RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy6213
(330 letters)
>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic
proteins that cover a wide variety of functions
including adaptor/regulatory modules in signal
transduction, pre-mRNA processing and cytoskeleton
assembly; typically contains a GH dipeptide 11-24
residues from its N-terminus and the WD dipeptide at its
C-terminus and is 40 residues long, hence the name WD40;
between GH and WD lies a conserved core; serves as a
stable propeller-like platform to which proteins can
bind either stably or reversibly; forms a propeller-like
structure with several blades where each blade is
composed of a four-stranded anti-parallel b-sheet;
instances with few detectable copies are hypothesized to
form larger structures by dimerization; each WD40
sequence repeat forms the first three strands of one
blade and the last strand in the next blade; the last
C-terminal WD40 repeat completes the blade structure of
the first WD40 repeat to create the closed ring
propeller-structure; residues on the top and bottom
surface of the propeller are proposed to coordinate
interactions with other proteins and/or small ligands; 7
copies of the repeat are present in this alignment.
Length = 289
Score = 129 bits (327), Expect = 2e-35
Identities = 70/240 (29%), Positives = 119/240 (49%), Gaps = 17/240 (7%)
Query: 55 NDVAWSCIEENHIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLI 114
DVA S +A+G+++ + +W+L + R H V+ V+F + L
Sbjct: 55 RDVAASADGTY-LASGSSDKTIRLWDLET---GECVRTLTGHTSYVSSVAFS-PDGRILS 109
Query: 115 SGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPE 174
S S+D T++++D+ + +T+ V V F+P + AS S++GTI+ WD+R
Sbjct: 110 SSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFV-ASSSQDGTIKLWDLR-TG 167
Query: 175 KCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKP---SLEYSINTIASVSR 231
KC T H+G + + + P+ L ++S D TIK+WDLS +L N + SV+
Sbjct: 168 KCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVA- 226
Query: 232 IKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTEHKDVVSGLAWRGDPQLFIASS 291
+ P LAS S D ++ VWD+R + + + H + V+ LAW D + + S
Sbjct: 227 --FSPDGYL-LASGS--EDGTIRVWDLRTGE-CVQTLSGHTNSVTSLAWSPDGKRLASGS 280
Score = 128 bits (323), Expect = 8e-35
Identities = 63/229 (27%), Positives = 111/229 (48%), Gaps = 12/229 (5%)
Query: 65 NHIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRL 124
+ATG+ +G + VW+L + R H V V+ + +L SGS D T+RL
Sbjct: 22 KLLATGSGDGTIKVWDL---ETGELLRTLKGHTGPVRDVAA-SADGTYLASGSSDKTIRL 77
Query: 125 FDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFTAHS 184
+D+ E + +T V V F+P +S S + TI+ WDV KC H+
Sbjct: 78 WDLETGECVRTLTGHTSYVSSVAFSPDGRILSSS-SRDKTIKVWDV-ETGKCLTTLRGHT 135
Query: 185 GPIFACDWHPEHAWLATASRDKTIKVWDL-SIKPSLEYSINTIASVSRIKWRPQRKFHLA 243
+ + + P+ ++A++S+D TIK+WDL + K + +T V+ + + P + L+
Sbjct: 136 DWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHT-GEVNSVAFSPDGEKLLS 194
Query: 244 SCSLVVDSSVNVWDIRRPYIPLASFTEHKDVVSGLAWRGDPQLFIASSR 292
S S D ++ +WD+ L + H++ V+ +A+ D L + S
Sbjct: 195 SSS---DGTIKLWDLSTG-KCLGTLRGHENGVNSVAFSPDGYLLASGSE 239
Score = 123 bits (312), Expect = 3e-33
Identities = 61/207 (29%), Positives = 101/207 (48%), Gaps = 9/207 (4%)
Query: 91 RVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNP 150
R H V V+F L +GS DGT++++D+ E + +T VRDV +
Sbjct: 3 RTLKGHTGGVTCVAFSPD-GKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASA 61
Query: 151 HSPYAFASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKV 210
