+VWD+ I+T+ + + K
Sbjct: 275 LQGHTNRVYSLQFDGIH--VVSGSLDTSIRVWDVETGN----CIHTLTGHQSLTSGMELK 328
Query: 240 FHLASCSLVVDSSVNVWDIR 259
++ S DS+V +WDI+
Sbjct: 329 DNIL-VSGNADSTVKIWDIK 347
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 42/72 (58%), Gaps = 7/72 (9%)
Query: 62 IEENHIATGATNGAVVVWNL--GQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQD 119
+++N + +G + V +W++ GQ ++ Q N H+ V + F+ N++I+ S D
Sbjct: 327 LKDNILVSGNADSTVKIWDIKTGQCLQTLQGP--NKHQSAVTCLQFN---KNFVITSSDD 381
Query: 120 GTMRLFDIRCQE 131
GT++L+D++ E
Sbjct: 382 GTVKLWDLKTGE 393
Score = 32.3 bits (72), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 31/150 (20%), Positives = 64/150 (42%), Gaps = 15/150 (10%)
Query: 67 IATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFD 126
+ +GA + V VW+ + E + + N+V + ++SGS D ++R++D
Sbjct: 252 VVSGAYDFMVKVWD------PETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWD 305
Query: 127 IRCQESTKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFTA---H 183
+ E+ H+ T S + + T++ WD++ + C H
Sbjct: 306 V---ETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQ-CLQTLQGPNKH 361
Query: 184 SGPIFACDWHPEHAWLATASRDKTIKVWDL 213
+ ++ ++ T+S D T+K+WDL
Sbjct: 362 QSAVTCLQFNKN--FVITSSDDGTVKLWDL 389
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/154 (23%), Positives = 66/154 (42%), Gaps = 7/154 (4%)
Query: 109 ESNWLISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQW 168
E N+L G+ ++L+D++ Q+ + S++ V + +N Y +S S +G I
Sbjct: 169 EGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNS---YILSSGSRSGHIHHH 225
Query: 169 DVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSLEYSINTI-- 226
DVR E + HS + W P+ LA+ D + VW + + T
Sbjct: 226 DVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQ 285
Query: 227 --ASVSRIKWRPQRKFHLASCSLVVDSSVNVWDI 258
+V + W P + LA+ D + +W++
Sbjct: 286 HQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNV 319
Score = 44.3 bits (103), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 65/132 (49%), Gaps = 16/132 (12%)
Query: 156 FASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSI 215
A + + +Q WDV++ +K T+HS + + W+ L++ SR I D+ +
Sbjct: 173 LAVGTSSAEVQLWDVQQ-QKRLRNMTSHSARVGSLSWNSYI--LSSGSRSGHIHHHDVRV 229
Query: 216 KPSLEYSINTIAS----VSRIKWRPQRKFHLASCSLVVDSSVNVWDI---RRPYIPLASF 268
E+ + T++ V ++W P + HLAS D+ VNVW ++PL +F
Sbjct: 230 A---EHHVATLSGHSQEVCGLRWAPDGR-HLASGG--NDNLVNVWPSAPGEGGWVPLQTF 283
Query: 269 TEHKDVVSGLAW 280
T+H+ V +AW
Sbjct: 284 TQHQGAVKAVAW 295
Score = 28.5 bits (62), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 32/154 (20%), Positives = 68/154 (44%), Gaps = 14/154 (9%)
Query: 66 HIATGATNGAVVVWNLGQISRS-KQERVFNDHKRTVNKVSFHYVESNWLISG--SQDGTM 122
H+A+G + V VW + F H+ V V++ +SN L +G + D +
Sbjct: 255 HLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHI 314
Query: 123 RLFDIRCQESTKIFHSNTESVRDVEFNPH-----SPYAFASVSENGTIQQWDVRRPEKCF 177
R++++ ++++ V + ++PH S + FA + W K
Sbjct: 315 RIWNVCSGACLSAVDAHSQ-VCSILWSPHYKELISGHGFA----QNQLVIWKYPTMAK-V 368
Query: 178 YQFTAHSGPIFACDWHPEHAWLATASRDKTIKVW 211
+ H+ + + P+ A +A+A+ D+T+++W
Sbjct: 369 AELKGHTSRVLSLTMSPDGATVASAAADETLRLW 402
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/154 (23%), Positives = 66/154 (42%), Gaps = 7/154 (4%)
Query: 109 ESNWLISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQW 168
E N+L G+ ++L+D++ Q+ + S++ V + +N Y +S S +G I
Sbjct: 158 EGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNS---YILSSGSRSGHIHHH 214
Query: 169 DVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSLEYSINTI-- 226
DVR E + HS + W P+ LA+ D + VW + + T
Sbjct: 215 DVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQ 274
Query: 227 --ASVSRIKWRPQRKFHLASCSLVVDSSVNVWDI 258
+V + W P + LA+ D + +W++
Sbjct: 275 HQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNV 308
Score = 44.3 bits (103), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 65/132 (49%), Gaps = 16/132 (12%)
Query: 156 FASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSI 215
A + + +Q WDV++ +K T+HS + + W+ L++ SR I D+ +
Sbjct: 162 LAVGTSSAEVQLWDVQQ-QKRLRNMTSHSARVGSLSWNSYI--LSSGSRSGHIHHHDVRV 218
Query: 216 KPSLEYSINTIAS----VSRIKWRPQRKFHLASCSLVVDSSVNVWDI---RRPYIPLASF 268
E+ + T++ V ++W P + HLAS D+ VNVW ++PL +F
Sbjct: 219 A---EHHVATLSGHSQEVCGLRWAPDGR-HLASGG--NDNLVNVWPSAPGEGGWVPLQTF 272
Query: 269 TEHKDVVSGLAW 280
T+H+ V +AW
Sbjct: 273 TQHQGAVKAVAW 284
Score = 28.5 bits (62), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 32/154 (20%), Positives = 68/154 (44%), Gaps = 14/154 (9%)
Query: 66 HIATGATNGAVVVWNLGQISRS-KQERVFNDHKRTVNKVSFHYVESNWLISG--SQDGTM 122
H+A+G + V VW + F H+ V V++ +SN L +G + D +
Sbjct: 244 HLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHI 303
Query: 123 RLFDIRCQESTKIFHSNTESVRDVEFNPH-----SPYAFASVSENGTIQQWDVRRPEKCF 177
R++++ ++++ V + ++PH S + FA + W K
Sbjct: 304 RIWNVCSGACLSAVDAHSQ-VCSILWSPHYKELISGHGFA----QNQLVIWKYPTMAK-V 357
Query: 178 YQFTAHSGPIFACDWHPEHAWLATASRDKTIKVW 211
+ H+ + + P+ A +A+A+ D+T+++W
Sbjct: 358 AELKGHTSRVLSLTMSPDGATVASAAADETLRLW 391
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 55/230 (23%), Positives = 102/230 (44%), Gaps = 25/230 (10%)
Query: 55 NDVAWSCIEENHIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLI 114
+DVAWS + N + + + + + +W+ +S K + H V +F+ +SN ++
Sbjct: 72 SDVAWSS-DSNLLVSASDDKTLKIWD---VSSGKCLKTLKGHSNYVFCCNFN-PQSNLIV 126
Query: 115 SGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPE 174
SGS D ++R++D++ K ++++ V V FN +S S +G + WD +
Sbjct: 127 SGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSS-SYDGLCRIWDTASGQ 185
Query: 175 KCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSL---------EYSINT 225
+ P+ + P ++ A+ D +K+WD S L +Y I
Sbjct: 186 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNDLKLWDYSKGKCLKTYTGHKNEKYCIFA 245
Query: 226 IASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTEHKDVV 275
SV+ KW + S S D+ V +W+++ I + H DVV
Sbjct: 246 NFSVTGGKW-------IVSGS--EDNMVYIWNLQTKEI-VQKLQGHTDVV 285
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 60/125 (48%), Gaps = 3/125 (2%)
Query: 96 HKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYA 155
H + V+ V F WL S S D ++++ + K + + DV ++ S
Sbjct: 25 HTKAVSSVKFS-PNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNL- 82
Query: 156 FASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSI 215
S S++ T++ WDV KC HS +F C+++P+ + + S D+++++WD+
Sbjct: 83 LVSASDDKTLKIWDVSS-GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 141
Query: 216 KPSLE 220
L+
Sbjct: 142 GMCLK 146
Score = 32.3 bits (72), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 18/83 (21%), Positives = 38/83 (45%), Gaps = 5/83 (6%)
Query: 177 FYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSLEYSINT-IASVSRIKWR 235
+ H+ + + + P WLA++S DK IK+W + E +I+ +S + W
Sbjct: 19 MFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWG-AYDGKFEKTISGHKLGISDVAWS 77
Query: 236 PQRKFHLASCSLVVDSSVNVWDI 258
+++ D ++ +WD+
Sbjct: 78 SDSNLLVSASD---DKTLKIWDV 97
Score = 32.0 bits (71), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 20/91 (21%), Positives = 44/91 (48%), Gaps = 3/91 (3%)
Query: 81 LGQISRSKQERVFNDHKRTVNKV--SFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHS 138
L S+ K + + HK + +F W++SGS+D + +++++ +E +
Sbjct: 221 LWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQG 280
Query: 139 NTESVRDVEFNP-HSPYAFASVSENGTIQQW 168
+T+ V +P + A A++ + TI+ W
Sbjct: 281 HTDVVISTACHPTENIIASAALENDKTIKLW 311
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 58/241 (24%), Positives = 104/241 (43%), Gaps = 39/241 (16%)
Query: 44 VGKNINLNFSCNDVAWSCIEENH---IATGATNGAVVVWNLGQISRSKQERVFNDHKRTV 100
+ K L S +D ++ H + +G+T+ V VW+ I + VF H TV
Sbjct: 150 INKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWD---IKKGCCTHVFEGHNSTV 206
Query: 101 NKVSF-HYVESNWLISGSQDGTMRLFDIRCQESTK----------IFHSNTE-------- 141
+ Y ++++GS+D T+ ++ + + S +FH+ E
Sbjct: 207 RCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVL 266
Query: 142 -----SVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEH 196
SVR V + + S S + T+ WDV + KC Y + H+ I++ + E
Sbjct: 267 RGHXASVRTVSGHGN---IVVSGSYDNTLIVWDVAQ-XKCLYILSGHTDRIYSTIYDHER 322
Query: 197 AWLATASRDKTIKVWDLSIKPSLEYSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVW 256
+AS D TI++WDL L Y++ ++ + R KF +++ + D S+ W
Sbjct: 323 KRCISASXDTTIRIWDLE-NGELXYTLQGHTALVGL-LRLSDKFLVSAAA---DGSIRGW 377
Query: 257 D 257
D
Sbjct: 378 D 378
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 55/113 (48%), Gaps = 5/113 (4%)
Query: 109 ESNWLISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQW 168
E N++I+G+ D +R++D ++ + V +++ H S S + T++ W
Sbjct: 131 EDNYVITGADDKXIRVYDSINKKFLLQLSGHDGGVWALKY-AHGG-ILVSGSTDRTVRVW 188
Query: 169 DVRRPEKCFYQFTAHSGPIFACDW--HPEHAWLATASRDKTIKVWDLSIKPSL 219
D+++ C + F H+ + D + ++ T SRD T+ VW L + S+
Sbjct: 189 DIKKG-CCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSV 240
Score = 32.3 bits (72), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 39/78 (50%), Gaps = 9/78 (11%)
Query: 62 IEENHIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGT 121
+ + + + A +G++ W+ SR F+ H ++ ++ YV N L+SGS++
Sbjct: 360 LSDKFLVSAAADGSIRGWDANDYSRK-----FSYHHTNLSAITTFYVSDNILVSGSENQ- 413
Query: 122 MRLFDIRCQESTKIFHSN 139
F+I S K+ H+N
Sbjct: 414 ---FNIYNLRSGKLVHAN 428
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/168 (23%), Positives = 77/168 (45%), Gaps = 7/168 (4%)
Query: 93 FNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQES-TKIFHSNTESVRDVEFNPH 151
F H + ++ H + +++SGS D T++L++ + + F + V V FNP
Sbjct: 93 FEAHPDYIRSIAVHPTKP-YVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPK 151
Query: 152 SPYAFASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHP--EHAWLATASRDKTIK 209
P FAS + T++ W + + F T + D++P + ++ TAS D TIK
Sbjct: 152 DPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIK 211
Query: 210 VWDLSIKPSLEYSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWD 257
+WD K + +++VS + P ++ D ++ +W+
Sbjct: 212 IWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSE---DGTLKIWN 256
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 35/152 (23%), Positives = 71/152 (46%), Gaps = 6/152 (3%)
Query: 111 NWLISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDV 170
NW+I GS D +R+F+ E F ++ + +R + +P PY + S++ T++ W+
Sbjct: 68 NWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSG-SDDLTVKLWNW 126
Query: 171 RRPEKCFYQFTAHSGPIFACDWHPEH-AWLATASRDKTIKVWDLSIK-PSLEYSINTIAS 228
F H + ++P+ + A+ D+T+KVW L P+ +
Sbjct: 127 ENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERG 186
Query: 229 VSRIKWRP-QRKFHLASCSLVVDSSVNVWDIR 259
V+ + + P K ++ + S D ++ +WD +
Sbjct: 187 VNYVDYYPLPDKPYMITAS--DDLTIKIWDYQ 216
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 71/154 (46%), Gaps = 11/154 (7%)
Query: 66 HIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLF 125
++ +G+ + V +WN + E+ F H+ V V+F+ + + SG D T++++
Sbjct: 111 YVLSGSDDLTVKLWNWE--NNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVW 168
Query: 126 DIRCQESTKIFHSNTESVRDVEFN-----PHSPYAFASVSENGTIQQWDVRRPEKCFYQF 180
+ +ST F T R V + P PY + S++ TI+ WD + + C
Sbjct: 169 SL--GQSTPNFTLTTGQERGVNYVDYYPLPDKPYMI-TASDDLTIKIWDYQT-KSCVATL 224
Query: 181 TAHSGPIFACDWHPEHAWLATASRDKTIKVWDLS 214
H + +HP + + S D T+K+W+ S
Sbjct: 225 EGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSS 258
Score = 41.2 bits (95), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 59/114 (51%), Gaps = 4/114 (3%)
Query: 57 VAWSCIEENHIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYV-ESNWLIS 115
VA++ + + A+G + V VW+LGQ + + +R VN V ++ + + ++I+
Sbjct: 146 VAFNPKDPSTFASGCLDRTVKVWSLGQ--STPNFTLTTGQERGVNYVDYYPLPDKPYMIT 203
Query: 116 GSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWD 169
S D T++++D + + + +V F+P P S SE+GT++ W+
Sbjct: 204 ASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLP-IIISGSEDGTLKIWN 256
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/154 (23%), Positives = 66/154 (42%), Gaps = 7/154 (4%)
Query: 109 ESNWLISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQW 168
E N+L G+ ++L+D++ Q+ + S++ V + +N Y +S S +G I
Sbjct: 78 EGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNS---YILSSGSRSGHIHHH 134
Query: 169 DVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSLEYSINTI-- 226
DVR E + HS + W P+ LA+ D + VW + + T
Sbjct: 135 DVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQ 194
Query: 227 --ASVSRIKWRPQRKFHLASCSLVVDSSVNVWDI 258
+V + W P + LA+ D + +W++
Sbjct: 195 HQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNV 228
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 65/132 (49%), Gaps = 16/132 (12%)