Y AS S + TI+ WD+ E C T H+ + + + P+ L+++SRDKTIKV
Sbjct: 62 DGTY-LASGSSDKTIRLWDLETGE-CVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKV 119
Query: 211 WDLSIKPSLEYSINTI-ASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFT 269
WD+ ++ V+ + + P F +AS S D ++ +WD+R +A+ T
Sbjct: 120 WDV-ETGKCLTTLRGHTDWVNSVAFSPDGTF-VASSSQ--DGTIKLWDLRTGK-CVATLT 174
Query: 270 EHKDVVSGLAWRGDPQLFIASSRVSII 296
H V+ +A+ D + ++SS I
Sbjct: 175 GHTGEVNSVAFSPDGEKLLSSSSDGTI 201
Score = 108 bits (271), Expect = 2e-27
Identities = 48/160 (30%), Positives = 79/160 (49%), Gaps = 7/160 (4%)
Query: 53 SCNDVAWSCIEENHIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNW 112
N VA+S + +A+ + +G + +W+L H VN V+F +
Sbjct: 137 WVNSVAFSP-DGTFVASSSQDGTIKLWDLRTGKC---VATLTGHTGEVNSVAFSP-DGEK 191
Query: 113 LISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRR 172
L+S S DGT++L+D+ + + V V F+P Y AS SE+GTI+ WD+R
Sbjct: 192 LLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDG-YLLASGSEDGTIRVWDLR- 249
Query: 173 PEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWD 212
+C + H+ + + W P+ LA+ S D TI++WD
Sbjct: 250 TGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289
>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction
only].
Length = 466
Score = 101 bits (251), Expect = 6e-24
Identities = 70/283 (24%), Positives = 129/283 (45%), Gaps = 16/283 (5%)
Query: 55 NDVAWSCIEENHIATGAT--NGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNW 112
+ +A S + N I ++ +G V +W+L + K R H +V ++F
Sbjct: 113 SKLALSSPDGNSILLASSSLDGTVKLWDLS--TPGKLIRTLEGHSESVTSLAFSPDGKLL 170
Query: 113 LISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRR 172
S DGT++L+D+R + +T+ V + F+P AS S +GTI+ WD+
Sbjct: 171 ASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLST 230
Query: 173 PEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSLEYSINT-IASVSR 231
+ + HS + + + P+ + LA+ S D TI++WDL SL +++ +SV
Sbjct: 231 GKLLRSTLSGHSDSVVSS-FSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLS 289
Query: 232 IKWRPQRKFHLASCSLVVDSSVNVWDIRRPY-IPLASFTEHKDVVSGLAWRGDPQLFIAS 290
+ + P K LAS S D +V +WD+ + + H+ VS L++ D L ++
Sbjct: 290 VAFSPDGKL-LASGS--SDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSG 346
Query: 291 S------RVSIIPRAKNIKIFIASSRVSIIPRAENIKIFITSS 327
R+ + K +K S V + + + ++ + S
Sbjct: 347 GSDDGTIRLWDLRTGKPLKTLEGHSNVLSVSFSPDGRVVSSGS 389
Score = 92.1 bits (227), Expect = 9e-21
Identities = 55/253 (21%), Positives = 102/253 (40%), Gaps = 10/253 (3%)
Query: 37 VETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVVWNLGQISRSKQERVFNDH 96
+ T + + S +A+S + + + +G + +W+L K H
Sbjct: 141 LSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRT---GKPLSTLAGH 197
Query: 97 KRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAF 156
V+ ++F + SGS DGT+RL+D+ + + S F+P
Sbjct: 198 TDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSL-L 256
Query: 157 ASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLS-- 214
AS S +GTI+ WD+R + HS + + + P+ LA+ S D T+++WDL
Sbjct: 257 ASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETG 316
Query: 215 IKPSLEYSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTEHKDV 274
S VS + + P ++ S D ++ +WD+R E
Sbjct: 317 KLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSD--DGTIRLWDLRTGKPLK--TLEGHSN 372
Query: 275 VSGLAWRGDPQLF 287
V +++ D ++
Sbjct: 373 VLSVSFSPDGRVV 385
Score = 85.1 bits (209), Expect = 2e-18
Identities = 64/263 (24%), Positives = 121/263 (46%), Gaps = 14/263 (5%)
Query: 53 SCNDVAWSCIEENHIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNW 112
+ +A+S IA+G+++G + +W+L + + + V+ S + +
Sbjct: 200 PVSSLAFSPDGGLLIASGSSDGTIRLWDL-STGKLLRSTLSGHSDSVVSSFSP---DGSL 255
Query: 113 LISGSQDGTMRLFDIR-CQESTKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVR 171
L SGS DGT+RL+D+R + ++ SV V F+P AS S +GT++ WD+
Sbjct: 256 LASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKL-LASGSSDGTVRLWDLE 314
Query: 172 RPEK-CFYQFTAHSGPIFACDWHPEHAWLATA-SRDKTIKVWDLSIKPSLEYSINTIASV 229
+ H GP+ + + P+ + L + S D TI++WDL ++ ++V
Sbjct: 315 TGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLR-TGKPLKTLEGHSNV 373
Query: 230 SRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTEHKDVVSGLAWRGDPQLFIA 289
+ + P ++S S D +V +WD+ + L + H V+ L + D + +
Sbjct: 374 LSVSFSPD-GRVVSSGS--TDGTVRLWDLSTGSL-LRNLDGHTSRVTSLDFSPDGKSLAS 429
Query: 290 SSRVSIIPRAKNIKIFIASSRVS 312
S + I R ++K + S S
Sbjct: 430 GSSDNTI-RLWDLKTSLKSVSFS 451
Score = 77.1 bits (188), Expect = 1e-15
Identities = 53/216 (24%), Positives = 93/216 (43%), Gaps = 9/216 (4%)
Query: 86 RSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQEST--KIFHSNTESV 143
+ H+ ++ ++F + L+SGS DGT++L+D+ E + + SV
Sbjct: 54 PDLSSLLLRGHEDSITSIAFSP-DGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSV 112
Query: 144 RDVEFNPHS--PYAFASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLAT 201
+ + AS S +GT++ WD+ P K HS + + + P+ LA+
Sbjct: 113 SKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLAS 172
Query: 202 ASR-DKTIKVWDLSIKPSLEYSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRR 260
S D TIK+WDL L VS + + P +AS S D ++ +WD+
Sbjct: 173 GSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSS--DGTIRLWDLST 230
Query: 261 PYIPLASFTEHKDVVSGLAWRGDPQLFIASSRVSII 296
+ ++ + H D V ++ D L + S I
Sbjct: 231 GKLLRSTLSGHSDSVVS-SFSPDGSLLASGSSDGTI 265
Score = 70.1 bits (170), Expect = 2e-13
Identities = 61/246 (24%), Positives = 117/246 (47%), Gaps = 13/246 (5%)
Query: 37 VETHNLRVGKNINLNFSCNDVAWSCI---EENHIATGATNGAVVVWNLGQISRSKQERVF 93
+ +L GK + S + + + + +A+G+++G + +W+L S S R
Sbjct: 223 IRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDL--RSSSSLLRTL 280
Query: 94 NDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQE--STKIFHSNTESVRDVEFNPH 151
+ H +V V+F + L SGS DGT+RL+D+ + S+ + V + F+P
Sbjct: 281 SGHSSSVLSVAFSP-DGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPD 339
Query: 152 SPYAFASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVW 211
+ S++GTI+ WD+R K HS + + + P+ +++ S D T+++W
Sbjct: 340 GSLLVSGGSDDGTIRLWDLRT-GKPLKTLEGHS-NVLSVSFSPDGRVVSSGSTDGTVRLW 397
Query: 212 DLSIKPSLEYSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTEH 271
DLS L + V+ + + P K LAS S D+++ +WD++ ++ +
Sbjct: 398 DLSTGSLLRNLDGHTSRVTSLDFSPDGK-SLASGSS--DNTIRLWDLKTSLKSVSFSPDG 454
Query: 272 KDVVSG 277
K + S
Sbjct: 455 KVLASK 460
Score = 56.6 bits (135), Expect = 6e-09
Identities = 34/165 (20%), Positives = 64/165 (38%), Gaps = 9/165 (5%)
Query: 131 ESTKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFAC 190
+ +++ S + S ++ + + D+ H I +
Sbjct: 17 KKSELGPSLNSLSLLSLGSSESGILLLALLSDSLVSLPDLSSLL-----LRGHEDSITSI 71
Query: 191 DWHPEHAWLATASRDKTIKVWDLSIKPSL--EYSINTIASVSRIKWR-PQRKFHLASCSL 247
+ P+ L + S D TIK+WDL L +SVS++ P L + S
Sbjct: 72 AFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSS 131
Query: 248 VVDSSVNVWDIRRPYIPLASFTEHKDVVSGLAWRGDPQLFIASSR 292
+D +V +WD+ P + + H + V+ LA+ D +L + S
Sbjct: 132 -LDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSS 175
>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat.