Query: 156 FASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSI 215
A + + +Q WDV++ +K T+HS + + W+ L++ SR I D+ +
Sbjct: 82 LAVGTSSAEVQLWDVQQ-QKRLRNMTSHSARVGSLSWNSYI--LSSGSRSGHIHHHDVRV 138
Query: 216 KPSLEYSINTIAS----VSRIKWRPQRKFHLASCSLVVDSSVNVWDI---RRPYIPLASF 268
E+ + T++ V ++W P + HLAS D+ VNVW ++PL +F
Sbjct: 139 A---EHHVATLSGHSQEVCGLRWAPDGR-HLASGG--NDNLVNVWPSAPGEGGWVPLQTF 192
Query: 269 TEHKDVVSGLAW 280
T+H+ V +AW
Sbjct: 193 TQHQGAVKAVAW 204
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 32/157 (20%), Positives = 69/157 (43%), Gaps = 14/157 (8%)
Query: 63 EENHIATGATNGAVVVWNLGQISRS-KQERVFNDHKRTVNKVSFHYVESNWLISG--SQD 119
+ H+A+G + V VW + F H+ V V++ +SN L +G + D
Sbjct: 161 DGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSD 220
Query: 120 GTMRLFDIRCQESTKIFHSNTESVRDVEFNPH-----SPYAFASVSENGTIQQWDVRRPE 174
+R++++ ++++ V + ++PH S + FA + W
Sbjct: 221 RHIRIWNVCSGACLSAVDAHSQ-VCSILWSPHYKELISGHGFA----QNQLVIWKYPTMA 275
Query: 175 KCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVW 211
K + H+ + + P+ A +A+A+ D+T+++W
Sbjct: 276 K-VAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 311
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/168 (23%), Positives = 77/168 (45%), Gaps = 7/168 (4%)
Query: 93 FNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQES-TKIFHSNTESVRDVEFNPH 151
F H + ++ H + +++SGS D T++L++ + + F + V V FNP
Sbjct: 93 FEAHPDYIRSIAVHPTKP-YVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPK 151
Query: 152 SPYAFASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHP--EHAWLATASRDKTIK 209
P FAS + T++ W + + F T + D++P + ++ TAS D TIK
Sbjct: 152 DPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIK 211
Query: 210 VWDLSIKPSLEYSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWD 257
+WD K + +++VS + P ++ D ++ +W+
Sbjct: 212 IWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSE---DGTLKIWN 256
Score = 51.2 bits (121), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 35/152 (23%), Positives = 71/152 (46%), Gaps = 6/152 (3%)
Query: 111 NWLISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDV 170
NW+I GS D +R+F+ E F ++ + +R + +P PY + S++ T++ W+
Sbjct: 68 NWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSG-SDDLTVKLWNW 126
Query: 171 RRPEKCFYQFTAHSGPIFACDWHPEH-AWLATASRDKTIKVWDLS-IKPSLEYSINTIAS 228
F H + ++P+ + A+ D+T+KVW L P+ +
Sbjct: 127 ENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERG 186
Query: 229 VSRIKWRP-QRKFHLASCSLVVDSSVNVWDIR 259
V+ + + P K ++ + S D ++ +WD +
Sbjct: 187 VNYVDYYPLPDKPYMITAS--DDLTIKIWDYQ 216
Score = 44.3 bits (103), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 71/154 (46%), Gaps = 11/154 (7%)
Query: 66 HIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLF 125
++ +G+ + V +WN + E+ F H+ V V+F+ + + SG D T++++
Sbjct: 111 YVLSGSDDLTVKLWNWE--NNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVW 168
Query: 126 DIRCQESTKIFHSNTESVRDVEFN-----PHSPYAFASVSENGTIQQWDVRRPEKCFYQF 180
+ +ST F T R V + P PY + S++ TI+ WD + + C
Sbjct: 169 SL--GQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITA-SDDLTIKIWDYQT-KSCVATL 224
Query: 181 TAHSGPIFACDWHPEHAWLATASRDKTIKVWDLS 214
H + +HP + + S D T+K+W+ S
Sbjct: 225 EGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSS 258
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 59/114 (51%), Gaps = 4/114 (3%)
Query: 57 VAWSCIEENHIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYV-ESNWLIS 115
VA++ + + A+G + V VW+LGQ + + +R VN V ++ + + ++I+
Sbjct: 146 VAFNPKDPSTFASGCLDRTVKVWSLGQ--STPNFTLTTGQERGVNYVDYYPLPDKPYMIT 203
Query: 116 GSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWD 169
S D T++++D + + + +V F+P P S SE+GT++ W+
Sbjct: 204 ASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLP-IIISGSEDGTLKIWN 256
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/168 (23%), Positives = 77/168 (45%), Gaps = 7/168 (4%)
Query: 93 FNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQES-TKIFHSNTESVRDVEFNPH 151
F H + ++ H + +++SGS D T++L++ + + F + V V FNP
Sbjct: 93 FEAHPDYIRSIAVHPTKP-YVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPK 151
Query: 152 SPYAFASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHP--EHAWLATASRDKTIK 209
P FAS + T++ W + + F T + D++P + ++ TAS D TIK
Sbjct: 152 DPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIK 211
Query: 210 VWDLSIKPSLEYSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWD 257
+WD K + +++VS + P ++ D ++ +W+
Sbjct: 212 IWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSE---DGTLKIWN 256
Score = 51.2 bits (121), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 35/152 (23%), Positives = 71/152 (46%), Gaps = 6/152 (3%)
Query: 111 NWLISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDV 170
NW+I GS D +R+F+ E F ++ + +R + +P PY + S++ T++ W+
Sbjct: 68 NWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSG-SDDLTVKLWNW 126
Query: 171 RRPEKCFYQFTAHSGPIFACDWHPEH-AWLATASRDKTIKVWDLS-IKPSLEYSINTIAS 228
F H + ++P+ + A+ D+T+KVW L P+ +
Sbjct: 127 ENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERG 186
Query: 229 VSRIKWRP-QRKFHLASCSLVVDSSVNVWDIR 259
V+ + + P K ++ + S D ++ +WD +
Sbjct: 187 VNYVDYYPLPDKPYMITAS--DDLTIKIWDYQ 216
Score = 44.3 bits (103), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 71/154 (46%), Gaps = 11/154 (7%)
Query: 66 HIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLF 125
++ +G+ + V +WN + E+ F H+ V V+F+ + + SG D T++++
Sbjct: 111 YVLSGSDDLTVKLWNWE--NNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVW 168
Query: 126 DIRCQESTKIFHSNTESVRDVEFN-----PHSPYAFASVSENGTIQQWDVRRPEKCFYQF 180
+ +ST F T R V + P PY + S++ TI+ WD + + C
Sbjct: 169 SL--GQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITA-SDDLTIKIWDYQT-KSCVATL 224
Query: 181 TAHSGPIFACDWHPEHAWLATASRDKTIKVWDLS 214
H + +HP + + S D T+K+W+ S
Sbjct: 225 EGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSS 258
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 59/114 (51%), Gaps = 4/114 (3%)
Query: 57 VAWSCIEENHIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYV-ESNWLIS 115
VA++ + + A+G + V VW+LGQ + + +R VN V ++ + + ++I+
Sbjct: 146 VAFNPKDPSTFASGCLDRTVKVWSLGQ--STPNFTLTTGQERGVNYVDYYPLPDKPYMIT 203
Query: 116 GSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWD 169
S D T++++D + + + +V F+P P S SE+GT++ W+
Sbjct: 204 ASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLP-IIISGSEDGTLKIWN 256
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 58/241 (24%), Positives = 104/241 (43%), Gaps = 39/241 (16%)
Query: 44 VGKNINLNFSCNDVAWSCIEENH---IATGATNGAVVVWNLGQISRSKQERVFNDHKRTV 100
+ K L S +D ++ H + +G+T+ V VW+ I + VF H TV
Sbjct: 150 INKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWD---IKKGCCTHVFEGHNSTV 206
Query: 101 NKVSF-HYVESNWLISGSQDGTMRLFDIRCQESTK----------IFHSNTE-------- 141
+ Y ++++GS+D T+ ++ + + S +FH+ E
Sbjct: 207 RCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVL 266
Query: 142 -----SVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEH 196
SVR V + + S S + T+ WDV + KC Y + H+ I++ + E
Sbjct: 267 RGHMASVRTVSGHGN---IVVSGSYDNTLIVWDVAQM-KCLYILSGHTDRIYSTIYDHER 322
Query: 197 AWLATASRDKTIKVWDLSIKPSLEYSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVW 256
+AS D TI++WDL L Y++ ++ + R KF +++ + D S+ W
Sbjct: 323 KRCISASMDTTIRIWDLE-NGELMYTLQGHTALVGL-LRLSDKFLVSAAA---DGSIRGW 377
Query: 257 D 257
D
Sbjct: 378 D 378
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 55/113 (48%), Gaps = 5/113 (4%)
Query: 109 ESNWLISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQW 168
E N++I+G+ D +R++D ++ + V +++ H S S + T++ W
Sbjct: 131 EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKY-AHGG-ILVSGSTDRTVRVW 188
Query: 169 DVRRPEKCFYQFTAHSGPIFACDW--HPEHAWLATASRDKTIKVWDLSIKPSL 219
D+++ C + F H+ + D + ++ T SRD T+ VW L + S+
Sbjct: 189 DIKKG-CCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSV 240
Score = 32.3 bits (72), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 39/78 (50%), Gaps = 9/78 (11%)
Query: 62 IEENHIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGT 121
+ + + + A +G++ W+ SR F+ H ++ ++ YV N L+SGS++
Sbjct: 360 LSDKFLVSAAADGSIRGWDANDYSRK-----FSYHHTNLSAITTFYVSDNILVSGSENQ- 413
Query: 122 MRLFDIRCQESTKIFHSN 139
F+I S K+ H+N
Sbjct: 414 ---FNIYNLRSGKLVHAN 428
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 40/168 (23%), Positives = 77/168 (45%), Gaps = 7/168 (4%)
Query: 93 FNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQES-TKIFHSNTESVRDVEFNPH 151
F H + ++ H + +++SGS D T++L++ + + F + V V FNP
Sbjct: 93 FEAHPDYIRSIAVHPTKP-YVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPK 151
Query: 152 SPYAFASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHP--EHAWLATASRDKTIK 209
P FAS + T++ W + + F T + D++P + ++ TAS D TIK
Sbjct: 152 DPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIK 211
Query: 210 VWDLSIKPSLEYSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWD 257
+WD K + +++VS + P ++ D ++ +W+
Sbjct: 212 IWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSE---DGTLKIWN 256
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 71/152 (46%), Gaps = 6/152 (3%)
Query: 111 NWLISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDV 170
NW+I GS D +R+F+ E F ++ + +R + +P PY S S++ T++ W+
Sbjct: 68 NWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVL-SGSDDLTVKLWNW 126
Query: 171 RRPEKCFYQFTAHSGPIFACDWHPEH-AWLATASRDKTIKVWDLSIK-PSLEYSINTIAS 228
F H + ++P+ + A+ D+T+KVW L P+ +
Sbjct: 127 ENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERG 186
Query: 229 VSRIKWRP-QRKFHLASCSLVVDSSVNVWDIR 259
V+ + + P K ++ + S D ++ +WD +
Sbjct: 187 VNYVDYYPLPDKPYMITAS--DDLTIKIWDYQ 216
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 71/154 (46%), Gaps = 11/154 (7%)
Query: 66 HIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLF 125
++ +G+ + V +WN + E+ F H+ V V+F+ + + SG D T++++
Sbjct: 111 YVLSGSDDLTVKLWNWE--NNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVW 168
Query: 126 DIRCQESTKIFHSNTESVRDVEFN-----PHSPYAFASVSENGTIQQWDVRRPEKCFYQF 180
+ +ST F T R V + P PY + S++ TI+ WD + + C
Sbjct: 169 SL--GQSTPNFTLTTGQERGVNYVDYYPLPDKPYMI-TASDDLTIKIWDYQ-TKSCVATL 224
Query: 181 TAHSGPIFACDWHPEHAWLATASRDKTIKVWDLS 214
H + +HP + + S D T+K+W+ S
Sbjct: 225 EGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSS 258
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 59/114 (51%), Gaps = 4/114 (3%)
Query: 57 VAWSCIEENHIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYV-ESNWLIS 115
VA++ + + A+G + V VW+LGQ + + +R VN V ++ + + ++I+
Sbjct: 146 VAFNPKDPSTFASGCLDRTVKVWSLGQ--STPNFTLTTGQERGVNYVDYYPLPDKPYMIT 203
Query: 116 GSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWD 169
S D T++++D + + + +V F+P P S SE+GT++ W+
Sbjct: 204 ASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLP-IIISGSEDGTLKIWN 256
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 67/152 (44%), Gaps = 14/152 (9%)
Query: 65 NHIATGATNGAVVVWNLGQISRSKQ-ERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMR 123
N +G + +VW++ RS Q + F H+ VN V + Y + SGS D T R
Sbjct: 211 NTFVSGGCDKKAMVWDM----RSGQCVQAFETHESDVNSVRY-YPSGDAFASGSDDATCR 265
Query: 124 LFDIRCQESTKIFHSNTESV----RDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQ 179
L+D+R I+ + ES+ V+F+ FA ++ TI WDV + +
Sbjct: 266 LYDLRADREVAIY--SKESIIFGASSVDFSLSGRLLFAGYNDY-TINVWDVLKGSRVSIL 322
Query: 180 FTAHSGPIFACDWHPEHAWLATASRDKTIKVW 211
F H + P+ + S D T++VW
Sbjct: 323 F-GHENRVSTLRVSPDGTAFCSGSWDHTLRVW 353
Score = 47.8 bits (112), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 42/182 (23%), Positives = 79/182 (43%), Gaps = 8/182 (4%)
Query: 113 LISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNP-HSPYAFASVSENGTIQQWDVR 171
+++ S DGT L+D+ + + FH + V ++ P + F S + WD+R
Sbjct: 169 ILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMR 228
Query: 172 RPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSLE-YSINTIA-SV 229
+ C F H + + ++P A+ S D T +++DL + YS +I
Sbjct: 229 SGQ-CVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGA 287
Query: 230 SRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTEHKDVVSGLAWRGDPQLFIA 289
S + + + A + D ++NVWD+ + ++ H++ VS L D F +
Sbjct: 288 SSVDFSLSGRLLFAGYN---DYTINVWDVLKGS-RVSILFGHENRVSTLRVSPDGTAFCS 343
Query: 290 SS 291
S
Sbjct: 344 GS 345
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 37/156 (23%), Positives = 62/156 (39%), Gaps = 17/156 (10%)
Query: 183 HSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSLEYSINTIASVSRIKWRPQR---K 239
H+ + AC + + TAS D T +WD+ L+ A V + P
Sbjct: 153 HTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNT 212
Query: 240 FHLASCSLVVDSSVNVWDIRRPYIPLASFTEHKDVVSGLAWRGDPQLFI-----ASSRVS 294