Length = 39
Score = 51.6 bits (124), Expect = 3e-09
Identities = 13/39 (33%), Positives = 21/39 (53%)
Query: 174 EKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWD 212
K H+GP+ + + P+ LA+ S D T++VWD
Sbjct: 1 GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39
Score = 36.2 bits (84), Expect = 0.001
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 88 KQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFD 126
K R H V V+F + N L SGS DGT+R++D
Sbjct: 2 KLLRTLKGHTGPVTSVAFSP-DGNLLASGSDDGTVRVWD 39
Score = 33.9 bits (78), Expect = 0.006
Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 131 ESTKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWD 169
+ + +T V V F+P AS S++GT++ WD
Sbjct: 2 KLLRTLKGHTGPVTSVAFSPDGNL-LASGSDDGTVRVWD 39
Score = 25.4 bits (56), Expect = 6.8
Identities = 10/28 (35%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Query: 53 SCNDVAWSCIEENHIATGATNGAVVVWN 80
VA+S + N +A+G+ +G V VW+
Sbjct: 13 PVTSVAFSP-DGNLLASGSDDGTVRVWD 39
Score = 25.4 bits (56), Expect = 7.0
Identities = 7/29 (24%), Positives = 12/29 (41%)
Query: 264 PLASFTEHKDVVSGLAWRGDPQLFIASSR 292
L + H V+ +A+ D L + S
Sbjct: 3 LLRTLKGHTGPVTSVAFSPDGNLLASGSD 31
>gnl|CDD|197651 smart00320, WD40, WD40 repeats. Note that these repeats are
permuted with respect to the structural repeats (blades)
of the beta propeller domain.
Length = 40
Score = 50.4 bits (121), Expect = 9e-09
Identities = 13/40 (32%), Positives = 22/40 (55%)
Query: 173 PEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWD 212
+ H+GP+ + + P+ +LA+ S D TIK+WD
Sbjct: 1 SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
Score = 35.4 bits (82), Expect = 0.001
Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 88 KQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFD 126
+ + H V V+F + +L SGS DGT++L+D
Sbjct: 3 ELLKTLKGHTGPVTSVAFSP-DGKYLASGSDDGTIKLWD 40
Score = 33.1 bits (76), Expect = 0.012
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 131 ESTKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWD 169
E K +T V V F+P Y AS S++GTI+ WD
Sbjct: 3 ELLKTLKGHTGPVTSVAFSPDGKY-LASGSDDGTIKLWD 40
Score = 25.4 bits (56), Expect = 5.7
Identities = 6/29 (20%), Positives = 12/29 (41%)
Query: 264 PLASFTEHKDVVSGLAWRGDPQLFIASSR 292
L + H V+ +A+ D + + S
Sbjct: 4 LLKTLKGHTGPVTSVAFSPDGKYLASGSD 32
>gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional.
Length = 793
Score = 52.8 bits (126), Expect = 1e-07
Identities = 39/162 (24%), Positives = 78/162 (48%), Gaps = 5/162 (3%)
Query: 57 VAWSCIEENHIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISG 116
+ W+ ++ +A+ G V VW+ ++RS+ +H++ V + + + L SG
Sbjct: 538 ICWNSYIKSQVASSNFEGVVQVWD---VARSQLVTEMKEHEKRVWSIDYSSADPTLLASG 594
Query: 117 SQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKC 176
S DG+++L+ I S + ++ V+F S + A S + + +D+R P+
Sbjct: 595 SDDGSVKLWSINQGVSIGTIKTKA-NICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLP 653
Query: 177 FYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPS 218
HS + + + + L ++S D T+K+WDLS+ S
Sbjct: 654 LCTMIGHSKTVSYVRF-VDSSTLVSSSTDNTLKLWDLSMSIS 694
Score = 42.8 bits (100), Expect = 2e-04
Identities = 34/130 (26%), Positives = 63/130 (48%), Gaps = 5/130 (3%)
Query: 148 FNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHP-EHAWLATASRDK 206
+N + AS + G +Q WDV R + + H +++ D+ + LA+ S D
Sbjct: 540 WNSYIKSQVASSNFEGVVQVWDVAR-SQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDG 598
Query: 207 TIKVWDLSIKPSLEYSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLA 266
++K+W ++ S+ +I T A++ +++ + LA S D V +D+R P +PL
Sbjct: 599 SVKLWSINQGVSIG-TIKTKANICCVQFPSESGRSLAFGS--ADHKVYYYDLRNPKLPLC 655
Query: 267 SFTEHKDVVS 276
+ H VS
Sbjct: 656 TMIGHSKTVS 665
>gnl|CDD|173611 PTZ00421, PTZ00421, coronin; Provisional.
Length = 493
Score = 47.6 bits (113), Expect = 5e-06
Identities = 47/162 (29%), Positives = 63/162 (38%), Gaps = 43/162 (26%)
Query: 145 DVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASR 204
DV FNP P + SE+GTI W + PE+ Q S PI H
Sbjct: 80 DVAFNPFDPQKLFTASEDGTIMGWGI--PEEGLTQNI--SDPIVHLQGH----------- 124
Query: 205 DKTIKVWDLSIKPSLEYSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIP 264
T KV +S PS ++N +AS D VNVWD+ R
Sbjct: 125 --TKKVGIVSFHPS---AMNVLASAG------------------ADMVVNVWDVERG-KA 160
Query: 265 LASFTEHKDVVSGLAWRGDPQLFIASSR---VSII-PRAKNI 302
+ H D ++ L W D L +S+ ++II PR I
Sbjct: 161 VEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTI 202
Score = 28.3 bits (63), Expect = 6.6
Identities = 34/166 (20%), Positives = 66/166 (39%), Gaps = 11/166 (6%)
Query: 56 DVAWSCIEENHIATGATNGAVVVWNL---GQISRSKQERV-FNDHKRTVNKVSFHYVESN 111
DVA++ + + T + +G ++ W + G V H + V VSFH N
Sbjct: 80 DVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMN 139
Query: 112 WLISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVR 171
L S D + ++D+ ++ ++ +++ + +E+N + S++ + D R
Sbjct: 140 VLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSL-LCTTSKDKKLNIIDPR 198
Query: 172 RPEKCFYQFTAH-SGPIFACDWHPEHAWLAT----ASRDKTIKVWD 212
AH S C W + T S+ + I +WD
Sbjct: 199 D-GTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWD 243
>gnl|CDD|240412 PTZ00420, PTZ00420, coronin; Provisional.
Length = 568
Score = 42.6 bits (100), Expect = 2e-04
Identities = 29/101 (28%), Positives = 46/101 (45%), Gaps = 19/101 (18%)
Query: 170 VRRPEKCFYQFTAHSGPIFACDWHPEHA-WLATASRDKTIKVWDLSIKPSLEYSINTIA- 227
+R+P + H+ I ++P + LA+ S D TI+VW++ P + S+ I
Sbjct: 62 MRKPP--VIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEI---PHNDESVKEIKD 116
Query: 228 ----------SVSRIKWRPQRKFHLASCSLVVDSSVNVWDI 258
+S I W P + + CS DS VN+WDI
Sbjct: 117 PQCILKGHKKKISIIDWNPMNYYIM--CSSGFDSFVNIWDI 155
Score = 42.2 bits (99), Expect = 3e-04
Identities = 26/105 (24%), Positives = 49/105 (46%), Gaps = 9/105 (8%)
Query: 138 SNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQ-------FTAHSGPIFAC 190
+T S+ D++FNP AS SE+ TI+ W++ ++ + H I
Sbjct: 72 GHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISII 131
Query: 191 DWHPEHAW-LATASRDKTIKVWDLSIKPSLEYSINTIASVSRIKW 234
DW+P + + + ++ D + +WD+ + IN +S +KW
Sbjct: 132 DWNPMNYYIMCSSGFDSFVNIWDIE-NEKRAFQINMPKKLSSLKW 175
Score = 35.3 bits (81), Expect = 0.037
Identities = 22/90 (24%), Positives = 43/90 (47%), Gaps = 8/90 (8%)
Query: 96 HKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQ-ESTK-------IFHSNTESVRDVE 147
H ++ + F+ S L SGS+D T+R+++I ES K I + + + ++
Sbjct: 73 HTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIID 132
Query: 148 FNPHSPYAFASVSENGTIQQWDVRRPEKCF 177
+NP + Y S + + WD+ ++ F
Sbjct: 133 WNPMNYYIMCSSGFDSFVNIWDIENEKRAF 162
>gnl|CDD|227498 COG5170, CDC55, Serine/threonine protein phosphatase 2A, regulatory
subunit [Signal transduction mechanisms].