F C D VWD+R + +F H+ V+ + + F A+ R+
Sbjct: 213 FVSGGC----DKKAMVWDMRSGQC-VQAFETHESDVNSVRYYPSGDAFASGSDDATCRLY 267
Query: 295 IIPRAKNIKIFIASSRVSIIPRAENIKIFITSSRVL 330
+ + + I+ S+ SII A ++ F S R+L
Sbjct: 268 DLRADREVAIY---SKESIIFGASSVD-FSLSGRLL 299
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/182 (22%), Positives = 71/182 (39%), Gaps = 6/182 (3%)
Query: 76 VVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKI 135
V VWN S S D V V + + + ++L G +G + ++D+ Q +
Sbjct: 115 VYVWNADSGSVSALAET--DESTYVASVKWSH-DGSFLSVGLGNGLVDIYDVESQTKLRT 171
Query: 136 FHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPE 195
+ V + +N H +S S +G I DVR HS + W +
Sbjct: 172 MAGHQARVGCLSWNRH---VLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSD 228
Query: 196 HAWLATASRDKTIKVWDLSIKPSLEYSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNV 255
LA+ D +++WD N A+V + W P + LA+ +D ++
Sbjct: 229 GLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHF 288
Query: 256 WD 257
W+
Sbjct: 289 WN 290
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/205 (23%), Positives = 88/205 (42%), Gaps = 12/205 (5%)
Query: 96 HKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQES-----TKIFHSNTESVRDVEFNP 150
H V ++ + N L+S S+D T+ + + + + F ++ V+D
Sbjct: 16 HNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTA 75
Query: 151 HSPYAFASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKV 210
YA S S + T++ WDV E + +F H + + D + + + + SRDKTIKV
Sbjct: 76 DGAYAL-SASWDKTLRLWDVATGE-TYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKV 133
Query: 211 WDLSIKPSLEYSINTIASVSRIKWRPQRKFHLASCSLVV---DSSVNVWDIRRPYIPLAS 267
W + L + VS+++ P K S +++ D V W++ + I A
Sbjct: 134 WTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIE-AD 191
Query: 268 FTEHKDVVSGLAWRGDPQLFIASSR 292
F H ++ L D L ++ +
Sbjct: 192 FIGHNSNINTLTASPDGTLIASAGK 216
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/205 (23%), Positives = 88/205 (42%), Gaps = 12/205 (5%)
Query: 96 HKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQES-----TKIFHSNTESVRDVEFNP 150
H V ++ + N L+S S+D T+ + + + + F ++ V+D
Sbjct: 16 HNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTA 75
Query: 151 HSPYAFASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKV 210
YA S S + T++ WDV E + +F H + + D + + + + SRDKTIKV
Sbjct: 76 DGAYAL-SASWDKTLRLWDVATGE-TYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKV 133
Query: 211 WDLSIKPSLEYSINTIASVSRIKWRPQRKFHLASCSLVV---DSSVNVWDIRRPYIPLAS 267
W + L + VS+++ P K S +++ D V W++ + I A
Sbjct: 134 WTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIE-AD 191
Query: 268 FTEHKDVVSGLAWRGDPQLFIASSR 292
F H ++ L D L ++ +
Sbjct: 192 FIGHNSNINTLTASPDGTLIASAGK 216
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/205 (23%), Positives = 88/205 (42%), Gaps = 12/205 (5%)
Query: 96 HKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQES-----TKIFHSNTESVRDVEFNP 150
H V ++ + N L+S S+D T+ + + + + F ++ V+D
Sbjct: 16 HNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTA 75
Query: 151 HSPYAFASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKV 210
YA S S + T++ WDV E + +F H + + D + + + + SRDKTIKV
Sbjct: 76 DGAYAL-SASWDKTLRLWDVATGE-TYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKV 133
Query: 211 WDLSIKPSLEYSINTIASVSRIKWRPQRKFHLASCSLVV---DSSVNVWDIRRPYIPLAS 267
W + L + VS+++ P K S +++ D V W++ + I A
Sbjct: 134 WTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIE-AD 191
Query: 268 FTEHKDVVSGLAWRGDPQLFIASSR 292
F H ++ L D L ++ +
Sbjct: 192 FIGHNSNINTLTASPDGTLIASAGK 216
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/205 (23%), Positives = 88/205 (42%), Gaps = 12/205 (5%)
Query: 96 HKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQES-----TKIFHSNTESVRDVEFNP 150
H V ++ + N L+S S+D T+ + + + + F ++ V+D
Sbjct: 10 HNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTA 69
Query: 151 HSPYAFASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKV 210
YA S S + T++ WDV E + +F H + + D + + + + SRDKTIKV
Sbjct: 70 DGAYAL-SASWDKTLRLWDVATGE-TYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKV 127
Query: 211 WDLSIKPSLEYSINTIASVSRIKWRPQRKFHLASCSLVV---DSSVNVWDIRRPYIPLAS 267
W + L + VS+++ P K S +++ D V W++ + I A
Sbjct: 128 WTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIE-AD 185
Query: 268 FTEHKDVVSGLAWRGDPQLFIASSR 292
F H ++ L D L ++ +
Sbjct: 186 FIGHNSNINTLTASPDGTLIASAGK 210
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/205 (23%), Positives = 88/205 (42%), Gaps = 12/205 (5%)
Query: 96 HKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQES-----TKIFHSNTESVRDVEFNP 150
H V ++ + N L+S S+D T+ + + + + F ++ V+D
Sbjct: 16 HNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTA 75
Query: 151 HSPYAFASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKV 210
YA S S + T++ WDV E + +F H + + D + + + + SRDKTIKV
Sbjct: 76 DGAYAL-SASWDKTLRLWDVATGE-TYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKV 133
Query: 211 WDLSIKPSLEYSINTIASVSRIKWRPQRKFHLASCSLVV---DSSVNVWDIRRPYIPLAS 267
W + L + VS+++ P K S +++ D V W++ + I A
Sbjct: 134 WTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIE-AD 191
Query: 268 FTEHKDVVSGLAWRGDPQLFIASSR 292
F H ++ L D L ++ +
Sbjct: 192 FIGHNSNINTLTASPDGTLIASAGK 216
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 48/205 (23%), Positives = 89/205 (43%), Gaps = 12/205 (5%)
Query: 96 HKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQES-----TKIFHSNTESVRDVEFNP 150
H V ++ + N L+S S+D T+ + + + + F ++ V+D
Sbjct: 16 HNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTA 75
Query: 151 HSPYAFASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKV 210
YA S S + T++ WDV E + +F H + + D + + + + SRDKTIKV
Sbjct: 76 DGAYAL-SASWDKTLRLWDVATGE-TYQRFVGHKSDVXSVDIDKKASXIISGSRDKTIKV 133
Query: 211 WDLSIKPSLEYSINTIASVSRIKWRPQRKFHLASCSLVV---DSSVNVWDIRRPYIPLAS 267
W + + L + VS+++ P K S +++ D V W++ + I A
Sbjct: 134 WTIKGQ-CLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKAWNLNQFQIE-AD 191
Query: 268 FTEHKDVVSGLAWRGDPQLFIASSR 292
F H ++ L D L ++ +
Sbjct: 192 FIGHNSNINTLTASPDGTLIASAGK 216
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 57/110 (51%), Gaps = 5/110 (4%)
Query: 63 EENHIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLI-SGSQDGT 121
++++IAT + + V +W+ + K +++H VN F ++ L+ +GS D
Sbjct: 675 DDSYIATCSADKKVKIWD---SATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFF 731
Query: 122 MRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVR 171
++L+D+ +E +T SV F+P AS S +GT++ WDVR
Sbjct: 732 LKLWDLNQKECRNTMFGHTNSVNHCRFSPDDEL-LASCSADGTLRLWDVR 780
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 74/159 (46%), Gaps = 18/159 (11%)
Query: 66 HIATGATNGAVVVWNLGQISRSKQERVFND---HKRTVNKVSFHYVESNWLISGSQDGTM 122
++A G +GA+ + L RVF+ HK+ V + F + LIS S+D +
Sbjct: 982 YVAFGDEDGAIKIIEL------PNNRVFSSGVGHKKAVRHIQF-TADGKTLISSSEDSVI 1034
Query: 123 RLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDV--RRPEKCFYQF 180
++++ + + ++ E+V+D S S S +GT++ W+V R E+ F
Sbjct: 1035 QVWNWQTGDYV-FLQAHQETVKDFRLLQDS--RLLSWSFDGTVKVWNVITGRIER---DF 1088
Query: 181 TAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSL 219
T H G + +C + ++ S DKT K+W + L
Sbjct: 1089 TCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPL 1127
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 156 FASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWD 212
AS + T+Q + EK AH + C + + +++AT S DK +K+WD
Sbjct: 637 IASCGADKTLQVFKAETGEK-LLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWD 692
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 27/121 (22%), Positives = 58/121 (47%), Gaps = 8/121 (6%)
Query: 96 HKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYA 155
H+ TV F ++ + L+S S DGT++++++ + F + +V + +
Sbjct: 1050 HQETVK--DFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDAT-K 1106
Query: 156 FASVSENGTIQQW--DVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDL 213
F+S S + T + W D+ P ++ H+G + + + LAT + I++W++
Sbjct: 1107 FSSTSADKTAKIWSFDLLSP---LHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNV 1163
Query: 214 S 214
S
Sbjct: 1164 S 1164
Score = 32.3 bits (72), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 50/203 (24%), Positives = 78/203 (38%), Gaps = 59/203 (29%)
Query: 65 NHI--ATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTM 122
NH+ ATG+ + + +W+L Q + + +F H +VN F + L S S DGT+
Sbjct: 719 NHLLLATGSNDFFLKLWDLNQ--KECRNTMFG-HTNSVNHCRFS-PDDELLASCSADGTL 774
Query: 123 RLFDIRCQESTK------IFHSNTESVRDVE-------------------------FNPH 151
RL+D+R K F S+ + DVE F+ H
Sbjct: 775 RLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIH 834
Query: 152 SPYAFASV--SENGTIQQWD---------VRRPEKCFYQFTAHSGPIFA-CDWH------ 193
+ A + + TIQ D + + C + S A C H
Sbjct: 835 TSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHG 894
Query: 194 ----PEHAWLATASRDKTIKVWD 212
P+ + TAS D+TI+VW+
Sbjct: 895 VMFSPDGSSFLTASDDQTIRVWE 917
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 45/90 (50%), Gaps = 9/90 (10%)
Query: 67 IATGATNGAVVVWNL--GQISRS----KQERVFNDHKRTVNKVSFHYVESNWLISGSQDG 120
+ATG NG + +WN+ GQ+ S E H V V F +S L+S G
Sbjct: 1149 LATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFS-PDSKTLVSAG--G 1205
Query: 121 TMRLFDIRCQESTKIFHSNTESVRDVEFNP 150
++ +++ +S++ F++N +++ + +P
Sbjct: 1206 YLKWWNVATGDSSQTFYTNGTNLKKIHVSP 1235
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 57/110 (51%), Gaps = 5/110 (4%)
Query: 63 EENHIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLI-SGSQDGT 121
++++IAT + + V +W+ + K +++H VN F ++ L+ +GS D
Sbjct: 668 DDSYIATCSADKKVKIWD---SATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFF 724
Query: 122 MRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVR 171
++L+D+ +E +T SV F+P AS S +GT++ WDVR
Sbjct: 725 LKLWDLNQKECRNTMFGHTNSVNHCRFSPDDEL-LASCSADGTLRLWDVR 773
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 74/159 (46%), Gaps = 18/159 (11%)
Query: 66 HIATGATNGAVVVWNLGQISRSKQERVFND---HKRTVNKVSFHYVESNWLISGSQDGTM 122
++A G +GA+ + L RVF+ HK+ V + F + LIS S+D +
Sbjct: 975 YVAFGDEDGAIKIIEL------PNNRVFSSGVGHKKAVRHIQF-TADGKTLISSSEDSVI 1027
Query: 123 RLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDV--RRPEKCFYQF 180
++++ + + ++ E+V+D F S S +GT++ W+V R E+ F
Sbjct: 1028 QVWNWQTGDYV-FLQAHQETVKD--FRLLQDSRLLSWSFDGTVKVWNVITGRIER---DF 1081
Query: 181 TAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSL 219
T H G + +C + ++ S DKT K+W + L
Sbjct: 1082 TCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPL 1120
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 156 FASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWD 212
AS + T+Q + EK AH + C + + +++AT S DK +K+WD
Sbjct: 630 IASCGADKTLQVFKAETGEK-LLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWD 685
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 27/121 (22%), Positives = 58/121 (47%), Gaps = 8/121 (6%)
Query: 96 HKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYA 155
H+ TV F ++ + L+S S DGT++++++ + F + +V + +
Sbjct: 1043 HQETVK--DFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDAT-K 1099
Query: 156 FASVSENGTIQQW--DVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDL 213
F+S S + T + W D+ P ++ H+G + + + LAT + I++W++
Sbjct: 1100 FSSTSADKTAKIWSFDLLSP---LHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNV 1156
Query: 214 S 214
S
Sbjct: 1157 S 1157
Score = 32.3 bits (72), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 50/203 (24%), Positives = 78/203 (38%), Gaps = 59/203 (29%)
Query: 65 NHI--ATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTM 122
NH+ ATG+ + + +W+L Q + + +F H +VN F + L S S DGT+
Sbjct: 712 NHLLLATGSNDFFLKLWDLNQ--KECRNTMFG-HTNSVNHCRFS-PDDELLASCSADGTL 767
Query: 123 RLFDIRCQESTK------IFHSNTESVRDVE-------------------------FNPH 151
RL+D+R K F S+ + DVE F+ H
Sbjct: 768 RLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIH 827
Query: 152 SPYAFASV--SENGTIQQWD---------VRRPEKCFYQFTAHSGPIFA-CDWH------ 193
+ A + + TIQ D + + C + S A C H
Sbjct: 828 TSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHG 887
Query: 194 ----PEHAWLATASRDKTIKVWD 212
P+ + TAS D+TI+VW+
Sbjct: 888 VMFSPDGSSFLTASDDQTIRVWE 910
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 45/90 (50%), Gaps = 9/90 (10%)
Query: 67 IATGATNGAVVVWNL--GQISRS----KQERVFNDHKRTVNKVSFHYVESNWLISGSQDG 120
+ATG NG + +WN+ GQ+ S E H V V F +S L+S G
Sbjct: 1142 LATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFS-PDSKTLVSAG--G 1198
Query: 121 TMRLFDIRCQESTKIFHSNTESVRDVEFNP 150
++ +++ +S++ F++N +++ + +P
Sbjct: 1199 YLKWWNVATGDSSQTFYTNGTNLKKIHVSP 1228
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 71/151 (47%), Gaps = 8/151 (5%)
Query: 65 NHIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRL 124
+IA G NGA+ + L +R Q R HK+TV + F E LIS S D +++
Sbjct: 980 QYIAFGDENGAIEILELVN-NRIFQSRF--QHKKTVWHIQFTADEKT-LISSSDDAEIQV 1035
Query: 125 FDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFTAHS 184
++ + + + E+V+D +S S S +GT++ W++ K F H
Sbjct: 1036 WNWQLDKCI-FLRGHQETVKDFRLLKNS--RLLSWSFDGTVKVWNIITGNK-EKDFVCHQ 1091
Query: 185 GPIFACDWHPEHAWLATASRDKTIKVWDLSI 215
G + +CD + ++ S DKT K+W +
Sbjct: 1092 GTVLSCDISHDATKFSSTSADKTAKIWSFDL 1122
Score = 44.3 bits (103), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 64/147 (43%), Gaps = 7/147 (4%)
Query: 113 LISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRR 172
+ S D T+++F E ++ + V F+ + A+ S + ++ W+
Sbjct: 636 IASCGADKTLQVFKAETGEKLLEIKAHEDEVLCCAFSTDDRF-IATCSVDKKVKIWNSMT 694
Query: 173 PEKCFYQFTAHSGPIFACDW--HPEHAWLATASRDKTIKVWDLSIKPSLEYSINTIASVS 230
E + + HS + C + H LAT S D +K+WDL+ K SV+
Sbjct: 695 GE-LVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLWDLNQKECRNTMFGHTNSVN 753
Query: 231 RIKWRPQRKFHLASCSLVVDSSVNVWD 257
++ P K LASCS D ++ +WD
Sbjct: 754 HCRFSPDDKL-LASCS--ADGTLKLWD 777
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/154 (22%), Positives = 73/154 (47%), Gaps = 12/154 (7%)
Query: 63 EENHIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTM 122
+E + + + + + VWN Q+ + H+ TV F ++++ L+S S DGT+
Sbjct: 1020 DEKTLISSSDDAEIQVWNW-QLDKCI---FLRGHQETVK--DFRLLKNSRLLSWSFDGTV 1073
Query: 123 RLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQW--DVRRPEKCFYQF 180
++++I K F + +V + + H F+S S + T + W D+ P ++
Sbjct: 1074 KVWNIITGNKEKDFVCHQGTVLSCDIS-HDATKFSSTSADKTAKIWSFDLLLP---LHEL 1129
Query: 181 TAHSGPIFACDWHPEHAWLATASRDKTIKVWDLS 214
H+G + + + LAT + I++W++S
Sbjct: 1130 RGHNGCVRCSAFSVDSTLLATGDDNGEIRIWNVS 1163
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/105 (22%), Positives = 50/105 (47%), Gaps = 2/105 (1%)
Query: 109 ESNWLISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAF-ASVSENGTIQQ 167
+ ++ + S D +++++ E + ++E V F S + A+ S + ++
Sbjct: 674 DDRFIATCSVDKKVKIWNSMTGELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKL 733
Query: 168 WDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWD 212
WD+ + E C H+ + C + P+ LA+ S D T+K+WD
Sbjct: 734 WDLNQKE-CRNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLWD 777
Score = 35.0 bits (79), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 29/135 (21%), Positives = 56/135 (41%), Gaps = 3/135 (2%)
Query: 157 ASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIK 216
AS + T+Q + EK + AH + C + + ++AT S DK +K+W+ S+
Sbjct: 637 ASCGADKTLQVFKAETGEK-LLEIKAHEDEVLCCAFSTDDRFIATCSVDKKVKIWN-SMT 694
Query: 217 PSLEYSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTEHKDVVS 276
L ++ + + HL + D + +WD+ + F H + V+
Sbjct: 695 GELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLWDLNQKECRNTMFG-HTNSVN 753
Query: 277 GLAWRGDPQLFIASS 291
+ D +L + S
Sbjct: 754 HCRFSPDDKLLASCS 768
Score = 34.7 bits (78), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 44/205 (21%), Positives = 86/205 (41%), Gaps = 18/205 (8%)
Query: 67 IATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFD 126
+ATG+++ + +W+L Q + + +F H +VN F + L S S DGT++L+D
Sbjct: 722 LATGSSDCFLKLWDLNQ--KECRNTMFG-HTNSVNHCRFS-PDDKLLASCSADGTLKLWD 777
Query: 127 I-----RCQESTKIFHSNTESVR-DVEF-----NPHSPYAFASVSENGTIQQWDVRRPEK 175
R + K F N E + D+E + + A V+ I +D+
Sbjct: 778 ATSANERKSINVKQFFLNLEDPQEDMEVIVKCCSWSADGARIMVAAKNKIFLFDIHTSGL 837
Query: 176 CFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSLEYSINTIASVSRIKWR 235
T H I CD+ P++ A +++W+ + + ++ V + +
Sbjct: 838 LGEIHTGHHSTIQYCDFSPQNHLAVVALSQYCVELWNTDSRSKVADCRGHLSWVHGVMFS 897
Query: 236 PQRKFHLASCSLVVDSSVNVWDIRR 260
P L S D ++ +W+ ++
Sbjct: 898 PDGSSFLTSSD---DQTIRLWETKK 919
Score = 27.7 bits (60), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 21/94 (22%), Positives = 43/94 (45%), Gaps = 8/94 (8%)
Query: 62 IEENHIATGATNGAVVVWN-----LGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISG 116
++ +ATG NG + +WN L + E H V + F + LIS
Sbjct: 1143 VDSTLLATGDDNGEIRIWNVSNGELLHLCAPLSEEGAATHGGWVTDLCFS-PDGKMLISA 1201
Query: 117 SQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNP 150
G ++ +++ ES++ F++N +++ + +P
Sbjct: 1202 G--GYIKWWNVVTGESSQTFYTNGTNLKKIHVSP 1233
>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 416
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 49/215 (22%), Positives = 92/215 (42%), Gaps = 23/215 (10%)
Query: 105 FHYVESNWLISGSQD-GTMRLFDIR----CQESTKIFHSNTESVRDVEFNPHSPYAFASV 159
+ +N +I+G+ D G++ L+ S F +++ SV+ V+FN AS
Sbjct: 73 LDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASG 132
Query: 160 SENGTIQQWDVRRPEKCFYQFTAHS--------GPIFACDWHPEHAWL-ATASRDKTIKV 210
NG I WD+ + + +T + + + W+ A + A+A +
Sbjct: 133 GNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASI 192
Query: 211 WDLSIKPS---LEYSINTIA---SVSRIKWRPQRKFHLASCSLVV-DSSVNVWDIRRPYI 263
WDL K L Y+ +S ++W P+ +A+ + D S+ +WD+R
Sbjct: 193 WDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANT 252
Query: 264 PLASFTE-HKDVVSGLAW-RGDPQLFIASSRVSII 296
PL + + H+ + L W D L ++S R + +
Sbjct: 253 PLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTV 287
Score = 32.7 bits (73), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 37/181 (20%), Positives = 82/181 (45%), Gaps = 25/181 (13%)
Query: 53 SCNDVAWSCIEENHIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKV------SFH 106
S V ++ ++N +A+G NG + +W++ + + S ++++ V +++
Sbjct: 115 SVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWN 174
Query: 107 YVESNWLISGSQDGTMRLFDIRCQESTKIFHSNTESVRD--------VEFNPHSP--YAF 156
++ S ++D++ ++ ++ H + S VE++P + A
Sbjct: 175 QSLAHVFASAGSSNFASIWDLKAKK--EVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVAT 232
Query: 157 ASVSENG-TIQQWDVRR---PEKCFYQFTAHSGPIFACDW-HPEHAWLATASRDKTIKVW 211
A+ S+N +I WD+R P + Q H I + DW H + L ++ RD T+ +W
Sbjct: 233 ATGSDNDPSILIWDLRNANTPLQTLNQ--GHQKGILSLDWCHQDEHLLLSSGRDNTVLLW 290
Query: 212 D 212
+
Sbjct: 291 N 291
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/100 (21%), Positives = 50/100 (50%), Gaps = 2/100 (2%)
Query: 68 ATGATNG-AVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFD 126
ATG+ N ++++W+L + + + + + H++ + + + + + + L+S +D T+ L++
Sbjct: 233 ATGSDNDPSILIWDL-RNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWN 291
Query: 127 IRCQESTKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQ 166
E F + +F P +P FA S + I+
Sbjct: 292 PESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIE 331
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 47.8 bits (112), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 65/233 (27%), Positives = 100/233 (42%), Gaps = 35/233 (15%)
Query: 57 VAWSCIEENHIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISG 116
VAW+ N +AT + + +V VW + + + V N H + V V +H + L S
Sbjct: 111 VAWA-PSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQEL-LASA 168
Query: 117 SQDGTMRLFDIRCQESTKIFHSNTE----SVRDVEFNPHSPYAFASVSENGTIQQWDVRR 172
S D T++L+ R +E + + E +V + F+P S AS S++ T++ W
Sbjct: 169 SYDDTVKLY--REEEDDWVCCATLEGHESTVWSLAFDP-SGQRLASCSDDRTVRIWRQYL 225
Query: 173 PE--------------KCFYQFTA-HSGPIFACDWHPEHAWLATASRDKTIKVW--DLSI 215
P KC + HS I+ W LATA D I+V+ D +
Sbjct: 226 PGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNS 285
Query: 216 KP-----SLEYSINTIAS--VSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRP 261
P SL ++ S V+ + W P+ LASCS D V W +RP
Sbjct: 286 DPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCS--DDGEVAFWKYQRP 336
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 79/170 (46%), Gaps = 17/170 (10%)
Query: 142 SVRDVEFNPHSPYAFASVSENGTIQQWDVRRPE-KCFYQFTAHSGPIFACDWHPEHAWLA 200
+VR V ++P Y AS S + T W + + +C H + + W P LA
Sbjct: 63 TVRKVAWSPCGNY-LASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLA 121
Query: 201 TASRDKTIKVWDLSIKPSLEYSINTIAS----VSRIKWRPQRKFHLASCSLVVDSSVNVW 256
T SRDK++ VW++ + E ++ + S V + W P ++ LAS S D +V ++
Sbjct: 122 TCSRDKSVWVWEVDEEDEYE-CVSVLNSHTQDVKHVVWHPSQEL-LASASY--DDTVKLY 177
Query: 257 -DIRRPYIPLASFTEHKDVVSGLAWRGDPQLFIASSRVSIIPRAKNIKIF 305
+ ++ A+ H+ V LA+ DP + R++ + ++I+
Sbjct: 178 REEEDDWVCCATLEGHESTVWSLAF--DP----SGQRLASCSDDRTVRIW 221
Score = 37.4 bits (85), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 37/162 (22%), Positives = 77/162 (47%), Gaps = 14/162 (8%)
Query: 57 VAWSCIEENHIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISG 116
VAWS N++A+ + + +W Q + H+ V V++ N L +
Sbjct: 67 VAWSPCG-NYLASASFDATTCIWKKNQ-DDFECVTTLEGHENEVKSVAW-APSGNLLATC 123
Query: 117 SQDGTMRLFDIRCQ---ESTKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRP 173
S+D ++ ++++ + E + +S+T+ V+ V ++P S AS S + T++ + R
Sbjct: 124 SRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHP-SQELLASASYDDTVK---LYRE 179
Query: 174 EK----CFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVW 211
E+ C H +++ + P LA+ S D+T+++W
Sbjct: 180 EEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIW 221
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 41/92 (44%), Gaps = 18/92 (19%)
Query: 96 HKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQE-------------STKIFHSNTES 142
H RT+ +++ + L + D +R+F QE + + ++++
Sbjct: 251 HSRTIYDIAWCQLTGA-LATACGDDAIRVF----QEDPNSDPQQPTFSLTAHLHQAHSQD 305
Query: 143 VRDVEFNPHSPYAFASVSENGTIQQWDVRRPE 174
V V +NP P AS S++G + W +RPE
Sbjct: 306 VNCVAWNPKEPGLLASCSDDGEVAFWKYQRPE 337
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 45/105 (42%), Gaps = 7/105 (6%)
Query: 192 WHPEHAWLATASRDKTIKVWDLSIKPSLEYSINTIA---SVSRIKWRPQRKFHLASCSLV 248
W+P LA+ D+ I++W + S+ + +V ++ W P + LAS S
Sbjct: 24 WNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNY-LASASF- 81
Query: 249 VDSSVNVWDIRRPYIPLASFTE-HKDVVSGLAWRGDPQLFIASSR 292
D++ +W + + E H++ V +AW L SR
Sbjct: 82 -DATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSR 125
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 79/163 (48%), Gaps = 26/163 (15%)
Query: 67 IATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVE-------SNWLISGSQD 119
I + + + ++++W L +K ++ + +R + S H+VE + +SGS D
Sbjct: 398 IVSASRDKSIILWKL-----TKDDKAYGVAQRRLTGHS-HFVEDVVLSSDGQFALSGSWD 451
Query: 120 GTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQ 179
G +RL+D+ ST+ F +T+ V V F+ + S S + TI+ W+ +C +
Sbjct: 452 GELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDN-RQIVSASRDRTIKLWNTLG--EC--K 506
Query: 180 FTAHSGPIFACDW--------HPEHAWLATASRDKTIKVWDLS 214
+T G DW + + +AS DKT+KVW+LS
Sbjct: 507 YTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLS 549
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/200 (22%), Positives = 91/200 (45%), Gaps = 16/200 (8%)
Query: 69 TGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIR 128
+G+ +G + +W+L + R F H + V V+F +++ ++S S+D T++L++
Sbjct: 447 SGSWDGELRLWDL---AAGVSTRRFVGHTKDVLSVAFS-LDNRQIVSASRDRTIKLWNT- 501
Query: 129 CQESTKIFHSNTESVRD----VEFNPHSPY-AFASVSENGTIQQWDVRRPEKCFYQFTAH 183
E E RD V F+P++ S S + T++ W++ K H
Sbjct: 502 LGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNC-KLRSTLAGH 560
Query: 184 SGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSLEYSINTIASVSRIKWRPQRKFHLA 243
+G + P+ + A+ +D + +WDL+ L YS+ + + + + P R + A
Sbjct: 561 TGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKL-YSLEANSVIHALCFSPNRYWLCA 619
Query: 244 SCSLVVDSSVNVWDIRRPYI 263
+ + + +WD+ I
Sbjct: 620 A----TEHGIKIWDLESKSI 635
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 52/108 (48%), Gaps = 4/108 (3%)
Query: 113 LISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRR 172
++S S D T++++++ + +T V V +P AS ++G + WD+
Sbjct: 534 IVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLC-ASGGKDGVVLLWDLAE 592
Query: 173 PEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSLE 220
+K Y A+S I A + P WL A+ + IK+WDL K +E
Sbjct: 593 GKK-LYSLEANS-VIHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVE 637
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 53/234 (22%), Positives = 106/234 (45%), Gaps = 24/234 (10%)
Query: 69 TGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIR 128
+G+ +G + +W+L + R F H + V V+F ++ ++SGS+D T++L++
Sbjct: 103 SGSWDGTLRLWDL---TTGTTTRRFVGHTKDVLSVAFSS-DNRQIVSGSRDKTIKLWNTL 158
Query: 129 --CQESTKIFHSNTESVRDVEFNPHSPYAF-ASVSENGTIQQWDVRRPEKCFYQFTAHSG 185
C+ + + S++E V V F+P+S S + ++ W++ K H+G
Sbjct: 159 GVCKYTVQ-DESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANC-KLKTNHIGHTG 216
Query: 186 PIFACDWHPEHAWLATASRDKTIKVWDLSIKPSLEYSINTIASVSRIKWRPQRKFHLASC 245
+ P+ + A+ +D +WDL+ L Y+++ ++ + + P R + A+
Sbjct: 217 YLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHL-YTLDGGDIINALCFSPNRYWLCAA- 274