Length = 460
Score = 35.4 bits (81), Expect = 0.042
Identities = 22/100 (22%), Positives = 35/100 (35%), Gaps = 18/100 (18%)
Query: 100 VNKVSFHYVESNWLISGSQDGTMRLFDIR----CQESTKIFHSN------------TESV 143
+ FH N + S G ++L D+R C S K+F S+
Sbjct: 224 ITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSI 283
Query: 144 RDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFTAH 183
D +F+ + Y S T++ WDV + H
Sbjct: 284 SDFKFSDNGRY-ILSRDYL-TVKIWDVNMAKNPIKTIPMH 321
>gnl|CDD|188426 TIGR03911, pyrrolys_PylD, pyrrolysine biosynthesis protein PylD.
This protein is PylD, part of a three-gene cassette that
is sufficient to direct the biosynthesis of pyrrolysine,
the twenty-second amino acid, incorporated in some
species at a UAG canonical stop codon [Amino acid
biosynthesis, Other].
Length = 266
Score = 28.2 bits (63), Expect = 6.4
Identities = 14/54 (25%), Positives = 19/54 (35%), Gaps = 15/54 (27%)
Query: 17 GLAQPSRNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATG 70
G A+ +I + D HNL+ GK I +N ATG
Sbjct: 91 GYAEAVERGAEIIFMADDNRFIAHNLKTGK---------------IADNSEATG 129
>gnl|CDD|213326 cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synthetases similar
to LC-FACS from Thermus thermophiles and Arabidopsis.
This family includes fatty acyl-CoA synthetases that can
activate medium to long-chain fatty acids. These enzymes
catalyze the ATP-dependent acylation of fatty acids in a
two-step reaction. The carboxylate substrate first
reacts with ATP to form an acyl-adenylate intermediate,
which then reacts with CoA to produce an acyl-CoA ester.
Fatty acyl-CoA synthetases are responsible for fatty
acid degradation as well as physiological regulation of
cellular functions via the production of fatty acyl-CoA
esters. The fatty acyl-CoA synthetase from Thermus
thermophiles in this family has been shown to catalyze
the long-chain fatty acid, myristoyl acid. Also included
in this family are acyl activating enzymes from
Arabidopsis, which contains a large number of proteins
from this family with up to 63 different genes, many of
which are uncharacterized.
Length = 520
Score = 28.0 bits (63), Expect = 8.8
Identities = 11/27 (40%), Positives = 12/27 (44%)
Query: 178 YQFTAHSGPIFACDWHPEHAWLATASR 204
Y T GPI C+W PE L R
Sbjct: 312 YGLTETYGPITVCEWKPEWDALPAEER 338
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.133 0.414
Gapped
Lambda K H
0.267 0.0728 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 16,266,911
Number of extensions: 1474494
Number of successful extensions: 1053
Number of sequences better than 10.0: 1
Number of HSP's gapped: 989
Number of HSP's successfully gapped: 40
Length of query: 330
Length of database: 10,937,602
Length adjustment: 97
Effective length of query: 233
Effective length of database: 6,635,264
Effective search space: 1546016512
Effective search space used: 1546016512
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (26.5 bits)