Query: 246 SLVVDSSVNVWD---------IRRPYIPLASFTEHKDVVSGLAWRGDPQLFIAS 290
S+ +WD +++ I +S E S LAW D Q A
Sbjct: 275 ---TGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTS-LAWSADGQTLFAG 324
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 73/154 (47%), Gaps = 6/154 (3%)
Query: 65 NHIATGATNGAVVVWNL--GQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTM 122
+ I + + + +++W L + + +R H V+ V + + +SGS DGT+
Sbjct: 52 DMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISS-DGQFALSGSWDGTL 110
Query: 123 RLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFTA 182
RL+D+ +T+ F +T+ V V F+ + S S + TI+ W+ K Q +
Sbjct: 111 RLWDLTTGTTTRRFVGHTKDVLSVAFSSDN-RQIVSGSRDKTIKLWNTLGVCKYTVQDES 169
Query: 183 HSGPIFACDWHPEHA--WLATASRDKTIKVWDLS 214
HS + + P + + + DK +KVW+L+
Sbjct: 170 HSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLA 203
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 53/234 (22%), Positives = 106/234 (45%), Gaps = 24/234 (10%)
Query: 69 TGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIR 128
+G+ +G + +W+L + R F H + V V+F ++ ++SGS+D T++L++
Sbjct: 80 SGSWDGTLRLWDL---TTGTTTRRFVGHTKDVLSVAFSS-DNRQIVSGSRDKTIKLWNTL 135
Query: 129 --CQESTKIFHSNTESVRDVEFNPHSPYAF-ASVSENGTIQQWDVRRPEKCFYQFTAHSG 185
C+ + + S++E V V F+P+S S + ++ W++ K H+G
Sbjct: 136 GVCKYTVQ-DESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANC-KLKTNHIGHTG 193
Query: 186 PIFACDWHPEHAWLATASRDKTIKVWDLSIKPSLEYSINTIASVSRIKWRPQRKFHLASC 245
+ P+ + A+ +D +WDL+ L Y+++ ++ + + P R + A+
Sbjct: 194 YLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHL-YTLDGGDIINALCFSPNRYWLCAA- 251
Query: 246 SLVVDSSVNVWD---------IRRPYIPLASFTEHKDVVSGLAWRGDPQLFIAS 290
S+ +WD +++ I +S E S LAW D Q A
Sbjct: 252 ---TGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTS-LAWSADGQTLFAG 301
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 73/154 (47%), Gaps = 6/154 (3%)
Query: 65 NHIATGATNGAVVVWNL--GQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTM 122
+ I + + + +++W L + + +R H V+ V + + +SGS DGT+
Sbjct: 29 DMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISS-DGQFALSGSWDGTL 87
Query: 123 RLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFTA 182
RL+D+ +T+ F +T+ V V F+ + S S + TI+ W+ K Q +
Sbjct: 88 RLWDLTTGTTTRRFVGHTKDVLSVAFSSDN-RQIVSGSRDKTIKLWNTLGVCKYTVQDES 146
Query: 183 HSGPIFACDWHPEHA--WLATASRDKTIKVWDLS 214
HS + + P + + + DK +KVW+L+
Sbjct: 147 HSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLA 180
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 51/207 (24%), Positives = 89/207 (42%), Gaps = 11/207 (5%)
Query: 56 DVAWSCIEENHIATGATNGAVVVWNLGQISRSKQERVFN-DHKRTVNKVSFHYVESNWLI 114
D+ W + E I + +GAV +W L + + +H V+ VS +
Sbjct: 87 DLTW--VGERGILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSV-LSSGTQAV 143
Query: 115 SGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPE 174
SGS+D ++++D+ Q + ++ V V +PH F S SE+ I WD R P+
Sbjct: 144 SGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPK 203
Query: 175 KCFYQFTAHSGPI-FACDWHPEHAWLAT-ASRDKTIKVWDLSIKPSLEYSINTIASVSRI 232
+ G + + WHP+ + + + T+ + D + S V+ +
Sbjct: 204 PASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGL 263
Query: 233 KWRPQRKFHLAS----CSL-VVDSSVN 254
+ P LAS CSL V+DSS++
Sbjct: 264 VFSPHSVPFLASLSEDCSLAVLDSSLS 290
>pdb|3EI4|B Chain B, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|D Chain D, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|F Chain F, Structure Of The Hsddb1-Hsddb2 Complex
Length = 436
Score = 44.3 bits (103), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 41/179 (22%), Positives = 76/179 (42%), Gaps = 22/179 (12%)
Query: 57 VAWSCIEENHIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISG 116
+AW + +A G+ G +++WN G + + ++ + F+ + +N +
Sbjct: 126 LAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGG-SITGLKFNPLNTNQFYAS 184
Query: 117 SQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASVSEN-GTI--------QQ 167
S +GT RL D + S+T ++ + + +N G + +
Sbjct: 185 SMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKEL 244
Query: 168 WDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSI---KPSLEYSI 223
W++R +K + CDW +LATAS D+T+K+WDL K S YS+
Sbjct: 245 WNLRMHKKKVTHVALNP----CCDW-----FLATASVDQTVKIWDLRQVRGKASFLYSL 294
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 47/215 (21%), Positives = 80/215 (37%), Gaps = 43/215 (20%)
Query: 24 NVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVVWNLGQ 83
N+ ++F DT IN+ F DV+ S + TG G V++ N+
Sbjct: 198 NILRVFASSDT-------------INIWFCSLDVSAS---SRMVVTGDNVGNVILLNMD- 240
Query: 84 ISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIF---HSNT 140
K+ HK+ V V+ + +L + S D T++++D+R F +
Sbjct: 241 ---GKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHR 297
Query: 141 ESVRDVEFNPHSPYAFASVSENG----TIQQWD-----VRRPEKCFYQFTAHSGPIFACD 191
V F+P + ++ + QWD + P + F T PI A
Sbjct: 298 HPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLT----PIKAA- 352
Query: 192 WHPEHAWLATASRDKTIKVWDLSIKPSLEYSINTI 226
WHP + + + D + K Y + TI
Sbjct: 353 WHPRYNLIVVG------RYPDPNFKSCTPYELRTI 381
>pdb|4E54|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 435
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/166 (22%), Positives = 71/166 (42%), Gaps = 19/166 (11%)
Query: 57 VAWSCIEENHIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISG 116
+AW + +A G+ G +++WN G + + ++ + F+ + +N +
Sbjct: 125 LAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGG-SITGLKFNPLNTNQFYAS 183
Query: 117 SQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASVSEN-GTI--------QQ 167
S +GT RL D + S+T ++ + + +N G + +
Sbjct: 184 SMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKEL 243
Query: 168 WDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDL 213
W++R +K + CDW +LATAS D+T+K+WDL
Sbjct: 244 WNLRMHKKKVTHVALNP----CCDW-----FLATASVDQTVKIWDL 280
Score = 28.5 bits (62), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 47/215 (21%), Positives = 80/215 (37%), Gaps = 43/215 (20%)
Query: 24 NVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVVWNLGQ 83
N+ ++F DT IN+ F DV+ S + TG G V++ N+
Sbjct: 197 NILRVFASSDT-------------INIWFCSLDVSAS---SRMVVTGDNVGNVILLNMD- 239
Query: 84 ISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIF---HSNT 140
K+ HK+ V V+ + +L + S D T++++D+R F +
Sbjct: 240 ---GKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHR 296
Query: 141 ESVRDVEFNPHSPYAFASVSENG----TIQQWD-----VRRPEKCFYQFTAHSGPIFACD 191
V F+P + ++ + QWD + P + F T PI A
Sbjct: 297 HPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLT----PIKAA- 351
Query: 192 WHPEHAWLATASRDKTIKVWDLSIKPSLEYSINTI 226
WHP + + + D + K Y + TI
Sbjct: 352 WHPRYNLIVVG------RYPDPNFKSCTPYELRTI 380
>pdb|4E5Z|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 436
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/166 (22%), Positives = 71/166 (42%), Gaps = 19/166 (11%)
Query: 57 VAWSCIEENHIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISG 116
+AW + +A G+ G +++WN G + + ++ + F+ + +N +
Sbjct: 125 LAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGG-SITGLKFNPLNTNQFYAS 183
Query: 117 SQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASVSEN-GTI--------QQ 167
S +GT RL D + S+T ++ + + +N G + +
Sbjct: 184 SMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKEL 243
Query: 168 WDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDL 213
W++R +K + CDW +LATAS D+T+K+WDL
Sbjct: 244 WNLRMHKKKVTHVALNP----CCDW-----FLATASVDQTVKIWDL 280
Score = 28.5 bits (62), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 47/215 (21%), Positives = 80/215 (37%), Gaps = 43/215 (20%)
Query: 24 NVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVVWNLGQ 83
N+ ++F DT IN+ F DV+ S + TG G V++ N+
Sbjct: 197 NILRVFASSDT-------------INIWFCSLDVSAS---SRMVVTGDNVGNVILLNMD- 239
Query: 84 ISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIF---HSNT 140
K+ HK+ V V+ + +L + S D T++++D+R F +
Sbjct: 240 ---GKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHR 296
Query: 141 ESVRDVEFNPHSPYAFASVSENG----TIQQWD-----VRRPEKCFYQFTAHSGPIFACD 191
V F+P + ++ + QWD + P + F T PI A
Sbjct: 297 HPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLT----PIKAA- 351
Query: 192 WHPEHAWLATASRDKTIKVWDLSIKPSLEYSINTI 226
WHP + + + D + K Y + TI
Sbjct: 352 WHPRYNLIVVG------RYPDPNFKSCTPYELRTI 380
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 64/153 (41%), Gaps = 9/153 (5%)
Query: 67 IATGATNGAVVVWNLGQISR-SKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLF 125
I + GA +V LG+ R K + H V +++ N + SGS+D T+ ++
Sbjct: 50 IXEASGGGAFLVLPLGKTGRVDKNVPLVXGHTAPVLDIAWXPHNDNVIASGSEDCTVMVW 109
Query: 126 DIR-------CQESTKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCF- 177
+I +E +T+ V V ++P + S + I WDV
Sbjct: 110 EIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGXDNVILVWDVGTGAAVLT 169
Query: 178 YQFTAHSGPIFACDWHPEHAWLATASRDKTIKV 210
H I++ DW + A + T+ RDK ++V
Sbjct: 170 LGPDVHPDTIYSVDWSRDGALICTSCRDKRVRV 202
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 45/93 (48%), Gaps = 8/93 (8%)
Query: 43 RVGKNINL----NFSCNDVAWSCIEENHIATGATNGAVVVWNL--GQISRSKQERV--FN 94
RV KN+ L D+AW +N IA+G+ + V+VW + G + +E V
Sbjct: 69 RVDKNVPLVXGHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLE 128
Query: 95 DHKRTVNKVSFHYVESNWLISGSQDGTMRLFDI 127
H + V V++H N L+S D + ++D+
Sbjct: 129 GHTKRVGIVAWHPTAQNVLLSAGXDNVILVWDV 161
Score = 36.6 bits (83), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 40/97 (41%), Gaps = 13/97 (13%)
Query: 128 RCQESTKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDV---------RRPEKCFY 178
R ++ + +T V D+ + PH+ AS SE+ T+ W++ R P
Sbjct: 69 RVDKNVPLVXGHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREP---VI 125
Query: 179 QFTAHSGPIFACDWHP-EHAWLATASRDKTIKVWDLS 214
H+ + WHP L +A D I VWD+
Sbjct: 126 TLEGHTKRVGIVAWHPTAQNVLLSAGXDNVILVWDVG 162
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 64/153 (41%), Gaps = 9/153 (5%)
Query: 67 IATGATNGAVVVWNLGQISR-SKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLF 125
I + GA +V LG+ R K + H V +++ N + SGS+D T+ ++
Sbjct: 50 ICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVW 109
Query: 126 DIR-------CQESTKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCF- 177
+I +E +T+ V V ++P + S + I WDV
Sbjct: 110 EIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLT 169
Query: 178 YQFTAHSGPIFACDWHPEHAWLATASRDKTIKV 210
H I++ DW + A + T+ RDK ++V
Sbjct: 170 LGPDVHPDTIYSVDWSRDGALICTSCRDKRVRV 202
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 45/93 (48%), Gaps = 8/93 (8%)
Query: 43 RVGKNINL----NFSCNDVAWSCIEENHIATGATNGAVVVWNL--GQISRSKQERV--FN 94
RV KN+ L D+AW +N IA+G+ + V+VW + G + +E V
Sbjct: 69 RVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLE 128
Query: 95 DHKRTVNKVSFHYVESNWLISGSQDGTMRLFDI 127
H + V V++H N L+S D + ++D+
Sbjct: 129 GHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDV 161
Score = 34.7 bits (78), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 40/97 (41%), Gaps = 13/97 (13%)
Query: 128 RCQESTKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDV---------RRPEKCFY 178
R ++ + +T V D+ + PH+ AS SE+ T+ W++ R P
Sbjct: 69 RVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREP---VI 125
Query: 179 QFTAHSGPIFACDWHP-EHAWLATASRDKTIKVWDLS 214
H+ + WHP L +A D I VWD+
Sbjct: 126 TLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVG 162
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 50/231 (21%), Positives = 89/231 (38%), Gaps = 66/231 (28%)
Query: 67 IATGATNGAVVVWNLGQISRSKQ----ERVFNDHKRTVNKVSFHYVESNWLISGSQDGTM 122
+ +G+ + V++W L + ++ + H V+ ++ E+ + IS S D T+
Sbjct: 42 LISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQ-ENCFAISSSWDKTL 100
Query: 123 RLFDIRCQESTKIFHSNTESVRDVEFNP-------------------------------- 150
RL+D+R + K F + V V F+P
Sbjct: 101 RLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKEN 160
Query: 151 HS-------------------PYA--FASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFA 189
HS P+A FASV +G ++ W+ + Y F AH +
Sbjct: 161 HSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNF--QIRYTFKAHESNVNH 218
Query: 190 CDWHPEHAWLATASRDKTIKVWDL--SIKPSLEY----SINTIASVSRIKW 234
P ++AT +DK + +WD+ P E+ +IN IA +++W
Sbjct: 219 LSISPNGKYIATGGKDKKLLIWDILNLTYPQREFDAGSTINQIAFNPKLQW 269
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 62/275 (22%), Positives = 109/275 (39%), Gaps = 35/275 (12%)
Query: 20 QPSRNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVVW 79
Q + +K+ +I + + GK N +C +AWS + N I TG NG + +W
Sbjct: 80 QEGKKYWKLTIIAELRHPFALSASSGKTTN-QVTC--LAWSH-DGNSIVTGVENGELRLW 135
Query: 80 NLGQISRSKQERVFNDHKRTV-----NKVSFHYVESN-------W-LISGSQDGTMRLFD 126
N V N H+ + NK H + + W +ISG+ M+ F+
Sbjct: 136 N----KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGT---VMQHFE 188
Query: 127 IRCQESTKIF---HSNTESVR-DVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFTA 182
++ + I HS S+ DVE+ + + Q + P +
Sbjct: 189 LKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTG---KLIG 245
Query: 183 HSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSLEYSINTIASVSRIKWRPQRKFHL 242
H GPI +++ + L +AS D T+++W S S+ W K +
Sbjct: 246 HHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDDK--V 303
Query: 243 ASCSLVVDSSVNVWDIRRPYIPLASFTEHKDVVSG 277
SCS+ D SV +W +++ + S + + +G
Sbjct: 304 ISCSM--DGSVRLWSLKQNTLLALSIVDGVPIFAG 336
>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic
Crystal Form
Length = 615
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 40/88 (45%), Gaps = 8/88 (9%)
Query: 132 STKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFTAHS-----GP 186
S + H VRDVEF+P S +V + I +D + E F ++ G
Sbjct: 198 SDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGE--FLKYIEDDQEPVQGG 255
Query: 187 IFACDWHPEHAWLATASRDKTIKVWDLS 214
IFA W + AT D TI+VWD++
Sbjct: 256 IFALSWLDSQKF-ATVGADATIRVWDVT 282
Score = 34.7 bits (78), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 36/157 (22%), Positives = 65/157 (41%), Gaps = 17/157 (10%)
Query: 154 YAFASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDL 213
Y + E TIQ + + E F T P ++A I ++DL
Sbjct: 458 YVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDL 517
Query: 214 ---SIKPSLEYSINTIASVSRIKWRPQRKFH---------LASCSLVVDSSVNVWDIRRP 261
+K S ++ T + ++ I W+P K +A+ SL D+++ ++ ++RP
Sbjct: 518 QSREVKTS-RWAFRT-SKINAISWKPAEKGANEEEIEEDLVATGSL--DTNIFIYSVKRP 573
Query: 262 YIPLASFTEHKDVVSGLAWRGDPQLFIASSRVSIIPR 298
+ + HKD V+ L W P ++S + I R
Sbjct: 574 MKIIKALNAHKDGVNNLLWE-TPSTLVSSGADACIKR 609
Score = 31.2 bits (69), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 24/111 (21%), Positives = 47/111 (42%), Gaps = 6/111 (5%)
Query: 58 AWSCIEENHIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGS 117
A S ++ AT + + VW++ S+ Q+ + + +V + +IS S
Sbjct: 258 ALSWLDSQKFATVGADATIRVWDV-TTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLS 316
Query: 118 QDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQW 168
DGT+ +++ E K + + + + NP S S +G I +W
Sbjct: 317 LDGTLNFYELGHDEVLKTISGHNKGITALTVNP-----LISGSYDGRIMEW 362
>pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
pdb|1PGU|B Chain B, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
Length = 615
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 46/106 (43%), Gaps = 11/106 (10%)
Query: 117 SQDGTMRLFD---IRCQESTKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRP 173
DG++ + + S + H VRDVEF+P S +V + I +D +
Sbjct: 180 GDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSG 239
Query: 174 EKCFYQFTAHS-----GPIFACDWHPEHAWLATASRDKTIKVWDLS 214
E F ++ G IFA W + AT D TI+VWD++
Sbjct: 240 E--FLKYIEDDQEPVQGGIFALSWLDSQKF-ATVGADATIRVWDVT 282
Score = 35.0 bits (79), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 36/157 (22%), Positives = 65/157 (41%), Gaps = 17/157 (10%)
Query: 154 YAFASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDL 213
Y + E TIQ + + E F T P ++A I ++DL
Sbjct: 458 YVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVXGKILLYDL 517
Query: 214 ---SIKPSLEYSINTIASVSRIKWRPQRKFH---------LASCSLVVDSSVNVWDIRRP 261
+K S ++ T + ++ I W+P K +A+ SL D+++ ++ ++RP
Sbjct: 518 QSREVKTS-RWAFRT-SKINAISWKPAEKGANEEEIEEDLVATGSL--DTNIFIYSVKRP 573
Query: 262 YIPLASFTEHKDVVSGLAWRGDPQLFIASSRVSIIPR 298
+ + HKD V+ L W P ++S + I R
Sbjct: 574 XKIIKALNAHKDGVNNLLWE-TPSTLVSSGADACIKR 609
Score = 31.2 bits (69), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 24/111 (21%), Positives = 47/111 (42%), Gaps = 6/111 (5%)
Query: 58 AWSCIEENHIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGS 117
A S ++ AT + + VW++ S+ Q+ + + +V + +IS S
Sbjct: 258 ALSWLDSQKFATVGADATIRVWDV-TTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLS 316
Query: 118 QDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQW 168
DGT+ +++ E K + + + + NP S S +G I +W
Sbjct: 317 LDGTLNFYELGHDEVLKTISGHNKGITALTVNP-----LISGSYDGRIXEW 362
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/110 (22%), Positives = 53/110 (48%), Gaps = 5/110 (4%)
Query: 63 EENHIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTM 122
+ ++ATG G V N+ + K+E + + + +++ + +L SG+ DG +
Sbjct: 133 DSQYLATGTHVGKV---NIFGVESGKKEYSLDTRGKFILSIAYS-PDGKYLASGAIDGII 188
Query: 123 RLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRR 172
+FDI + + +R + F+P S + S++G I+ +DV+
Sbjct: 189 NIFDIATGKLLHTLEGHAMPIRSLTFSPDSQL-LVTASDDGYIKIYDVQH 237
Score = 32.7 bits (73), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 27/146 (18%), Positives = 60/146 (41%), Gaps = 5/146 (3%)
Query: 115 SGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPE 174
S S D +RL+D+ + K + + F+P S Y A+ + G + + V +
Sbjct: 97 SSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQY-LATGTHVGKVNIFGVESGK 155
Query: 175 KCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSLEYSINTIASVSRIKW 234
K Y I + + P+ +LA+ + D I ++D++ L + + +
Sbjct: 156 KE-YSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTF 214
Query: 235 RPQRKFHLASCSLVVDSSVNVWDIRR 260
P + + + D + ++D++
Sbjct: 215 SPDSQLLVTASD---DGYIKIYDVQH 237
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/198 (19%), Positives = 93/198 (46%), Gaps = 14/198 (7%)
Query: 78 VWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQ-ESTKIF 136
+WNL + + F H + V V+F ++ ++SG +D +R+++++ + T
Sbjct: 93 LWNL---QNGQCQYKFLGHTKDVLSVAFS-PDNRQIVSGGRDNALRVWNVKGECMHTLSR 148
Query: 137 HSNTESVRDVEFNP--HSPYAFASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHP 194
++T+ V V F+P +P + +N ++ WD+ + H+ + + P
Sbjct: 149 GAHTDWVSCVRFSPSLDAPVIVSGGWDN-LVKVWDLAT-GRLVTDLKGHTNYVTSVTVSP 206
Query: 195 EHAWLATASRDKTIKVWDLSIKPSLEYSINTIASVSRIKWRPQRKFHLASCSLVVDSSVN 254
+ + A++ +D ++WDL+ +L + A +++I + P R + A+ + +
Sbjct: 207 DGSLCASSDKDGVARLWDLTKGEALS-EMAAGAPINQICFSPNRYWMCAA----TEKGIR 261
Query: 255 VWDIRRPYIPLASFTEHK 272
++D+ I + EH+
Sbjct: 262 IFDLENKDIIVELAPEHQ 279
Score = 36.2 bits (82), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 30/158 (18%), Positives = 74/158 (46%), Gaps = 13/158 (8%)
Query: 143 VRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATA 202
V DV + + +A S S + +++ W+++ + C Y+F H+ + + + P++ + +
Sbjct: 70 VSDVALSNNGNFAV-SASWDHSLRLWNLQNGQ-CQYKFLGHTKDVLSVAFSPDNRQIVSG 127
Query: 203 SRDKTIKVWDLSIKPSLEYSINTIASVSRIKWRPQRKFHLASCSLVV-----DSSVNVWD 257
RD ++VW++ + ++T++ + W +F + + V+ D+ V VWD
Sbjct: 128 GRDNALRVWNVKGE-----CMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWD 182
Query: 258 IRRPYIPLASFTEHKDVVSGLAWRGDPQLFIASSRVSI 295
+ + + H + V+ + D L +S + +
Sbjct: 183 LATGRL-VTDLKGHTNYVTSVTVSPDGSLCASSDKDGV 219
Score = 35.8 bits (81), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 34/155 (21%), Positives = 72/155 (46%), Gaps = 11/155 (7%)
Query: 83 QISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSNTES 142
+ S +R H V+ V+ N+ +S S D ++RL++++ + F +T+
Sbjct: 53 ECSYGLPDRRLEGHSAFVSDVALSN-NGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKD 111
Query: 143 VRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFT--AHSGPIFACDWHP--EHAW 198
V V F+P + + +N ++ W+V+ +C + + AH+ + + P +
Sbjct: 112 VLSVAFSPDNRQIVSGGRDN-ALRVWNVK--GECMHTLSRGAHTDWVSCVRFSPSLDAPV 168
Query: 199 LATASRDKTIKVWDLS---IKPSLEYSINTIASVS 230
+ + D +KVWDL+ + L+ N + SV+
Sbjct: 169 IVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSVT 203
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 40/79 (50%), Gaps = 6/79 (7%)
Query: 183 HSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSLEYSINTIASVSRIKWRPQRKFHL 242
H+GP+ W + + + TAS DKT K+WDLS +++ + + A V I W +
Sbjct: 85 HTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIAQHD-APVKTIHWIKAPNY-- 141
Query: 243 ASCSLVV--DSSVNVWDIR 259
SC + D ++ WD R
Sbjct: 142 -SCVMTGSWDKTLKFWDTR 159
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 49/121 (40%), Gaps = 13/121 (10%)
Query: 181 TAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSLEYSINTIA-------SVSRIK 233
TAH I + W P + LA S D T+ +W + ++ +A V +
Sbjct: 55 TAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVA 114
Query: 234 WRPQRKFHLASCSLVVDSSVNVWDIR---RPYIPLASFTEHKDVVSGLAWRGDPQLFIAS 290
W ++LA+CS D SV +W+ Y ++ EH V + W L +S
Sbjct: 115 W-SNDGYYLATCSR--DKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASS 171
Query: 291 S 291
S
Sbjct: 172 S 172
Score = 36.2 bits (82), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 48/208 (23%), Positives = 88/208 (42%), Gaps = 29/208 (13%)
Query: 96 HKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNP----- 150
HK+ + V++ ++ L +GS D T+ ++ + + + + F + ++ + N
Sbjct: 57 HKKAIRSVAWR-PHTSLLAAGSFDSTVSIW-AKEESADRTFEMDLLAIIEGHENEVKGVA 114
Query: 151 --HSPYAFASVSENGTIQQWDVRRPEK---CFYQFTAHSGPIFACDWHPEHAWLATASRD 205
+ Y A+ S + ++ W+ + C HS + WHP A LA++S D
Sbjct: 115 WSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYD 174
Query: 206 KTIKVW-----DLSIKPSLEYSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVW---- 256
T+++W D L T+ S K + F L CS DS+V VW
Sbjct: 175 DTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDK--TEGVFRL--CSGSDDSTVRVWKYMG 230
Query: 257 ---DIRRPYIPLASFTE-HKDVVSGLAW 280
D ++ ++ A + HK V +AW
Sbjct: 231 DDEDDQQEWVCEAILPDVHKRQVYNVAW 258
>pdb|4I79|A Chain A, Crystal Structure Of Human Nup43
pdb|4I79|B Chain B, Crystal Structure Of Human Nup43
Length = 399
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 49/102 (48%), Gaps = 9/102 (8%)
Query: 120 GTMRLFDIRCQ--ESTKIFHSNTESV--RDVEFNPHSPYAFASVSENGTIQQWDVRRPEK 175
G ++++D R Q E ++I + V V+ +P+ + A+ ++G + WDVR+
Sbjct: 212 GQLKIWDFRQQGNEPSQILSLTGDRVPLHCVDRHPNQQHVVATGGQDGMLSIWDVRQGTM 271
Query: 176 CFYQFTAHSGPIFACDWH---PEHAWLATASRDKTIKVWDLS 214
AH ++ +H PEH L T S D ++ WD S
Sbjct: 272 PVSLLKAHEAEMWEVHFHPSNPEH--LFTCSEDGSLWHWDAS 311
Score = 32.0 bits (71), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 32/140 (22%), Positives = 63/140 (45%), Gaps = 13/140 (9%)
Query: 50 LNFSCNDVAWSCI-----EENHIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVS 104
L+ + + V C+ +++ +ATG +G + +W++ Q + + H+ + +V
Sbjct: 230 LSLTGDRVPLHCVDRHPNQQHVVATGGQDGMLSIWDVRQ--GTMPVSLLKAHEAEMWEVH 287
Query: 105 FHYVESNWLISGSQDGTMRLFDIRCQ--ESTKIFHSNTESVRDVEFNPHSPYAFASVSEN 162
FH L + S+DG++ +D E + +FH + R F HS A+V ++
Sbjct: 288 FHPSNPEHLFTCSEDGSLWHWDASTDVPEKSSLFH---QGGRSSTFLSHSISNQANVHQS 344
Query: 163 GTIQQWDVRRPEKCFYQFTA 182
I W P K + T+
Sbjct: 345 -VISSWLSTDPAKDRIEITS 363
>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed
Length = 361
Score = 35.8 bits (81), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 23/120 (19%), Positives = 57/120 (47%), Gaps = 10/120 (8%)
Query: 114 ISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRP 173
++GS+ G +R+ + + K + + ++ +++F+P P SVS++ ++ W+++
Sbjct: 85 VAGSR-GIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTD 143
Query: 174 E--KCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDL-------SIKPSLEYSIN 224
F H + + D+ + + D ++K+W + +IK S +Y+ N
Sbjct: 144 TLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPN 203
Score = 31.6 bits (70), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 96 HKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSNTESVRD 145
H +N++ FH + N L+S S+D +RL++I+ IF E RD
Sbjct: 109 HGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIF-GGVEGHRD 157
>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k27 Peptide
Length = 365
Score = 35.8 bits (81), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 23/120 (19%), Positives = 57/120 (47%), Gaps = 10/120 (8%)
Query: 114 ISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRP 173
++GS+ G +R+ + + K + + ++ +++F+P P SVS++ ++ W+++
Sbjct: 89 VAGSR-GIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTD 147
Query: 174 E--KCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDL-------SIKPSLEYSIN 224
F H + + D+ + + D ++K+W + +IK S +Y+ N
Sbjct: 148 TLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPN 207
Score = 31.6 bits (70), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 96 HKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSNTESVRD 145
H +N++ FH + N L+S S+D +RL++I+ IF E RD
Sbjct: 113 HGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIF-GGVEGHRD 161
>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form
pdb|3K26|A Chain A, Complex Structure Of Eed And Trimethylated H3k4
pdb|3K27|A Chain A, Complex Structure Of Eed And Trimethylated H3k9
Length = 366
Score = 35.8 bits (81), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 23/120 (19%), Positives = 57/120 (47%), Gaps = 10/120 (8%)
Query: 114 ISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRP 173
++GS+ G +R+ + + K + + ++ +++F+P P SVS++ ++ W+++
Sbjct: 90 VAGSR-GIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTD 148
Query: 174 E--KCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDL-------SIKPSLEYSIN 224
F H + + D+ + + D ++K+W + +IK S +Y+ N
Sbjct: 149 TLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPN 208
Score = 31.6 bits (70), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 96 HKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSNTESVRD 145
H +N++ FH + N L+S S+D +RL++I+ IF E RD
Sbjct: 114 HGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIF-GGVEGHRD 162
>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H1k26 Peptide
pdb|3IJ0|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k9 Peptide
pdb|3IJ1|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H4k20 Peptide
pdb|3IJC|A Chain A, Crystal Structure Of Eed In Complex With Ndsb-195
Length = 365
Score = 35.8 bits (81), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 23/120 (19%), Positives = 57/120 (47%), Gaps = 10/120 (8%)
Query: 114 ISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRP 173
++GS+ G +R+ + + K + + ++ +++F+P P SVS++ ++ W+++
Sbjct: 89 VAGSR-GIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTD 147
Query: 174 E--KCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDL-------SIKPSLEYSIN 224
F H + + D+ + + D ++K+W + +IK S +Y+ N
Sbjct: 148 TLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPN 207
Score = 31.6 bits (70), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 96 HKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSNTESVRD 145
H +N++ FH + N L+S S+D +RL++I+ IF E RD
Sbjct: 113 HGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIF-GGVEGHRD 161
>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The
Eed-Ezh2 Polycomb Complex
pdb|3JZG|A Chain A, Structure Of Eed In Complex With H3k27me3
pdb|3JZH|A Chain A, Eed-H3k79me3
Length = 402
Score = 35.8 bits (81), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 23/120 (19%), Positives = 57/120 (47%), Gaps = 10/120 (8%)
Query: 114 ISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRP 173
++GS+ G +R+ + + K + + ++ +++F+P P SVS++ ++ W+++
Sbjct: 126 VAGSR-GIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTD 184
Query: 174 E--KCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDL-------SIKPSLEYSIN 224
F H + + D+ + + D ++K+W + +IK S +Y+ N
Sbjct: 185 TLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPN 244
Score = 31.6 bits (70), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 96 HKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSNTESVRD 145
H +N++ FH + N L+S S+D +RL++I+ IF E RD
Sbjct: 150 HGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIF-GGVEGHRD 198
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 35.4 bits (80), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 45/204 (22%), Positives = 84/204 (41%), Gaps = 24/204 (11%)
Query: 146 VEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRD 205
V++N F S S++ + W E+ H+G I++ D + T S D
Sbjct: 38 VKYNKEGDLLF-SCSKDSSASVWYSLNGER-LGTLDGHTGTIWSIDVDCFTKYCVTGSAD 95
Query: 206 KTIKVWDLSIKPSLEYSINTIASVSRIKWRPQRKFHLASCSLVVD--SSVNVWDIRRPYI 263
+IK+WD+S + + + V R+++ P + LA V+ S+N+++I R
Sbjct: 96 YSIKLWDVSNGQCVA-TWKSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSA 154
Query: 264 ----------PLASFTEHK--DVVSGLAWRGDPQLFIAS---SRVSIIPRAKNIK----I 304
P+ H+ D + W + IA ++S + N + I
Sbjct: 155 THELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSI 214
Query: 305 FIASSRVSIIPRAENIKIFITSSR 328
+ +S + + ++ FITSSR
Sbjct: 215 DLHEKSISDMQFSPDLTYFITSSR 238
>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice
Length = 753
Score = 35.0 bits (79), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 43/88 (48%), Gaps = 5/88 (5%)
Query: 156 FASVSENGTIQQWDVR-RPEKCFYQFTAHSGPIFACDW-HPEHAW-LATASRDKTIKVWD 212
A+ S + TI+ ++V K T H GP++ DW HP+ LA+ S D + +W
Sbjct: 24 LATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWK 83
Query: 213 LSIKPSLEYSINTI--ASVSRIKWRPQR 238
+ +++ + ASV+ ++W P
Sbjct: 84 EENGRWSQIAVHAVHSASVNSVQWAPHE 111
Score = 31.6 bits (70), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 54/114 (47%), Gaps = 15/114 (13%)
Query: 199 LATASRDKTIKVWDLSIKPSLEYSINTIAS----VSRIKW-RPQRKFHLASCSLVVDSSV 253
LAT S DKTIK+++ ++ I+T+ V R+ W P+ LASCS D V
Sbjct: 24 LATCSSDKTIKIFE--VEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCS--YDGKV 79
Query: 254 NVWDIRRP-YIPLASFTEHKDVVSGLAW---RGDPQLFIASS--RVSIIPRAKN 301
+W + +A H V+ + W P L +ASS +VS++ +N
Sbjct: 80 LIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKEN 133
>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade
Length = 379
Score = 35.0 bits (79), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 43/88 (48%), Gaps = 5/88 (5%)
Query: 156 FASVSENGTIQQWDVR-RPEKCFYQFTAHSGPIFACDW-HPEHAW-LATASRDKTIKVWD 212
A+ S + TI+ ++V K T H GP++ DW HP+ LA+ S D + +W
Sbjct: 26 LATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWK 85
Query: 213 LSIKPSLEYSINTI--ASVSRIKWRPQR 238
+ +++ + ASV+ ++W P
Sbjct: 86 EENGRWSQIAVHAVHSASVNSVQWAPHE 113
Score = 31.6 bits (70), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 54/114 (47%), Gaps = 15/114 (13%)
Query: 199 LATASRDKTIKVWDLSIKPSLEYSINTIAS----VSRIKW-RPQRKFHLASCSLVVDSSV 253
LAT S DKTIK+++ ++ I+T+ V R+ W P+ LASCS D V
Sbjct: 26 LATCSSDKTIKIFE--VEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSY--DGKV 81
Query: 254 NVWDIRRP-YIPLASFTEHKDVVSGLAW---RGDPQLFIASS--RVSIIPRAKN 301
+W + +A H V+ + W P L +ASS +VS++ +N
Sbjct: 82 LIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKEN 135
>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 297
Score = 34.7 bits (78), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 43/88 (48%), Gaps = 5/88 (5%)
Query: 156 FASVSENGTIQQWDVR-RPEKCFYQFTAHSGPIFACDW-HPEHAW-LATASRDKTIKVWD 212
A+ S + TI+ ++V K T H GP++ DW HP+ LA+ S D + +W
Sbjct: 24 MATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWK 83
Query: 213 LSIKPSLEYSINTI--ASVSRIKWRPQR 238
+ +++ + ASV+ ++W P
Sbjct: 84 EENGRWSQIAVHAVHSASVNSVQWAPHE 111
Score = 32.3 bits (72), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 52/114 (45%), Gaps = 15/114 (13%)
Query: 199 LATASRDKTIKVWDLSIKPSLEYSINTIAS----VSRIKW-RPQRKFHLASCSLVVDSSV 253
+AT S DKTIK+ ++ I+T+ V R+ W P+ LASCS D V
Sbjct: 24 MATCSSDKTIKI--FEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSY--DGKV 79
Query: 254 NVWDIRRP-YIPLASFTEHKDVVSGLAW---RGDPQLFIASS--RVSIIPRAKN 301
+W + +A H V+ + W P L +ASS +VS++ +N
Sbjct: 80 MIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKEN 133
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 34.7 bits (78), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 65/156 (41%), Gaps = 16/156 (10%)
Query: 66 HIATGATNGAVVVWNL---GQISRSKQERVFN--DHKRTVNKVSFHYVESNWLISGSQDG 120
H+ TG G V VW++ G S Q N ++ R+ + + LI G +
Sbjct: 65 HVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLP----DGCTLIVGGEAS 119
Query: 121 TMRLFDIRCQESTKI---FHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCF 177
T+ ++D+ + +I S+ + + +P S F+ S+ G I WD+ +
Sbjct: 120 TLSIWDLA-APTPRIKAELTSSAPACYALAISPDSKVCFSCCSD-GNIAVWDLHN-QTLV 176
Query: 178 YQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDL 213
QF H+ D + L T D T++ WDL
Sbjct: 177 RQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDL 212
Score = 30.8 bits (68), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 27/120 (22%), Positives = 48/120 (40%), Gaps = 10/120 (8%)
Query: 163 GTIQQWDVRRP--EKCFYQFTA--HSGPIFACDWHPEHAWLATASRDKTIKVWDLSI-KP 217
G ++ WD+ P + Q I +C P+ L T+ +WDL+ P
Sbjct: 72 GCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTP 131
Query: 218 SLEYSINTIA-SVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTEHKDVVS 276
++ + + A + + P K + CS D ++ VWD+ + + F H D S
Sbjct: 132 RIKAELTSSAPACYALAISPDSKVCFSCCS---DGNIAVWDLHNQTL-VRQFQGHTDGAS 187
>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|2PM6|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|3IKO|A Chain A, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|D Chain D, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|G Chain G, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3MZK|A Chain A, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZK|D Chain D, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZL|A Chain A, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|C Chain C, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|E Chain E, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|G Chain G, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
Length = 297
Score = 34.3 bits (77), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 43/88 (48%), Gaps = 5/88 (5%)
Query: 156 FASVSENGTIQQWDVR-RPEKCFYQFTAHSGPIFACDW-HPEHAW-LATASRDKTIKVWD 212
A+ S + TI+ ++V K T H GP++ DW HP+ LA+ S D + +W
Sbjct: 24 LATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWK 83
Query: 213 LSIKPSLEYSINTI--ASVSRIKWRPQR 238
+ +++ + ASV+ ++W P
Sbjct: 84 EENGRWSQIAVHAVHSASVNSVQWAPHE 111
Score = 31.6 bits (70), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 52/114 (45%), Gaps = 15/114 (13%)
Query: 199 LATASRDKTIKVWDLSIKPSLEYSINTIAS----VSRIKW-RPQRKFHLASCSLVVDSSV 253
LAT S DKTIK+ ++ I+T+ V R+ W P+ LASCS D V
Sbjct: 24 LATCSSDKTIKI--FEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSY--DGKV 79
Query: 254 NVWDIRRP-YIPLASFTEHKDVVSGLAW---RGDPQLFIASS--RVSIIPRAKN 301
+W + +A H V+ + W P L +ASS +VS++ +N
Sbjct: 80 LIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKEN 133
>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
pdb|2PM7|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
Length = 297
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 43/87 (49%), Gaps = 5/87 (5%)
Query: 157 ASVSENGTIQQWDVR-RPEKCFYQFTAHSGPIFACDW-HPEHAW-LATASRDKTIKVWDL 213
A+ S + TI+ ++V K T H GP++ DW HP+ LA+ S D + +W
Sbjct: 25 ATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVXIWKE 84
Query: 214 SIKPSLEYSINTI--ASVSRIKWRPQR 238
+ +++ + ASV+ ++W P
Sbjct: 85 ENGRWSQIAVHAVHSASVNSVQWAPHE 111
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 27/119 (22%), Positives = 54/119 (45%), Gaps = 5/119 (4%)
Query: 112 WLISGSQDGTMRLFDIRCQESTKIFHSN-TESVRDVEFNPHSPYAFASVSENGTIQQWDV 170
++I+G G + + ++ +E T S T S + + ++ + ENG + QWD+
Sbjct: 261 YVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDL 320
Query: 171 RRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSI----KPSLEYSINT 225
R PE +F + G + A ++ D +IK+ +S +P++E+ T
Sbjct: 321 RSPECPVGEFLINEGTPINNVYFAAGALFVSSGFDTSIKLDIISDPESERPAIEFETPT 379
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 27/119 (22%), Positives = 54/119 (45%), Gaps = 5/119 (4%)
Query: 112 WLISGSQDGTMRLFDIRCQESTKIFHSN-TESVRDVEFNPHSPYAFASVSENGTIQQWDV 170
++I+G G + + ++ +E T S T S + + ++ + ENG + QWD+
Sbjct: 258 YVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDL 317
Query: 171 RRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSI----KPSLEYSINT 225
R PE +F + G + A ++ D +IK+ +S +P++E+ T
Sbjct: 318 RSPECPVGEFLINEGTPINNVYFAAGALFVSSGFDTSIKLDIISDPESERPAIEFETPT 376
>pdb|1K8K|C Chain C, Crystal Structure Of Arp23 COMPLEX
pdb|1TYQ|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ATP AND
Calcium
pdb|1U2V|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ADP AND
Calcium
pdb|2P9I|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp And Crosslinked With Gluteraldehyde
pdb|2P9K|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Atp And Crosslinked With Glutaraldehyde
pdb|2P9L|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX
pdb|2P9N|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9P|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9S|C Chain C, Structure Of Bovine Arp23 COMPLEX CO-Crystallized With
AtpMG2+
pdb|2P9U|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Amp-Pnp And Calcium
Length = 372
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 7/77 (9%)
Query: 178 YQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDL---SIKPSLE-YSINTIASVSRIK 233
++ H+G + DW P+ + T D+ VW L + KP+L IN A ++
Sbjct: 46 HELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARC--VR 103
Query: 234 WRP-QRKFHLASCSLVV 249
W P ++KF + S S V+
Sbjct: 104 WAPNEKKFAVGSGSRVI 120
>pdb|3DXK|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0944636
pdb|3DXM|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0993548
pdb|3RSE|C Chain C, Structural And Biochemical Characterization Of Two Binding
Sites For Nucleation Promoting Factor Wasp-Vca On Arp23
COMPLEX
pdb|3UKR|C Chain C, Crystal Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-666
pdb|3UKU|C Chain C, Structure Of Arp2/3 Complex With Bound Inhibitor Ck-869
pdb|3ULE|C Chain C, Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-869 And Atp
Length = 372
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 7/77 (9%)
Query: 178 YQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDL---SIKPSLE-YSINTIASVSRIK 233
++ H+G + DW P+ + T D+ VW L + KP+L IN A ++
Sbjct: 46 HELKEHNGQVTGIDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARC--VR 103
Query: 234 WRP-QRKFHLASCSLVV 249
W P ++KF + S S V+
Sbjct: 104 WAPNEKKFAVGSGSRVI 120
>pdb|1U4C|A Chain A, Structure Of Spindle Checkpoint Protein Bub3
pdb|1U4C|B Chain B, Structure Of Spindle Checkpoint Protein Bub3
Length = 349
Score = 32.0 bits (71), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 31/144 (21%), Positives = 57/144 (39%), Gaps = 19/144 (13%)
Query: 95 DHKRTVNKVSFHYVESNWLISGSQDGTMRLFDI-RCQESTKIFHSN--TESVRDVEFNPH 151
++ + NK+ S+ LI G + ++ F + C++ + +RDV P
Sbjct: 145 NNTKVKNKIFTXDTNSSRLIVGXNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPK 204
Query: 152 SPYAFASVSENGTI------QQWDVRRPEKCFYQFTAH---------SGPIFACDWHPEH 196
+A S +G + Q D K F F H + P+ + ++ P H
Sbjct: 205 EQEGYACSSIDGRVAVEFFDDQGDDYNSSKRF-AFRCHRLNLKDTNLAYPVNSIEFSPRH 263
Query: 197 AWLATASRDKTIKVWDLSIKPSLE 220
+L TA D I W+L + ++
Sbjct: 264 KFLYTAGSDGIISCWNLQTRKKIK 287
>pdb|2I3S|A Chain A, Bub3 Complex With Bub1 Glebs Motif
pdb|2I3S|C Chain C, Bub3 Complex With Bub1 Glebs Motif
pdb|2I3S|E Chain E, Bub3 Complex With Bub1 Glebs Motif
Length = 349
Score = 31.6 bits (70), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 31/144 (21%), Positives = 57/144 (39%), Gaps = 19/144 (13%)
Query: 95 DHKRTVNKVSFHYVESNWLISGSQDGTMRLFDI-RCQESTKIFHSN--TESVRDVEFNPH 151
++ + NK+ S+ LI G + ++ F + C++ + +RDV P
Sbjct: 145 NNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPK 204
Query: 152 SPYAFASVSENGTI------QQWDVRRPEKCFYQFTAH---------SGPIFACDWHPEH 196
+A S +G + Q D K F F H + P+ + ++ P H
Sbjct: 205 EQEGYACSSIDGRVAVEFFDDQGDDYNSSKRF-AFRCHRLNLKDTNLAYPVNSIEFSPRH 263
Query: 197 AWLATASRDKTIKVWDLSIKPSLE 220
+L TA D I W+L + ++
Sbjct: 264 KFLYTAGSDGIISCWNLQTRKKIK 287
>pdb|1YFQ|A Chain A, High Resolution S. Cerevisiae Bub3 Mitotic Checkpoint
Protein
Length = 342
Score = 31.6 bits (70), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 31/144 (21%), Positives = 57/144 (39%), Gaps = 19/144 (13%)
Query: 95 DHKRTVNKVSFHYVESNWLISGSQDGTMRLFDI-RCQESTKIFHSN--TESVRDVEFNPH 151
++ + NK+ S+ LI G + ++ F + C++ + +RDV P
Sbjct: 145 NNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPK 204
Query: 152 SPYAFASVSENGTI------QQWDVRRPEKCFYQFTAH---------SGPIFACDWHPEH 196
+A S +G + Q D K F F H + P+ + ++ P H
Sbjct: 205 EQEGYACSSIDGRVAVEFFDDQGDDYNSSKRF-AFRCHRLNLKDTNLAYPVNSIEFSPRH 263
Query: 197 AWLATASRDKTIKVWDLSIKPSLE 220
+L TA D I W+L + ++
Sbjct: 264 KFLYTAGSDGIISCWNLQTRKKIK 287
>pdb|2I3T|A Chain A, Bub3 Complex With Mad3 (Bubr1) Glebs Motif
pdb|2I3T|C Chain C, Bub3 Complex With Mad3 (Bubr1) Glebs Motif
pdb|2I3T|E Chain E, Bub3 Complex With Mad3 (Bubr1) Glebs Motif
pdb|2I3T|G Chain G, Bub3 Complex With Mad3 (Bubr1) Glebs Motif
Length = 341
Score = 31.6 bits (70), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 31/144 (21%), Positives = 57/144 (39%), Gaps = 19/144 (13%)
Query: 95 DHKRTVNKVSFHYVESNWLISGSQDGTMRLFDI-RCQESTKIFHSN--TESVRDVEFNPH 151
++ + NK+ S+ LI G + ++ F + C++ + +RDV P
Sbjct: 145 NNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPK 204
Query: 152 SPYAFASVSENGTI------QQWDVRRPEKCFYQFTAH---------SGPIFACDWHPEH 196
+A S +G + Q D K F F H + P+ + ++ P H
Sbjct: 205 EQEGYACSSIDGRVAVEFFDDQGDDYNSSKRF-AFRCHRLNLKDTNLAYPVNSIEFSPRH 263
Query: 197 AWLATASRDKTIKVWDLSIKPSLE 220
+L TA D I W+L + ++
Sbjct: 264 KFLYTAGSDGIISCWNLQTRKKIK 287
>pdb|3EI1|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 14 Bp 6-4
Photoproduct Containing Dna-Duplex
pdb|3EI2|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Abasic Site
Containing Dna-Duplex
pdb|3EI3|B Chain B, Structure Of The Hsddb1-Drddb2 Complex
Length = 383
Score = 31.2 bits (69), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
Query: 143 VRDVEFNPHSPYAFASVSENGTIQQWDVR--RPEKCFYQFTAHSGPIFACDWHP-EHAWL 199
V EFNP + A+ S + T++ WD+R + + + H P+ A ++P + L
Sbjct: 207 VTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKL 266
Query: 200 ATASRDKTIKVW 211
T + I+V+
Sbjct: 267 LTTDQRNEIRVY 278
Score = 28.5 bits (62), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 183 HSGPIFACDWHPEHAWL-ATASRDKTIKVWDL 213
H + +++P WL AT+S D T+K+WDL
Sbjct: 203 HKAKVTHAEFNPRCDWLMATSSVDATVKLWDL 234
>pdb|4A08|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 13 Bp Cpd-Duplex (
Purine At D-1 Position) At 3.0 A Resolution (Cpd 1)
pdb|4A09|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 15 Bp Cpd-Duplex
(Purine At D-1 Position) At 3.1 A Resolution (Cpd 2)
pdb|4A0A|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.6 A Resolution (Cpd 3)
pdb|4A0B|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0B|D Chain D, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0K|D Chain D, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|B Chain B, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|D Chain D, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 382
Score = 31.2 bits (69), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
Query: 143 VRDVEFNPHSPYAFASVSENGTIQQWDVR--RPEKCFYQFTAHSGPIFACDWHP-EHAWL 199
V EFNP + A+ S + T++ WD+R + + + H P+ A ++P + L
Sbjct: 206 VTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKL 265
Query: 200 ATASRDKTIKVW 211
T + I+V+
Sbjct: 266 LTTDQRNEIRVY 277
Score = 28.1 bits (61), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 183 HSGPIFACDWHPEHAWL-ATASRDKTIKVWDL 213
H + +++P WL AT+S D T+K+WDL
Sbjct: 202 HKAKVTHAEFNPRCDWLMATSSVDATVKLWDL 233
>pdb|3I2N|A Chain A, Crystal Structure Of Wd40 Repeats Protein Wdr92
Length = 357
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/82 (23%), Positives = 41/82 (50%), Gaps = 11/82 (13%)
Query: 54 CNDVAWSCIEENHIATGATNGAVVVWNLGQISRSKQERVFN--DHKRTVNKVSFHYVESN 111
C + +++ ++ATG G + +WNL + + V++ HK +N +
Sbjct: 70 CGTFGATSLQQRYLATGDFGGNLHIWNL----EAPEMPVYSVKGHKEIINAIDGIGGLGI 125
Query: 112 W-----LISGSQDGTMRLFDIR 128
+++GS+DGT++++D R
Sbjct: 126 GEGAPEIVTGSRDGTVKVWDPR 147
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 45/113 (39%), Gaps = 31/113 (27%)
Query: 120 GTMRLFDIRCQESTKIFHSNTESVRDVE-FNPHSPYAFASVSE----------NGTIQQW 168
G ++L++I+ H + + +R++E P F + S G + W
Sbjct: 44 GVIQLYEIQ--------HGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIW 95
Query: 169 DVRRPEKCFYQFTAHSGPIFACDWH---------PEHAWLATASRDKTIKVWD 212
++ PE Y H I A D PE + T SRD T+KVWD
Sbjct: 96 NLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPE---IVTGSRDGTVKVWD 145
>pdb|3DW8|B Chain B, Structure Of A Protein Phosphatase 2a Holoenzyme With B55
Subunit
pdb|3DW8|E Chain E, Structure Of A Protein Phosphatase 2a Holoenzyme With B55
Subunit
Length = 447
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 33/141 (23%), Positives = 57/141 (40%), Gaps = 33/141 (23%)
Query: 140 TESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWL 199
TE + EF+P+S F S GTI+ D+R
Sbjct: 226 TEVITAAEFHPNSCNTFVYSSSKGTIRLCDMR---------------------------- 257
Query: 200 ATASRDKTIKVWDLSIKPS-LEYSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDI 258
A+A D+ K+++ PS + I+S+S +K+ ++ + L SV VWD+
Sbjct: 258 ASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDYL----SVKVWDL 313
Query: 259 RRPYIPLASFTEHKDVVSGLA 279
P+ ++ H+ + S L
Sbjct: 314 NMENRPVETYQVHEYLRSKLC 334
>pdb|3EWE|A Chain A, Crystal Structure Of The Nup85SEH1 COMPLEX
pdb|3EWE|C Chain C, Crystal Structure Of The Nup85SEH1 COMPLEX
Length = 349
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 22/33 (66%), Gaps = 2/33 (6%)
Query: 182 AHSGPIFACDW-HPEHA-WLATASRDKTIKVWD 212
AH I A DW PE+ +A+AS DKT+K+W+
Sbjct: 53 AHDSSIVAIDWASPEYGRIIASASYDKTVKLWE 85
>pdb|3F3F|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3G|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
Length = 351
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 22/33 (66%), Gaps = 2/33 (6%)
Query: 182 AHSGPIFACDW-HPEHA-WLATASRDKTIKVWD 212
AH I A DW PE+ +A+AS DKT+K+W+
Sbjct: 55 AHDSSIVAIDWASPEYGRIIASASYDKTVKLWE 87
>pdb|3F3P|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|I Chain I, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|J Chain J, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
Length = 351
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 22/33 (66%), Gaps = 2/33 (6%)
Query: 182 AHSGPIFACDW-HPEHA-WLATASRDKTIKVWD 212
AH I A DW PE+ +A+AS DKT+K+W+
Sbjct: 55 AHDSSIVAIDWASPEYGRIIASASYDKTVKLWE 87
>pdb|1QVI|A Chain A, Crystal Structure Of Scallop Myosin S1 In The Pre-Power
Stroke State To 2.6 Angstrom Resolution: Flexibility And
Function In The Head
pdb|1S5G|A Chain A, Structure Of Scallop Myosin S1 Reveals A Novel Nucleotide
Conformation
pdb|1SR6|A Chain A, Structure Of Nucleotide-free Scallop Myosin S1
Length = 840
Score = 27.7 bits (60), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 33/74 (44%)
Query: 66 HIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLF 125
+ T N VV ++G +++S +R+FN R VNK + N+ I +F
Sbjct: 408 EMVTKGQNMNQVVNSVGALAKSLYDRMFNWLVRRVNKTLDTKAKRNYYIGVLDIAGFEIF 467
Query: 126 DIRCQESTKIFHSN 139
D E I ++N
Sbjct: 468 DFNSFEQLCINYTN 481
>pdb|1KK7|A Chain A, Scallop Myosin In The Near Rigor Conformation
pdb|1KK8|A Chain A, Scallop Myosin (S1-Adp-Befx) In The Actin-Detached
Conformation
Length = 837
Score = 27.7 bits (60), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 33/74 (44%)
Query: 66 HIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLF 125
+ T N VV ++G +++S +R+FN R VNK + N+ I +F
Sbjct: 408 EMVTKGQNMNQVVNSVGALAKSLYDRMFNWLVRRVNKTLDTKAKRNYYIGVLDIAGFEIF 467
Query: 126 DIRCQESTKIFHSN 139
D E I ++N
Sbjct: 468 DFNSFEQLCINYTN 481
>pdb|1B7T|A Chain A, Myosin Digested By Papain
pdb|1L2O|A Chain A, Scallop Myosin S1-Adp-P-Pdm In The Actin-Detached
Conformation
pdb|1KQM|A Chain A, Scallop Myosin S1-Amppnp In The Actin-Detached
Conformation
pdb|1KWO|A Chain A, Scallop Myosin S1-Atpgammas-P-Pdm In The Actin-Detached
Conformation
Length = 835
Score = 27.7 bits (60), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 33/74 (44%)
Query: 66 HIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLF 125
+ T N VV ++G +++S +R+FN R VNK + N+ I +F
Sbjct: 408 EMVTKGQNMNQVVNSVGALAKSLYDRMFNWLVRRVNKTLDTKAKRNYYIGVLDIAGFEIF 467
Query: 126 DIRCQESTKIFHSN 139
D E I ++N
Sbjct: 468 DFNSFEQLCINYTN 481
>pdb|1DFL|A Chain A, Scallop Myosin S1 Complexed With Mgadp:vanadate-Transition
State
pdb|1DFL|B Chain B, Scallop Myosin S1 Complexed With Mgadp:vanadate-Transition
State
pdb|2W4T|C Chain C, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W4V|C Chain C, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Quick Release Step
pdb|2W4W|C Chain C, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Quick Stretch Step
Length = 831
Score = 27.7 bits (60), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 33/74 (44%)
Query: 66 HIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLF 125
+ T N VV ++G +++S +R+FN R VNK + N+ I +F
Sbjct: 404 EMVTKGQNMNQVVNSVGALAKSLYDRMFNWLVRRVNKTLDTKAKRNYYIGVLDIAGFEIF 463
Query: 126 DIRCQESTKIFHSN 139
D E I ++N
Sbjct: 464 DFNSFEQLCINYTN 477
>pdb|1DFK|A Chain A, Nucleotide-Free Scallop Myosin S1-Near Rigor State
Length = 830
Score = 27.7 bits (60), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 33/74 (44%)
Query: 66 HIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLF 125
+ T N VV ++G +++S +R+FN R VNK + N+ I +F
Sbjct: 403 EMVTKGQNMNQVVNSVGALAKSLYDRMFNWLVRRVNKTLDTKAKRNYYIGVLDIAGFEIF 462
Query: 126 DIRCQESTKIFHSN 139
D E I ++N
Sbjct: 463 DFNSFEQLCINYTN 476
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.133 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,645,065
Number of Sequences: 62578
Number of extensions: 371150
Number of successful extensions: 1357
Number of sequences better than 100.0: 112
Number of HSP's better than 100.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 745
Number of HSP's gapped (non-prelim): 340
length of query: 330
length of database: 14,973,337
effective HSP length: 99
effective length of query: 231
effective length of database: 8,778,115
effective search space: 2027744565
effective search space used: 2027744565
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)